data_3CW5
# 
_entry.id   3CW5 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.377 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   3CW5         pdb_00003cw5 10.2210/pdb3cw5/pdb 
NDB   UR0139       ?            ?                   
RCSB  RCSB047284   ?            ?                   
WWPDB D_1000047284 ?            ?                   
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          3CW6 
_pdbx_database_related.content_type   unspecified 
_pdbx_database_related.details        'E. coli initiator tRNA at pH 8.0' 
# 
_pdbx_database_status.entry_id                        3CW5 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.recvd_initial_deposition_date   2008-04-21 
_pdbx_database_status.SG_entry                        N 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Barraud, P.'  1 
'Schmitt, E.'  2 
'Mechulam, Y.' 3 
'Dardel, F.'   4 
'Tisne, C.'    5 
# 
_citation.id                        primary 
_citation.title                     
'A unique conformation of the anticodon stem-loop is associated with the capacity of tRNAfMet to initiate protein synthesis.' 
_citation.journal_abbrev            'Nucleic Acids Res.' 
_citation.journal_volume            36 
_citation.page_first                4894 
_citation.page_last                 4901 
_citation.year                      2008 
_citation.journal_id_ASTM           NARHAD 
_citation.country                   UK 
_citation.journal_id_ISSN           0305-1048 
_citation.journal_id_CSD            0389 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   18653533 
_citation.pdbx_database_id_DOI      10.1093/nar/gkn462 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Barraud, P.'  1 ? 
primary 'Schmitt, E.'  2 ? 
primary 'Mechulam, Y.' 3 ? 
primary 'Dardel, F.'   4 ? 
primary 'Tisne, C.'    5 ? 
# 
_cell.entry_id           3CW5 
_cell.length_a           93.790 
_cell.length_b           93.790 
_cell.length_c           219.360 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        120.00 
_cell.Z_PDB              12 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         3CW5 
_symmetry.space_group_name_H-M             'P 64 2 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                181 
# 
_entity.id                         1 
_entity.type                       polymer 
_entity.src_method                 man 
_entity.pdbx_description           'Initiator tRNA' 
_entity.formula_weight             24832.918 
_entity.pdbx_number_of_molecules   1 
_entity.pdbx_ec                    ? 
_entity.pdbx_mutation              ? 
_entity.pdbx_fragment              ? 
_entity.details                    ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       
;CGCGGGG(4SU)GGAGCAGCCUGG(H2U)AGCUCGUCGGG(OMC)UCAUAACCCGAAGAUCGUCGG(5MU)(PSU)CAAA
UCCGGCCCCCGCAACCA
;
_entity_poly.pdbx_seq_one_letter_code_can   CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCAACCA 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  C   n 
1 2  G   n 
1 3  C   n 
1 4  G   n 
1 5  G   n 
1 6  G   n 
1 7  G   n 
1 8  4SU n 
1 9  G   n 
1 10 G   n 
1 11 A   n 
1 12 G   n 
1 13 C   n 
1 14 A   n 
1 15 G   n 
1 16 C   n 
1 17 C   n 
1 18 U   n 
1 19 G   n 
1 20 G   n 
1 21 H2U n 
1 22 A   n 
1 23 G   n 
1 24 C   n 
1 25 U   n 
1 26 C   n 
1 27 G   n 
1 28 U   n 
1 29 C   n 
1 30 G   n 
1 31 G   n 
1 32 G   n 
1 33 OMC n 
1 34 U   n 
1 35 C   n 
1 36 A   n 
1 37 U   n 
1 38 A   n 
1 39 A   n 
1 40 C   n 
1 41 C   n 
1 42 C   n 
1 43 G   n 
1 44 A   n 
1 45 A   n 
1 46 G   n 
1 47 A   n 
1 48 U   n 
1 49 C   n 
1 50 G   n 
1 51 U   n 
1 52 C   n 
1 53 G   n 
1 54 G   n 
1 55 5MU n 
1 56 PSU n 
1 57 C   n 
1 58 A   n 
1 59 A   n 
1 60 A   n 
1 61 U   n 
1 62 C   n 
1 63 C   n 
1 64 G   n 
1 65 G   n 
1 66 C   n 
1 67 C   n 
1 68 C   n 
1 69 C   n 
1 70 C   n 
1 71 G   n 
1 72 C   n 
1 73 A   n 
1 74 A   n 
1 75 C   n 
1 76 C   n 
1 77 A   n 
# 
_entity_src_gen.entity_id                          1 
_entity_src_gen.pdbx_src_id                        1 
_entity_src_gen.pdbx_alt_source_flag               sample 
_entity_src_gen.pdbx_seq_type                      ? 
_entity_src_gen.pdbx_beg_seq_num                   ? 
_entity_src_gen.pdbx_end_seq_num                   ? 
_entity_src_gen.gene_src_common_name               ? 
_entity_src_gen.gene_src_genus                     ? 
_entity_src_gen.pdbx_gene_src_gene                 ? 
_entity_src_gen.gene_src_species                   ? 
_entity_src_gen.gene_src_strain                    ? 
_entity_src_gen.gene_src_tissue                    ? 
_entity_src_gen.gene_src_tissue_fraction           ? 
_entity_src_gen.gene_src_details                   ? 
_entity_src_gen.pdbx_gene_src_fragment             ? 
_entity_src_gen.pdbx_gene_src_scientific_name      'Escherichia coli' 
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id     ? 
_entity_src_gen.pdbx_gene_src_variant              ? 
_entity_src_gen.pdbx_gene_src_cell_line            ? 
_entity_src_gen.pdbx_gene_src_atcc                 ? 
_entity_src_gen.pdbx_gene_src_organ                ? 
_entity_src_gen.pdbx_gene_src_organelle            ? 
_entity_src_gen.pdbx_gene_src_cell                 ? 
_entity_src_gen.pdbx_gene_src_cellular_location    ? 
_entity_src_gen.host_org_common_name               ? 
_entity_src_gen.pdbx_host_org_scientific_name      'Escherichia coli' 
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id     ? 
_entity_src_gen.host_org_genus                     ? 
_entity_src_gen.pdbx_host_org_gene                 ? 
_entity_src_gen.pdbx_host_org_organ                ? 
_entity_src_gen.host_org_species                   ? 
_entity_src_gen.pdbx_host_org_tissue               ? 
_entity_src_gen.pdbx_host_org_tissue_fraction      ? 
_entity_src_gen.pdbx_host_org_strain               JM101TR 
_entity_src_gen.pdbx_host_org_variant              ? 
_entity_src_gen.pdbx_host_org_cell_line            ? 
_entity_src_gen.pdbx_host_org_atcc                 ? 
_entity_src_gen.pdbx_host_org_culture_collection   ? 
_entity_src_gen.pdbx_host_org_cell                 ? 
_entity_src_gen.pdbx_host_org_organelle            ? 
_entity_src_gen.pdbx_host_org_cellular_location    ? 
_entity_src_gen.pdbx_host_org_vector_type          plasmid 
_entity_src_gen.pdbx_host_org_vector               ? 
_entity_src_gen.host_org_details                   ? 
_entity_src_gen.expression_system_id               ? 
_entity_src_gen.plasmid_name                       pBSTtRNAfMet 
_entity_src_gen.plasmid_details                    ? 
_entity_src_gen.pdbx_description                   ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    GB 
_struct_ref.db_code                    X70452 
_struct_ref.pdbx_db_accession          312135 
_struct_ref.pdbx_align_begin           1 
_struct_ref.pdbx_seq_one_letter_code   CGCGGGGUGGAGCAGCCUGGNAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUNCAAAUCCGGCCCCCGCAACCA 
_struct_ref.pdbx_db_isoform            ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              3CW5 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 77 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             312135 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  77 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       76 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
4SU 'RNA linking' n "4-THIOURIDINE-5'-MONOPHOSPHATE"       ? 'C9 H13 N2 O8 P S' 340.247 
5MU 'RNA linking' n 
;5-METHYLURIDINE 5'-MONOPHOSPHATE
;
? 'C10 H15 N2 O9 P'  338.208 
A   'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE"           ? 'C10 H14 N5 O7 P'  347.221 
C   'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"            ? 'C9 H14 N3 O8 P'   323.197 
G   'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE"           ? 'C10 H14 N5 O8 P'  363.221 
H2U 'RNA linking' n "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE"  ? 'C9 H15 N2 O9 P'   326.197 
OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P'  337.223 
PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE"       ? 'C9 H13 N2 O9 P'   324.181 
U   'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"             ? 'C9 H13 N2 O9 P'   324.181 
# 
_exptl.crystals_number   1 
_exptl.entry_id          3CW5 
_exptl.method            'X-RAY DIFFRACTION' 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      5.61 
_exptl_crystal.density_percent_sol   78.07 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION' 
_exptl_crystal_grow.pH              4.6 
_exptl_crystal_grow.temp            292 
_exptl_crystal_grow.pdbx_details    '2.0 M Ammonium Sulphate, pH 4.6, vapor diffusion, temperature 292K' 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.details 
1 1 1 '(NH4)2SO4' ? ? ? 
1 2 2 '(NH4)2SO4' ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               ? 
_diffrn_detector.type                   ? 
_diffrn_detector.pdbx_collection_date   2006-11-25 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.931 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'ESRF BEAMLINE ID14-3' 
_diffrn_source.pdbx_wavelength_list        0.931 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_synchrotron_site       ESRF 
_diffrn_source.pdbx_synchrotron_beamline   ID14-3 
# 
_reflns.entry_id                     3CW5 
_reflns.d_resolution_high            3.100 
_reflns.d_resolution_low             39.918 
_reflns.number_all                   10213 
_reflns.number_obs                   10063 
_reflns.pdbx_Rmerge_I_obs            0.099 
_reflns.pdbx_netI_over_sigmaI        3.800 
_reflns.pdbx_Rsym_value              0.099 
_reflns.pdbx_redundancy              7.900 
_reflns.percent_possible_obs         91.400 
_reflns.observed_criterion_sigma_F   ? 
