HEADER TRANSPORT PROTEIN 18-APR-08 3CVQ TITLE STRUCTURE OF PEROXISOMAL TARGETING SIGNAL 1 (PTS1) BINDING DOMAIN OF TITLE 2 TRYPANOSOMA BRUCEI PEROXIN 5 (TBPEX5)COMPLEXED TO PTS1 PEPTIDE (7- TITLE 3 SKL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME TARGETING SIGNAL 1 RECEPTOR PEX5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BINDING DOMAIN,UNP RESIDUES 332-655; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PTS1 PEPTIDE 7-SKL (AC-SNRWSKL); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 GENE: PEX5; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PSKB3; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS TPR MOTIFS, TPR PROTEIN, PEROXIN 5, PEX5, PTS1 BINDING DOMAIN, KEYWDS 2 PROTEIN-PEPTIDE COMPLEX, RECEPTOR, TPR REPEAT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,C.ROACH,P.A.M.MICHELS,W.G.J.HOL REVDAT 6 30-AUG-23 3CVQ 1 REMARK REVDAT 5 20-OCT-21 3CVQ 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 3CVQ 1 VERSN REVDAT 3 24-FEB-09 3CVQ 1 VERSN REVDAT 2 09-SEP-08 3CVQ 1 JRNL REVDAT 1 24-JUN-08 3CVQ 0 JRNL AUTH P.SAMPATHKUMAR,C.ROACH,P.A.MICHELS,W.G.HOL JRNL TITL STRUCTURAL INSIGHTS INTO THE RECOGNITION OF PEROXISOMAL JRNL TITL 2 TARGETING SIGNAL 1 BY TRYPANOSOMA BRUCEI PEROXIN 5. JRNL REF J.MOL.BIOL. V. 381 867 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18598704 JRNL DOI 10.1016/J.JMB.2008.05.089 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 11705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.321 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 584 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 768 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2266 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 96.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.897 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.446 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.402 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 46.621 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.892 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.868 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2319 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3159 ; 1.487 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 7.460 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;41.329 ;25.128 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 337 ;20.441 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;11.169 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1825 ; 0.001 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 943 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1540 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 52 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.285 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1509 ; 0.356 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2332 ; 0.639 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 924 ; 0.918 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 827 ; 1.488 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 335 A 362 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9765 25.5656 18.7519 REMARK 3 T TENSOR REMARK 3 T11: 0.0206 T22: -0.2357 REMARK 3 T33: -0.1711 T12: 0.1722 REMARK 3 T13: 0.3324 T23: 0.2058 REMARK 3 L TENSOR REMARK 3 L11: 8.4211 L22: 5.2381 REMARK 3 L33: 