HEADER TRANSPORT PROTEIN 23-APR-08 3CWZ TITLE STRUCTURE OF RAB6(GTP)-R6IP1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-6A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 8-195; COMPND 5 SYNONYM: RAB-6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RAB6-INTERACTING PROTEIN 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 707-1145; COMPND 12 SYNONYM: RAB6IP1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: MAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAB6A, RAB6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: RAB6IP1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PHIS2; SOURCE 21 OTHER_DETAILS: VECTOR PHIS2 DERIVED FROM PET15 MODIFIED TO RTEV SOURCE 22 CLEAVAGE SITE KEYWDS RAB6 INTERACTING PROTEIN 1, RAB SMALL GTPASE, RAB-BINDING DOMAIN, KEYWDS 2 GUANOSINE 5' TRIPHOSPHATE, RUN, RPIP8, UNC-14, NESCA PLAT, GOLGI KEYWDS 3 APPARATUS, GOLGI, LIPASE, LIPOXYGENASE, MEMBRANE, LIPOPROTEIN, ER- KEYWDS 4 GOLGI TRANSPORT, GTP-BINDING, METHYLATION, NUCLEOTIDE-BINDING, KEYWDS 5 PHOSPHOPROTEIN, PRENYLATION, PROTEIN TRANSPORT, TRANSPORT, TRANSPORT KEYWDS 6 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.RECACHA,A.HOUDUSSE,B.GOUD,A.R.KHAN REVDAT 7 21-FEB-24 3CWZ 1 REMARK REVDAT 6 20-OCT-21 3CWZ 1 REMARK SEQADV LINK REVDAT 5 14-DEC-16 3CWZ 1 TITLE VERSN REVDAT 4 09-JUN-09 3CWZ 1 REVDAT REVDAT 3 03-MAR-09 3CWZ 1 JRNL REVDAT 2 24-FEB-09 3CWZ 1 VERSN REVDAT 1 18-NOV-08 3CWZ 0 JRNL AUTH R.RECACHA,A.BOULET,F.JOLLIVET,S.MONIER,A.HOUDUSSE,B.GOUD, JRNL AUTH 2 A.R.KHAN JRNL TITL STRUCTURAL BASIS FOR RECRUITMENT OF RAB6-INTERACTING PROTEIN JRNL TITL 2 1 TO GOLGI VIA A RUN DOMAIN. JRNL REF STRUCTURE V. 17 21 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19141279 JRNL DOI 10.1016/J.STR.2008.10.014 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1994733.590 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 625 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2415 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 91 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3802 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 101.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 100.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.47 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.54 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.47 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 2.823 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 58.48 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GTP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GTP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESOLUTION-DEPENDENT WEIGHTING SCHEME REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3CWZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : BM14; ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978; 0.934 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; CCD REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE; ADSC REMARK 200 QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18629 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 2% PEG 4000, 3% MPD, PH REMARK 280 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.75000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 