HEADER LIGASE 19-APR-08 3CVR TITLE CRYSTAL STRUCTURE OF THE FULL LENGTH IPAH3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INVASION PLASMID ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBIQUITIN E3 LIGASE; COMPND 5 EC: 6.3.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI 2A; SOURCE 3 ORGANISM_TAXID: 198214; SOURCE 4 STRAIN: 301; SOURCE 5 GENE: IPAH_3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2 KEYWDS LEUCINE RICH REPEAT AND ALPHA FOLD, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHU,F.SHAO REVDAT 3 13-JUL-11 3CVR 1 VERSN REVDAT 2 16-DEC-08 3CVR 1 JRNL VERSN REVDAT 1 11-NOV-08 3CVR 0 JRNL AUTH Y.ZHU,H.LI,L.HU,J.WANG,Y.ZHOU,Z.PANG,L.LIU,F.SHAO JRNL TITL STRUCTURE OF A SHIGELLA EFFECTOR REVEALS A NEW CLASS OF JRNL TITL 2 UBIQUITIN LIGASES JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 1302 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18997779 JRNL DOI 10.1038/NSMB.1517 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1318 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1788 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3702 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.44000 REMARK 3 B22 (A**2) : -1.44000 REMARK 3 B33 (A**2) : 2.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.446 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.308 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.243 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.245 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3774 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5146 ; 1.160 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 471 ; 5.198 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;41.393 ;24.607 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 600 ;19.601 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.178 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 601 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2873 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1643 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2581 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 97 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2448 ; 0.388 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3827 ; 0.631 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1495 ; 0.952 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1319 ; 1.579 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): -52.9209 -8.7337 5.6515 REMARK 3 T TENSOR REMARK 3 T11: -0.0789 T22: -0.0381 REMARK 3 T33: 0.0189 T12: 0.0208 REMARK 3 T13: -0.0297 T23: -0.1082 REMARK 3 L TENSOR REMARK 3 L11: 1.6713 L22: 2.4536 REMARK 3 L33: 2.7584 L12: -1.6863 REMARK 3 L13: -1.8664 L23: 2.0084 REMARK 3 S TENSOR REMARK 3 S11: 0.0745 S12: 0.1205 S13: -0.1307 REMARK 3 S21: -0.0294 S22: -0.0003 S23: 0.0655 REMARK 3 S31: -0.0310 S32: -0.0723 S33: -0.0742 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 279 A 561 REMARK 3 ORIGIN FOR THE GROUP (A): -14.5568 -20.0934 -21.0466 REMARK 3 T TENSOR REMARK 3 T11: 0.1387 T22: -0.1475 REMARK 3 T33: 0.0868 T12: 0.0165 REMARK 3 T13: 0.2526 