6.9325 L12: -2.8777 REMARK 3 L13: 5.2634 L23: -0.7879 REMARK 3 S TENSOR REMARK 3 S11: 0.3793 S12: 0.1971 S13: 0.2969 REMARK 3 S21: 0.5692 S22: 0.6672 S23: 0.8674 REMARK 3 S31: -1.2846 S32: -0.6861 S33: -1.0465 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 363 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8603 27.0740 17.2888 REMARK 3 T TENSOR REMARK 3 T11: -0.1828 T22: -0.2235 REMARK 3 T33: -0.3495 T12: 0.0043 REMARK 3 T13: 0.3267 T23: 0.2357 REMARK 3 L TENSOR REMARK 3 L11: 9.4489 L22: 9.7651 REMARK 3 L33: 1.7791 L12: -5.1324 REMARK 3 L13: -4.0287 L23: 2.8429 REMARK 3 S TENSOR REMARK 3 S11: 0.3390 S12: 0.7442 S13: 0.2263 REMARK 3 S21: -0.0724 S22: 1.2493 S23: 0.9425 REMARK 3 S31: -0.8502 S32: -1.5549 S33: -1.5883 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 384 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8976 21.2005 16.1667 REMARK 3 T TENSOR REMARK 3 T11: -0.4500 T22: -0.6359 REMARK 3 T33: -0.5776 T12: 0.2992 REMARK 3 T13: 0.1164 T23: 0.0946 REMARK 3 L TENSOR REMARK 3 L11: 0.7625 L22: 13.0150 REMARK 3 L33: 7.0857 L12: 2.8700 REMARK 3 L13: -0.7059 L23: -6.4292 REMARK 3 S TENSOR REMARK 3 S11: 0.5664 S12: -0.5772 S13: 0.2871 REMARK 3 S21: 1.2227 S22: 0.3078 S23: 1.0854 REMARK 3 S31: -0.7479 S32: -0.1983 S33: -0.8742 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 402 A 445 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7542 22.7732 8.7991 REMARK 3 T TENSOR REMARK 3 T11: -0.5826 T22: -0.6584 REMARK 3 T33: -0.7058 T12: 0.1360 REMARK 3 T13: 0.1288 T23: 0.0550 REMARK 3 L TENSOR REMARK 3 L11: 4.7631 L22: 0.6387 REMARK 3 L33: 4.8539 L12: 1.1226 REMARK 3 L13: 2.9094 L23: -0.3872 REMARK 3 S TENSOR REMARK 3 S11: 0.3203 S12: 0.3729 S13: 0.2644 REMARK 3 S21: -0.1212 S22: -0.0543 S23: 0.2718 REMARK 3 S31: -0.4316 S32: -0.0595 S33: -0.2660 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 446 A 457 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0090 32.4784 8.6260 REMARK 3 T TENSOR REMARK 3 T11: -0.1124 T22: -0.3432 REMARK 3 T33: -0.2593 T12: -0.0515 REMARK 3 T13: 0.1909 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 3.1727 L22: 4.4469 REMARK 3 L33: 26.9704 L12: 0.7446 REMARK 3 L13: 0.8860 L23: 9.5545 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: 0.4714 S13: 2.7270 REMARK 3 S21: 0.2661 S22: 0.6843 S23: -1.6350 REMARK 3 S31: -0.5484 S32: 1.2897 S33: -0.6813 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 472 A 477 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3442 10.0577 2.7743 REMARK 3 T TENSOR REMARK 3 T11: 0.2397 T22: 0.1836 REMARK 3 T33: 0.9243 T12: 0.1696 REMARK 3 T13: 0.2283 T23: 0.1770 REMARK 3 L TENSOR REMARK 3 L11: 49.0865 L22: 10.5188 REMARK 3 L33: 16.9221 L12: -21.9388 REMARK 3 L13: -11.9603 L23: 8.5068 REMARK 3 S TENSOR REMARK 3 S11: 1.3476 S12: -4.3013 S13: 1.4501 REMARK 3 S21: -0.3181 S22: 1.9081 S23: 0.3452 REMARK 3 S31: 2.0618 S32: 2.5964 S33: -3.2557 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 478 A 546 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5733 17.5036 17.7428 REMARK 3 T TENSOR REMARK 3 T11: -0.4839 T22: -0.6122 REMARK 3 T33: -0.6366 T12: 0.0409 REMARK 3 T13: -0.1200 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 3.1090 L22: 4.1785 REMARK 3 L33: 5.2872 L12: 0.7560 REMARK 3 L13: -2.7301 L23: -2.1925 REMARK 3 S TENSOR REMARK 3 S11: 0.5247 S12: 0.0889 