_reflns.observed_criterion_sigma_I   ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
# 
loop_
_reflns_shell.d_res_high 
_reflns_shell.d_res_low 
_reflns_shell.number_measured_obs 
_reflns_shell.number_measured_all 
_reflns_shell.number_unique_obs 
_reflns_shell.Rmerge_I_obs 
_reflns_shell.meanI_over_sigI_obs 
_reflns_shell.pdbx_Rsym_value 
_reflns_shell.pdbx_chi_squared 
_reflns_shell.pdbx_redundancy 
_reflns_shell.percent_possible_obs 
_reflns_shell.number_unique_all 
_reflns_shell.percent_possible_all 
_reflns_shell.pdbx_ordinal 
_reflns_shell.pdbx_diffrn_id 
3.10 3.27  ? 2894  ? 0.476 1.5  0.476 ? 3.20 ? 899  59.80  1  1 
3.27 3.47  ? 7200  ? 0.407 1.8  0.407 ? 5.80 ? 1250 85.80  2  1 
3.47 3.71  ? 11202 ? 0.351 2.1  0.351 ? 8.30 ? 1345 96.50  3  1 
3.71 4.00  ? 11270 ? 0.249 3.0  0.249 ? 8.80 ? 1286 98.70  4  1 
4.00 4.38  ? 10640 ? 0.159 4.7  0.159 ? 8.80 ? 1208 99.30  5  1 
4.38 4.90  ? 9832  ? 0.096 7.2  0.096 ? 9.00 ? 1098 99.30  6  1 
4.90 5.66  ? 8911  ? 0.076 9.0  0.076 ? 9.00 ? 994  99.90  7  1 
5.66 6.93  ? 7963  ? 0.055 11.4 0.055 ? 9.30 ? 860  100.00 8  1 
6.93 9.80  ? 6374  ? 0.040 14.7 0.040 ? 9.20 ? 696  100.00 9  1 
9.80 76.25 ? 3185  ? 0.053 5.2  0.053 ? 7.50 ? 427  98.40  10 1 
# 
_refine.entry_id                                 3CW5 
_refine.ls_d_res_high                            3.100 
_refine.ls_d_res_low                             39.918 
_refine.pdbx_ls_sigma_F                          0.00 
_refine.ls_percent_reflns_obs                    92.690 
_refine.ls_number_reflns_obs                     10063 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.ls_R_factor_obs                          0.244 
_refine.ls_R_factor_R_work                       0.241 
_refine.ls_R_factor_R_free                       0.271 
_refine.ls_percent_reflns_R_free                 10.000 
_refine.ls_number_reflns_R_free                  1020 
_refine.B_iso_mean                               19.463 
_refine.aniso_B[1][1]                            -0.520 
_refine.aniso_B[2][2]                            -0.520 
_refine.aniso_B[3][3]                            0.780 
_refine.aniso_B[1][2]                            -0.260 
_refine.aniso_B[1][3]                            0.000 
_refine.aniso_B[2][3]                            0.000 
_refine.correlation_coeff_Fo_to_Fc               0.907 
_refine.correlation_coeff_Fo_to_Fc_free          0.884 
_refine.pdbx_overall_ESU_R                       0.629 
_refine.pdbx_overall_ESU_R_Free                  0.377 
_refine.overall_SU_ML                            0.285 
_refine.overall_SU_B                             35.960 
_refine.solvent_model_details                    MASK 
_refine.pdbx_solvent_vdw_probe_radii             1.200 
_refine.pdbx_solvent_ion_probe_radii             0.800 
_refine.pdbx_solvent_shrinkage_radii             0.800 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD' 
_refine.pdbx_ls_sigma_I                          ? 
_refine.ls_number_reflns_all                     10213 
_refine.ls_R_factor_all                          ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.pdbx_starting_model                      'E. coli tRNAfMet from 2FMT' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.solvent_model_param_bsol                 ? 
_refine.solvent_model_param_ksol                 ? 
_refine.occupancy_max                            ? 
_refine.occupancy_min                            ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.details                                  ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_TLS_residual_ADP_flag               'LIKELY RESIDUAL' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   1645 
_refine_hist.pdbx_number_atoms_ligand         0 
_refine_hist.number_atoms_solvent             0 
_refine_hist.number_atoms_total               1645 
_refine_hist.d_res_high                       3.100 
_refine_hist.d_res_low                        39.918 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.number 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
r_bond_refined_d         1837 0.009 0.021 ? 'X-RAY DIFFRACTION' ? 
r_angle_refined_deg      2863 1.735 3.000 ? 'X-RAY DIFFRACTION' ? 
r_chiral_restr           364  0.068 0.200 ? 'X-RAY DIFFRACTION' ? 
r_gen_planes_refined     799  0.005 0.020 ? 'X-RAY DIFFRACTION' ? 
r_nbd_refined            930  0.194 0.200 ? 'X-RAY DIFFRACTION' ? 
r_nbtor_refined          1188 0.293 0.200 ? 'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_refined    67   0.204 0.200 ? 'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_refined   56   0.241 0.200 ? 'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_refined 4    0.301 0.200 ? 'X-RAY DIFFRACTION' ? 
r_scbond_it              2598 0.756 3.000 ? 'X-RAY DIFFRACTION' ? 
r_scangle_it             2863 1.413 4.500 ? 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.d_res_high                       3.100 
_refine_ls_shell.d_res_low                        3.180 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.percent_reflns_obs               65.640 
_refine_ls_shell.number_reflns_R_work             464 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.R_factor_R_work                  0.328 
_refine_ls_shell.R_factor_R_free                  0.434 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             50 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.number_reflns_all                514 
_refine_ls_shell.number_reflns_obs                ? 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
# 
_struct.entry_id                  3CW5 
_struct.title                     'E. coli Initiator tRNA' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            N 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        3CW5 
_struct_keywords.text            'tRNA, initiator, RNA' 
_struct_keywords.pdbx_keywords   RNA 
# 
_struct_asym.id                            A 
_struct_asym.pdbx_blank_PDB_chainid_flag   N 
_struct_asym.pdbx_modified                 N 
_struct_asym.entity_id                     1 
_struct_asym.details                       ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A G   7  "O3'" ? ? ? 1_555 A 4SU 8  P  ? ? A G   7  A 4SU 8  1_555 ? ? ? ? ? ? ?                       
1.596 ? ? 
covale2  covale both ? A 4SU 8  "O3'" ? ? ? 1_555 A G   9  P  ? ? A 4SU 8  A G   9  1_555 ? ? ? ? ? ? ?                       
1.595 ? ? 
covale3  covale both ? A G   20 "O3'" ? ? ? 1_555 A H2U 21 P  ? ? A G   19 A H2U 20 1_555 ? ? ? ? ? ? ?                       
1.593 ? ? 
covale4  covale both ? A H2U 21 "O3'" ? ? ? 1_555 A A   22 P  ? ? A H2U 20 A A   21 1_555 ? ? ? ? ? ? ?                       
1.606 ? ? 
covale5  covale both ? A G   32 "O3'" ? ? ? 1_555 A OMC 33 P  ? ? A G   31 A OMC 32 1_555 ? ? ? ? ? ? ?                       
1.601 ? ? 
covale6  covale both ? A OMC 33 "O3'" ? ? ? 1_555 A U   34 P  ? ? A OMC 32 A U   33 1_555 ? ? ? ? ? ? ?                       
1.592 ? ? 
covale7  covale both ? A G   54 "O3'" ? ? ? 1_555 A 5MU 55 P  ? ? A G   53 A 5MU 54 1_555 ? ? ? ? ? ? ?                       
1.603 ? ? 
covale8  covale both ? A 5MU 55 "O3'" ? ? ? 1_555 A PSU 56 P  ? ? A 5MU 54 A PSU 55 1_555 ? ? ? ? ? ? ?                       
1.602 ? ? 
covale9  covale both ? A PSU 56 "O3'" ? ? ? 1_555 A C   57 P  ? ? A PSU 55 A C   56 1_555 ? ? ? ? ? ? ?                       
1.602 ? ? 
hydrog1  hydrog ?    ? A G   2  N1    ? ? ? 1_555 A C   72 N3 ? ? A G   2  A C   71 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog2  hydrog ?    ? A G   2  N2    ? ? ? 1_555 A C   72 O2 ? ? A G   2  A C   71 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog3  hydrog ?    ? A G   2  O6    ? ? ? 1_555 A C   72 N4 ? ? A G   2  A C   71 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog4  hydrog ?    ? A C   3  N3    ? ? ? 1_555 A G   71 N1 ? ? A C   3  A G   70 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog5  hydrog ?    ? A C   3  N4    ? ? ? 1_555 A G   71 O6 ? ? A C   3  A G   70 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog6  hydrog ?    ? A C   3  O2    ? ? ? 1_555 A G   71 N2 ? ? A C   3  A G   70 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog7  hydrog ?    ? A G   4  N1    ? ? ? 1_555 A C   70 N3 ? ? A G   4  A C   69 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog8  hydrog ?    ? A G   4  N2    ? ? ? 1_555 A C   70 O2 ? ? A G   4  A C   69 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog9  hydrog ?    ? A G   4  O6    ? ? ? 1_555 A C   70 N4 ? ? A G   4  A C   69 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog10 hydrog ?    ? A G   5  N1    ? ? ? 1_555 A C   69 N3 ? ? A G   5  A C   68 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog11 hydrog ?    ? A G   5  N2    ? ? ? 1_555 A C   69 O2 ? ? A G   5  A C   68 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog12 hydrog ?    ? A G   5  O6    ? ? ? 1_555 A C   69 N4 ? ? A G   5  A C   68 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog13 hydrog ?    ? A G   6  N1    ? ? ? 1_555 A C   68 N3 ? ? A G   6  A C   67 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog14 hydrog ?    ? A G   6  N2    ? ? ? 1_555 A C   68 O2 ? ? A G   6  A C   67 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog15 hydrog ?    ? A G   6  O6    ? ? ? 1_555 A C   68 N4 ? ? A G   6  A C   67 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog16 hydrog ?    ? A G   7  N1    ? ? ? 1_555 A C   67 N3 ? ? A G   7  A C   66 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog17 hydrog ?    ? A G   7  N2    ? ? ? 1_555 A C   67 O2 ? ? A G   7  A C   66 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog18 hydrog ?    ? A G   7  O6    ? ? ? 1_555 A C   67 N4 ? ? A G   7  A C   66 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog19 hydrog ?    ? A 4SU 8  N3    ? ? ? 1_555 A A   14 N7 ? ? A 4SU 8  A A   14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN'    ? ? 
