HEADER BLOOD CLOTTING 18-APR-08 3CVM TITLE HIGH RESOLUTION STRUCTURE OF A STABLE PLASMINOGEN ACTIVATOR INHIBITOR TITLE 2 TYPE-1 IN ITS PROTEASE CLEAVED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN ACTIVATOR INHIBITOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PAI-1, ENDOTHELIAL PLASMINOGEN ACTIVATOR INHIBITOR, PAI; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: SERPINE1, PAI1, PLANH1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: SG130009; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE-30 KEYWDS PLASMINOGEN ACTIVATOR INHIBITOR TYPE-1, CLEAVED SERPIN, GLYCOPROTEIN, KEYWDS 2 PLASMINOGEN ACTIVATION, POLYMORPHISM, PROTEASE INHIBITOR, SECRETED, KEYWDS 3 SERINE PROTEASE INHIBITOR, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR J.K.JENSEN,P.G.W.GETTINS REVDAT 6 30-AUG-23 3CVM 1 REMARK REVDAT 5 20-OCT-21 3CVM 1 SEQADV REVDAT 4 24-FEB-09 3CVM 1 VERSN REVDAT 3 07-OCT-08 3CVM 1 JRNL REVDAT 2 09-SEP-08 3CVM 1 JRNL REVDAT 1 19-AUG-08 3CVM 0 JRNL AUTH J.K.JENSEN,P.G.GETTINS JRNL TITL HIGH-RESOLUTION STRUCTURE OF THE STABLE PLASMINOGEN JRNL TITL 2 ACTIVATOR INHIBITOR TYPE-1 VARIANT 14-1B IN ITS JRNL TITL 3 PROTEINASE-CLEAVED FORM: A NEW TOOL FOR DETAILED INTERACTION JRNL TITL 4 STUDIES AND MODELING. JRNL REF PROTEIN SCI. V. 17 1844 2008 JRNL REFN ISSN 0961-8368 JRNL PMID 18725454 JRNL DOI 10.1110/PS.036707.108 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 75139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6360 - 5.0630 0.95 4517 140 0.2170 0.2550 REMARK 3 2 5.0630 - 4.0300 0.96 4458 138 0.1820 0.2100 REMARK 3 3 4.0300 - 3.5240 0.97 4557 141 0.1850 0.2370 REMARK 3 4 3.5240 - 3.2030 0.97 4492 139 0.2110 0.2720 REMARK 3 5 3.2030 - 2.9740 0.98 4559 141 0.2300 0.3110 REMARK 3 6 2.9740 - 2.7990 0.97 4527 140 0.2360 0.3100 REMARK 3 7 2.7990 - 2.6600 0.98 4592 142 0.2320 0.3220 REMARK 3 8 2.6600 - 2.5440 0.99 4543 140 0.2350 0.3030 REMARK 3 9 2.5440 - 2.4460 0.99 4614 143 0.2490 0.3110 REMARK 3 10 2.4460 - 2.3620 0.99 4594 142 0.2470 0.3490 REMARK 3 11 2.3620 - 2.2880 0.99 4598 142 0.2610 0.2740 REMARK 3 12 2.2880 - 2.2230 0.99 4573 142 0.2650 0.3720 REMARK 3 13 2.2230 - 2.1650 0.99 4578 141 0.2690 0.3380 REMARK 3 14 2.1650 - 2.1120 0.99 4575 142 0.2720 0.3260 REMARK 3 15 2.1120 - 2.0640 0.99 4543 141 0.2830 0.3280 REMARK 3 16 2.0640 - 2.0200 0.99 4564 141 0.2940 0.3380 