HEADER UNKNOWN FUNCTION 23-APR-08 3CWY TITLE STRUCTURE OF CAGD FROM H. PYLORI PATHOGENICITY ISLAND CRYSTALLIZED IN TITLE 2 THE PRESENCE OF CU(II) IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CAGD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CAGD; COMPND 5 SYNONYM: HP0525, CAG24; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 STRAIN: CCUG 17874; SOURCE 5 GENE: CAGD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B-CAGD KEYWDS CAGD, CAG-PATHOGENICITY ISLAND, TYPE IV SECRETION SYSTEM, T4SS, KEYWDS 2 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR L.CENDRON,G.ZANOTTI,A.ANGELINI,N.BARISON,M.COUTURIER,M.STEIN REVDAT 6 15-NOV-23 3CWY 1 REMARK REVDAT 5 30-AUG-23 3CWY 1 REMARK REVDAT 4 20-OCT-21 3CWY 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 3CWY 1 AUTHOR REVDAT 2 17-FEB-09 3CWY 1 JRNL REVDAT 1 30-DEC-08 3CWY 0 JRNL AUTH L.CENDRON,M.COUTURIER,A.ANGELINI,N.BARISON,M.STEIN,G.ZANOTTI JRNL TITL THE HELICOBACTER PYLORI CAGD (HP0545, CAG24) PROTEIN IS JRNL TITL 2 ESSENTIAL FOR CAGA TRANSLOCATION AND MAXIMAL INDUCTION OF JRNL TITL 3 INTERLEUKIN-8 SECRETION. JRNL REF J.MOL.BIOL. V. 386 204 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19109970 JRNL DOI 10.1016/J.JMB.2008.12.018 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.CENDRON,A.SEYDEL,A.ANGELINI,R.BATTISTUTTA,G.ZANOTTI REMARK 1 TITL CRYSTAL STRUCTURE OF CAGZ, A PROTEIN FROM THE HELICOBACTER REMARK 1 TITL 2 PYLORI PATHOGENICITY ISLAND THAT ENCODES FOR A TYPE IV REMARK 1 TITL 3 SECRETION SYSTEM REMARK 1 REF J.MOL.BIOL. V. 340 881 2004 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.CENDRON,E.TASCA,T.SERAGLIO,A.SEYDEL,A.ANGELINI, REMARK 1 AUTH 2 R.BATTISTUTTA,C.MONTECUCCO,G.ZANOTTI REMARK 1 TITL THE CRYSTAL STRUCTURE OF CAGS FROM THE HELICOBACTER PYLORI REMARK 1 TITL 2 PATHOGENICITY ISLAND REMARK 1 REF PROTEINS: V. 69 440 2007 REMARK 1 REF 2 STRUCT.,FUNCT.,GENET. REMARK 1 REFN ISSN 0887-3585 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1913839.910 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 5322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 252 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.019 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 391 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 18 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.046 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1075 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.09000 REMARK 3 B22 (A**2) : 4.09000 REMARK 3 B33 (A**2) : -6.14000 REMARK 3 B12 (A**2) : 2.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.38 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.590 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.478 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.531 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.255 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.837 ; 3.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.71 REMARK 3 BSOL : 102.9 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97621 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5757 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 78.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 3CWX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M HEPES PH 7, 20% PEG REMARK 280 6000, CUCL2 0.02M , VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.10667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.05333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 104.10667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.05333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 104.10667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 52.05333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 104.10667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.05333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 ASP A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLU A 9 REMARK 465 ALA A 10 REMARK 465 GLN A 11 REMARK 465 GLU A 12 REMARK 465 LYS A 13 REMARK 465 GLU A 14 REMARK 465 LYS A 15 REMARK 465 ASN A 16 REMARK 465 