HEADER HYDROLASE 30-APR-08 3CZX TITLE THE CRYSTAL STRUCTURE OF THE PUTATIVE N-ACETYLMURAMOYL-L- TITLE 2 ALANINE AMIDASE FROM NEISSERIA MENINGITIDIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE N-ACETYLMURAMOYL-L-ALANINE AMIDASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS MC58; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 STRAIN: MC58 / SEROGROUP B; SOURCE 5 GENE: GI:7226323, NMB1085; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS N-ACETYLMURAMOYL-L-ALANINE AMIDASE, STRUCTURAL GENOMICS, KEYWDS 2 PSI, MCSG, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,M.ZHOU,M.BARGASSA,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 2 24-FEB-09 3CZX 1 VERSN REVDAT 1 01-JUL-08 3CZX 0 JRNL AUTH R.ZHANG,M.ZHOU,M.BARGASSA,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE PUTATIVE JRNL TITL 2 N-ACETYLMURAMOYL-L-ALANINE AMIDASE FROM NEISSERIA JRNL TITL 3 MENINGITIDIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 78552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4146 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5233 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 250 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 797 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.27000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5514 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3740 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7442 ; 1.444 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9135 ; 0.933 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 724 ; 5.656 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;33.949 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 954 ;13.574 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.724 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 843 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6220 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1084 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1195 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4044 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2784 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2883 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 559 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.123 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 60 ; 0.227 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 54 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4398 ; 1.322 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1502 ; 0.275 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5684 ; 1.487 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2184 ; 2.647 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1758 ; 3.599 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 3CZX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-08. REMARK 100 THE RCSB ID CODE IS RCSB047416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78552 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 74.