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.44700 REMARK 3 B22 (A**2) : -2.90000 REMARK 3 B33 (A**2) : 5.34800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 14.18400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 12048 REMARK 3 ANGLE : 0.813 21760 REMARK 3 CHIRALITY : 0.063 942 REMARK 3 PLANARITY : 0.004 1825 REMARK 3 DIHEDRAL : 13.402 3001 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CVM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 40 REMARK 40 PROGRAMS : MOLPROBITY (KING, REDUCE, AND PROBE) REMARK 40 AUTHORS : I.W.DAVIS,V.B.CHEN, REMARK 40 : R.M.IMMORMINO,J.J.HEADD,W.B.ARENDALL,J.M.WORD REMARK 40 URL : HTTP://KINEMAGE.BIOCHEM.DUKE.EDU/MOLPROBITY/ REMARK 40 AUTHORS : I.W.DAVIS,A.LEAVER-FAY,V.B.CHEN,J.N.BLOCK, REMARK 40 : G.J.KAPRAL,X.WANG,L.W.MURRAY,W.B.ARENDALL, REMARK 40 : J.SNOEYINK,J.S.RICHARDSON,D.C.RICHARDSON REMARK 40 REFERENCE : MOLPROBITY: ALL-ATOM CONTACTS AND STRUCTURE REMARK 40 : VALIDATION FOR PROTEINS AND NUCLEIC ACIDS REMARK 40 : NUCLEIC ACIDS RESEARCH. 2007;35:W375-83. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75140 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 9PAI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 4.5M AMMONIUM ACETATE, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.00700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 ARG A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 347 REMARK 465 ALA A 348 REMARK 465 PRO A 349 REMARK 465 MET B -12 REMARK 465 ARG B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 MET B 347 REMARK 465 ALA B 348 REMARK 465 PRO B 349 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 1 CG1 CG2 REMARK 480 LYS A 28 CE REMARK 480 ASP A 29 CG REMARK 480 ARG A 30 NE NH1 NH2 REMARK 480 GLU A 53 CD REMARK 480 LYS A 80 CE NZ REMARK 480 GLU A 90 CD REMARK 480 ASP A 95 CG REMARK 480 ASP A 102 CG REMARK 480 LEU A 105 CD2 REMARK 480 VAL A 106 C REMARK 480 ARG A 118 CZ REMARK 480 ASP A 125 CG REMARK 480 SER A 127 C CB REMARK 480 GLU A 128 CD REMARK 480 PHE A 134 CE1 REMARK 480 SER A 149 CA REMARK 480 HIS A 150 ND1 CD2 REMARK 480 GLN A 159 CB CG CD OE1 REMARK 480 GLN A 174 OE1 REMARK 480 PRO A 180 CG REMARK 480 ASP A 181 CG OD2 REMARK 480 LEU A 188 CD1 CD2 REMARK 480 GLY A 194 C REMARK 480 SER A 195 C REMARK 480 THR A 205 CB REMARK 480 ASP A 217 CG REMARK 480 HIS A 219 NE2 REMARK 480 TYR A 220 OH REMARK 480 ASP A 231 CG REMARK 480 GLU