data_3D1P # _entry.id 3D1P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3D1P RCSB RCSB047480 WWPDB D_1000047480 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC7613 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3D1P _pdbx_database_status.recvd_initial_deposition_date 2008-05-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nocek, B.' 1 'Evdokimova, E.' 2 'Kudritska, M.' 3 'Savchenko, A.' 4 'Edwards, A.M.' 5 'Joachimiak, A.' 6 'Midwest Center for Structural Genomics (MCSG)' 7 # _citation.id primary _citation.title 'Atomic resolution structure of uncharacterized protein from Saccharomyces cerevisiae.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nocek, B.' 1 primary 'Evdokimova, E.' 2 primary 'Kudritska, M.' 3 primary 'Savchenko, A.' 4 primary 'Edwards, A.M.' 5 primary 'Joachimiak, A.' 6 # _cell.entry_id 3D1P _cell.length_a 58.343 _cell.length_b 37.429 _cell.length_c 52.198 _cell.angle_alpha 90.00 _cell.angle_beta 108.86 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D1P _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative thiosulfate sulfurtransferase YOR285W' 15619.822 1 2.8.1.1 ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 water nat water 18.015 242 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)WKAV(MSE)NAWNGTESQSKNVSNIQSYSFED(MSE)KRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSH PDAFALDPLEFEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGS(MSE)NDWVSHGGDKLDL ; _entity_poly.pdbx_seq_one_letter_code_can ;MWKAVMNAWNGTESQSKNVSNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFE KQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLDL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC7613 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 TRP n 1 3 LYS n 1 4 ALA n 1 5 VAL n 1 6 MSE n 1 7 ASN n 1 8 ALA n 1 9 TRP n 1 10 ASN n 1 11 GLY n 1 12 THR n 1 13 GLU n 1 14 SER n 1 15 GLN n 1 16 SER n 1 17 LYS n 1 18 ASN n 1 19 VAL n 1 20 SER n 1 21 ASN n 1 22 ILE n 1 23 GLN n 1 24 SER n 1 25 TYR n 1 26 SER n 1 27 PHE n 1 28 GLU n 1 29 ASP n 1 30 MSE n 1 31 LYS n 1 32 ARG n 1 33 ILE n 1 34 VAL n 1 35 GLY n 1 36 LYS n 1 37 HIS n 1 38 ASP n 1 39 PRO n 1 40 ASN n 1 41 VAL n 1 42 VAL n 1 43 LEU n 1 44 VAL n 1 45 ASP n 1 46 VAL n 1 47 ARG n 1 48 GLU n 1 49 PRO n 1 50 SER n 1 51 GLU n 1 52 TYR n 1 53 SER n 1 54 ILE n 1 55 VAL n 1 56 HIS n 1 57 ILE n 1 58 PRO n 1 59 ALA n 1 60 SER n 1 61 ILE n 1 62 ASN n 1 63 VAL n 1 64 PRO n 1 65 TYR n 1 66 ARG n 1 67 SER n 1 68 HIS n 1 69 PRO n 1 70 ASP n 1 71 ALA n 1 72 PHE n 1 73 ALA n 1 74 LEU n 1 75 ASP n 1 76 PRO n 1 77 LEU n 1 78 GLU n 1 79 PHE n 1 80 GLU n 1 81 LYS n 1 82 GLN n 1 83 ILE n 1 84 GLY n 1 85 ILE n 1 86 PRO n 1 87 LYS n 1 88 PRO n 1 89 ASP n 1 90 SER n 1 91 ALA n 1 92 LYS n 1 93 GLU n 1 94 LEU n 1 95 ILE n 1 96 PHE n 1 97 TYR n 1 98 CYS n 1 99 ALA n 1 100 SER n 1 101 GLY n 1 102 LYS n 1 103 ARG n 1 104 GLY n 1 105 GLY n 1 106 GLU n 1 107 ALA n 1 108 GLN n 1 109 LYS n 1 110 VAL n 1 111 ALA n 1 112 SER n 1 113 SER n 1 114 HIS n 1 115 GLY n 1 116 TYR n 1 117 SER n 1 118 ASN n 1 119 THR n 1 120 SER n 1 121 LEU n 1 122 TYR n 1 123 PRO n 1 124 GLY n 1 125 SER n 1 126 MSE n 1 127 ASN n 1 128 ASP n 1 129 TRP n 1 130 VAL n 1 131 SER n 1 132 HIS n 1 133 GLY n 1 134 GLY n 1 135 ASP n 1 136 LYS n 1 137 LEU n 1 138 ASP n 1 139 