S13: 0.0714 REMARK 3 S21: 0.4212 S22: 0.1156 S23: -0.3250 REMARK 3 S31: -0.5336 S32: 0.4230 S33: -0.6402 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 547 A 599 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0118 5.4859 26.8058 REMARK 3 T TENSOR REMARK 3 T11: -0.3549 T22: -0.6582 REMARK 3 T33: -0.7292 T12: 0.1083 REMARK 3 T13: -0.0923 T23: 0.0946 REMARK 3 L TENSOR REMARK 3 L11: 3.0470 L22: 7.0016 REMARK 3 L33: 2.9901 L12: 3.6653 REMARK 3 L13: -0.5093 L23: -3.3570 REMARK 3 S TENSOR REMARK 3 S11: 0.3169 S12: -0.6318 S13: 0.1258 REMARK 3 S21: 0.6829 S22: -0.0251 S23: 0.0671 REMARK 3 S31: -0.0521 S32: -0.0702 S33: -0.2918 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 612 A 628 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5882 -2.5776 19.1195 REMARK 3 T TENSOR REMARK 3 T11: -0.4022 T22: -0.3676 REMARK 3 T33: -0.5063 T12: -0.1190 REMARK 3 T13: -0.1529 T23: 0.1191 REMARK 3 L TENSOR REMARK 3 L11: 19.0639 L22: 45.4591 REMARK 3 L33: 6.1455 L12: -17.1774 REMARK 3 L13: 3.4261 L23: -5.6341 REMARK 3 S TENSOR REMARK 3 S11: 0.7103 S12: 0.3217 S13: 0.0077 REMARK 3 S21: -1.3075 S22: -0.5200 S23: 0.3771 REMARK 3 S31: 0.9049 S32: -0.2772 S33: -0.1903 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 629 A 649 REMARK 3 ORIGIN FOR THE GROUP (A): -5.9096 -2.7937 25.2438 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.0511 REMARK 3 T33: 0.1044 T12: -0.2069 REMARK 3 T13: -0.1464 T23: 0.2756 REMARK 3 L TENSOR REMARK 3 L11: 9.4816 L22: 5.9484 REMARK 3 L33: 21.3745 L12: -0.1506 REMARK 3 L13: -0.5273 L23: 11.2742 REMARK 3 S TENSOR REMARK 3 S11: -0.1654 S12: -0.1893 S13: -0.6936 REMARK 3 S21: 1.0113 S22: 0.1887 S23: 0.7838 REMARK 3 S31: 1.4930 S32: -0.1158 S33: -0.0233 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 7 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9239 2.9335 16.0719 REMARK 3 T TENSOR REMARK 3 T11: -0.0636 T22: -0.8281 REMARK 3 T33: -0.6246 T12: 0.0536 REMARK 3 T13: -0.0084 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 8.5310 L22: 4.7057 REMARK 3 L33: 18.9046 L12: 5.5371 REMARK 3 L13: 7.9429 L23: 6.8760 REMARK 3 S TENSOR REMARK 3 S11: -0.3180 S12: -1.2442 S13: -1.6541 REMARK 3 S21: -3.9025 S22: 1.1478 S23: -1.8460 REMARK 3 S31: 0.8508 S32: 0.2656 S33: -0.8298 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11776 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.07040 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB CODE 1FCH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3M POTASSIUM ACETATE, 0.1M SODIUM REMARK 280 CITRATE MONOHYDRATE, PH 4.8 - 5.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298KK, PH 4.80 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.11600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.39700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.39700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.55800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.39700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.39700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 172.67400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.39700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.39700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.55800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.39700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.39700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 