A 244 CB OE1 REMARK 480 ARG A 268 CD CZ REMARK 480 LEU A 272 CD2 REMARK 480 LEU A 280 CD1 REMARK 480 GLU A 281 CD OE2 REMARK 480 GLU A 283 CD REMARK 480 ARG A 287 NE REMARK 480 GLU A 291 CD REMARK 480 ASP A 297 CG REMARK 480 ARG A 300 NE NH1 REMARK 480 GLN A 303 CD REMARK 480 ASP A 305 CG REMARK 480 LEU A 319 CD1 REMARK 480 LYS A 325 CG CD REMARK 480 ALA A 335 O REMARK 480 ARG A 346 CA C CG CD CZ NH2 REMARK 480 GLU A 350 C CD REMARK 480 ILE A 353 CD1 REMARK 480 ALA B 0 CA REMARK 480 ASP B 14 CG REMARK 480 ASP B 29 CG REMARK 480 ARG B 30 NE CZ NH1 NH2 REMARK 480 ALA B 40 CB REMARK 480 GLU B 53 CD REMARK 480 GLN B 56 OE1 NE2 REMARK 480 MET B 62 CE REMARK 480 LYS B 65 CE REMARK 480 ASP B 67 CB OD2 REMARK 480 LYS B 80 CE NZ REMARK 480 LYS B 88 CE REMARK 480 ASP B 102 C CG REMARK 480 GLN B 107 CG NE2 REMARK 480 ARG B 115 CZ REMARK 480 ARG B 118 CZ REMARK 480 LYS B 122 CE REMARK 480 ASP B 125 CB REMARK 480 SER B 127 CB REMARK 480 GLU B 128 CA C CD REMARK 480 PHE B 134 CG CE1 REMARK 480 ILE B 148 CD1 REMARK 480 SER B 149 CB REMARK 480 HIS B 150 CD2 REMARK 480 GLY B 153 CA REMARK 480 PRO B 180 CG REMARK 480 ARG B 186 NE NH2 REMARK 480 HIS B 190 CE1 REMARK 480 LYS B 191 CA REMARK 480 GLY B 194 C REMARK 480 SER B 195 C REMARK 480 SER B 198 C REMARK 480 LYS B 207 CE REMARK 480 PRO B 216 CB REMARK 480 ASP B 217 CG REMARK 480 HIS B 219 CG NE2 REMARK 480 HIS B 229 CE1 REMARK 480 GLU B 242 CD REMARK 480 SER B 260 CB REMARK 480 ASN B 265 ND2 REMARK 480 ARG B 268 CD REMARK 480 LYS B 277 NZ REMARK 480 THR B 282 CG2 REMARK 480 GLU B 283 CD REMARK 480 ARG B 287 CZ REMARK 480 LYS B 288 CG REMARK 480 GLU B 291 CD REMARK 480 ASP B 297 CG REMARK 480 ARG B 300 NH1 REMARK 480 GLN B 301 CD REMARK 480 PHE B 306 CD2 REMARK 480 ASP B 311 OD1 REMARK 480 GLN B 312 CG REMARK 480 LEU B 319 N CD1 REMARK 480 VAL B 324 CG1 REMARK 480 LYS B 325 CD REMARK 480 GLU B 327 CD REMARK 480 GLU B 330 CD REMARK 480 ALA B 345 C REMARK 480 GLU B 350 CA CG CD OE1 REMARK 480 GLU B 378 CB OE2 REMARK 480 PRO B 379 C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD3 ARG A 10 HG2 GLN B 257 1.19 REMARK 500 HE3 LYS A 243 HH22 ARG A 356 1.25 REMARK 500 HD21 LEU A 224 HD13 ILE A 352 1.31 REMARK 500 HG1 THR A 184 O HOH A 409 1.35 REMARK 500 OD1 ASP A 305 HG1 THR A 307 1.53 REMARK 500 HH TYR A 210 OD2 ASP A 222 1.56 REMARK 500 HH TYR B 210 OD2 ASP B 222 1.58 REMARK 500 O HOH A 404 O HOH