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene YOR285W _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'S288c / FY1679' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 96604 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'Modified pET15b' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YO285_YEAST _struct_ref.pdbx_db_accession Q12305 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MWKAVMNAWNGTESQSKNVSNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFE KQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLDL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3D1P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 139 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q12305 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 139 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 139 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3D1P _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.73 _exptl_crystal.density_percent_sol 28.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.3 _exptl_crystal_grow.pdbx_details '2.4 M Ammonium sulfate, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-03-31 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.6525 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.6525 # _reflns.entry_id 3D1P _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1.8 _reflns.d_resolution_high 0.98 _reflns.d_resolution_low 40.0 _reflns.number_all 60827 _reflns.number_obs 59810 _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 0.98 _reflns_shell.d_res_low 1.00 _reflns_shell.percent_possible_all 95.5 _reflns_shell.Rmerge_I_obs 0.65 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_redundancy 3.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2868 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3D1P _refine.ls_number_reflns_obs 55370 _refine.ls_number_reflns_all 57110 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 0.98 _refine.ls_percent_reflns_obs 98.48 _refine.ls_R_factor_obs 0.10897 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1085 _refine.ls_R_factor_R_free 0.12369 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 3.0 _refine.ls_number_reflns_R_free 1740 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.984 _refine.correlation_coeff_Fo_to_Fc_free 0.984 _refine.B_iso_mean 6.817 _refine.aniso_B[1][1] -0.29 _refine.aniso_B[2][2] 0.16 _refine.aniso_B[3][3] 0.31 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.27 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.019 _refine.pdbx_overall_ESU_R_Free 0.020 _refine.overall_SU_ML 0.013 _refine.overall_SU_B 0.528 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1097 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 249 _refine_hist.number_atoms_total 1351 _refine_hist.d_res_high 0.98 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 1146 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 817 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.723 1.980 ? 1575 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.993 3.000 ? 2032 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.586 5.000 ? 164 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.748 24.600 ? 50 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.288 15.000 ? 