HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-APR-08 3CYM TITLE CRYSTAL STRUCTURE OF PROTEIN BAD_0989 FROM BIFIDOBACTERIUM TITLE 2 ADOLESCENTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN BAD_0989; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM ADOLESCENTIS ATCC 15703; SOURCE 3 ORGANISM_TAXID: 367928; SOURCE 4 STRAIN: DSM 20083; SOURCE 5 ATCC: 15703; SOURCE 6 GENE: BAD_0989; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, UNCHARACTERIZED PROTEIN, KEYWDS 2 RIBONUCLEASE D, EXONUCLEASE, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,S.OZYURT,J.FREEMAN,S.CHANG,K.BAIN,S.R.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 9 21-FEB-24 3CYM 1 REMARK REVDAT 8 03-FEB-21 3CYM 1 AUTHOR JRNL REMARK SEQADV REVDAT 8 2 1 LINK REVDAT 7 14-NOV-18 3CYM 1 AUTHOR REVDAT 6 25-OCT-17 3CYM 1 REMARK REVDAT 5 13-JUL-11 3CYM 1 VERSN REVDAT 4 09-JUN-09 3CYM 1 REVDAT REVDAT 3 24-FEB-09 3CYM 1 VERSN REVDAT 2 23-DEC-08 3CYM 1 AUTHOR KEYWDS REVDAT 1 27-MAY-08 3CYM 0 JRNL AUTH Y.PATSKOVSKY,S.OZYURT,J.FREEMAN,S.CHANG,K.BAIN, JRNL AUTH 2 S.R.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PROTEIN BAD_0989 FROM BIFIDOBACTERIUM JRNL TITL 2 ADOLESCENTIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 24059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 791 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1800 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.320 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.256 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.244 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.047 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.851 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3638 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4960 ; 1.200 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 466 ; 5.118 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;33.540 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 659 ;18.441 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;17.311 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 527 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2840 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1707 ; 0.151 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2466 ; 0.292 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 436 ; 0.180 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.092 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 70 ; 0.111 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.208 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2170 ; 2.661 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3521 ; 3.948 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1542 ; 4.920 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1416 ; 7.086 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 77.