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.30500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-2000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA/K PHOSPHATE PH 6.2, 10% REMARK 280 PEG 3000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.51950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA D 0 REMARK 465 MSE D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 42 O HOH A 473 2.16 REMARK 500 OE1 GLU D 144 O HOH D 632 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 472 O HOH D 633 1454 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 68 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG C 68 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 99 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 11 177.01 69.50 REMARK 500 HIS B 11 176.58 73.29 REMARK 500 HIS C 11 172.67 75.44 REMARK 500 HIS D 11 176.77 74.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 11 NE2 REMARK 620 2 GLU A 25 OE2 90.1 REMARK 620 3 HIS A 77 ND1 102.0 93.4 REMARK 620 4 HOH A 353 O 93.2 163.7 101.5 REMARK 620 5 HOH A 337 O 162.1 92.0 95.6 80.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 11 NE2 REMARK 620 2 GLU B 25 OE2 92.0 REMARK 620 3 HIS B 77 ND1 95.7 95.1 REMARK 620 4 HOH B 496 O 91.3 161.6 102.6 REMARK 620 5 HOH B 685 O 91.0 90.4 171.2 71.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 11 NE2 REMARK 620 2 GLU C 25 OE2 91.0 REMARK 620 3 HIS C 77 ND1 96.8 93.2 REMARK 620 4 HOH C 390 O 161.3 93.3 101.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 11 NE2 REMARK 620 2 GLU D 25 OE2 98.3 REMARK 620 3 HIS D 77 ND1 103.2 88.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 301 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC83877 RELATED DB: TARGETDB DBREF 3CZX A 1 181 UNP Q9JZE9 Q9JZE9_NEIMB 1 181 DBREF 3CZX B 1 181 UNP Q9JZE9 Q9JZE9_NEIMB 1 181 DBREF 3CZX C 1 181 UNP Q9JZE9 Q9JZE9_NEIMB 1 181 DBREF 3CZX D 1 181 UNP Q9JZE9 Q9JZE9_NEIMB 1 181 SEQADV 3CZX ALA A 0 UNP Q9JZE9 EXPRESSION TAG SEQADV 3CZX ALA B 0 UNP Q9JZE9 EXPRESSION TAG SEQADV 3CZX ALA C 0 UNP Q9JZE9 EXPRESSION TAG SEQADV 3CZX ALA D 0 UNP Q9JZE9 EXPRESSION TAG SEQRES 1 A 182 ALA MSE SER LYS ILE ILE CYS LEU THR ALA GLY HIS SER SEQRES 2 A 182 ASN THR ASP PRO GLY ALA VAL ASN GLY SER ASP ARG GLU SEQRES 3 A 182 ALA ASP LEU ALA GLN ASP MSE ARG ASN ILE VAL ALA SER SEQRES 4 A 182 ILE LEU ARG ASN ASP TYR GLY LEU THR VAL LYS THR ASP SEQRES 5 A 182 GLY THR GLY LYS GLY ASN MSE PRO LEU ARG ASP ALA VAL SEQRES 6 A 182 LYS LEU ILE ARG GLY SER ASP VAL ALA ILE GLU PHE HIS SEQRES 7 A 182 THR ASN ALA ALA ALA ASN LYS THR ALA THR GLY ILE GLU SEQRES 8 A 182 ALA LEU SER THR PRO LYS ASN LYS ARG TRP CYS GLN VAL SEQRES 9 A 182 LEU GLY LYS ALA VAL ALA LYS LYS THR GLY TRP LYS LEU SEQRES 10 A 182 ARG GLY GLU ASP GLY PHE LYS PRO ASP ASN ALA GLY GLN SEQRES 11 A 182 HIS SER ARG LEU ALA TYR ALA GLN ALA GLY GLY ILE VAL SEQRES 12 A 182 PHE GLU PRO PHE PHE ILE SER ASN