T23: -0.0637 REMARK 3 L TENSOR REMARK 3 L11: 1.6838 L22: 0.8839 REMARK 3 L33: 2.3931 L12: -1.0345 REMARK 3 L13: -0.5939 L23: -0.3715 REMARK 3 S TENSOR REMARK 3 S11: 0.1536 S12: 0.1278 S13: 0.0548 REMARK 3 S21: -0.3463 S22: -0.3364 S23: -0.2565 REMARK 3 S31: -0.1773 S32: -0.0109 S33: 0.1828 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-APR-08. REMARK 100 THE RCSB ID CODE IS RCSB047270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-08; 03-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 95; 95 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BSRF; PHOTON FACTORY REMARK 200 BEAMLINE : 3W1A; AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800; 1.0000 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM; ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26107 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 51.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 11.000 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : 0.38000 REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M NACL, 0.1M BIS-TRIS PH5.5, 2.5% REMARK 280 POLYACRYLIC ACID 5100 SODIUM SALT, 0.1 M SODIUM NITRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.93500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 77.09500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 77.09500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.46750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 77.09500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 77.09500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.40250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 77.09500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.09500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.46750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 77.09500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.09500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.40250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.93500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 ILE A 3 REMARK 465 MSE A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 ILE A 7 REMARK 465 ASN A 8 REMARK 465 ASN A 9 REMARK 465 ASN A 10 REMARK 465 PHE A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 SER A 14 REMARK 465 GLN A 15 REMARK 465 ASN A 16 REMARK 465 SER A 17 REMARK 465 PHE A 18 REMARK 465 TYR A 19 REMARK 465 ASN A 20 REMARK 465 THR A 21 REMARK 465 ILE A 22 REMARK 465 SER A 23 REMARK 465 GLY A 24 REMARK 465 VAL A 200 REMARK 465 ARG A 201 REMARK 465 ASN A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 SER A 205 REMARK 465 GLU A 206 REMARK 465 GLU A 207 REMARK 465 TYR A 259 REMARK 465 HIS A 260 REMARK 465 GLY A 261 REMARK 465 SER A 269 REMARK 465 ASP A 270 REMARK 465 GLY A 271 REMARK 465 GLN A 272 REMARK 465 GLN A 273 REMARK 465 ASN A 274 REMARK 465 THR A 275 REMARK 465 LEU A 276 REMARK 465 HIS A 277 REMARK 465 ARG A 278 REMARK 465 GLU A 290 REMARK 465 ASN A 291 REMARK 465 LYS A 292 REMARK 465 GLN A 293 REMARK 465 SER A 294 REMARK 465 GLU A 507 REMARK 465 MSE A 508 REMARK 465 LEU A 509 REMARK 465 GLU A 510 REMARK 465 ASN A 