A 664 1.59 REMARK 500 O HOH B 849 O HOH B 854 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 233 O - C - N ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 88 -58.15 69.19 REMARK 500 ASP A 102 31.79 -99.49 REMARK 500 PHE A 109 -74.76 -68.84 REMARK 500 HIS A 150 72.08 -111.97 REMARK 500 ASP A 193 24.66 -76.85 REMARK 500 GLU A 378 107.38 -160.10 REMARK 500 LYS B 88 -62.87 72.30 REMARK 500 ASP B 102 58.94 -108.48 REMARK 500 MET B 110 -40.59 -135.36 REMARK 500 ASN B 329 -156.98 -148.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 109 MET B 110 -132.46 REMARK 500 MET B 110 PRO B 111 137.93 REMARK 500 ALA B 345 ARG B 346 -134.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN B 204 -11.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9PAI RELATED DB: PDB REMARK 900 CLEAVED SUBSTRATE FORM OF PLASMINOGEN ACTIVATOR INHIBITOR TYPE-1 DBREF 3CVM A -2 379 UNP P05121 PAI1_HUMAN 21 402 DBREF 3CVM B -2 379 UNP P05121 PAI1_HUMAN 21 402 SEQADV 3CVM MET A -12 UNP P05121 EXPRESSION TAG SEQADV 3CVM ARG A -11 UNP P05121 EXPRESSION TAG SEQADV 3CVM GLY A -10 UNP P05121 EXPRESSION TAG SEQADV 3CVM SER A -9 UNP P05121 EXPRESSION TAG SEQADV 3CVM HIS A -8 UNP P05121 EXPRESSION TAG SEQADV 3CVM HIS A -7 UNP P05121 EXPRESSION TAG SEQADV 3CVM HIS A -6 UNP P05121 EXPRESSION TAG SEQADV 3CVM HIS A -5 UNP P05121 EXPRESSION TAG SEQADV 3CVM HIS A -4 UNP P05121 EXPRESSION TAG SEQADV 3CVM HIS A -3 UNP P05121 EXPRESSION TAG SEQADV 3CVM ARG A 10 UNP P05121 HIS 33 VARIANT SEQADV 3CVM HIS A 150 UNP P05121 ASN 173 ENGINEERED MUTATION SEQADV 3CVM THR A 154 UNP P05121 LYS 177 ENGINEERED MUTATION SEQADV 3CVM LEU A 319 UNP P05121 GLN 342 ENGINEERED MUTATION SEQADV 3CVM ILE A 354 UNP P05121 MET 377 ENGINEERED MUTATION SEQADV 3CVM MET B -12 UNP P05121 EXPRESSION TAG SEQADV 3CVM ARG B -11 UNP P05121 EXPRESSION TAG SEQADV 3CVM GLY B -10 UNP P05121 EXPRESSION TAG SEQADV 3CVM SER B -9 UNP P05121 EXPRESSION TAG SEQADV 3CVM HIS B -8 UNP P05121 EXPRESSION TAG SEQADV 3CVM HIS B -7 UNP P05121 EXPRESSION TAG SEQADV 3CVM HIS B -6 UNP P05121 EXPRESSION TAG SEQADV 3CVM HIS B -5 UNP P05121 EXPRESSION TAG SEQADV 3CVM HIS B -4 UNP P05121 EXPRESSION TAG SEQADV 3CVM HIS B -3 UNP P05121 EXPRESSION TAG SEQADV 3CVM ARG B 10 UNP P05121 HIS 33 VARIANT SEQADV 3CVM HIS B 150 UNP P05121 ASN 173 ENGINEERED MUTATION SEQADV 3CVM THR B 154 UNP P05121 LYS 177 ENGINEERED MUTATION SEQADV 