ASP THR ASP LEU ALA SEQRES 13 A 182 LEU PHE LYS THR THR LYS TRP GLY ILE CYS ARG ALA ILE SEQRES 14 A 182 ALA ASP ALA ILE ALA MSE GLU LEU GLY ALA ALA LYS VAL SEQRES 1 B 182 ALA MSE SER LYS ILE ILE CYS LEU THR ALA GLY HIS SER SEQRES 2 B 182 ASN THR ASP PRO GLY ALA VAL ASN GLY SER ASP ARG GLU SEQRES 3 B 182 ALA ASP LEU ALA GLN ASP MSE ARG ASN ILE VAL ALA SER SEQRES 4 B 182 ILE LEU ARG ASN ASP TYR GLY LEU THR VAL LYS THR ASP SEQRES 5 B 182 GLY THR GLY LYS GLY ASN MSE PRO LEU ARG ASP ALA VAL SEQRES 6 B 182 LYS LEU ILE ARG GLY SER ASP VAL ALA ILE GLU PHE HIS SEQRES 7 B 182 THR ASN ALA ALA ALA ASN LYS THR ALA THR GLY ILE GLU SEQRES 8 B 182 ALA LEU SER THR PRO LYS ASN LYS ARG TRP CYS GLN VAL SEQRES 9 B 182 LEU GLY LYS ALA VAL ALA LYS LYS THR GLY TRP LYS LEU SEQRES 10 B 182 ARG GLY GLU ASP GLY PHE LYS PRO ASP ASN ALA GLY GLN SEQRES 11 B 182 HIS SER ARG LEU ALA TYR ALA GLN ALA GLY GLY ILE VAL SEQRES 12 B 182 PHE GLU PRO PHE PHE ILE SER ASN ASP THR ASP LEU ALA SEQRES 13 B 182 LEU PHE LYS THR THR LYS TRP GLY ILE CYS ARG ALA ILE SEQRES 14 B 182 ALA ASP ALA ILE ALA MSE GLU LEU GLY ALA ALA LYS VAL SEQRES 1 C 182 ALA MSE SER LYS ILE ILE CYS LEU THR ALA GLY HIS SER SEQRES 2 C 182 ASN THR ASP PRO GLY ALA VAL ASN GLY SER ASP ARG GLU SEQRES 3 C 182 ALA ASP LEU ALA GLN ASP MSE ARG ASN ILE VAL ALA SER SEQRES 4 C 182 ILE LEU ARG ASN ASP TYR GLY LEU THR VAL LYS THR ASP SEQRES 5 C 182 GLY THR GLY LYS GLY ASN MSE PRO LEU ARG ASP ALA VAL SEQRES 6 C 182 LYS LEU ILE ARG GLY SER ASP VAL ALA ILE GLU PHE HIS SEQRES 7 C 182 THR ASN ALA ALA ALA ASN LYS THR ALA THR GLY ILE GLU SEQRES 8 C 182 ALA LEU SER THR PRO LYS ASN LYS ARG TRP CYS GLN VAL SEQRES 9 C 182 LEU GLY LYS ALA VAL ALA LYS LYS THR GLY TRP LYS LEU SEQRES 10 C 182 ARG GLY GLU ASP GLY PHE LYS PRO ASP ASN ALA GLY GLN SEQRES 11 C 182 HIS SER ARG LEU ALA TYR ALA GLN ALA GLY GLY ILE VAL SEQRES 12 C 182 PHE GLU PRO PHE PHE ILE SER ASN ASP THR ASP LEU ALA SEQRES 13 C 182 LEU PHE LYS THR THR LYS TRP GLY ILE CYS ARG ALA ILE SEQRES 14 C 182 ALA ASP ALA ILE ALA MSE GLU LEU GLY ALA ALA LYS VAL SEQRES 1 D 182 ALA MSE SER LYS ILE ILE CYS LEU THR ALA GLY HIS SER SEQRES 2 D 182 ASN THR ASP PRO GLY ALA VAL ASN GLY SER ASP ARG GLU SEQRES 3 D 182 ALA ASP LEU ALA GLN ASP MSE ARG ASN ILE VAL ALA SER SEQRES 4 D 182 ILE LEU ARG ASN ASP TYR GLY LEU THR VAL LYS THR ASP SEQRES 5 D 182 GLY THR GLY LYS GLY ASN MSE PRO LEU ARG ASP ALA VAL SEQRES 6 D 182 LYS LEU ILE ARG GLY SER ASP VAL ALA ILE GLU PHE HIS SEQRES 7 D 182 THR ASN ALA ALA ALA ASN LYS THR ALA THR GLY ILE GLU SEQRES 8 D 182 ALA LEU SER THR PRO LYS ASN LYS ARG TRP CYS GLN VAL SEQRES 9 D 182 LEU GLY LYS ALA VAL ALA LYS LYS THR GLY TRP LYS LEU SEQRES 10 D 182 ARG GLY GLU ASP GLY PHE LYS PRO ASP ASN ALA GLY GLN SEQRES 11 D 182 HIS SER ARG LEU ALA TYR ALA GLN ALA GLY GLY ILE VAL SEQRES 12 D 182 PHE GLU PRO PHE PHE ILE SER ASN ASP THR ASP LEU ALA SEQRES 13 D 182 LEU PHE LYS THR THR LYS TRP GLY ILE CYS ARG ALA ILE SEQRES 14 D 182 ALA ASP ALA ILE