217 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.302 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.108 0.200 ? 167 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1311 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 221 'X-RAY DIFFRACTION' ? r_nbd_refined 0.292 0.200 ? 277 'X-RAY DIFFRACTION' ? r_nbd_other 0.197 0.200 ? 914 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.186 0.200 ? 563 'X-RAY DIFFRACTION' ? r_nbtor_other 0.095 0.200 ? 554 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.207 0.200 ? 169 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.212 0.200 ? 15 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.188 0.200 ? 55 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.217 0.200 ? 46 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.791 1.500 ? 840 'X-RAY DIFFRACTION' ? r_mcbond_other 0.648 1.500 ? 274 'X-RAY DIFFRACTION' ? r_mcangle_it 2.279 2.000 ? 1155 'X-RAY DIFFRACTION' ? r_scbond_it 3.080 3.000 ? 506 'X-RAY DIFFRACTION' ? r_scangle_it 4.121 4.500 ? 402 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.343 3.000 ? 2302 'X-RAY DIFFRACTION' ? r_sphericity_free 9.189 3.000 ? 251 'X-RAY DIFFRACTION' ? r_sphericity_bonded 3.989 3.000 ? 1918 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 0.98 _refine_ls_shell.d_res_low 1.02 _refine_ls_shell.number_reflns_R_work 3998 _refine_ls_shell.R_factor_R_work 0.178 _refine_ls_shell.percent_reflns_obs 95.71 _refine_ls_shell.R_factor_R_free 0.216 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 128 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3D1P _struct.title 'Atomic resolution structure of uncharacterized protein from Saccharomyces cerevisiae' _struct.pdbx_descriptor 'Putative thiosulfate sulfurtransferase YOR285W (E.C.2.8.1.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D1P _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;atomic structure, atomic resolution structure, PSI, MCSG, mitochondrial rhodanese-like protein, Structural Genomics, Protein Structure Initiative, Midwest Center for Structural Genomics, Mitochondrion, Transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 26 ? HIS A 37 ? SER A 26 HIS A 37 1 ? 12 HELX_P HELX_P2 2 GLU A 48 ? VAL A 55 ? GLU A 48 VAL A 55 1 ? 8 HELX_P HELX_P3 3 ASP A 70 ? LEU A 74 ? ASP A 70 LEU A 74 5 ? 5 HELX_P HELX_P4 4 ASP A 75 ? GLY A 84 ? ASP A 75 GLY A 84 1 ? 10 HELX_P HELX_P5 5 GLY A 101 ? SER A 113 ? GLY A 101 SER A 113 1 ? 13 HELX_P HELX_P6 6 GLY A 124 ? HIS A 132 ? GLY A 124 HIS A 132 1 ? 9 HELX_P HELX_P7 7 GLY A 133 ? LEU A 137 ? GLY A 133 LEU A 137 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ASP 29 C ? ? ? 1_555 A MSE 30 N ? ? A ASP 29 A MSE 30 1_555 ? ? ? ? ? ? ? 1.340 ? covale2 covale ? ? A MSE 30 C ? ? ? 1_555 A LYS 31 N A ? A MSE 30 A LYS 31 1_555 ? ? ? ? ? ? ? 1.320 ? covale3 covale ? ? A MSE 30 C ? ? ? 1_555 A LYS 31 N C ? A MSE 30 A LYS 31 1_555 ? ? ? ? ? ? ? 1.320 ? covale4 covale ? ? A SER 125 C ? ? ? 1_555 A MSE 126 N ? ? A SER 125 A MSE 126 1_555 ? ? ? ? ? ? ? 1.347 ? covale5 covale ? ? A MSE 126 C ? ? ? 1_555 A ASN 127 N ? ? A MSE 126 A ASN 127 1_555 ? ? ? ? ? ? ? 