199.50000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 149.62500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 249.37500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.87500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 99.75000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 199.50000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 249.37500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 149.62500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 49.87500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 8 REMARK 465 ASN A 9 REMARK 465 PRO A 10 REMARK 465 LEU A 11 REMARK 465 GLU A 178 REMARK 465 SER A 179 REMARK 465 THR A 180 REMARK 465 GLN A 181 REMARK 465 ASP A 182 REMARK 465 ARG A 183 REMARK 465 SER A 184 REMARK 465 ARG A 185 REMARK 465 GLU A 186 REMARK 465 ASP A 187 REMARK 465 MET A 188 REMARK 465 ILE A 189 REMARK 465 ASP A 190 REMARK 465 ILE A 191 REMARK 465 LYS A 192 REMARK 465 LEU A 193 REMARK 465 GLU A 194 REMARK 465 LYS A 195 REMARK 465 GLU B 683 REMARK 465 HIS B 684 REMARK 465 LEU B 685 REMARK 465 ARG B 686 REMARK 465 LEU B 687 REMARK 465 ASP B 688 REMARK 465 ASN B 689 REMARK 465 ASP B 690 REMARK 465 GLN B 691 REMARK 465 ARG B 692 REMARK 465 GLU B 693 REMARK 465 LYS B 694 REMARK 465 TYR B 695 REMARK 465 ILE B 696 REMARK 465 GLN B 697 REMARK 465 GLU B 698 REMARK 465 ALA B 699 REMARK 465 ARG B 700 REMARK 465 ASN B 701 REMARK 465 MET B 702 REMARK 465 GLY B 703 REMARK 465 SER B 704 REMARK 465 THR B 705 REMARK 465 ILE B 706 REMARK 465 ARG B 707 REMARK 465 GLN B 708 REMARK 465 PRO B 709 REMARK 465 LYS B 710 REMARK 465 LEU B 711 REMARK 465 SER B 712 REMARK 465 HIS B 755 REMARK 465 GLY B 756 REMARK 465 GLU B 757 REMARK 465 VAL B 758 REMARK 465 THR B 809 REMARK 465 SER B 810 REMARK 465 GLY B 811 REMARK 465 SER B 812 REMARK 465 LEU B 813 REMARK 465 SER B 814 REMARK 465 THR B 815 REMARK 465 SER B 816 REMARK 465 GLY B 817 REMARK 465 ILE B 818 REMARK 465 LEU B 819 REMARK 465 LEU B 820 REMARK 465 ASP B 821 REMARK 465 SER B 822 REMARK 465 GLU B 823 REMARK 465 ARG B 824 REMARK 465 ARG B 825 REMARK 465 LYS B 826 REMARK 465 SER B 827 REMARK 465 ASP B 828 REMARK 465 ALA B 829 REMARK 465 SER B 830 REMARK 465 ASP B 1049 REMARK 465 GLU B 1050 REMARK 465 ARG B 1051 REMARK 465 PRO B 1052 REMARK 465 CYS B 1053 REMARK 465 ARG B 1054 REMARK 465 THR B 1055 REMARK 465 PRO B 1056 REMARK 465 PRO B 1057 REMARK 465 LEU B 1058 REMARK 465 GLN B 1059 REMARK 465 GLN B 1060 REMARK 465 SER B 1061 REMARK 465 PRO B 1062 REMARK 465 SER B 1063 REMARK 465 VAL B 1064 REMARK 465 ILE B 1065 REMARK 465 ARG B 1066 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 MET A 177 CG SD CE REMARK 470 LEU B 714 CG CD1 CD2 REMARK 470 LEU B 753 CG CD1 CD2 REMARK 470 ARG B 845 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 941 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 23 35.86 75.47 REMARK 500 ASP A 36 72.46 29.68 REMARK 500 ASN A 149 76.94 -67.86 REMARK 500 TYR A 161 98.61 -57.13 REMARK 500 ASN A 162 58.30 35.20 REMARK 500 SER B 715 89.34 -154.96 REMARK 500 VAL B 786 119.38 -36.46 REMARK 500 ASN B 849 42.62 -106.12 REMARK 500 LYS B 871 40.14 73.42 REMARK 500 ASN B 970 36.98 77.22 REMARK 500 ALA B 998 52.81 -94.19 REMARK 500 CYS B1020 -83.21 -126.87 REMARK 500 ASP B1029 -132.83 44.49 REMARK 500 PRO B1046 -156.13 -98.