ALA MSE GLU LEU GLY ALA ALA LYS VAL MODRES 3CZX MSE A 1 MET SELENOMETHIONINE MODRES 3CZX MSE A 32 MET SELENOMETHIONINE MODRES 3CZX MSE A 58 MET SELENOMETHIONINE MODRES 3CZX MSE A 174 MET SELENOMETHIONINE MODRES 3CZX MSE B 1 MET SELENOMETHIONINE MODRES 3CZX MSE B 32 MET SELENOMETHIONINE MODRES 3CZX MSE B 58 MET SELENOMETHIONINE MODRES 3CZX MSE B 174 MET SELENOMETHIONINE MODRES 3CZX MSE C 1 MET SELENOMETHIONINE MODRES 3CZX MSE C 32 MET SELENOMETHIONINE MODRES 3CZX MSE C 58 MET SELENOMETHIONINE MODRES 3CZX MSE C 174 MET SELENOMETHIONINE MODRES 3CZX MSE D 32 MET SELENOMETHIONINE MODRES 3CZX MSE D 58 MET SELENOMETHIONINE MODRES 3CZX MSE D 174 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 32 8 HET MSE A 58 8 HET MSE A 174 8 HET MSE B 1 8 HET MSE B 32 8 HET MSE B 58 8 HET MSE B 174 8 HET MSE C 1 8 HET MSE C 32 8 HET MSE C 58 8 HET MSE C 174 8 HET MSE D 32 8 HET MSE D 58 8 HET MSE D 174 8 HET ZN A 301 1 HET ZN B 301 1 HET ZN C 301 1 HET ZN D 301 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *797(H2 O) HELIX 1 1 GLU A 25 GLY A 45 1 21 HELIX 2 2 PRO A 59 GLY A 69 1 11 HELIX 3 3 THR A 94 LYS A 96 5 3 HELIX 4 4 ASN A 97 GLY A 113 1 17 HELIX 5 5 ASN A 126 GLY A 128 5 3 HELIX 6 6 ARG A 132 ALA A 138 1 7 HELIX 7 7 ASN A 150 GLY A 177 1 28 HELIX 8 8 GLU B 25 ASP B 43 1 19 HELIX 9 9 PRO B 59 GLY B 69 1 11 HELIX 10 10 THR B 94 LYS B 96 5 3 HELIX 11 11 ASN B 97 GLY B 113 1 17 HELIX 12 12 ASN B 126 GLY B 128 5 3 HELIX 13 13 ARG B 132 ALA B 138 1 7 HELIX 14 14 ASN B 150 LEU B 176 1 27 HELIX 15 15 GLU C 25 ASP C 43 1 19 HELIX 16 16 PRO C 59 GLY C 69 1 11 HELIX 17 17 THR C 94 LYS C 96 5 3 HELIX 18 18 ASN C 97 GLY C 113 1 17 HELIX 19 19 ASN C 126 GLY C 128 5 3 HELIX 20 20 ARG C 132 ALA C 138 1 7 HELIX 21 21 ASN C 150 LEU C 176 1 27 HELIX 22 22 GLU D 25 GLY D 45 1 21 HELIX 23 23 PRO D 59 GLY D 69 1 11 HELIX 24 24 THR D 94 LYS D 96 5 3 HELIX 25 25 ASN D 97 GLY D 113 1 17 HELIX 26 26 ASN D 126 GLY D 128 5 3 HELIX 27 27 ARG D 132 ALA D 138 1 7 HELIX 28 28 ASN D 150 GLY D 177 1 28 SHEET 1 A 6 VAL A 48 THR A 50 0 SHEET 2 A 6 ILE A 5 ALA A 9 1 N ILE A 5 O LYS A 49 SHEET 3 A 6 VAL A 72 PHE A 76 1 O ILE A 74 N THR A 8 SHEET 4 A 6 ILE A 141 GLU A 144 1 O ILE A 141 N GLU A 75 SHEET 5 A 6 GLU A 90 SER A 93 -1 N GLU A 90 O GLU A 144 SHEET 6 A 6 PHE A 122 PRO A 124 1 O LYS A 123 N ALA A 91 SHEET 1 B 2 VAL A 19 ASN A 20 0 SHEET 2 B 2 ASP A 23 ARG A 24 -1 O ASP A 23 N ASN A 20 SHEET 1 C 6 THR B 47 THR B 50 0 SHEET 2 C 6 ILE B 4 ALA B 9 1 N ILE B 5 O LYS B 49 SHEET 3 C 6 VAL B 72 PHE B 76 1 O VAL B 72 N CYS B 6 SHEET 4 C 6 ILE B 141 GLU B 144 1 O ILE B 141 N GLU B 75 SHEET 5 C 6 GLU B 90 SER B 93 -1 N GLU B 90 O GLU B 144 SHEET 6 C 6 PHE B 122 PRO B 124 1 O LYS B 123 N ALA B 91 SHEET 1 D 2 VAL B 19 ASN B 20 0 SHEET 2 D 2 ASP B 23 ARG B 24 -1 O ASP B 23 N ASN B 20 SHEET 1 E 6 THR C 47 THR C 50 0 SHEET 2 E 6 ILE C 4 ALA C 9 1 N ILE C 5 O LYS C 49 SHEET 3 E 6 VAL C 72 PHE C 76 1 O VAL C 72 N CYS C 6 SHEET 4 E 6 ILE C 141 GLU C 