1.343 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 23 ? SER A 24 ? GLN A 23 SER A 24 A 2 THR A 119 ? LEU A 121 ? THR A 119 LEU A 121 A 3 GLU A 93 ? TYR A 97 ? GLU A 93 TYR A 97 A 4 VAL A 41 ? ASP A 45 ? VAL A 41 ASP A 45 A 5 ILE A 61 ? ASN A 62 ? ILE A 61 ASN A 62 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 23 ? N GLN A 23 O LEU A 121 ? O LEU A 121 A 2 3 O SER A 120 ? O SER A 120 N PHE A 96 ? N PHE A 96 A 3 4 O ILE A 95 ? O ILE A 95 N VAL A 44 ? N VAL A 44 A 4 5 N LEU A 43 ? N LEU A 43 O ILE A 61 ? O ILE A 61 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 201' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ACT A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 PRO A 88 ? PRO A 88 . ? 1_555 ? 2 AC1 4 ASP A 89 ? ASP A 89 . ? 1_555 ? 3 AC1 4 LYS A 92 ? LYS A 92 . ? 1_555 ? 4 AC1 4 HOH D . ? HOH A 254 . ? 1_555 ? 5 AC2 4 SER A 26 ? SER A 26 . ? 1_555 ? 6 AC2 4 HOH D . ? HOH A 209 . ? 1_555 ? 7 AC2 4 HOH D . ? HOH A 375 . ? 4_545 ? 8 AC2 4 HOH D . ? HOH A 402 . ? 1_555 ? # _database_PDB_matrix.entry_id 3D1P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3D1P _atom_sites.fract_transf_matrix[1][1] 0.017140 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005854 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026717 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020244 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 TRP 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 ALA 4 4 ? ? ? A . n A 1 5 VAL 5 5 ? ? ? A . n A 1 6 MSE 6 6 ? ? ? A . n A 1 7 ASN 7 7 ? ? ? A . n A 1 8 ALA 8 8 ? ? ? A . n A 1 9 TRP 9 9 ? ? ? A . n A 1 10 ASN 10 10 ? ? ? A . n A 1 11 GLY 11 11 ? ? ? A . n A 1 12 THR 12 12 ? ? ? A . n A 1 13 GLU 13 13 ? ? ? A . n A 1 14 SER 14 14 ? ? ? A . n A 1 15 GLN 15 15 ? ? ? A . n A 1 16 SER 16 16 ? ? ? A . n A 1 17 LYS 17 17 ? ? ? A . n A 1 18 ASN 18 18 ? ? ? A . n A 1 19 VAL 19 19 ? ? ? A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 MSE 30 30 30 MSE MSE A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 HIS 37 37 37 HIS HIS A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 CYS 98 98 98 CYS CYS A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 HIS 114 114 114 HIS HIS A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 TYR 122 122 122 TYR TYR A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 MSE 126 126 126 MSE MSE A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 TRP 129 129 129 TRP TRP A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 HIS 132 132 132 HIS HIS A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 ASP 138 138 138 ASP ASP A . n A 1 139 LEU 139 139 139 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 30 A MSE 30 ? MET SELENOMETHIONINE 2 A MSE 126 A MSE 126 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-08 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 SHELXD phasing . ? 5 ARP/wARP 'model building' . ? 6 MLPHARE phasing . ? 7 CCP4 phasing . ? 8 Coot 'model building' . ? 9 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 380 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 396 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 59 ? ? 76.62 -1.53 2 1 CYS A 98 ? ? -134.34 -124.15 3 1 ALA A 99 ? ? -98.69 -62.52 4 1 SER A 125 ? ? 