172.67400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 115.11600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT OF PROTEIN PEX5 IS MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 329 REMARK 465 HIS A 330 REMARK 465 MET A 331 REMARK 465 LEU A 332 REMARK 465 GLN A 333 REMARK 465 ASN A 334 REMARK 465 LEU A 458 REMARK 465 GLN A 459 REMARK 465 ALA A 460 REMARK 465 ASP A 461 REMARK 465 VAL A 462 REMARK 465 ASP A 463 REMARK 465 ILE A 464 REMARK 465 ASP A 465 REMARK 465 ASP A 466 REMARK 465 LEU A 467 REMARK 465 ASN A 468 REMARK 465 VAL A 469 REMARK 465 GLN A 470 REMARK 465 SER A 471 REMARK 465 GLY A 600 REMARK 465 GLY A 601 REMARK 465 THR A 602 REMARK 465 THR A 603 REMARK 465 PRO A 604 REMARK 465 THR A 605 REMARK 465 GLY A 606 REMARK 465 GLU A 607 REMARK 465 ALA A 608 REMARK 465 SER A 609 REMARK 465 ARG A 610 REMARK 465 GLU A 611 REMARK 465 LEU A 650 REMARK 465 GLN A 651 REMARK 465 SER A 652 REMARK 465 MET A 653 REMARK 465 LEU A 654 REMARK 465 LEU A 655 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 335 CG OD1 ND2 REMARK 470 TYR A 348 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 GLU A 354 CG CD OE1 OE2 REMARK 470 MET A 359 CG SD CE REMARK 470 LYS A 361 CG CD CE NZ REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 PHE A 475 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 483 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 540 CG CD1 CD2 REMARK 470 LYS A 589 CG CD CE NZ REMARK 470 ARG A 593 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 614 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 621 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 629 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 634 CG CD OE1 OE2 REMARK 470 GLU A 642 CG CD OE1 OE2 REMARK 470 GLU A 647 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SAC B 1 CA - C - N ANGL. DEV. = 23.5 DEGREES REMARK 500 SAC B 1 O - C - N ANGL. DEV. = -20.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 351 93.31 47.83 REMARK 500 GLU A 367 -71.49 -60.31 REMARK 500 ALA A 368 -24.35 -39.12 REMARK 500 GLU A 451 -8.52 -52.52 REMARK 500 ASP A 473 -75.64 -130.53 REMARK 500 PHE A 475 -79.49 -50.44 REMARK 500 ALA A 478 54.20 88.77 REMARK 500 ASN A 514 31.15 72.36 REMARK 500 ASN A 515 66.27 -105.59 REMARK 500 GLU A 528 -69.66 99.81 REMARK 500 ARG A 549 68.00 -114.11 REMARK 500 PRO A 565 -7.28 -59.67 REMARK 500 ARG A 569 153.74 -49.38 REMARK 500 VAL A 570 -58.24 86.69 REMARK 500 GLN A 583 79.80 -114.25 REMARK 500 THR A 613 -79.81 -128.22 REMARK 500 ARG A 614 -163.59 165.15 REMARK 500 SER A 615 -2.27 -58.49 REMARK 500 LEU A 632 -60.12 71.15 REMARK 500 PHE A 644 85.19 -61.09 REMARK 500 LYS A 646 -15.02 -154.38 REMARK 500 ASN B 2 13.45 -142.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 475 PHE A 476 -145.56 REMARK 500 ALA A 477 ALA A 478 -145.