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 27 OG1 REMARK 620 2 THR A 45 OG1 71.5 REMARK 620 3 ASP A 68 OD1 89.4 135.9 REMARK 620 4 ASP A 68 OD2 63.8 93.3 43.2 REMARK 620 5 GTP A4200 O2B 60.3 79.3 125.5 123.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 4200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BBP RELATED DB: PDB REMARK 900 RAB6-GTP:GCC185 RAB BINDING DOMAIN COMPLEX REMARK 900 RELATED ID: 2GIL RELATED DB: PDB REMARK 900 STRUCTURE OF THE EXTREMELY SLOW GTPASE RAB6A IN THE GTP BOUND FORM REMARK 900 AT 1.8 RESOLUTION REMARK 900 RELATED ID: 1D5C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM RAB6 COMPLEXED WITH GDP REMARK 900 RELATED ID: 2DWK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RUN DOMAIN OF MOUSE RAP2 INTERACTING REMARK 900 PROTEIN X REMARK 900 RELATED ID: 1LOX RELATED DB: PDB REMARK 900 RABBIT RETICULOCYTE 15-LIPOXYGENASE DBREF 3CWZ A 8 195 UNP P20340 RAB6A_HUMAN 8 195 DBREF 3CWZ B 707 1066 UNP Q6PAL8 RA6I1_MOUSE 707 1090 SEQADV 3CWZ LEU A 72 UNP P20340 GLN 72 ENGINEERED MUTATION SEQRES 1 A 188 GLY ASN PRO LEU ARG LYS PHE LYS LEU VAL PHE LEU GLY SEQRES 2 A 188 GLU GLN SER VAL GLY LYS THR SER LEU ILE THR ARG PHE SEQRES 3 A 188 MET TYR ASP SER PHE ASP ASN THR TYR GLN ALA THR ILE SEQRES 4 A 188 GLY ILE ASP PHE LEU SER LYS THR MET TYR LEU GLU ASP SEQRES 5 A 188 ARG THR VAL ARG LEU GLN LEU TRP ASP THR ALA GLY LEU SEQRES 6 A 188 GLU ARG PHE ARG SER LEU ILE PRO SER TYR ILE ARG ASP SEQRES 7 A 188 SER THR VAL ALA VAL VAL VAL TYR ASP ILE THR ASN VAL SEQRES 8 A 188 ASN SER PHE GLN GLN THR THR LYS TRP ILE ASP ASP VAL SEQRES 9 A 188 ARG THR GLU ARG GLY SER ASP VAL ILE ILE MET LEU VAL SEQRES 10 A 188 GLY ASN LYS THR ASP LEU ALA ASP LYS ARG GLN VAL SER SEQRES 11 A 188 ILE GLU GLU GLY GLU ARG LYS ALA LYS GLU LEU ASN VAL SEQRES 12 A 188 MET PHE ILE GLU THR SER ALA LYS ALA GLY TYR ASN VAL SEQRES 13 A 188 LYS GLN LEU PHE ARG ARG VAL ALA ALA ALA LEU PRO GLY SEQRES 14 A 188 MET GLU SER THR GLN ASP ARG SER ARG GLU ASP MET ILE SEQRES 15 A 188 ASP ILE LYS LEU GLU LYS SEQRES 1 B 384 GLU HIS LEU ARG LEU ASP ASN ASP GLN ARG GLU LYS TYR SEQRES 2 B 384 ILE GLN GLU ALA ARG ASN MET GLY SER THR ILE ARG GLN SEQRES 3 B 384 PRO LYS LEU SER ASN LEU SER PRO SER VAL ILE ALA GLN SEQRES 4 B 384 THR ASN TRP LYS PHE VAL GLU GLY LEU LEU LYS GLU CYS SEQRES 5 B 384 ARG ASN LYS THR LYS ARG MET LEU VAL GLU LYS MET GLY SEQRES 6 B 384 ARG GLU ALA VAL GLU LEU GLY HIS GLY GLU VAL ASN ILE SEQRES 7 B 384 THR GLY VAL GLU GLU ASN THR LEU ILE ALA SER LEU CYS SEQRES 8 B 384 ASP LEU LEU GLU ARG ILE TRP SER HIS GLY LEU GLN VAL SEQRES 9 B 384 LYS GLN GLY LYS SER ALA LEU TRP SER HIS LEU LEU HIS SEQRES 10 B 384 TYR GLN GLU ASN ARG GLN ARG LYS LEU THR SER GLY SER SEQRES 11 B 384 LEU SER THR SER GLY ILE LEU LEU ASP SER GLU ARG ARG SEQRES 12 B 384 LYS SER ASP ALA SER ALA VAL MET SER PRO LEU ARG ILE SEQRES 13 B 384 SER LEU ILE GLN ASP MET ARG HIS ILE GLN ASN ILE GLY SEQRES 14 B 384 GLU ILE LYS THR ASP VAL GLY LYS ALA ARG ALA TRP VAL SEQRES 15 B 384 ARG LEU SER MET GLU LYS LYS LEU LEU SER ARG HIS LEU SEQRES 16 B 384 LYS GLN LEU LEU SER ASP HIS GLU LEU THR LYS LYS LEU SEQRES 17 B 384 TYR LYS ARG