3CVM LEU B 319 UNP P05121 GLN 342 ENGINEERED MUTATION SEQADV 3CVM ILE B 354 UNP P05121 MET 377 ENGINEERED MUTATION SEQRES 1 A 392 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 A 392 VAL HIS HIS PRO PRO SER TYR VAL ALA ARG LEU ALA SER SEQRES 3 A 392 ASP PHE GLY VAL ARG VAL PHE GLN GLN VAL ALA GLN ALA SEQRES 4 A 392 SER LYS ASP ARG ASN VAL VAL PHE SER PRO TYR GLY VAL SEQRES 5 A 392 ALA SER VAL LEU ALA MET LEU GLN LEU THR THR GLY GLY SEQRES 6 A 392 GLU THR GLN GLN GLN ILE GLN ALA ALA MET GLY PHE LYS SEQRES 7 A 392 ILE ASP ASP LYS GLY MET ALA PRO ALA LEU ARG HIS LEU SEQRES 8 A 392 TYR LYS GLU LEU MET GLY PRO TRP ASN LYS ASP GLU ILE SEQRES 9 A 392 SER THR THR ASP ALA ILE PHE VAL GLN ARG ASP LEU LYS SEQRES 10 A 392 LEU VAL GLN GLY PHE MET PRO HIS PHE PHE ARG LEU PHE SEQRES 11 A 392 ARG SER THR VAL LYS GLN VAL ASP PHE SER GLU VAL GLU SEQRES 12 A 392 ARG ALA ARG PHE ILE ILE ASN ASP TRP VAL LYS THR HIS SEQRES 13 A 392 THR LYS GLY MET ILE SER HIS LEU LEU GLY THR GLY ALA SEQRES 14 A 392 VAL ASP GLN LEU THR ARG LEU VAL LEU VAL ASN ALA LEU SEQRES 15 A 392 TYR PHE ASN GLY GLN TRP LYS THR PRO PHE PRO ASP SER SEQRES 16 A 392 SER THR HIS ARG ARG LEU PHE HIS LYS SER ASP GLY SER SEQRES 17 A 392 THR VAL SER VAL PRO MET MET ALA GLN THR ASN LYS PHE SEQRES 18 A 392 ASN TYR THR GLU PHE THR THR PRO ASP GLY HIS TYR TYR SEQRES 19 A 392 ASP ILE LEU GLU LEU PRO TYR HIS GLY ASP THR LEU SER SEQRES 20 A 392 MET PHE ILE ALA ALA PRO TYR GLU LYS GLU VAL PRO LEU SEQRES 21 A 392 SER ALA LEU THR ASN ILE LEU SER ALA GLN LEU ILE SER SEQRES 22 A 392 HIS TRP LYS GLY ASN MET THR ARG LEU PRO ARG LEU LEU SEQRES 23 A 392 VAL LEU PRO LYS PHE SER LEU GLU THR GLU VAL ASP LEU SEQRES 24 A 392 ARG LYS PRO LEU GLU ASN LEU GLY MET THR ASP MET PHE SEQRES 25 A 392 ARG GLN PHE GLN ALA ASP PHE THR SER LEU SER ASP GLN SEQRES 26 A 392 GLU PRO LEU HIS VAL ALA LEU ALA LEU GLN LYS VAL LYS SEQRES 27 A 392 ILE GLU VAL ASN GLU SER GLY THR VAL ALA SER SER SER SEQRES 28 A 392 THR ALA VAL ILE VAL SER ALA ARG MET ALA PRO GLU GLU SEQRES 29 A 392 ILE ILE ILE ASP ARG PRO PHE LEU PHE VAL VAL ARG HIS SEQRES 30 A 392 ASN PRO THR GLY THR VAL LEU PHE MET GLY GLN VAL MET SEQRES 31 A 392 GLU PRO SEQRES 1 B 392 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 B 392 VAL HIS HIS PRO PRO SER TYR VAL ALA ARG LEU ALA SER SEQRES 3 B 392 ASP PHE GLY VAL ARG VAL PHE GLN GLN VAL ALA GLN ALA SEQRES 4 B 392 