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CV0 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEX WITH T. BRUCEI PHOSPHOGLUCOISOMERASE (TBPGI) REMARK 900 PTS1 PEPTIDE REMARK 900 RELATED ID: 3CVL RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEX WITH T. BRUCEI PHOSPHOFRUCTOKINASE (TBPFK) REMARK 900 PTS1 PEPTIDE REMARK 900 RELATED ID: 3CVN RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEX WITH T. BRUCEI GLYCERALDEHYDE-3-PHOSPHATE REMARK 900 DEHYROGENASE (TBGAPDH) PTS1 PEPTIDE REMARK 900 RELATED ID: 3CVP RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEX WITH PTS1 PEPTIDE (10-SKL WITH THE SEQUENCE REMARK 900 ACGTLSNRASKL) DBREF 3CVQ A 332 655 UNP Q9U7C3 Q9U7C3_9TRYP 332 655 DBREF 3CVQ B 1 7 PDB 3CVQ 3CVQ 1 7 SEQADV 3CVQ GLY A 329 UNP Q9U7C3 EXPRESSION TAG SEQADV 3CVQ HIS A 330 UNP Q9U7C3 EXPRESSION TAG SEQADV 3CVQ MET A 331 UNP Q9U7C3 EXPRESSION TAG SEQADV 3CVQ ALA A 411 UNP Q9U7C3 MET 411 ENGINEERED MUTATION SEQADV 3CVQ ALA A 415 UNP Q9U7C3 LYS 415 ENGINEERED MUTATION SEQRES 1 A 327 GLY HIS MET LEU GLN ASN ASN THR ASP TYR PRO PHE GLU SEQRES 2 A 327 ALA ASN ASN PRO TYR MET TYR HIS GLU ASN PRO MET GLU SEQRES 3 A 327 GLU GLY LEU SER MET LEU LYS LEU ALA ASN LEU ALA GLU SEQRES 4 A 327 ALA ALA LEU ALA PHE GLU ALA VAL CYS GLN LYS GLU PRO SEQRES 5 A 327 GLU ARG GLU GLU ALA TRP ARG SER LEU GLY LEU THR GLN SEQRES 6 A 327 ALA GLU ASN GLU LYS ASP GLY LEU ALA ILE ILE ALA LEU SEQRES 7 A 327 ASN HIS ALA ARG ALA LEU ASP PRO ALA ASP ILE ALA VAL SEQRES 8 A 327 HIS ALA ALA LEU ALA VAL SER HIS THR ASN GLU HIS ASN SEQRES 9 A 327 ALA ASN ALA ALA LEU ALA SER LEU ARG ALA TRP LEU LEU SEQRES 10 A 327 SER GLN PRO GLN TYR GLU GLN LEU GLY SER VAL ASN LEU SEQRES 11 A 327 GLN ALA ASP VAL ASP ILE ASP ASP LEU ASN VAL GLN SER SEQRES 12 A 327 GLU ASP PHE PHE PHE ALA ALA PRO ASN GLU TYR ARG GLU SEQRES 13 A 327 CYS ARG THR LEU LEU HIS ALA ALA LEU GLU MET ASN PRO SEQRES 14 A 327 ASN ASP ALA GLN LEU HIS ALA SER LEU GLY VAL LEU TYR SEQRES 15 A 327 ASN LEU SER ASN ASN TYR ASP SER ALA ALA ALA ASN LEU SEQRES 16 A 327 ARG ARG ALA VAL GLU LEU ARG PRO ASP ASP ALA GLN LEU SEQRES 17 A 327 TRP ASN LYS LEU GLY ALA THR LEU ALA ASN GLY ASN ARG SEQRES 18 A 327 PRO GLN GLU ALA LEU ASP ALA TYR ASN ARG ALA LEU ASP SEQRES 19 A 327 ILE ASN PRO GLY TYR VAL ARG VAL MET TYR ASN MET ALA SEQRES 20 A 327 VAL SER TYR SER ASN MET SER GLN TYR ASP LEU ALA ALA SEQRES 21 A 327 LYS GLN LEU VAL ARG ALA ILE TYR MET GLN VAL GLY GLY SEQRES 22 A 327 THR THR PRO THR GLY GLU ALA SER ARG GLU ALA THR ARG SEQRES 23 A 327 SER MET TRP ASP PHE PHE ARG MET LEU LEU ASN VAL MET SEQRES 24 A 327 ASN ARG PRO ASP LEU VAL GLU LEU THR TYR ALA GLN ASN SEQRES 25 A 327 VAL GLU PRO PHE ALA LYS GLU PHE GLY LEU GLN SER MET SEQRES 26 A 327 LEU LEU SEQRES 1 B 7 SAC ASN ARG TRP SER LYS LEU MODRES 3CVQ SAC B 1 SER N-ACETYL-SERINE HET SAC B 1 9 HET GOL A 1 6 HETNAM SAC N-ACETYL-SERINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SAC C5 H9 N O4 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *12(H2 O) HELIX 1 1 PRO A 352 LEU A 362 1 11 HELIX 2 2 ASN A 364 GLU A 379 1 16 HELIX 3 3 ARG A 382 ASN A 396 1 15 HELIX 4 4 LYS A 398 ASP A 413 1 16 HELIX 5 5 ASP A 416 GLU A 430 1 15 HELIX 6 6 ASN A 432 GLN A 447 1 16 HELIX 7 7 TYR A 450 SER A 455 5 6 HELIX 8 8 ALA A 478 GLU A 494 1 17 HELIX 9 9 ASP A 499 SER A 513 1 15 HELIX 10 10 ASN A 515 VAL A 527 1 13 HELIX 11 11 ASP A 533 GLY A 547 1 15 HELIX 12 12 ARG A 549 ASN A 564 1 16 HELIX 13 13 TYR A 567 MET A 581 1 15 HELIX 14 14 GLN A 583 VAL A 599 1 17 HELIX 15 15 SER A 615 MET A 627 1 13 HELIX 16 16 ARG A 629 GLU A 634 1 6 LINK C SAC B 1 N ASN B 2 1555 1555 1.29 SITE 1 AC1 1 TYR A 596 CRYST1 68.794 68.794 230.232 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014536 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004343 0.00000