? 
hydrog20 hydrog ?    ? A 4SU 8  O2    ? ? ? 1_555 A A   14 N6 ? ? A 4SU 8  A A   14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN'    ? ? 
? 
hydrog21 hydrog ?    ? A G   10 N1    ? ? ? 1_555 A C   26 N3 ? ? A G   10 A C   25 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog22 hydrog ?    ? A G   10 N2    ? ? ? 1_555 A C   26 O2 ? ? A G   10 A C   25 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog23 hydrog ?    ? A G   10 O6    ? ? ? 1_555 A C   26 N4 ? ? A G   10 A C   25 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog24 hydrog ?    ? A G   10 O6    ? ? ? 1_555 A G   46 N2 ? ? A G   10 A G   45 1_555 ? ? ? ? ? ? 'G-G MISPAIR'           ? ? 
? 
hydrog25 hydrog ?    ? A A   11 N1    ? ? ? 1_555 A U   25 N3 ? ? A A   11 A U   24 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog26 hydrog ?    ? A A   11 N6    ? ? ? 1_555 A U   25 O4 ? ? A A   11 A U   24 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog27 hydrog ?    ? A G   12 N1    ? ? ? 1_555 A C   24 N3 ? ? A G   12 A C   23 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog28 hydrog ?    ? A G   12 N2    ? ? ? 1_555 A C   24 O2 ? ? A G   12 A C   23 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog29 hydrog ?    ? A G   12 O6    ? ? ? 1_555 A C   24 N4 ? ? A G   12 A C   23 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog30 hydrog ?    ? A C   13 N3    ? ? ? 1_555 A G   23 N1 ? ? A C   13 A G   22 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog31 hydrog ?    ? A C   13 N4    ? ? ? 1_555 A G   23 O6 ? ? A C   13 A G   22 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog32 hydrog ?    ? A C   13 O2    ? ? ? 1_555 A G   23 N2 ? ? A C   13 A G   22 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog33 hydrog ?    ? A G   15 N1    ? ? ? 1_555 A C   49 O2 ? ? A G   15 A C   48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? 
? 
hydrog34 hydrog ?    ? A G   15 N2    ? ? ? 1_555 A C   49 N3 ? ? A G   15 A C   48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? 
? 
hydrog35 hydrog ?    ? A G   19 N1    ? ? ? 1_555 A PSU 56 O4 ? ? A G   18 A PSU 55 1_555 ? ? ? ? ? ? 'G-PSU MISPAIR'         ? ? 
? 
hydrog36 hydrog ?    ? A G   20 N1    ? ? ? 1_555 A C   57 N3 ? ? A G   19 A C   56 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog37 hydrog ?    ? A G   20 N2    ? ? ? 1_555 A C   57 O2 ? ? A G   19 A C   56 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog38 hydrog ?    ? A G   20 O6    ? ? ? 1_555 A C   57 N4 ? ? A G   19 A C   56 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog39 hydrog ?    ? A G   23 N7    ? ? ? 1_555 A A   47 N6 ? ? A G   22 A A   46 1_555 ? ? ? ? ? ? 'G-A MISPAIR'           ? ? 
? 
hydrog40 hydrog ?    ? A G   27 N1    ? ? ? 1_555 A A   45 N1 ? ? A G   26 A A   44 1_555 ? ? ? ? ? ? TYPE_8_PAIR             ? ? 
? 
hydrog41 hydrog ?    ? A G   27 O6    ? ? ? 1_555 A A   45 N6 ? ? A G   26 A A   44 1_555 ? ? ? ? ? ? TYPE_8_PAIR             ? ? 
? 
hydrog42 hydrog ?    ? A U   28 N3    ? ? ? 1_555 A A   44 N1 ? ? A U   27 A A   43 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog43 hydrog ?    ? A U   28 O4    ? ? ? 1_555 A A   44 N6 ? ? A U   27 A A   43 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog44 hydrog ?    ? A C   29 N3    ? ? ? 1_555 A G   43 N1 ? ? A C   28 A G   42 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog45 hydrog ?    ? A C   29 N4    ? ? ? 1_555 A G   43 O6 ? ? A C   28 A G   42 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog46 hydrog ?    ? A C   29 O2    ? ? ? 1_555 A G   43 N2 ? ? A C   28 A G   42 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog47 hydrog ?    ? A G   30 N7    ? ? ? 1_555 A A   38 N6 ? ? A G   29 A A   37 1_555 ? ? ? ? ? ? 'G-A MISPAIR'           ? ? 
? 
hydrog48 hydrog ?    ? A G   30 N1    ? ? ? 1_555 A C   42 N3 ? ? A G   29 A C   41 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog49 hydrog ?    ? A G   30 N2    ? ? ? 1_555 A C   42 O2 ? ? A G   29 A C   41 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog50 hydrog ?    ? A G   30 O6    ? ? ? 1_555 A C   42 N4 ? ? A G   29 A C   41 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog51 hydrog ?    ? A G   31 N1    ? ? ? 1_555 A C   41 N3 ? ? A G   30 A C   40 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog52 hydrog ?    ? A G   31 N2    ? ? ? 1_555 A C   41 O2 ? ? A G   30 A C   40 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog53 hydrog ?    ? A G   31 O6    ? ? ? 1_555 A C   41 N4 ? ? A G   30 A C   40 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog54 hydrog ?    ? A G   32 N1    ? ? ? 1_555 A C   40 N3 ? ? A G   31 A C   39 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog55 hydrog ?    ? A G   32 N2    ? ? ? 1_555 A C   40 O2 ? ? A G   31 A C   39 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog56 hydrog ?    ? A G   32 O6    ? ? ? 1_555 A C   40 N4 ? ? A G   31 A C   39 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog57 hydrog ?    ? A OMC 33 O2    ? ? ? 1_555 A A   39 N6 ? ? A OMC 32 A A   38 1_555 ? ? ? ? ? ? 'OMC-A MISPAIR'         ? ? 
? 
hydrog58 hydrog ?    ? A G   50 N1    ? ? ? 1_555 A C   66 N3 ? ? A G   49 A C   65 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog59 hydrog ?    ? A G   50 N2    ? ? ? 1_555 A C   66 O2 ? ? A G   49 A C   65 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog60 hydrog ?    ? A G   50 O6    ? ? ? 1_555 A C   66 N4 ? ? A G   49 A C   65 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog61 hydrog ?    ? A U   51 N3    ? ? ? 1_555 A G   65 O6 ? ? A U   50 A G   64 1_555 ? ? ? ? ? ? TYPE_28_PAIR            ? ? 
? 
hydrog62 hydrog ?    ? A U   51 O2    ? ? ? 1_555 A G   65 N1 ? ? A U   50 A G   64 1_555 ? ? ? ? ? ? TYPE_28_PAIR            ? ? 
? 
hydrog63 hydrog ?    ? A C   52 N3    ? ? ? 1_555 A G   64 N1 ? ? A C   51 A G   63 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog64 hydrog ?    ? A C   52 N4    ? ? ? 1_555 A G   64 O6 ? ? A C   51 A G   63 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog65 hydrog ?    ? A C   52 O2    ? ? ? 1_555 A G   64 N2 ? ? A C   51 A G   63 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog66 hydrog ?    ? A G   53 N1    ? ? ? 1_555 A C   63 N3 ? ? A G   52 A C   62 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog67 hydrog ?    ? A G   53 N2    ? ? ? 1_555 A C   63 O2 ? ? A G   52 A C   62 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog68 hydrog ?    ? A G   53 O6    ? ? ? 1_555 A C   63 N4 ? ? A G   52 A C   62 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog69 hydrog ?    ? A G   54 N1    ? ? ? 1_555 A C   62 N3 ? ? A G   53 A C   61 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog70 hydrog ?    ? A G   54 N2    ? ? ? 1_555 A C   62 O2 ? ? A G   53 A C   61 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog71 hydrog ?    ? A G   54 O6    ? ? ? 1_555 A C   62 N4 ? ? A G   53 A C   61 1_555 ? ? ? ? ? ? WATSON-CRICK            ? ? 
? 
hydrog72 hydrog ?    ? A 5MU 55 N3    ? ? ? 1_555 A A   59 N7 ? ? A 5MU 54 A A   58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN'    ? ? 
? 
hydrog73 hydrog ?    ? A 5MU 55 O2    ? ? ? 1_555 A A   59 N6 ? ? A 5MU 54 A A   58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN'    ? ? 
? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
_atom_sites.entry_id                    3CW5 
_atom_sites.fract_transf_matrix[1][1]   0.010662 
_atom_sites.fract_transf_matrix[1][2]   0.006156 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.012312 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.004559 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
S 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  C   1  1  1  C   C   A . n 
A 1 2  G   2  2  2  G   G   A . n 
A 1 3  C   3  3  3  C   C   A . n 
A 1 4  G   4  4  4  G   G   A . n 
A 1 5  G   5  5  5  G   G   A . n 
A 1 6  G   6  6  6  G   G   A . n 
A 1 7  G   7  7  7  G   G   A . n 
A 1 8  4SU 8  8  8  4SU 4SU A . n 
A 1 9  G   9  9  9  G   G   A . n 
A 1 10 G   10 10 10 G   G   A . n 
A 1 11 A   11 11 11 A   A   A . n 
A 1 12 G   12 12 12 G   G   A . n 
A 1 13 C   13 13 13 C   C   A . n 
A 1 14 A   14 14 14 A   A   A . n 
A 1 15 G   15 15 15 G   G   A . n 
A 1 16 C   16 16 16 C   C   A . n 
A 1 17 C   17 17 17 C   C   A . n 
A 1 18 U   18 17 17 U   U   A A n 
A 1 19 G   19 18 18 G   G   A . n 
A 1 20 G   20 19 19 G   G   A . n 
A 1 21 H2U 21 20 20 H2U H2U A . n 
A 1 22 A   22 21 21 A   A   A . n 
A 1 23 G   23 22 22 G   G   A . n 
A 1 24 C   24 23 23 C   C   A . n 
A 1 25 U   25 24 24 U   U   A . n 
A 1 26 C   26 25 25 C   C   A . n 
A 1 27 G   27 26 26 G   G   A . n 
A 1 28 U   28 27 27 U   U   A . n 
A 1 29 C   29 28 28 C   C   A . n 
A 1 30 G   30 29 29 G   G   A . n 
A 1 31 G   31 30 30 G   G   A . n 
A 1 32 G   32 31 31 G   G   A . n 
A 1 33 OMC 33 32 32 OMC OMC A . n 
A 1 34 U   34 33 33 U   U   A . n 
A 1 35 C   35 34 34 C   C   A . n 
A 1 36 A   36 35 35 A   A   A . n 
A 1 37 U   37 36 36 U   U   A . n 
A 1 38 A   38 37 37 A   A   A . n 
A 1 39 A   39 38 38 A   A   A . n 
A 1 40 C   40 39 39 C   C   A . n 
A 1 41 C   41 40 40 C   C   A . n 
A 1 42 C   42 41 41 C   C   A . n 
A 1 43 G   43 42 42 G   G   A . n 
A 1 44 A   44 43 43 A   A   A . n 
A 1 45 A   45 44 44 A   A   A . n 
A 1 46 G   46 45 45 G   G   A . n 
A 1 47 A   47 46 46 A   A   A . n 
A 1 48 U   48 47 47 U   U   A . n 
A 1 49 C   49 48 48 C   C   A . n 
A 1 50 G   50 49 49 G   G   A . n 
A 1 51 U   51 50 50 U   U   A . n 
A 1 52 C   52 51 51 C   C   A . n 
A 1 53 G   53 52 52 G   G   A . n 
A 1 54 G   54 53 53 G   G   A . n 
A 1 55 5MU 55 54 54 5MU 5MU A . n 
A 1 56 PSU 56 55 55 PSU PSU A . n 
A 1 57 C   57 56 56 C   C   A . n 
A 1 58 A   58 57 57 A   A   A . n 
A 1 59 A   59 58 58 A   A   A . n 
A 1 60 A   60 59 59 A   A   A . n 
A 1 61 U   61 60 60 U   U   A . n 
A 1 62 C   62 61 61 C   C   A . n 
A 1 63 C   63 62 62 C   C   A . n 
A 1 64 G   64 63 63 G   G   A . n 
A 1 65 G   65 64 64 G   G   A . n 
A 1 66 C   66 65 65 C   C   A . n 
A 1 67 C   67 66 66 C   C   A . n 
A 1 68 C   68 67 67 C   C   A . n 
A 1 69 C   69 68 68 C   C   A . n 
A 1 70 C   70 69 69 C   C   A . n 
A 1 71 G   71 70 70 G   G   A . n 
A 1 72 C   72 71 71 C   C   A . n 
A 1 73 A   73 72 72 A   A   A . n 
A 1 74 A   74 73 73 A   A   A . n 
A 1 75 C   75 74 74 C   C   A . n 
A 1 76 C   76 75 75 C   C   A . n 
A 1 77 A   77 76 76 A   A   A . n 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1 A 4SU 8  A 4SU 8  ? U "4-THIOURIDINE-5'-MONOPHOSPHATE"       
2 A H2U 21 A H2U 20 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE"  
3 A OMC 33 A OMC 32 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 
4 A 5MU 55 A 5MU 54 ? U 
;5-METHYLURIDINE 5'-MONOPHOSPHATE
;
5 A PSU 56 A PSU 55 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE"       
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_and_software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   monomeric 
_pdbx_struct_assembly.oligomeric_count     1 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2008-09-02 
2 'Structure model' 1 1 2011-07-13 
3 'Structure model' 1 2 2023-08-30 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' Advisory                    
2 2 'Structure model' 'Version format compliance' 
3 3 'Structure model' 'Data collection'           
4 3 'Structure model' 'Database references'       
5 3 'Structure model' 'Derived calculations'      
6 3 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' chem_comp_atom                
2 3 'Structure model' chem_comp_bond                
3 3 'Structure model' database_2                    
4 3 'Structure model' pdbx_database_related         
5 3 'Structure model' pdbx_initial_refinement_model 
6 3 'Structure model' struct_conn                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 3 'Structure model' '_database_2.pdbx_DOI'                
2 3 'Structure model' '_database_2.pdbx_database_accession' 
3 3 'Structure model' '_pdbx_database_related.content_type' 
4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
# 
_pdbx_refine_tls.id               1 
_pdbx_refine_tls.details          ? 
_pdbx_refine_tls.method           refined 
_pdbx_refine_tls.origin_x         -35.8691 
_pdbx_refine_tls.origin_y         18.9218 
_pdbx_refine_tls.origin_z         -9.0394 
_pdbx_refine_tls.T[1][1]          0.2972 
_pdbx_refine_tls.T[2][2]          -0.2817 
_pdbx_refine_tls.T[3][3]          -0.1013 
_pdbx_refine_tls.T[1][2]          0.0267 
_pdbx_refine_tls.T[1][3]          0.0153 
_pdbx_refine_tls.T[2][3]          0.0640 
_pdbx_refine_tls.L[1][1]          2.3673 
_pdbx_refine_tls.L[2][2]          2.3354 
_pdbx_refine_tls.L[3][3]          2.3835 
_pdbx_refine_tls.L[1][2]          -0.1272 
_pdbx_refine_tls.L[1][3]          -0.8289 
_pdbx_refine_tls.L[2][3]          -1.8874 
_pdbx_refine_tls.S[1][1]          0.2628 
_pdbx_refine_tls.S[2][2]          -0.1983 
_pdbx_refine_tls.S[3][3]          -0.0645 
_pdbx_refine_tls.S[1][2]          0.3075 
_pdbx_refine_tls.S[1][3]          -0.0302 
_pdbx_refine_tls.S[2][3]          -0.5131 
_pdbx_refine_tls.S[2][1]          -0.5825 
_pdbx_refine_tls.S[3][1]          -0.0674 
_pdbx_refine_tls.S[3][2]          0.2421 
_pdbx_refine_tls.pdbx_refine_id   'X-RAY DIFFRACTION' 
# 
_pdbx_refine_tls_group.id                  1 
_pdbx_refine_tls_group.refine_tls_id       1 
_pdbx_refine_tls_group.beg_auth_asym_id    A 
_pdbx_refine_tls_group.end_auth_asym_id    A 
_pdbx_refine_tls_group.end_auth_seq_id     76 
_pdbx_refine_tls_group.selection           ? 
_pdbx_refine_tls_group.beg_auth_seq_id     1 
_pdbx_refine_tls_group.beg_label_asym_id   A 
_pdbx_refine_tls_group.beg_label_seq_id    1 
_pdbx_refine_tls_group.end_label_asym_id   A 
_pdbx_refine_tls_group.end_label_seq_id    77 
_pdbx_refine_tls_group.pdbx_refine_id      'X-RAY DIFFRACTION' 
_pdbx_refine_tls_group.selection_details   ? 