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34422 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.5, 10% PEG 3350, REMARK 280 200MM PROLINE, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.08150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.59800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.21100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.59800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.08150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.21100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE MONOMERIC ASSEMBLY OF THE BIOLOGICAL REMARK 300 UNIT THAT IS SHOWN IN REMARK 350 IS PUTATIVE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 331 REMARK 465 ASP A 332 REMARK 465 GLY A 333 REMARK 465 GLY A 334 REMARK 465 ALA A 335 REMARK 465 ALA A 336 REMARK 465 ARG A 337 REMARK 465 ARG A 338 REMARK 465 HIS A 339 REMARK 465 GLU A 340 REMARK 465 SER A 341 REMARK 465 GLN A 342 REMARK 465 SER A 343 REMARK 465 ALA A 344 REMARK 465 HIS A 433 REMARK 465 HIS A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 46 52.59 -95.23 REMARK 500 PHE A 49 -65.50 -109.57 REMARK 500 ASP A 63 109.89 -55.96 REMARK 500 ASP A 98 75.88 61.36 REMARK 500 HIS A 218 37.81 -99.12 REMARK 500 LYS A 269 70.58 45.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42 OD2 REMARK 620 2 GLU A 44 OE2 87.6 REMARK 620 3 ASP A 170 OD2 81.9 101.6 REMARK 620 4 HOH A 605 O 73.4 144.7 104.8 REMARK 620 5 HOH A 637 O 99.1 79.1 178.8 74.9 REMARK 620 6 HOH A 699 O 176.0 88.9 96.7 110.6 82.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42 OD1 REMARK 620 2 HOH A 605 O 76.6 REMARK 620 3 HOH A 637 O 82.5 67.4 REMARK 620 4 HOH A 748 O 129.4 111.0 147.8 REMARK 620 5 HOH A 749 O 58.4 88.2 138.2 71.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11089C RELATED DB: TARGETDB DBREF 3CYM A 2 430 UNP A1A237 A1A237_BIFAA 2 430 SEQADV 3CYM MET A -1 UNP A1A237 EXPRESSION TAG SEQADV 3CYM SER A 0 UNP A1A237 EXPRESSION TAG SEQADV 3CYM LEU A 1 UNP A1A237 EXPRESSION TAG SEQADV 3CYM GLU A 431 UNP A1A237 EXPRESSION TAG SEQADV 3CYM GLY A 432 UNP A1A237 EXPRESSION TAG SEQADV 3CYM HIS A 433 UNP A1A237 EXPRESSION TAG SEQADV 3CYM HIS A 434 UNP A1A237 EXPRESSION TAG SEQADV 3CYM HIS A 435 UNP A1A237 EXPRESSION TAG SEQADV 3CYM HIS A 436 UNP A1A237 EXPRESSION TAG SEQADV 3CYM HIS A 437 UNP A1A237 EXPRESSION TAG SEQADV 3CYM HIS A 438 UNP A1A237 EXPRESSION TAG SEQRES 1 A 440 MET SER LEU THR ASP GLU PRO LYS LEU LEU ALA GLU PRO SEQRES 2 A 440 ARG GLU GLY VAL PRO ASN VAL ILE ASP THR LEU PRO ALA SEQRES 3 A 440 PHE ARG ASP TYR CYS SER GLU LEU ALA SER SER HIS GLY SEQRES 4 A 440 SER LEU ALA ALA ASP ALA GLU ARG ALA SER GLY PHE ARG SEQRES 5 A 440 TYR GLY HIS GLU ASP TRP LEU VAL GLN PHE LYS ARG ASP SEQRES 6 A 440 GLY ALA GLY ILE GLY LEU LEU ASP PRO GLN ALA LEU ALA SEQRES 7 A 440 ALA ALA GLY ALA ASP TRP ASN ASP PHE ASN ARG ALA VAL SEQRES 8 A 440 GLY ASP ALA VAL TRP ILE LEU HIS ASP SER LEU GLN ASP SEQRES 9 A 440 LEU PRO GLY PHE ASP GLU LEU GLY MET GLU PRO GLN ARG SEQRES 10 A 440 LEU PHE ASP THR GLU ILE ALA ALA ARG LEU LEU GLY LEU SEQRES 11 A 440 LYS ARG PHE GLY LEU ALA ALA VAL THR GLU HIS PHE LEU SEQRES 12 A 440 GLY LEU THR LEU ALA LYS GLU HIS SER ALA ALA ASP TRP SEQRES 13 A 440 SER TYR ARG PRO LEU PRO ARG ASP TRP ARG ASN TYR ALA SEQRES 14 A 440 ALA LEU ASP VAL GLU LEU LEU ILE GLU LEU GLU THR LYS SEQRES 15 A 440 MET ARG ALA GLU LEU LYS ARG GLN GLY LYS MET GLU TRP SEQRES 16 A 440 ALA GLN GLU GLU PHE ASP TYR ALA LEU LYS GLU GLY LEU SEQRES 17 A 440 GLY PRO ARG LYS GLU HIS LEU ILE PRO TRP MET HIS VAL SEQRES 18 A 440 SER HIS ILE THR GLU VAL MET ARG ASP ARG GLN ALA LEU SEQRES 19 A 440 ALA ILE VAL ARG ALA LEU TRP THR ARG ARG ASP GLU LEU SEQRES 20 A 440 ALA ARG GLU TYR ASP ILE ALA PRO THR LEU LEU LEU SER SEQRES 21 A 440 ASP SER SER ILE ILE GLU VAL ALA LYS ARG LYS PRO HIS SEQRES 22 A 440 