511 REMARK 465 GLU A 512 REMARK 465 TYR A 513 REMARK 465 PRO A 514 REMARK 465 GLN A 515 REMARK 465 ARG A 516 REMARK 465 VAL A 517 REMARK 465 ALA A 518 REMARK 465 ASP A 519 REMARK 465 ARG A 520 REMARK 465 LEU A 521 REMARK 465 LYS A 522 REMARK 465 ALA A 523 REMARK 465 SER A 524 REMARK 465 GLY A 525 REMARK 465 LEU A 526 REMARK 465 SER A 527 REMARK 465 GLY A 528 REMARK 465 ASP A 529 REMARK 465 ALA A 530 REMARK 465 ASP A 531 REMARK 465 ALA A 532 REMARK 465 GLU A 533 REMARK 465 ARG A 534 REMARK 465 GLU A 535 REMARK 465 ALA A 536 REMARK 465 GLY A 537 REMARK 465 ALA A 538 REMARK 465 GLN A 539 REMARK 465 VAL A 540 REMARK 465 PRO A 562 REMARK 465 GLU A 563 REMARK 465 ASN A 564 REMARK 465 GLY A 565 REMARK 465 SER A 566 REMARK 465 GLN A 567 REMARK 465 LEU A 568 REMARK 465 HIS A 569 REMARK 465 HIS A 570 REMARK 465 SER A 571 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 470 THR A 208 OG1 CG2 REMARK 470 SER A 251 OG REMARK 470 GLN A 256 CG CD OE1 NE2 REMARK 470 ASP A 258 CG OD1 OD2 REMARK 470 MSE A 268 CG SE CE REMARK 470 LEU A 280 CG CD1 CD2 REMARK 470 VAL A 284 CG1 CG2 REMARK 470 THR A 285 OG1 CG2 REMARK 470 ASP A 295 CG OD1 OD2 REMARK 470 VAL A 296 CG1 CG2 REMARK 470 SER A 297 OG REMARK 470 GLN A 298 CG CD OE1 NE2 REMARK 470 ILE A 299 CG1 CG2 CD1 REMARK 470 HIS A 301 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 310 CG OD1 REMARK 470 SER A 313 OG REMARK 470 ASP A 358 CG OD1 OD2 REMARK 470 THR A 360 OG1 CG2 REMARK 470 GLU A 361 CG CD OE1 OE2 REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 ASP A 496 CG OD1 OD2 REMARK 470 LEU A 500 CG CD1 CD2 REMARK 470 GLU A 503 CG CD OE1 OE2 REMARK 470 GLN A 504 CG CD OE1 NE2 REMARK 470 LYS A 505 CG CD CE NZ REMARK 470 TYR A 506 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MSE A 541 CG SE CE REMARK 470 ARG A 542 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 543 CG CD OE1 OE2 REMARK 470 GLN A 547 CG CD OE1 NE2 REMARK 470 ILE A 548 CG1 CG2 CD1 REMARK 470 ARG A 550 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 552 CG CD1 CD2 REMARK 470 GLU A 555 CG CD OE1 OE2 REMARK 470 LEU A 557 CG CD1 CD2 REMARK 470 LEU A 559 CG CD1 CD2 REMARK 470 ARG A 560 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 561 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 90 -161.96 -119.31 REMARK 500 ASN A 110 -146.64 -125.80 REMARK 500 VAL A 127 22.03 -140.25 REMARK 500 ASN A 129 62.54 64.24 REMARK 500 ASN A 150 -157.29 -132.14 REMARK 500 MSE A 154 149.80 -172.25 REMARK 500 VAL A 167 21.58 -148.89 REMARK 500 ASN A 170 -144.70 -117.46 REMARK 500 GLN A 171 44.19 -142.46 REMARK 500 PHE A 174 143.57 -173.92 REMARK 500 ASN A 190 -169.03 -129.22 REMARK 500 ASN A 217 -155.19 -112.45 REMARK 500 PRO A 241 25.78 -66.08 REMARK 500 HIS A 305 50.04 -95.02 REMARK 500 THR A 328 89.30 15.98 REMARK 500 ALA A 359 50.44 -103.96 REMARK 500 SER A 362 18.33 -142.49 REMARK 500 ARG A 366 49.15 -153.45 REMARK 500 ASP A 391 49.76 -151.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 327 20.7 L L OUTSIDE RANGE REMARK 500 THR A 328 22.