144 1 O ILE C 141 N GLU C 75 SHEET 5 E 6 GLU C 90 SER C 93 -1 N GLU C 90 O GLU C 144 SHEET 6 E 6 PHE C 122 PRO C 124 1 O LYS C 123 N ALA C 91 SHEET 1 F 2 VAL C 19 ASN C 20 0 SHEET 2 F 2 ASP C 23 ARG C 24 -1 O ASP C 23 N ASN C 20 SHEET 1 G 6 THR D 47 THR D 50 0 SHEET 2 G 6 ILE D 4 ALA D 9 1 N ILE D 5 O LYS D 49 SHEET 3 G 6 VAL D 72 PHE D 76 1 O ILE D 74 N CYS D 6 SHEET 4 G 6 ILE D 141 GLU D 144 1 O ILE D 141 N GLU D 75 SHEET 5 G 6 GLU D 90 SER D 93 -1 N GLU D 90 O GLU D 144 SHEET 6 G 6 PHE D 122 PRO D 124 1 O LYS D 123 N ALA D 91 SHEET 1 H 2 VAL D 19 ASN D 20 0 SHEET 2 H 2 ASP D 23 ARG D 24 -1 O ASP D 23 N ASN D 20 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C ASP A 31 N MSE A 32 1555 1555 1.35 LINK C MSE A 32 N ARG A 33 1555 1555 1.33 LINK C ASN A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N PRO A 59 1555 1555 1.35 LINK C ALA A 173 N MSE A 174 1555 1555 1.32 LINK C MSE A 174 N GLU A 175 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C ASP B 31 N MSE B 32 1555 1555 1.35 LINK C MSE B 32 N ARG B 33 1555 1555 1.33 LINK C ASN B 57 N MSE B 58 1555 1555 1.32 LINK C MSE B 58 N PRO B 59 1555 1555 1.34 LINK C ALA B 173 N MSE B 174 1555 1555 1.33 LINK C MSE B 174 N GLU B 175 1555 1555 1.34 LINK C ALA C 0 N MSE C 1 1555 1555 1.33 LINK C MSE C 1 N SER C 2 1555 1555 1.33 LINK C ASP C 31 N MSE C 32 1555 1555 1.34 LINK C MSE C 32 N ARG C 33 1555 1555 1.32 LINK C ASN C 57 N MSE C 58 1555 1555 1.33 LINK C MSE C 58 N PRO C 59 1555 1555 1.35 LINK C ALA C 173 N MSE C 174 1555 1555 1.33 LINK C MSE C 174 N GLU C 175 1555 1555 1.33 LINK C ASP D 31 N MSE D 32 1555 1555 1.37 LINK C MSE D 32 N ARG D 33 1555 1555 1.32 LINK C ASN D 57 N MSE D 58 1555 1555 1.34 LINK C MSE D 58 N PRO D 59 1555 1555 1.35 LINK C ALA D 173 N MSE D 174 1555 1555 1.33 LINK C MSE D 174 N GLU D 175 1555 1555 1.33 LINK NE2 HIS A 11 ZN ZN A 301 1555 1555 2.19 LINK OE2 GLU A 25 ZN ZN A 301 1555 1555 2.14 LINK ND1 HIS A 77 ZN ZN A 301 1555 1555 2.19 LINK NE2 HIS B 11 ZN ZN B 301 1555 1555 2.21 LINK OE2 GLU B 25 ZN ZN B 301 1555 1555 2.13 LINK ND1 HIS B 77 ZN ZN B 301 1555 1555 2.29 LINK NE2 HIS C 11 ZN ZN C 301 1555 1555 2.20 LINK OE2 GLU C 25 ZN ZN C 301 1555 1555 2.18 LINK ND1 HIS C 77 ZN ZN C 301 1555 1555 2.23 LINK NE2 HIS D 11 ZN ZN D 301 1555 1555 2.19 LINK OE2 GLU D 25 ZN ZN D 301 1555 1555 2.17 LINK ND1 HIS D 77 ZN ZN D 301 1555 1555 2.28 LINK ZN ZN A 301 O HOH A 353 1555 1555 2.30 LINK ZN ZN A 301 O HOH A 337 1555 1555 2.21 LINK ZN ZN B 301 O HOH B 496 1555 1555 2.31 LINK ZN ZN B 301 O HOH B 685 1555 1555 2.22 LINK ZN ZN C 301 O HOH C 390 1555 1555 2.06 SITE 1 AC1 3 HIS C 11 GLU C 25 HIS C 77 SITE 1 AC2 3 HIS D 11 GLU D 25 HIS D 77 SITE 1 AC3 3 HIS A 11 GLU A 25 HIS A 77 SITE 1 AC4 3 HIS B 11 GLU B 25 HIS B 77 CRYST1 67.955 65.039 79.319 90.00 109.53 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014716 0.000000 0.005220 0.00000 SCALE2 0.000000 0.015375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013377 0.00000