SER LYS ASP ARG ASN VAL VAL PHE SER PRO TYR GLY VAL SEQRES 5 B 392 ALA SER VAL LEU ALA MET LEU GLN LEU THR THR GLY GLY SEQRES 6 B 392 GLU THR GLN GLN GLN ILE GLN ALA ALA MET GLY PHE LYS SEQRES 7 B 392 ILE ASP ASP LYS GLY MET ALA PRO ALA LEU ARG HIS LEU SEQRES 8 B 392 TYR LYS GLU LEU MET GLY PRO TRP ASN LYS ASP GLU ILE SEQRES 9 B 392 SER THR THR ASP ALA ILE PHE VAL GLN ARG ASP LEU LYS SEQRES 10 B 392 LEU VAL GLN GLY PHE MET PRO HIS PHE PHE ARG LEU PHE SEQRES 11 B 392 ARG SER THR VAL LYS GLN VAL ASP PHE SER GLU VAL GLU SEQRES 12 B 392 ARG ALA ARG PHE ILE ILE ASN ASP TRP VAL LYS THR HIS SEQRES 13 B 392 THR LYS GLY MET ILE SER HIS LEU LEU GLY THR GLY ALA SEQRES 14 B 392 VAL ASP GLN LEU THR ARG LEU VAL LEU VAL ASN ALA LEU SEQRES 15 B 392 TYR PHE ASN GLY GLN TRP LYS THR PRO PHE PRO ASP SER SEQRES 16 B 392 SER THR HIS ARG ARG LEU PHE HIS LYS SER ASP GLY SER SEQRES 17 B 392 THR VAL SER VAL PRO MET MET ALA GLN THR ASN LYS PHE SEQRES 18 B 392 ASN TYR THR GLU PHE THR THR PRO ASP GLY HIS TYR TYR SEQRES 19 B 392 ASP ILE LEU GLU LEU PRO TYR HIS GLY ASP THR LEU SER SEQRES 20 B 392 MET PHE ILE ALA ALA PRO TYR GLU LYS GLU VAL PRO LEU SEQRES 21 B 392 SER ALA LEU THR ASN ILE LEU SER ALA GLN LEU ILE SER SEQRES 22 B 392 HIS TRP LYS GLY ASN MET THR ARG LEU PRO ARG LEU LEU SEQRES 23 B 392 VAL LEU PRO LYS PHE SER LEU GLU THR GLU VAL ASP LEU SEQRES 24 B 392 ARG LYS PRO LEU GLU ASN LEU GLY MET THR ASP MET PHE SEQRES 25 B 392 ARG GLN PHE GLN ALA ASP PHE THR SER LEU SER ASP GLN SEQRES 26 B 392 GLU PRO LEU HIS VAL ALA LEU ALA LEU GLN LYS VAL LYS SEQRES 27 B 392 ILE GLU VAL ASN GLU SER GLY THR VAL ALA SER SER SER SEQRES 28 B 392 THR ALA VAL ILE VAL SER ALA ARG MET ALA PRO GLU GLU SEQRES 29 B 392 ILE ILE ILE ASP ARG PRO PHE LEU PHE VAL VAL ARG HIS SEQRES 30 B 392 ASN PRO THR GLY THR VAL LEU PHE MET GLY GLN VAL MET SEQRES 31 B 392 GLU PRO FORMUL 3 HOH *810(H2 O) HELIX 1 1 HIS A 3 ALA A 26 1 24 HELIX 2 2 SER A 35 THR A 50 1 16 HELIX 3 3 GLY A 51 GLY A 63 1 13 HELIX 4 4 GLY A 70 GLY A 84 1 15 HELIX 5 5 PRO A 85 LYS A 88 5 4 HELIX 6 6 GLY A 108 ARG A 118 1 11 HELIX 7 7 GLU A 128 THR A 144 1 17 HELIX 8 8 PRO A 180 THR A 184 5 5 HELIX 9 9 LEU A 247 ASN A 252 1 6 HELIX 10 10 SER A 255 ASN A 265 1 11 HELIX 11 11 LEU A 286 LEU A 293 1 8 HELIX 12 12 THR A 296 ARG A 300 5 5 HELIX 13 13 HIS B 3 ALA B 26 1 24 HELIX 14 14 SER B 35 THR B 50 1 16 HELIX 15 15 GLY B 51 GLY B 63 1 