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE CONFLICTS BETWEEN THE CLONED SEQUENCE IN THIS REMARK 999 ENTRY AND THE DATABASE REFERENCE SEQUENCE. THE DEPOSITOR REMARK 999 SUGGESTS THE SEQUENCE CONFLICTS ARE NOT THE MUTATIONS BUT REMARK 999 MAYBE THE REAL RESIDUES IN THE STAIN. DBREF 3CVR A 1 571 UNP Q83RJ4 Q83RJ4_SHIFL 1 571 SEQADV 3CVR ALA A 344 UNP Q83RJ4 THR 344 SEE REMARK 999 SEQADV 3CVR LEU A 500 UNP Q83RJ4 GLN 500 SEE REMARK 999 SEQADV 3CVR PRO A 514 UNP Q83RJ4 SER 514 SEE REMARK 999 SEQADV 3CVR LEU A 552 UNP Q83RJ4 VAL 552 SEE REMARK 999 SEQADV 3CVR PRO A 562 UNP Q83RJ4 SER 562 SEE REMARK 999 SEQRES 1 A 571 MSE SER ILE MSE LEU PRO ILE ASN ASN ASN PHE SER LEU SEQRES 2 A 571 SER GLN ASN SER PHE TYR ASN THR ILE SER GLY THR TYR SEQRES 3 A 571 ALA ASP TYR PHE SER ALA TRP ASP LYS TRP GLU LYS GLN SEQRES 4 A 571 ALA LEU PRO GLY GLU ASN ARG ASN GLU ALA VAL SER LEU SEQRES 5 A 571 LEU LYS GLU CYS LEU ILE ASN GLN PHE SER GLU LEU GLN SEQRES 6 A 571 LEU ASN ARG LEU ASN LEU SER SER LEU PRO ASP ASN LEU SEQRES 7 A 571 PRO PRO GLN ILE THR VAL LEU GLU ILE THR GLN ASN ALA SEQRES 8 A 571 LEU ILE SER LEU PRO GLU LEU PRO ALA SER LEU GLU TYR SEQRES 9 A 571 LEU ASP ALA CYS ASP ASN ARG LEU SER THR LEU PRO GLU SEQRES 10 A 571 LEU PRO ALA SER LEU LYS HIS LEU ASP VAL ASP ASN ASN SEQRES 11 A 571 GLN LEU THR MSE LEU PRO GLU LEU PRO ALA LEU LEU GLU SEQRES 12 A 571 TYR ILE ASN ALA ASP ASN ASN GLN LEU THR MSE LEU PRO SEQRES 13 A 571 GLU LEU PRO THR SER LEU GLU VAL LEU SER VAL ARG ASN SEQRES 14 A 571 ASN GLN LEU THR PHE LEU PRO GLU LEU PRO GLU SER LEU SEQRES 15 A 571 GLU ALA LEU ASP VAL SER THR ASN LEU LEU GLU SER LEU SEQRES 16 A 571 PRO ALA VAL PRO VAL ARG ASN HIS HIS SER GLU GLU THR SEQRES 17 A 571 GLU ILE PHE PHE ARG CYS ARG GLU ASN ARG ILE THR HIS SEQRES 18 A 571 ILE PRO GLU ASN ILE LEU SER LEU ASP PRO THR CYS THR SEQRES 19 A 571 ILE ILE LEU GLU ASP ASN PRO LEU SER SER ARG ILE ARG SEQRES 20 A 571 GLU SER LEU SER GLN GLN THR ALA GLN PRO ASP TYR HIS SEQRES 21 A 571 GLY PRO ARG ILE TYR PHE SER MSE SER ASP GLY GLN GLN SEQRES 22 A 571 ASN THR LEU HIS ARG PRO LEU ALA ASP ALA VAL THR ALA SEQRES 23 A 571 TRP PHE PRO GLU ASN LYS GLN SER ASP VAL SER GLN ILE SEQRES 24 A 571 TRP HIS ALA PHE GLU HIS GLU GLU HIS ALA ASN THR PHE SEQRES 25 A 571 SER ALA PHE LEU ASP ARG LEU SER ASP THR VAL SER ALA SEQRES 26 A 571 ARG ASN THR SER GLY PHE ARG GLU GLN VAL ALA ALA TRP SEQRES 27 A 571 LEU GLU LYS LEU SER ALA SER ALA GLU LEU ARG GLN GLN SEQRES 28 A 571 SER PHE ALA VAL ALA ALA ASP ALA THR GLU SER CYS GLU SEQRES 29 A 571 ASP ARG VAL ALA LEU THR TRP ASN ASN LEU ARG LYS THR SEQRES 30 A 571 LEU LEU VAL HIS GLN ALA SER GLU GLY LEU PHE ASP ASN SEQRES 31 A 571 ASP THR GLY ALA LEU LEU SER LEU GLY ARG GLU MSE PHE SEQRES 32 A 571 ARG LEU GLU ILE LEU GLU ASP ILE ALA ARG ASP LYS VAL SEQRES 33 A 571 ARG THR LEU HIS PHE VAL ASP GLU ILE GLU VAL TYR LEU SEQRES 34 A 571 ALA PHE GLN THR MSE LEU ALA GLU LYS LEU GLN LEU SER SEQRES 35 A 571 THR ALA VAL LYS GLU MSE ARG PHE TYR GLY VAL SER GLY SEQRES 36 A 571 VAL THR ALA ASN ASP LEU ARG THR ALA GLU ALA MSE VAL SEQRES 37 A 571 ARG SER ARG GLU GLU ASN GLU PHE THR ASP TRP PHE SER SEQRES 38 A 571 LEU TRP GLY PRO TRP HIS ALA VAL LEU LYS ARG THR