# 
loop_
_software.name 
_software.version 
_software.date 
_software.type 
_software.contact_author 
_software.contact_author_email 
_software.classification 
_software.location 
_software.language 
_software.citation_id 
_software.pdbx_ordinal 
MOSFLM      .      ?                    package 'A.G.W. Leslie'   andrew@mrc-lmb.cam.ac.uk 'data reduction'  
http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ?          ? 1 
SCALA       3.2.25 21/9/2006            other   'Phil Evans'      pre@mrc-lmb.cam.ac.uk    'data scaling'    
http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 2 
REFMAC      .      ?                    program 'Murshudov, G.N.' ccp4@dl.ac.uk            refinement        
http://www.ccp4.ac.uk/main.html            Fortran_77 ? 3 
PDB_EXTRACT 3.005  'September 10, 2007' package PDB               sw-help@rcsb.rutgers.edu 'data extraction' 
http://pdb.rutgers.edu/software/           C++        ? 4 
PHASER      .      ?                    ?       ?                 ?                        phasing           ? ?          ? 5 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1 1 P     A C 1  ? ? OP3   A C 1  ? ? 1.480 1.607 -0.127 0.012 N 
2 1 "O4'" A A 76 ? ? "C1'" A A 76 ? ? 1.511 1.415 0.096  0.012 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 OP1   A C 1  ? ? P     A C 1  ? ? OP2   A C 1  ? ? 106.20 119.60 -13.40 1.50 N 
2  1 "O5'" A G 7  ? ? "C5'" A G 7  ? ? "C4'" A G 7  ? ? 103.97 109.40 -5.43  0.80 N 
3  1 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1    A C 17 ? ? 113.76 108.50 5.26   0.70 N 
4  1 N1    A C 17 ? ? C2    A C 17 ? ? O2    A C 17 ? ? 123.13 118.90 4.23   0.60 N 
5  1 N3    A C 17 ? ? C2    A C 17 ? ? O2    A C 17 ? ? 117.32 121.90 -4.58  0.70 N 
6  1 "C3'" A U 24 ? ? "O3'" A U 24 ? ? P     A C 25 ? ? 111.71 119.70 -7.99  1.20 Y 
7  1 "O4'" A A 58 ? ? "C1'" A A 58 ? ? N9    A A 58 ? ? 101.79 108.20 -6.41  0.80 N 
8  1 "C1'" A A 76 ? ? "O4'" A A 76 ? ? "C4'" A A 76 ? ? 101.41 109.70 -8.29  0.70 N 
9  1 "C4'" A A 76 ? ? "C3'" A A 76 ? ? "C2'" A A 76 ? ? 96.23  102.60 -6.37  1.00 N 
10 1 "O4'" A A 76 ? ? "C1'" A A 76 ? ? N9    A A 76 ? ? 117.13 108.50 8.63   0.70 N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
4SU N1     N N N 1   
4SU C2     C N N 2   
4SU N3     N N N 3   
4SU C4     C N N 4   
4SU C5     C N N 5   
4SU C6     C N N 6   
4SU O2     O N N 7   
4SU S4     S N N 8   
4SU "C1'"  C N R 9   
4SU "C2'"  C N R 10  
4SU "O2'"  O N N 11  
4SU "C3'"  C N S 12  
4SU "C4'"  C N R 13  
4SU "O3'"  O N N 14  
4SU "O4'"  O N N 15  
4SU "C5'"  C N N 16  
4SU "O5'"  O N N 17  
4SU P      P N N 18  
4SU OP1    O N N 19  
4SU OP2    O N N 20  
4SU OP3    O N N 21  
4SU HN3    H N N 22  
4SU H5     H N N 23  
4SU H6     H N N 24  
4SU "H1'"  H N N 25  
4SU "H2'"  H N N 26  
4SU "HO2'" H N N 27  
4SU "H3'"  H N N 28  
4SU "H4'"  H N N 29  
4SU "HO3'" H N N 30  
4SU "H5'"  H N N 31  
4SU "H5''" H N N 32  
4SU HOP2   H N N 33  
4SU HOP3   H N N 34  
5MU N1     N N N 35  
5MU C2     C N N 36  
5MU N3     N N N 37  
5MU C4     C N N 38  
5MU C5     C N N 39  
5MU C5M    C N N 40  
5MU C6     C N N 41  
5MU O2     O N N 42  
5MU O4     O N N 43  
5MU "C1'"  C N R 44  
5MU "C2'"  C N R 45  
5MU "O2'"  O N N 46  
5MU "C3'"  C N S 47  
5MU "C4'"  C N R 48  
5MU "O3'"  O N N 49  
5MU "O4'"  O N N 50  
5MU "C5'"  C N N 51  
5MU "O5'"  O N N 52  
5MU P      P N N 53  
5MU OP1    O N N 54  
5MU OP2    O N N 55  
5MU OP3    O N N 56  
5MU HN3    H N N 57  
5MU H71    H N N 58  
5MU H72    H N N 59  
5MU H73    H N N 60  
5MU H6     H N N 61  
5MU "H1'"  H N N 62  
5MU "H2'"  H N N 63  
5MU "HO2'" H N N 64  
5MU "H3'"  H N N 65  
5MU "H4'"  H N N 66  
5MU "HO3'" H N N 67  
5MU "H5'"  H N N 68  
5MU "H5''" H N N 69  
5MU HOP2   H N N 70  
5MU HOP3   H N N 71  
A   OP3    O N N 72  
A   P      P N N 73  
A   OP1    O N N 74  
A   OP2    O N N 75  
A   "O5'"  O N N 76  
A   "C5'"  C N N 77  
A   "C4'"  C N R 78  
A   "O4'"  O N N 79  
A   "C3'"  C N S 80  
A   "O3'"  O N N 81  
A   "C2'"  C N R 82  
A   "O2'"  O N N 83  
A   "C1'"  C N R 84  
A   N9     N Y N 85  
A   C8     C Y N 86  
A   N7     N Y N 87  
A   C5     C Y N 88  
A   C6     C Y N 89  
A   N6     N N N 90  
A   N1     N Y N 91  
A   C2     C Y N 92  
A   N3     N Y N 93  
A   C4     C Y N 94  
A   HOP3   H N N 95  
A   HOP2   H N N 96  
A   "H5'"  H N N 97  
A   "H5''" H N N 98  
A   "H4'"  H N N 99  
A   "H3'"  H N N 100 
A   "HO3'" H N N 101 
A   "H2'"  H N N 102 
A   "HO2'" H N N 103 
A   "H1'"  H N N 104 
A   H8     H N N 105 
A   H61    H N N 106 
A   H62    H N N 107 
A   H2     H N N 108 
C   OP3    O N N 109 
C   P      P N N 110 
C   OP1    O N N 111 
C   OP2    O N N 112 
C   "O5'"  O N N 113 
C   "C5'"  C N N 114 
C   "C4'"  C N R 115 
C   "O4'"  O N N 116 
C   "C3'"  C N S 117 
C   "O3'"  O N N 118 
C   "C2'"  C N R 119 
C   "O2'"  O N N 120 
C   "C1'"  C N R 121 
C   N1     N N N 122 
C   C2     C N N 123 
C   O2     O N N 124 
C   N3     N N N 125 
C   C4     C N N 126 
C   N4     N N N 127 
C   C5     C N N 128 
C   C6     C N N 129 
C   HOP3   H N N 130 
C   HOP2   H N N 131 
C   "H5'"  H N N 132 
C   "H5''" H N N 133 
C   "H4'"  H N N 134 
C   "H3'"  H N N 135 
C   "HO3'" H N N 136 
C   "H2'"  H N N 137 
C   "HO2'" H N N 138 
C   "H1'"  H N N 139 
C   H41    H N N 140 
C   H42    H N N 141 
C   H5     H N N 142 
C   H6     H N N 143 
G   OP3    O N N 144 
G   P      P N N 145 
G   OP1    O N N 146 
G   OP2    O N N 147 
G   "O5'"  O N N 148 
G   "C5'"  C N N 149 
G   "C4'"  C N R 150 
G   "O4'"  O N N 151 
G   "C3'"  C N S 152 
G   "O3'"  O N N 153 
G   "C2'"  C N R 154 
G   "O2'"  O N N 155 
G   "C1'"  C N R 156 
G   N9     N Y N 157 
G   C8     C Y N 158 
G   N7     N Y N 159 
G   C5     C Y N 160 
G   C6     C N N 161 
G   O6     O N N 162 
G   N1     N N N 163 
G   C2     C N N 164 
G   N2     N N N 165 
G   N3     N N N 166 
G   C4     C Y N 167 
G   HOP3   H N N 168 
G   HOP2   H N N 169 
G   "H5'"  H N N 170 
G   "H5''" H N N 171 
G   "H4'"  H N N 172 
G   "H3'"  H N N 173 
G   "HO3'" H N N 174 
G   "H2'"  H N N 175 
G   "HO2'" H N N 176 
G   "H1'"  H N N 177 
G   H8     H N N 178 
G   H1     H N N 179 
G   H21    H N N 180 
G   H22    H N N 181 
H2U P      P N N 182 
H2U OP1    O N N 183 
H2U OP2    O N N 184 
H2U OP3    O N N 185 
H2U "O5'"  O N N 186 
H2U "C5'"  C N N 187 
H2U "C4'"  C N R 188 
H2U "O4'"  O N N 189 
H2U "C3'"  C N S 190 
H2U "O3'"  O N N 191 
H2U "C1'"  C N R 192 
H2U "C2'"  C N R 193 
H2U "O2'"  O N N 194 
H2U N1     N N N 195 
H2U C2     C N N 196 
H2U O2     O N N 197 
H2U N3     N N N 198 
H2U C4     C N N 199 
H2U O4     O N N 200 
H2U C5     C N N 201 
H2U C6     C N N 202 
H2U HOP2   H N N 203 
H2U HOP3   H N N 204 