THR A 17 REMARK 465 PRO A 18 REMARK 465 ASN A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 VAL A 22 REMARK 465 TYR A 23 REMARK 465 THR A 24 REMARK 465 ASN A 25 REMARK 465 LEU A 26 REMARK 465 ASP A 27 REMARK 465 PHE A 28 REMARK 465 ASP A 29 REMARK 465 SER A 30 REMARK 465 PHE A 31 REMARK 465 LYS A 32 REMARK 465 ALA A 33 REMARK 465 THR A 34 REMARK 465 ILE A 35 REMARK 465 LYS A 36 REMARK 465 ASN A 37 REMARK 465 LEU A 38 REMARK 465 LYS A 39 REMARK 465 ASP A 40 REMARK 465 LYS A 41 REMARK 465 LYS A 42 REMARK 465 VAL A 43 REMARK 465 THR A 44 REMARK 465 PHE A 45 REMARK 465 LYS A 46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 75 O HOH A 303 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SG CYS A 172 SG CYS A 172 11555 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 87 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 50 -145.82 -44.89 REMARK 500 ASP A 51 -32.44 -167.12 REMARK 500 LYS A 54 26.97 -60.61 REMARK 500 ASP A 55 -117.95 -135.21 REMARK 500 ASP A 59 51.17 -91.72 REMARK 500 VAL A 66 -60.92 -120.89 REMARK 500 PHE A 84 169.55 152.63 REMARK 500 ASP A 85 86.58 65.13 REMARK 500 GLU A 86 16.33 -170.83 REMARK 500 LYS A 87 -23.15 99.17 REMARK 500 LYS A 89 89.75 -166.96 REMARK 500 GLU A 90 96.20 71.22 REMARK 500 MSE A 91 -54.92 -145.14 REMARK 500 THR A 115 -69.27 -8.37 REMARK 500 ASP A 149 110.06 178.41 REMARK 500 TYR A 168 -11.04 -46.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CWX RELATED DB: PDB DBREF 3CWY A 1 176 UNP P94837 P94837_HELPY 33 208 SEQADV 3CWY MSE A 79 UNP P94837 VAL 111 ENGINEERED MUTATION SEQADV 3CWY ILE A 97 UNP P94837 LEU 129 ENGINEERED MUTATION SEQADV 3CWY ASN A 135 UNP P94837 ASP 167 ENGINEERED MUTATION SEQADV 3CWY MSE A 140 UNP P94837 VAL 172 ENGINEERED MUTATION SEQRES 1 A 176 ASN ASP ASP LYS GLU ALA LYS LYS GLU ALA GLN GLU LYS SEQRES 2 A 176 GLU LYS ASN THR PRO ASN GLY LEU VAL TYR THR ASN LEU SEQRES 3 A 176 ASP PHE ASP SER PHE LYS ALA THR ILE LYS ASN LEU LYS SEQRES 4 A 176 ASP LYS LYS VAL THR PHE LYS GLU VAL ASN PRO ASP ILE SEQRES 5 A 176 ILE LYS ASP GLU VAL PHE ASP PHE VAL ILE VAL ASN ARG SEQRES 6 A 176 VAL LEU LYS LYS ILE LYS ASP LEU LYS HIS TYR ASP PRO SEQRES 7 A 176 MSE ILE GLU LYS ILE PHE ASP GLU LYS GLY LYS GLU MSE SEQRES 8 A 176 GLY LEU ASN VAL GLU ILE GLN ILE ASN PRO GLU VAL LYS SEQRES 9 A 176 ASP PHE PHE THR PHE LYS SER ILE SER THR THR ASN LYS SEQRES 10 A 176 GLN ARG CYS PHE LEU SER LEU ARG GLY GLU THR ARG GLU SEQRES 11 A 176 ILE LEU CYS ASP ASN LYS LEU TYR ASN MSE LEU LEU ALA SEQRES 12 A 176 VAL PHE ASN SER TYR ASP PRO ASN ASP LEU LEU LYS HIS SEQRES 13 A 176 ILE SER THR VAL GLU SER LEU LYS LYS ILE PHE TYR THR SEQRES 14 A 176 ILE THR CYS GLU ALA VAL TYR MODRES 3CWY MSE A 79 MET SELENOMETHIONINE MODRES 3CWY MSE A 91 MET SELENOMETHIONINE MODRES 3CWY MSE A 140 MET SELENOMETHIONINE HET MSE A 79 8 HET MSE A 91 8 HET MSE A 140 8 HET CU A 201 1 HETNAM MSE SELENOMETHIONINE HETNAM CU COPPER (II) ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 CU CU 2+ FORMUL 3 HOH *11(H2 O) HELIX 1 1 PHE A 60 VAL A 66 1 7 HELIX 2 2 LEU A 67 ILE A 70 5 4 HELIX 3 3 ASP A 72 ASP A 77 5 6 HELIX 4 4 ASP A 134 ASN A 146 1 13 HELIX 5 5 SER A 147 TYR A 148 5 2 HELIX 6 6 ASP A 149 ASN A 151 5 3 HELIX 7 7 ASP A 152 THR A 169 1 18 SHEET 1 A 5 MSE A 79 ILE A 83 0 SHEET 2 A 5 GLY A 92 GLN A 98 -1 O GLY A 92 N ILE A 83 SHEET 3 A 5 PHE A 107 SER A 113 -1 O PHE A 109 N ILE A 97 SHEET 4 A 5 GLN A 118 LEU A 124 -1 O ARG A 119 N ILE A 112 SHEET 5 A 5 GLU A 127 ILE A 131 -1 O ILE A 131 N CYS A 120 SSBOND 1 CYS A 120 CYS A 133 1555 1555 2.09 LINK C PRO A 78 N MSE A 79 1555 1555 1.32 LINK C MSE A 79 N ILE A 80 1555 1555 1.32 LINK C GLU A 90 N MSE A 91 1555 1555 1.33 LINK C MSE A 91 N GLY A 92 1555 1555 1.32 LINK C ASN A 139 N MSE A 140 1555 1555 1.32 LINK C MSE A 140 N LEU A 141 1555 1555 1.32 LINK NE2 HIS A 156 CU CU A 201 1555 1555 2.13 SITE 1 AC1 2 HIS A 156 HOH A 303 CRYST1 65.030 65.030 156.160 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015378 0.008878 0.000000 0.00000 SCALE2 0.000000 0.017756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006404 0.00000