GLU SEQRES 39 A 571 ALA ASP ARG TRP ALA LEU ALA GLU GLU GLN LYS TYR GLU SEQRES 40 A 571 MSE LEU GLU ASN GLU TYR PRO GLN ARG VAL ALA ASP ARG SEQRES 41 A 571 LEU LYS ALA SER GLY LEU SER GLY ASP ALA ASP ALA GLU SEQRES 42 A 571 ARG GLU ALA GLY ALA GLN VAL MSE ARG GLU THR GLU GLN SEQRES 43 A 571 GLN ILE TYR ARG GLN LEU THR ASP GLU VAL LEU ALA LEU SEQRES 44 A 571 ARG LEU PRO GLU ASN GLY SER GLN LEU HIS HIS SER MODRES 3CVR MSE A 134 MET SELENOMETHIONINE MODRES 3CVR MSE A 154 MET SELENOMETHIONINE MODRES 3CVR MSE A 268 MET SELENOMETHIONINE MODRES 3CVR MSE A 402 MET SELENOMETHIONINE MODRES 3CVR MSE A 434 MET SELENOMETHIONINE MODRES 3CVR MSE A 448 MET SELENOMETHIONINE MODRES 3CVR MSE A 467 MET SELENOMETHIONINE MODRES 3CVR MSE A 541 MET SELENOMETHIONINE HET MSE A 134 8 HET MSE A 154 8 HET MSE A 268 5 HET MSE A 402 8 HET MSE A 434 8 HET MSE A 448 8 HET MSE A 467 8 HET MSE A 541 5 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 HOH *39(H2 O) HELIX 1 1 THR A 25 LYS A 38 1 14 HELIX 2 2 ASN A 45 ASN A 59 1 15 HELIX 3 3 PRO A 223 LEU A 229 5 7 HELIX 4 4 SER A 243 GLN A 256 1 14 HELIX 5 5 ALA A 281 ALA A 286 1 6 HELIX 6 6 ASP A 295 ALA A 302 1 8 HELIX 7 7 HIS A 308 THR A 322 1 15 HELIX 8 8 GLY A 330 SER A 345 1 16 HELIX 9 9 SER A 345 ALA A 359 1 15 HELIX 10 10 ARG A 366 SER A 384 1 19 HELIX 11 11 ASP A 391 ARG A 417 1 27 HELIX 12 12 ASP A 423 ALA A 436 1 14 HELIX 13 13 THR A 457 LEU A 482 1 26 HELIX 14 14 TRP A 483 THR A 493 1 11 HELIX 15 15 GLU A 494 LYS A 505 1 12 HELIX 16 16 ARG A 542 ARG A 560 1 19 SHEET 1 A10 GLU A 63 GLN A 65 0 SHEET 2 A10 VAL A 84 GLU A 86 1 O GLU A 86 N LEU A 64 SHEET 3 A10 TYR A 104 ASP A 106 1 O TYR A 104 N LEU A 85 SHEET 4 A10 HIS A 124 ASP A 126 1 O ASP A 126 N LEU A 105 SHEET 5 A10 TYR A 144 ASN A 146 1 O ASN A 146 N LEU A 125 SHEET 6 A10 VAL A 164 SER A 166 1 O SER A 166 N ILE A 145 SHEET 7 A10 ALA A 184 ASP A 186 1 O ASP A 186 N LEU A 165 SHEET 8 A10 ILE A 210 ARG A 213 1 O ARG A 213 N LEU A 185 SHEET 9 A10 CYS A 233 ILE A 236 1 O ILE A 236 N PHE A 212 SHEET 10 A10 ARG A 263 TYR A 265 1 O ARG A 263 N ILE A 235 LINK C THR A 133 N MSE A 134 1555 1555 1.33 LINK C MSE A 134 N LEU A 135 1555 1555 1.33 LINK C THR A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N LEU A 155 1555 1555 1.33 LINK C SER A 267 N MSE A 268 1555 1555 1.34 LINK C GLU A 401 N MSE A 402 1555 1555 1.33 LINK C MSE A 402 N PHE A 403 1555 1555 1.33 LINK C THR A 433 N MSE A 434 1555 1555 1.33 LINK C MSE A 434 N LEU A 435 1555 1555 1.33 LINK C GLU A 447 N MSE A 448 1555 1555 1.33 LINK C MSE A 448 N ARG A 449 1555 1555 1.33 LINK C ALA A 466 N MSE A 467 1555 1555 1.33 LINK C MSE A 467 N VAL A 468 1555 1555 1.33 LINK C MSE A 541 N ARG A 542 1555 1555 1.33 CISPEP 1 PRO A 257 ASP A 258 0 1.01 CISPEP 2 PRO A 279 LEU A 280 0 -1.66 CISPEP 3 PHE A 288 PRO A 289 0 1.07 CISPEP 4 ASN A 327 THR A 328 0 17.41 CISPEP 5 THR A 328 SER A 329 0 3.65 CISPEP 6 SER A 329 GLY A 330 0 17.69 CISPEP 7 ASP A 389 ASN A 390 0 -7.16 CRYST1 154.190 154.190 85.870 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006486 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011646 0.00000