H2U "H5'"  H N N 205 
H2U "H5''" H N N 206 
H2U "H4'"  H N N 207 
H2U "H3'"  H N N 208 
H2U "HO3'" H N N 209 
H2U "H1'"  H N N 210 
H2U "H2'"  H N N 211 
H2U "HO2'" H N N 212 
H2U HN3    H N N 213 
H2U H51    H N N 214 
H2U H52    H N N 215 
H2U H61    H N N 216 
H2U H62    H N N 217 
OMC N1     N N N 218 
OMC C2     C N N 219 
OMC N3     N N N 220 
OMC C4     C N N 221 
OMC C5     C N N 222 
OMC C6     C N N 223 
OMC O2     O N N 224 
OMC N4     N N N 225 
OMC "C1'"  C N R 226 
OMC "C2'"  C N R 227 
OMC "O2'"  O N N 228 
OMC CM2    C N N 229 
OMC "C3'"  C N R 230 
OMC "C4'"  C N R 231 
OMC "O4'"  O N N 232 
OMC "O3'"  O N N 233 
OMC "C5'"  C N N 234 
OMC "O5'"  O N N 235 
OMC P      P N N 236 
OMC OP1    O N N 237 
OMC OP2    O N N 238 
OMC OP3    O N N 239 
OMC H5     H N N 240 
OMC H6     H N N 241 
OMC HN41   H N N 242 
OMC HN42   H N N 243 
OMC "H1'"  H N N 244 
OMC "H2'"  H N N 245 
OMC HM21   H N N 246 
OMC HM22   H N N 247 
OMC HM23   H N N 248 
OMC "H3'"  H N N 249 
OMC "H4'"  H N N 250 
OMC "HO3'" H N N 251 
OMC "H5'"  H N N 252 
OMC "H5''" H N N 253 
OMC HOP2   H N N 254 
OMC HOP3   H N N 255 
PSU N1     N N N 256 
PSU C2     C N N 257 
PSU N3     N N N 258 
PSU C4     C N N 259 
PSU C5     C N N 260 
PSU C6     C N N 261 
PSU O2     O N N 262 
PSU O4     O N N 263 
PSU "C1'"  C N S 264 
PSU "C2'"  C N R 265 
PSU "O2'"  O N N 266 
PSU "C3'"  C N S 267 
PSU "C4'"  C N R 268 
PSU "O3'"  O N N 269 
PSU "O4'"  O N N 270 
PSU "C5'"  C N N 271 
PSU "O5'"  O N N 272 
PSU P      P N N 273 
PSU OP1    O N N 274 
PSU OP2    O N N 275 
PSU OP3    O N N 276 
PSU HN1    H N N 277 
PSU HN3    H N N 278 
PSU H6     H N N 279 
PSU "H1'"  H N N 280 
PSU "H2'"  H N N 281 
PSU "HO2'" H N N 282 
PSU "H3'"  H N N 283 
PSU "H4'"  H N N 284 
PSU "HO3'" H N N 285 
PSU "H5'"  H N N 286 
PSU "H5''" H N N 287 
PSU HOP2   H N N 288 
PSU HOP3   H N N 289 
U   OP3    O N N 290 
U   P      P N N 291 
U   OP1    O N N 292 
U   OP2    O N N 293 
U   "O5'"  O N N 294 
U   "C5'"  C N N 295 
U   "C4'"  C N R 296 
U   "O4'"  O N N 297 
U   "C3'"  C N S 298 
U   "O3'"  O N N 299 
U   "C2'"  C N R 300 
U   "O2'"  O N N 301 
U   "C1'"  C N R 302 
U   N1     N N N 303 
U   C2     C N N 304 
U   O2     O N N 305 
U   N3     N N N 306 
U   C4     C N N 307 
U   O4     O N N 308 
U   C5     C N N 309 
U   C6     C N N 310 
U   HOP3   H N N 311 
U   HOP2   H N N 312 
U   "H5'"  H N N 313 
U   "H5''" H N N 314 
U   "H4'"  H N N 315 
U   "H3'"  H N N 316 
U   "HO3'" H N N 317 
U   "H2'"  H N N 318 
U   "HO2'" H N N 319 
U   "H1'"  H N N 320 
U   H3     H N N 321 
U   H5     H N N 322 
U   H6     H N N 323 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4SU N1    C2     sing N N 1   
4SU N1    C6     sing N N 2   
4SU N1    "C1'"  sing N N 3   
4SU C2    N3     sing N N 4   
4SU C2    O2     doub N N 5   
4SU N3    C4     sing N N 6   
4SU N3    HN3    sing N N 7   
4SU C4    C5     sing N N 8   
4SU C4    S4     doub N N 9   
4SU C5    C6     doub N N 10  
4SU C5    H5     sing N N 11  
4SU C6    H6     sing N N 12  
4SU "C1'" "C2'"  sing N N 13  
4SU "C1'" "O4'"  sing N N 14  
4SU "C1'" "H1'"  sing N N 15  
4SU "C2'" "O2'"  sing N N 16  
4SU "C2'" "C3'"  sing N N 17  
4SU "C2'" "H2'"  sing N N 18  
4SU "O2'" "HO2'" sing N N 19  
4SU "C3'" "C4'"  sing N N 20  
4SU "C3'" "O3'"  sing N N 21  
4SU "C3'" "H3'"  sing N N 22  
4SU "C4'" "O4'"  sing N N 23  
4SU "C4'" "C5'"  sing N N 24  
4SU "C4'" "H4'"  sing N N 25  
4SU "O3'" "HO3'" sing N N 26  
4SU "C5'" "O5'"  sing N N 27  
4SU "C5'" "H5'"  sing N N 28  
4SU "C5'" "H5''" sing N N 29  
4SU "O5'" P      sing N N 30  
4SU P     OP1    doub N N 31  
4SU P     OP2    sing N N 32  
4SU P     OP3    sing N N 33  
4SU OP2   HOP2   sing N N 34  
4SU OP3   HOP3   sing N N 35  
5MU N1    C2     sing N N 36  
5MU N1    C6     sing N N 37  
5MU N1    "C1'"  sing N N 38  
5MU C2    N3     sing N N 39  
5MU C2    O2     doub N N 40  
5MU N3    C4     sing N N 41  
5MU N3    HN3    sing N N 42  
5MU C4    C5     sing N N 43  
5MU C4    O4     doub N N 44  
5MU C5    C5M    sing N N 45  
5MU C5    C6     doub N N 46  
5MU C5M   H71    sing N N 47  
5MU C5M   H72    sing N N 48  
5MU C5M   H73    sing N N 49  
5MU C6    H6     sing N N 50  
5MU "C1'" "C2'"  sing N N 51  
5MU "C1'" "O4'"  sing N N 52  
5MU "C1'" "H1'"  sing N N 53  
5MU "C2'" "O2'"  sing N N 54  
5MU "C2'" "C3'"  sing N N 55  
5MU "C2'" "H2'"  sing N N 56  
5MU "O2'" "HO2'" sing N N 57  
5MU "C3'" "C4'"  sing N N 58  
5MU "C3'" "O3'"  sing N N 59  
5MU "C3'" "H3'"  sing N N 60  
5MU "C4'" "O4'"  sing N N 61  
5MU "C4'" "C5'"  sing N N 62  
5MU "C4'" "H4'"  sing N N 63  
5MU "O3'" "HO3'" sing N N 64  
5MU "C5'" "O5'"  sing N N 65  
5MU "C5'" "H5'"  sing N N 66  
5MU "C5'" "H5''" sing N N 67  
5MU "O5'" P      sing N N 68  
5MU P     OP1    doub N N 69  
5MU P     OP2    sing N N 70  
5MU P     OP3    sing N N 71  
5MU OP2   HOP2   sing N N 72  
5MU OP3   HOP3   sing N N 73  
A   OP3   P      sing N N 74  
A   OP3   HOP3   sing N N 75  
A   P     OP1    doub N N 76  
A   P     OP2    sing N N 77  
A   P     "O5'"  sing N N 78  
A   OP2   HOP2   sing N N 79  
A   "O5'" "C5'"  sing N N 80  
A   "C5'" "C4'"  sing N N 81  
A   "C5'" "H5'"  sing N N 82  
A   "C5'" "H5''" sing N N 83  
A   "C4'" "O4'"  sing N N 84  
A   "C4'" "C3'"  sing N N 85  
A   "C4'" "H4'"  sing N N 86  
A   "O4'" "C1'"  sing N N 87  
A   "C3'" "O3'"  sing N N 88  
A   "C3'" "C2'"  sing N N 89  
A   "C3'" "H3'"  sing N N 90  
A   "O3'" "HO3'" sing N N 91  
A   "C2'" "O2'"  sing N N 92  
A   "C2'" "C1'"  sing N N 93  
A   "C2'" "H2'"  sing N N 94  
A   "O2'" "HO2'" sing N N 95  
A   "C1'" N9     sing N N 96  
A   "C1'" "H1'"  sing N N 97  
A   N9    C8     sing Y N 98  
A   N9    C4     sing Y N 99  
A   C8    N7     doub Y N 100 
A   C8    H8     sing N N 101 
A   N7    C5     sing Y N 102 
A   C5    C6     sing Y N 103 
A   C5    C4     doub Y N 104 
A   C6    N6     sing N N 105 
A   C6    N1     doub Y N 106 
A   N6    H61    sing N N 107 
A   N6    H62    sing N N 108 
A   N1    C2     sing Y N 109 
A   C2    N3     doub Y N 110 
A   C2    H2     sing N N 111 
A   N3    C4     sing Y N 112 
C   OP3   P      sing N N 113 
C   OP3   HOP3   sing N N 114 
C   P     OP1    doub N N 115 
C   P     OP2    sing N N 116 
C   P     "O5'"  sing N N 117 
C   OP2   HOP2   sing N N 118 
C   "O5'" "C5'"  sing N N 119 
C   "C5'" "C4'"  sing N N 120 
C   "C5'" "H5'"  sing N N 121 
C   "C5'" "H5''" sing N N 122 
C   "C4'" "O4'"  sing N N 123 
C   "C4'" "C3'"  sing N N 124 
C   "C4'" "H4'"  sing N N 125 
C   "O4'" "C1'"  sing N N 126 
C   "C3'" "O3'"  sing N N 127 
C   "C3'" "C2'"  sing N N 128 
C   "C3'" "H3'"  sing N N 129 
C   "O3'" "HO3'" sing N N 130 