13 HELIX 16 16 GLY B 70 GLY B 84 1 15 HELIX 17 17 PRO B 85 LYS B 88 5 4 HELIX 18 18 GLY B 108 ARG B 118 1 11 HELIX 19 19 GLU B 128 THR B 144 1 17 HELIX 20 20 PRO B 180 THR B 184 5 5 HELIX 21 21 LEU B 247 ASN B 252 1 6 HELIX 22 22 SER B 255 MET B 266 1 12 HELIX 23 23 LEU B 286 LEU B 293 1 8 HELIX 24 24 THR B 296 ARG B 300 5 5 SHEET 1 A 3 VAL A 1 HIS A 2 0 SHEET 2 A 3 THR B 196 THR B 214 1 O THR B 214 N VAL A 1 SHEET 3 A 3 HIS B 185 HIS B 190 -1 N HIS B 185 O MET B 201 SHEET 1 B 8 VAL B 32 PHE B 34 0 SHEET 2 B 8 THR B 369 VAL B 376 -1 O MET B 373 N PHE B 34 SHEET 3 B 8 PHE B 358 HIS B 364 -1 N VAL B 362 O PHE B 372 SHEET 4 B 8 LEU B 233 PRO B 240 -1 N ALA B 238 O LEU B 359 SHEET 5 B 8 TYR B 220 PRO B 227 -1 N LEU B 226 O MET B 235 SHEET 6 B 8 THR B 196 THR B 214 -1 N PHE B 213 O TYR B 221 SHEET 7 B 8 THR B 267 PRO B 276 -1 O LEU B 275 N MET B 202 SHEET 8 B 8 GLU B 351 ILE B 353 1 O ILE B 352 N LEU B 272 SHEET 1 C 8 VAL A 32 PHE A 34 0 SHEET 2 C 8 THR A 369 VAL A 376 -1 O MET A 373 N PHE A 34 SHEET 3 C 8 PHE A 358 HIS A 364 -1 N PHE A 358 O VAL A 376 SHEET 4 C 8 LEU A 233 PRO A 240 -1 N PHE A 236 O VAL A 361 SHEET 5 C 8 TYR A 220 PRO A 227 -1 N ASP A 222 O ALA A 239 SHEET 6 C 8 THR A 196 THR A 214 -1 N PHE A 213 O TYR A 221 SHEET 7 C 8 THR A 267 PRO A 276 -1 O LEU A 275 N MET A 202 SHEET 8 C 8 GLU A 351 ILE A 353 1 O ILE A 352 N LEU A 272 SHEET 1 D 3 HIS A 185 HIS A 190 0 SHEET 2 D 3 THR A 196 THR A 214 -1 O VAL A 199 N ARG A 187 SHEET 3 D 3 VAL B 1 HIS B 2 1 O VAL B 1 N THR A 214 SHEET 1 E 6 THR A 120 VAL A 124 0 SHEET 2 E 6 GLU A 90 GLN A 100 1 N ILE A 97 O LYS A 122 SHEET 3 E 6 THR A 161 GLN A 174 -1 O VAL A 166 N ALA A 96 SHEET 4 E 6 GLY A 332 ALA A 345 -1 O THR A 333 N GLY A 173 SHEET 5 E 6 LEU A 315 VAL A 328 -1 N LEU A 319 O ILE A 342 SHEET 6 E 6 PHE A 278 ASP A 285 -1 N PHE A 278 O VAL A 328 SHEET 1 F 6 THR B 120 VAL B 124 0 SHEET 2 F 6 GLU B 90 GLN B 100 1 N VAL B 99 O LYS B 122 SHEET 3 F 6 THR B 161 GLN B 174 -1 O VAL B 166 N ALA B 96 SHEET 4 F 6 GLY B 332 SER B 344 -1 O VAL B 343 N LEU B 163 SHEET 5 F 6 HIS B 316 VAL B 328 -1 N LEU B 319 O ILE B 342 SHEET 6 F 6 PHE B 278 ASP B 285 -1 N PHE B 278 O VAL B 328 CRYST1 76.603 104.014 76.426 90.00 101.93 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013054 0.000000 0.002758 0.00000 SCALE2 0.000000 0.009614 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013373 0.00000