TYR ALA PHE LEU ARG CYS ASP ASP GLU LYS SEQRES 18 B 384 GLU GLN PHE LEU TYR HIS LEU LEU SER PHE ASN ALA VAL SEQRES 19 B 384 ASP TYR PHE CYS PHE THR ASN VAL PHE THR THR ILE LEU SEQRES 20 B 384 ILE PRO TYR HIS ILE LEU ILE VAL PRO SER LYS LYS LEU SEQRES 21 B 384 GLY GLY SER MET PHE THR ALA ASN PRO TRP ILE CYS ILE SEQRES 22 B 384 SER GLY GLU LEU GLY GLU THR GLN ILE LEU GLN ILE PRO SEQRES 23 B 384 ARG ASN VAL LEU GLU MET THR PHE GLU CYS GLN ASN LEU SEQRES 24 B 384 GLY LYS LEU THR THR VAL GLN ILE GLY HIS ASP ASN SER SEQRES 25 B 384 GLY LEU TYR ALA LYS TRP LEU VAL GLU CYS VAL MET VAL SEQRES 26 B 384 ARG ASN GLU VAL THR GLY HIS THR TYR LYS PHE PRO CYS SEQRES 27 B 384 GLY ARG TRP LEU GLY LYS GLY MET ASP ASP GLY SER LEU SEQRES 28 B 384 GLU ARG VAL LEU VAL GLY GLU LEU LEU THR SER LEU PRO SEQRES 29 B 384 GLU VAL ASP GLU ARG PRO CYS ARG THR PRO PRO LEU GLN SEQRES 30 B 384 GLN SER PRO SER VAL ILE ARG HET MG A 302 1 HET GTP A4200 32 HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 3 MG MG 2+ FORMUL 4 GTP C10 H16 N5 O14 P3 FORMUL 5 HOH *37(H2 O) HELIX 1 1 GLY A 25 ASP A 36 1 12 HELIX 2 2 LEU A 72 SER A 77 5 6 HELIX 3 3 LEU A 78 ARG A 84 1 7 HELIX 4 4 ASN A 97 GLN A 103 1 7 HELIX 5 5 GLN A 103 ARG A 115 1 13 HELIX 6 6 SER A 137 LEU A 148 1 12 HELIX 7 7 ASN A 162 ALA A 173 1 12 HELIX 8 8 SER B 717 GLU B 749 1 33 HELIX 9 9 ASN B 759 HIS B 782 1 24 HELIX 10 10 SER B 791 LYS B 807 1 17 HELIX 11 11 SER B 839 ASN B 849 1 11 HELIX 12 12 THR B 855 LYS B 871 1 17 HELIX 13 13 LEU B 872 LEU B 881 1 10 HELIX 14 14 ASP B 883 TYR B 891 1 9 HELIX 15 15 CYS B 899 LEU B 911 1 13 HELIX 16 16 SER B 912 ALA B 915 5 4 SHEET 1 A 6 ILE A 48 THR A 54 0 SHEET 2 A 6 ARG A 63 THR A 69 -1 O LEU A 66 N LEU A 51 SHEET 3 A 6 LYS A 13 LEU A 19 1 N PHE A 14 O GLN A 65 SHEET 4 A 6 VAL A 88 ASP A 94 1 O VAL A 90 N VAL A 17 SHEET 5 A 6 ILE A 120 ASN A 126 1 O VAL A 124 N TYR A 93 SHEET 6 A 6 MET A 151 GLU A 154 1 O MET A 151 N LEU A 123 SHEET 1 B 5 GLU B 973 GLN B 979 0 SHEET 2 B 5 LEU B 929 PRO B 938 -1 N TYR B 932 O PHE B 976 SHEET 3 B 5 TRP B1000 ASN B1009 -1 O ARG B1008 N HIS B 933 SHEET 4 B 5 THR B1015 LEU B1024 -1 O PHE B1018 N VAL B1005 SHEET 5 B 5 GLU B1040 LEU B1041 -1 O GLU B1040 N LYS B1017 SHEET 1 C 4 LEU B 965 GLN B 966 0 SHEET 2 C 4 PRO B 951 GLY B 957 -1 N ILE B 953 O LEU B 965 SHEET 3 C 4 LEU B 984 HIS B 991 -1 O THR B 985 N SER B 956 SHEET 4 C 4 GLU B1034 VAL B1038 -1 O LEU B1037 N VAL B 987 LINK OG1 THR A 27 MG MG A 302 1555 1555 2.32 LINK OG1 THR A 45 MG MG A 302 1555 1555 2.47 LINK OD1 ASP A 68 MG MG A 302 1555 1555 2.96 LINK OD2 ASP A 68 MG MG A 302 1555 1555 3.00 LINK MG MG A 302 O2B GTP A4200 1555 1555 2.56 CISPEP 1 LEU B 1045 PRO B 1046 0 -0.22 SITE 1 AC1 5 LYS A 26 THR A 27 THR A 45 ASP A 68 SITE 2 AC1 5 THR A 69 SITE 1 AC2 21 GLN A 22 SER A 23 GLY A 25 LYS A 26 SITE 2 AC2 21 THR A 27 SER A 28 PHE A 38 ASN A 40 SITE 3 AC2 21 TYR A 42 GLN A 43 ALA A 44 THR A 45 SITE 4 AC2 21 ALA A 70 GLY A 71 ASN A 126 LYS A 127 SITE 5 AC2 21 ASP A 129 LEU A 130 SER A 156 ALA A 157 SITE 6 AC2 21 LYS A 158 CRYST1 100.240 100.240 299.250 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009976 0.005760 0.000000 0.00000 SCALE2 0.000000 0.011519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003342 0.00000