C   "C2'" "O2'"  sing N N 131 
C   "C2'" "C1'"  sing N N 132 
C   "C2'" "H2'"  sing N N 133 
C   "O2'" "HO2'" sing N N 134 
C   "C1'" N1     sing N N 135 
C   "C1'" "H1'"  sing N N 136 
C   N1    C2     sing N N 137 
C   N1    C6     sing N N 138 
C   C2    O2     doub N N 139 
C   C2    N3     sing N N 140 
C   N3    C4     doub N N 141 
C   C4    N4     sing N N 142 
C   C4    C5     sing N N 143 
C   N4    H41    sing N N 144 
C   N4    H42    sing N N 145 
C   C5    C6     doub N N 146 
C   C5    H5     sing N N 147 
C   C6    H6     sing N N 148 
G   OP3   P      sing N N 149 
G   OP3   HOP3   sing N N 150 
G   P     OP1    doub N N 151 
G   P     OP2    sing N N 152 
G   P     "O5'"  sing N N 153 
G   OP2   HOP2   sing N N 154 
G   "O5'" "C5'"  sing N N 155 
G   "C5'" "C4'"  sing N N 156 
G   "C5'" "H5'"  sing N N 157 
G   "C5'" "H5''" sing N N 158 
G   "C4'" "O4'"  sing N N 159 
G   "C4'" "C3'"  sing N N 160 
G   "C4'" "H4'"  sing N N 161 
G   "O4'" "C1'"  sing N N 162 
G   "C3'" "O3'"  sing N N 163 
G   "C3'" "C2'"  sing N N 164 
G   "C3'" "H3'"  sing N N 165 
G   "O3'" "HO3'" sing N N 166 
G   "C2'" "O2'"  sing N N 167 
G   "C2'" "C1'"  sing N N 168 
G   "C2'" "H2'"  sing N N 169 
G   "O2'" "HO2'" sing N N 170 
G   "C1'" N9     sing N N 171 
G   "C1'" "H1'"  sing N N 172 
G   N9    C8     sing Y N 173 
G   N9    C4     sing Y N 174 
G   C8    N7     doub Y N 175 
G   C8    H8     sing N N 176 
G   N7    C5     sing Y N 177 
G   C5    C6     sing N N 178 
G   C5    C4     doub Y N 179 
G   C6    O6     doub N N 180 
G   C6    N1     sing N N 181 
G   N1    C2     sing N N 182 
G   N1    H1     sing N N 183 
G   C2    N2     sing N N 184 
G   C2    N3     doub N N 185 
G   N2    H21    sing N N 186 
G   N2    H22    sing N N 187 
G   N3    C4     sing N N 188 
H2U P     OP1    doub N N 189 
H2U P     OP2    sing N N 190 
H2U P     OP3    sing N N 191 
H2U P     "O5'"  sing N N 192 
H2U OP2   HOP2   sing N N 193 
H2U OP3   HOP3   sing N N 194 
H2U "O5'" "C5'"  sing N N 195 
H2U "C5'" "C4'"  sing N N 196 
H2U "C5'" "H5'"  sing N N 197 
H2U "C5'" "H5''" sing N N 198 
H2U "C4'" "O4'"  sing N N 199 
H2U "C4'" "C3'"  sing N N 200 
H2U "C4'" "H4'"  sing N N 201 
H2U "O4'" "C1'"  sing N N 202 
H2U "C3'" "O3'"  sing N N 203 
H2U "C3'" "C2'"  sing N N 204 
H2U "C3'" "H3'"  sing N N 205 
H2U "O3'" "HO3'" sing N N 206 
H2U "C1'" "C2'"  sing N N 207 
H2U "C1'" N1     sing N N 208 
H2U "C1'" "H1'"  sing N N 209 
H2U "C2'" "O2'"  sing N N 210 
H2U "C2'" "H2'"  sing N N 211 
H2U "O2'" "HO2'" sing N N 212 
H2U N1    C2     sing N N 213 
H2U N1    C6     sing N N 214 
H2U C2    O2     doub N N 215 
H2U C2    N3     sing N N 216 
H2U N3    C4     sing N N 217 
H2U N3    HN3    sing N N 218 
H2U C4    O4     doub N N 219 
H2U C4    C5     sing N N 220 
H2U C5    C6     sing N N 221 
H2U C5    H51    sing N N 222 
H2U C5    H52    sing N N 223 
H2U C6    H61    sing N N 224 
H2U C6    H62    sing N N 225 
OMC N1    C2     sing N N 226 
OMC N1    C6     sing N N 227 
OMC N1    "C1'"  sing N N 228 
OMC C2    N3     sing N N 229 
OMC C2    O2     doub N N 230 
OMC N3    C4     doub N N 231 
OMC C4    C5     sing N N 232 
OMC C4    N4     sing N N 233 
OMC C5    C6     doub N N 234 
OMC C5    H5     sing N N 235 
OMC C6    H6     sing N N 236 
OMC N4    HN41   sing N N 237 
OMC N4    HN42   sing N N 238 
OMC "C1'" "C2'"  sing N N 239 
OMC "C1'" "O4'"  sing N N 240 
OMC "C1'" "H1'"  sing N N 241 
OMC "C2'" "O2'"  sing N N 242 
OMC "C2'" "C3'"  sing N N 243 
OMC "C2'" "H2'"  sing N N 244 
OMC "O2'" CM2    sing N N 245 
OMC CM2   HM21   sing N N 246 
OMC CM2   HM22   sing N N 247 
OMC CM2   HM23   sing N N 248 
OMC "C3'" "C4'"  sing N N 249 
OMC "C3'" "O3'"  sing N N 250 
OMC "C3'" "H3'"  sing N N 251 
OMC "C4'" "O4'"  sing N N 252 
OMC "C4'" "C5'"  sing N N 253 
OMC "C4'" "H4'"  sing N N 254 
OMC "O3'" "HO3'" sing N N 255 
OMC "C5'" "O5'"  sing N N 256 
OMC "C5'" "H5'"  sing N N 257 
OMC "C5'" "H5''" sing N N 258 
OMC "O5'" P      sing N N 259 
OMC P     OP1    doub N N 260 
OMC P     OP2    sing N N 261 
OMC P     OP3    sing N N 262 
OMC OP2   HOP2   sing N N 263 
OMC OP3   HOP3   sing N N 264 
PSU N1    C2     sing N N 265 
PSU N1    C6     sing N N 266 
PSU N1    HN1    sing N N 267 
PSU C2    N3     sing N N 268 
PSU C2    O2     doub N N 269 
PSU N3    C4     sing N N 270 
PSU N3    HN3    sing N N 271 
PSU C4    C5     sing N N 272 
PSU C4    O4     doub N N 273 
PSU C5    C6     doub N N 274 
PSU C5    "C1'"  sing N N 275 
PSU C6    H6     sing N N 276 
PSU "C1'" "C2'"  sing N N 277 
PSU "C1'" "O4'"  sing N N 278 
PSU "C1'" "H1'"  sing N N 279 
PSU "C2'" "O2'"  sing N N 280 
PSU "C2'" "C3'"  sing N N 281 
PSU "C2'" "H2'"  sing N N 282 
PSU "O2'" "HO2'" sing N N 283 
PSU "C3'" "C4'"  sing N N 284 
PSU "C3'" "O3'"  sing N N 285 
PSU "C3'" "H3'"  sing N N 286 
PSU "C4'" "O4'"  sing N N 287 
PSU "C4'" "C5'"  sing N N 288 
PSU "C4'" "H4'"  sing N N 289 
PSU "O3'" "HO3'" sing N N 290 
PSU "C5'" "O5'"  sing N N 291 
PSU "C5'" "H5'"  sing N N 292 
PSU "C5'" "H5''" sing N N 293 
PSU "O5'" P      sing N N 294 
PSU P     OP1    doub N N 295 
PSU P     OP2    sing N N 296 
PSU P     OP3    sing N N 297 
PSU OP2   HOP2   sing N N 298 
PSU OP3   HOP3   sing N N 299 
U   OP3   P      sing N N 300 
U   OP3   HOP3   sing N N 301 
U   P     OP1    doub N N 302 
U   P     OP2    sing N N 303 
U   P     "O5'"  sing N N 304 
U   OP2   HOP2   sing N N 305 
U   "O5'" "C5'"  sing N N 306 
U   "C5'" "C4'"  sing N N 307 
U   "C5'" "H5'"  sing N N 308 
U   "C5'" "H5''" sing N N 309 
U   "C4'" "O4'"  sing N N 310 
U   "C4'" "C3'"  sing N N 311 
U   "C4'" "H4'"  sing N N 312 
U   "O4'" "C1'"  sing N N 313 
U   "C3'" "O3'"  sing N N 314 
U   "C3'" "C2'"  sing N N 315 
U   "C3'" "H3'"  sing N N 316 
U   "O3'" "HO3'" sing N N 317 
U   "C2'" "O2'"  sing N N 318 
U   "C2'" "C1'"  sing N N 319 
U   "C2'" "H2'"  sing N N 320 
U   "O2'" "HO2'" sing N N 321 
U   "C1'" N1     sing N N 322 
U   "C1'" "H1'"  sing N N 323 
U   N1    C2     sing N N 324 
U   N1    C6     sing N N 325 
U   C2    O2     doub N N 326 
U   C2    N3     sing N N 327 
U   N3    C4     sing N N 328 
U   N3    H3     sing N N 329 
U   C4    O4     doub N N 330 
U   C4    C5     sing N N 331 
U   C5    C6     doub N N 332 
U   C5    H5     sing N N 333 
U   C6    H6     sing N N 334 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
3CW5 'double helix'         
3CW5 'a-form double helix'  
3CW5 'parallel strands'     
3CW5 'hairpin loop'         
3CW5 'mismatched base pair' 
3CW5 'four-way junction'    
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A G   2  1_555 A C   72 1_555 -0.484 -0.473 -0.234 -10.480 -12.640 -0.452   1  A_G2:C71_A    A 2  ? A 71 ? 19 1 