ASN ALA ALA GLN PHE ARG SER ILE ARG SER ILE ASN GLU SEQRES 23 A 440 ARG VAL ARG ILE HIS THR ASP SER GLU GLN ASP LYS MET SEQRES 24 A 440 PHE GLU ARG TYR ALA PRO ILE GLN ARG LYS ILE LYS PRO SEQRES 25 A 440 SER MET TRP LYS ASN ILE ILE GLN ASP ALA LEU ALA LEU SEQRES 26 A 440 PRO PRO SER GLU TRP PRO ASP VAL ASP GLY GLY ALA ALA SEQRES 27 A 440 ARG ARG HIS GLU SER GLN SER ALA SER ALA PRO LYS SER SEQRES 28 A 440 ILE ARG VAL TRP LYS GLU ARG TYR PRO GLU ARG LEU GLN SEQRES 29 A 440 VAL LEU ASN ARG VAL ARG LYS ALA VAL SER GLN ILE ALA SEQRES 30 A 440 GLU ASP THR ARG THR PRO VAL GLU ILE VAL ILE LYS PRO SEQRES 31 A 440 GLN TYR LEU ARG ASN LEU CYS TRP THR ASP GLU PRO ARG SEQRES 32 A 440 LYS ARG ASP VAL ALA ARG PHE LEU SER GLU GLN GLY ALA SEQRES 33 A 440 ARG ASP TRP GLN VAL SER LEU VAL ALA GLU SER VAL SER SEQRES 34 A 440 ARG ALA ILE GLU GLY HIS HIS HIS HIS HIS HIS HET NA A 501 1 HET NA A 502 1 HET GOL A 503 6 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA 2(NA 1+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *290(H2 O) HELIX 1 1 THR A 21 SER A 34 1 14 HELIX 2 2 ASP A 71 ALA A 78 1 8 HELIX 3 3 ASP A 81 GLY A 90 1 10 HELIX 4 4 ASP A 98 GLY A 110 1 13 HELIX 5 5 THR A 119 LEU A 126 1 8 HELIX 6 6 GLY A 132 GLY A 142 1 11 HELIX 7 7 PRO A 160 LEU A 173 1 14 HELIX 8 8 LEU A 173 GLN A 188 1 16 HELIX 9 9 LYS A 190 LEU A 206 1 17 HELIX 10 10 ILE A 214 HIS A 218 5 5 HELIX 11 11 HIS A 221 MET A 226 5 6 HELIX 12 12 ASP A 228 TYR A 249 1 22 HELIX 13 13 ALA A 252 LEU A 257 1 6 HELIX 14 14 SER A 258 LYS A 269 1 12 HELIX 15 15 ASN A 272 SER A 278 1 7 HELIX 16 16 ARG A 280 GLU A 284 5 5 HELIX 17 17 GLU A 293 ARG A 300 1 8 HELIX 18 18 TYR A 301 ARG A 306 1 6 HELIX 19 19 LYS A 309 ALA A 322 1 14 HELIX 20 20 LEU A 323 TRP A 328 5 6 HELIX 21 21 SER A 349 TYR A 357 1 9 HELIX 22 22 TYR A 357 ARG A 379 1 23 HELIX 23 23 PRO A 381 ILE A 386 1 6 HELIX 24 24 LYS A 387 TRP A 396 1 10 HELIX 25 25 GLU A 399 ARG A 403 5 5 HELIX 26 26 ASP A 404 GLY A 413 1 10 HELIX 27 27 ARG A 415 GLY A 432 1 18 SHEET 1 A 2 LYS A 6 LEU A 7 0 SHEET 2 A 2 LEU A 143 THR A 144 1 O THR A 144 N LYS A 6 SHEET 1 B 6 VAL A 18 ILE A 19 0 SHEET 2 B 6 GLY A 66 LEU A 70 1 O LEU A 69 N ILE A 19 SHEET 3 B 6 ASP A 55 ASP A 63 -1 N VAL A 58 O LEU A 70 SHEET 4 B 6 HIS A 36 ARG A 45 -1 N ASP A 42 O GLN A 59 SHEET 5 B 6 VAL A 93 LEU A 96 1 O ILE A 95 N LEU A 39 SHEET 6 B 6 ARG A 115 ASP A 118 1 O PHE A 117 N TRP A 94 LINK OD2 ASP A 42 NA NA A 501 1555 1555 2.66 LINK OD1 ASP A 42 NA NA A 502 1555 1555 2.76 LINK OE2 GLU A 44 NA NA A 501 1555 1555 2.67 LINK OD2 ASP A 170 NA NA A 501 1555 1555 2.47 LINK NA NA A 501 O HOH A 605 1555 1555 2.36 LINK NA NA A 501 O HOH A 637 1555 1555 2.36 LINK NA NA A 501 O HOH A 699 1555 1555 2.48 LINK NA NA A 502 O HOH A 605 1555 1555 2.45 LINK NA NA A 502 O HOH A 637 1555 1555 2.71 LINK NA NA A 502 O HOH A 748 1555 1555 2.42 LINK NA NA A 502 O HOH A 749 1555 1555 2.59 CISPEP 1 ARG A 157 PRO A 158 0 -5.02 SITE 1 AC1 6 ASP A 42 GLU A 44 ASP A 170 HOH A 605 SITE 2 AC1 6 HOH A 637 HOH A 699 SITE 1 AC2 6 ASP A 42 ASP A 102 HOH A 605 HOH A 637 SITE 2 AC2 6 HOH A 748 HOH A 749 SITE 1 AC3 7 GLU A 197 GLU A 383 ILE A 384 LYS A 387 SITE 2 AC3 7 ARG A 415 GLN A 418 HOH A 691 CRYST1 42.163 94.422 113.196 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023717 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008834 0.00000