1 A C   3  1_555 A G   71 1_555 -0.122 -0.430 0.663  -8.534  -3.878  -3.109   2  A_C3:G70_A    A 3  ? A 70 ? 19 1 
1 A G   4  1_555 A C   70 1_555 -0.582 -0.289 0.167  8.281   2.732   -0.154   3  A_G4:C69_A    A 4  ? A 69 ? 19 1 
1 A G   5  1_555 A C   69 1_555 -0.642 -0.504 -0.425 -8.099  -8.956  2.793    4  A_G5:C68_A    A 5  ? A 68 ? 19 1 
1 A G   6  1_555 A C   68 1_555 -0.842 -0.372 -0.005 -8.493  -7.059  0.813    5  A_G6:C67_A    A 6  ? A 67 ? 19 1 
1 A G   7  1_555 A C   67 1_555 -0.801 -0.435 -0.001 -1.284  1.616   -1.487   6  A_G7:C66_A    A 7  ? A 66 ? 19 1 
1 A G   50 1_555 A C   66 1_555 0.298  -0.107 0.042  -1.610  -0.629  -1.904   7  A_G49:C65_A   A 49 ? A 65 ? 19 1 
1 A U   51 1_555 A G   65 1_555 1.930  -0.811 -0.109 1.632   -4.269  -4.212   8  A_U50:G64_A   A 50 ? A 64 ? 28 1 
1 A C   52 1_555 A G   64 1_555 0.693  -0.534 -0.074 3.410   -11.201 1.047    9  A_C51:G63_A   A 51 ? A 63 ? 19 1 
1 A G   53 1_555 A C   63 1_555 0.089  -0.163 0.007  -1.224  -1.630  1.571    10 A_G52:C62_A   A 52 ? A 62 ? 19 1 
1 A G   54 1_555 A C   62 1_555 -0.371 -0.158 -0.364 -17.200 -0.342  3.571    11 A_G53:C61_A   A 53 ? A 61 ? 19 1 
1 A 5MU 55 1_555 A A   59 1_555 3.986  -1.817 0.855  -4.017  14.609  -102.600 12 A_5MU54:A58_A A 54 ? A 58 ? 24 4 
1 A PSU 56 1_555 A G   19 1_555 0.301  -5.214 0.342  21.412  22.308  -98.785  13 A_PSU55:G18_A A 55 ? A 18 ? ?  2 
1 A A   39 1_555 A OMC 33 1_555 -3.134 -0.784 0.739  18.444  4.447   0.753    14 A_A38:OMC32_A A 38 ? A 32 ? ?  1 
1 A C   40 1_555 A G   32 1_555 0.150  -0.004 0.085  26.510  -15.753 5.613    15 A_C39:G31_A   A 39 ? A 31 ? 19 1 
1 A C   41 1_555 A G   31 1_555 -0.386 -0.362 -0.903 19.033  -13.333 -0.571   16 A_C40:G30_A   A 40 ? A 30 ? 19 1 
1 A C   42 1_555 A G   30 1_555 0.267  -0.303 -0.378 2.832   -2.298  -2.937   17 A_C41:G29_A   A 41 ? A 29 ? 19 1 
1 A G   43 1_555 A C   29 1_555 -0.853 -0.161 0.528  -4.793  -12.528 7.710    18 A_G42:C28_A   A 42 ? A 28 ? 19 1 
1 A A   44 1_555 A U   28 1_555 -0.593 -0.312 -0.207 -17.926 -18.974 -3.109   19 A_A43:U27_A   A 43 ? A 27 ? 20 1 
1 A A   45 1_555 A G   27 1_555 0.410  1.580  0.201  -24.268 -11.645 -9.378   20 A_A44:G26_A   A 44 ? A 26 ? 8  ? 
1 A G   10 1_555 A C   26 1_555 -0.384 -0.434 -0.595 0.432   -2.833  0.590    21 A_G10:C25_A   A 10 ? A 25 ? 19 1 
1 A A   11 1_555 A U   25 1_555 0.369  -0.276 0.145  -3.423  11.169  2.234    22 A_A11:U24_A   A 11 ? A 24 ? 20 1 
1 A G   12 1_555 A C   24 1_555 0.002  -0.053 -0.607 -17.633 -19.406 5.989    23 A_G12:C23_A   A 12 ? A 23 ? 19 1 
1 A C   13 1_555 A G   23 1_555 0.095  -0.132 -0.243 -5.200  -13.065 1.224    24 A_C13:G22_A   A 13 ? A 22 ? 19 1 
1 A A   14 1_555 A 4SU 8  1_555 -4.056 -2.246 1.153  8.646   25.282  -96.321  25 A_A14:4SU8_A  A 14 ? A 8  ? 24 4 
1 A G   15 1_555 A C   49 1_555 0.324  3.547  -0.079 -13.428 -2.542  158.256  26 A_G15:C48_A   A 15 ? A 48 ? 22 2 
1 A G   20 1_555 A C   57 1_555 0.302  -0.507 0.112  -13.452 -11.513 -7.841   27 A_G19:C56_A   A 19 ? A 56 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A G   2  1_555 A C   72 1_555 A C   3  1_555 A G   71 1_555 -0.665 -2.295 3.179 -6.134 -1.276 31.407  -3.931 0.092  3.333 -2.328 
11.191  32.010  1  AA_G2C3:G70C71_AA       A 2  ? A 71 ? A 3  ? A 70 ? 
1 A C   3  1_555 A G   71 1_555 A G   4  1_555 A C   70 1_555 1.014  -2.887 2.696 3.629  -4.961 18.977  -6.093 -1.287 3.462 
-14.559 -10.650 19.939  2  AA_C3G4:C69G70_AA       A 3  ? A 70 ? A 4  ? A 69 ? 
1 A G   4  1_555 A C   70 1_555 A G   5  1_555 A C   69 1_555 0.294  -2.441 3.643 3.536  6.412  28.745  -6.178 0.201  3.052 12.658 
-6.981  29.645  3  AA_G4G5:C68C69_AA       A 4  ? A 69 ? A 5  ? A 68 ? 
1 A G   5  1_555 A C   69 1_555 A G   6  1_555 A C   68 1_555 0.138  -2.149 3.085 -3.111 6.430  30.056  -5.128 -0.787 2.555 12.183 
5.895   30.874  4  AA_G5G6:C67C68_AA       A 5  ? A 68 ? A 6  ? A 67 ? 
1 A G   6  1_555 A C   68 1_555 A G   7  1_555 A C   67 1_555 0.230  -2.124 3.035 2.206  5.187  28.604  -5.211 -0.036 2.627 10.372 
-4.412  29.143  5  AA_G6G7:C66C67_AA       A 6  ? A 67 ? A 7  ? A 66 ? 
1 A G   7  1_555 A C   67 1_555 A G   50 1_555 A C   66 1_555 -0.053 -2.070 3.280 1.638  1.320  39.496  -3.213 0.270  3.207 1.951 
-2.422  39.549  6  AA_G7G49:C65C66_AA      A 7  ? A 66 ? A 49 ? A 65 ? 
1 A G   50 1_555 A C   66 1_555 A U   51 1_555 A G   65 1_555 -0.795 -2.132 3.227 0.568  -2.877 37.563  -2.926 1.306  3.364 -4.459 
-0.881  37.674  7  AA_G49U50:G64C65_AA     A 49 ? A 65 ? A 50 ? A 64 ? 
1 A U   51 1_555 A G   65 1_555 A C   52 1_555 A G   64 1_555 0.298  -1.631 3.015 5.483  6.588  29.963  -4.143 0.365  2.618 12.425 
-10.341 31.138  8  AA_U50C51:G63G64_AA     A 50 ? A 64 ? A 51 ? A 63 ? 
1 A C   52 1_555 A G   64 1_555 A G   53 1_555 A C   63 1_555 0.653  -2.251 3.224 0.080  6.462  22.197  -7.624 -1.606 2.479 16.344 
-0.201  23.108  9  AA_C51G52:C62G63_AA     A 51 ? A 63 ? A 52 ? A 62 ? 
1 A G   53 1_555 A C   63 1_555 A G   54 1_555 A C   62 1_555 0.899  -2.559 3.495 6.030  7.612  31.009  -5.920 -0.546 2.921 13.818 
-10.947 32.458  10 AA_G52G53:C61C62_AA     A 52 ? A 62 ? A 53 ? A 61 ? 
1 A G   54 1_555 A C   62 1_555 A 5MU 55 1_555 A A   59 1_555 -2.462 -2.247 3.086 -0.644 2.089  88.574  -1.650 1.750  3.058 1.495 
0.461   88.595  11 AA_G535MU54:A58C61_AA   A 53 ? A 61 ? A 54 ? A 58 ? 
1 A 5MU 55 1_555 A A   59 1_555 A PSU 56 1_555 A G   19 1_555 1.866  -2.177 3.514 7.463  -0.665 41.173  -2.971 -1.731 3.814 -0.936 
-10.507 41.820  12 AA_5MU54PSU55:G18A58_AA A 54 ? A 58 ? A 55 ? A 18 ? 
1 A A   39 1_555 A OMC 33 1_555 A C   40 1_555 A G   32 1_555 0.101  -1.251 3.295 3.381  -6.053 46.404  -1.055 0.162  3.422 -7.631 
-4.262  46.891  13 AA_A38C39:G31OMC32_AA   A 38 ? A 32 ? A 39 ? A 31 ? 
1 A C   40 1_555 A G   32 1_555 A C   41 1_555 A G   31 1_555 -0.353 -1.934 3.298 4.476  8.273  29.915  -5.024 1.434  2.605 15.549 
-8.414  31.326  14 AA_C39C40:G30G31_AA     A 39 ? A 31 ? A 40 ? A 30 ? 
1 A C   41 1_555 A G   31 1_555 A C   42 1_555 A G   30 1_555 -0.595 -1.710 3.809 -4.013 9.529  32.636  -4.571 0.311  3.245 16.450 
6.927   34.192  15 AA_C40C41:G29G30_AA     A 40 ? A 30 ? A 41 ? A 29 ? 
1 A C   42 1_555 A G   30 1_555 A G   43 1_555 A C   29 1_555 1.234  -2.015 3.165 -1.725 8.229  25.499  -6.172 -3.043 2.325 18.030 
3.780   26.828  16 AA_C41G42:C28G29_AA     A 41 ? A 29 ? A 42 ? A 28 ? 
1 A G   43 1_555 A C   29 1_555 A A   44 1_555 A U   28 1_555 -0.006 -1.870 3.501 9.102  6.736  35.055  -3.899 1.274  3.009 10.839 
-14.646 36.784  17 AA_G42A43:U27C28_AA     A 42 ? A 28 ? A 43 ? A 27 ? 
1 A A   44 1_555 A U   28 1_555 A A   45 1_555 A G   27 1_555 -0.346 -1.614 3.129 0.204  7.817  40.840  -3.031 0.507  2.786 11.080 
-0.289  41.551  18 AA_A43A44:G26U27_AA     A 43 ? A 27 ? A 44 ? A 26 ? 
1 A A   45 1_555 A G   27 1_555 A G   10 1_555 A C   26 1_555 -3.062 -2.643 3.072 19.116 5.220  53.210  -3.014 4.049  1.720 5.613 
-20.554 56.527  19 AA_A44G10:C25G26_AA     A 44 ? A 26 ? A 10 ? A 25 ? 
1 A G   10 1_555 A C   26 1_555 A A   11 1_555 A U   25 1_555 -0.955 -1.846 3.228 -9.240 0.884  36.119  -3.008 0.248  3.320 1.397 
14.607  37.254  20 AA_G10A11:U24C25_AA     A 10 ? A 25 ? A 11 ? A 24 ? 
1 A A   11 1_555 A U   25 1_555 A G   12 1_555 A C   24 1_555 0.584  -1.896 3.657 11.328 11.871 29.402  -5.322 0.936  2.750 21.417 
-20.436 33.582  21 AA_A11G12:C23U24_AA     A 11 ? A 24 ? A 12 ? A 23 ? 
1 A G   12 1_555 A C   24 1_555 A C   13 1_555 A G   23 1_555 0.761  -1.982 2.849 5.201  1.080  27.547  -4.315 -0.490 2.863 2.242 
-10.795 28.045  22 AA_G12C13:G22C23_AA     A 12 ? A 23 ? A 13 ? A 22 ? 
1 A C   13 1_555 A G   23 1_555 A A   14 1_555 A 4SU 8  1_555 -1.129 -0.282 3.021 -1.970 -3.399 67.385  -0.132 0.946  3.059 -3.061 
1.774   67.486  23 AA_C13A14:4SU8G22_AA    A 13 ? A 22 ? A 14 ? A 8  ? 
1 A A   14 1_555 A 4SU 8  1_555 A G   15 1_555 A C   49 1_555 1.835  -3.310 3.310 5.647  12.199 -65.409 2.493  1.911  3.657 
-11.166 5.168   -66.626 24 AA_A14G15:C484SU8_AA    A 14 ? A 8  ? A 15 ? A 48 ? 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   2FMT 
_pdbx_initial_refinement_model.details          'E. coli tRNAfMet from 2FMT' 
#