64.22 -164.55 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A TRP 2 ? A TRP 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A ALA 4 ? A ALA 4 5 1 Y 1 A VAL 5 ? A VAL 5 6 1 Y 1 A MSE 6 ? A MSE 6 7 1 Y 1 A ASN 7 ? A ASN 7 8 1 Y 1 A ALA 8 ? A ALA 8 9 1 Y 1 A TRP 9 ? A TRP 9 10 1 Y 1 A ASN 10 ? A ASN 10 11 1 Y 1 A GLY 11 ? A GLY 11 12 1 Y 1 A THR 12 ? A THR 12 13 1 Y 1 A GLU 13 ? A GLU 13 14 1 Y 1 A SER 14 ? A SER 14 15 1 Y 1 A GLN 15 ? A GLN 15 16 1 Y 1 A SER 16 ? A SER 16 17 1 Y 1 A LYS 17 ? A LYS 17 18 1 Y 1 A ASN 18 ? A ASN 18 19 1 Y 1 A VAL 19 ? A VAL 19 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'ACETATE ION' ACT 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 201 1001 CL CL A . C 3 ACT 1 202 1001 ACT ACT A . D 4 HOH 1 203 2 HOH HOH A . D 4 HOH 2 204 3 HOH HOH A . D 4 HOH 3 205 4 HOH HOH A . D 4 HOH 4 206 5 HOH HOH A . D 4 HOH 5 207 6 HOH HOH A . D 4 HOH 6 208 7 HOH HOH A . D 4 HOH 7 209 8 HOH HOH A . D 4 HOH 8 210 9 HOH HOH A . D 4 HOH 9 211 10 HOH HOH A . D 4 HOH 10 212 11 HOH HOH A . D 4 HOH 11 213 13 HOH HOH A . D 4 HOH 12 214 15 HOH HOH A . D 4 HOH 13 215 16 HOH HOH A . D 4 HOH 14 216 17 HOH HOH A . D 4 HOH 15 217 19 HOH HOH A . D 4 HOH 16 218 20 HOH HOH A . D 4 HOH 17 219 21 HOH HOH A . D 4 HOH 18 220 22 HOH HOH A . D 4 HOH 19 221 23 HOH HOH A . D 4 HOH 20 222 24 HOH HOH A . D 4 HOH 21 223 25 HOH HOH A . D 4 HOH 22 224 26 HOH HOH A . D 4 HOH 23 225 27 HOH HOH A . D 4 HOH 24 226 28 HOH HOH A . D 4 HOH 25 227 29 HOH HOH A . D 4 HOH 26 228 31 HOH HOH A . D 4 HOH 27 229 32 HOH HOH A . D 4 HOH 28 230 34 HOH HOH A . D 4 HOH 29 231 35 HOH HOH A . D 4 HOH 30 232 36 HOH HOH A . D 4 HOH 31 233 37 HOH HOH A . D 4 HOH 32 234 39 HOH HOH A . D 4 HOH 33 235 41 HOH HOH A . D 4 HOH 34 236 42 HOH HOH A . D 4 HOH 35 237 43 HOH HOH A . D 4 HOH 36 238 44 HOH HOH A . D 4 HOH 37 239 45 HOH HOH A . D 4 HOH 38 240 47 HOH HOH A . D 4 HOH 39 241 48 HOH HOH A . D 4 HOH 40 242 51 HOH HOH A . D 4 HOH 41 243 52 HOH HOH A . D 4 HOH 42 244 53 HOH HOH A . D 4 HOH 43 245 54 HOH HOH A . D 4 HOH 44 246 56 HOH HOH A . D 4 HOH 45 247 57 HOH HOH A . D 4 HOH 46 248 58 HOH HOH A . D 4 HOH 47 249 59 HOH HOH A . D 4 HOH 48 250 60 HOH HOH A . D 4 HOH 49 251 61 HOH HOH A . D 4 HOH 50 252 62 HOH HOH A . D 4 HOH 51 253 64 HOH HOH A . D 4 HOH 52 254 65 HOH HOH A . D 4 HOH 53 255 66 HOH HOH A . D 4 HOH 54 256 67 HOH HOH A . D 4 HOH 55 257 68 HOH HOH A . D 4 HOH 56 258 69 HOH HOH A . D 4 HOH 57 259 70 HOH HOH A . D 4 HOH 58 260 72 HOH HOH A . D 4 HOH 59 261 73 HOH HOH A . D 4 HOH 60 262 74 HOH HOH A . D 4 HOH 61 263 75 HOH HOH A . D 4 HOH 62 264 76 HOH HOH A . D 4 HOH 63 265 77 HOH HOH A . D 4 HOH 64 266 78 HOH HOH A . D 4 HOH 65 267 79 HOH HOH A . D 4 HOH 66 268 80 HOH HOH A . D 4 HOH 67 269 81 HOH HOH A . D 4 HOH 68 270 82 HOH HOH A . D 4 HOH 69 271 84 HOH HOH A . D 4 HOH 70 272 85 HOH HOH A . D 4 HOH 71 273 87 HOH HOH A . D 4 HOH 72 274 89 HOH HOH A . D 4 HOH 73 275 90 HOH HOH A . D 4 HOH 74 276 95 HOH HOH A . D 4 HOH 75 277 96 HOH HOH A . D 4 HOH 76 278 97 HOH HOH A . D 4 HOH 77 279 98 HOH HOH A . D 4 HOH 78 280 99 HOH HOH A . D 4 HOH 79 281 100 HOH HOH A . D 4 HOH 80 282 101 HOH HOH A . D 4 HOH 81 283 102 HOH HOH A . D 4 HOH 82 284 104 HOH HOH A . D 4 HOH 83 285 106 HOH HOH A . D 4 HOH 84 286 107 HOH HOH A . D 4 HOH 85 287 108 HOH HOH A . D 4 HOH 86 288 110 HOH HOH A . D 4 HOH 87 289 111 HOH HOH A . D 4 HOH 88 290 112 HOH HOH A . D 4 HOH 89 291 113 HOH HOH A . D 4 HOH 90 292 114 HOH HOH A . D 4 HOH 91 293 115 HOH HOH A . D 4 HOH 92 294 116 HOH HOH A . D 4 HOH 93 295 118 HOH HOH A . D 4 HOH 94 296 119 HOH HOH A . D 4 HOH 95 297 120 HOH HOH A . D 4 HOH 96 298 121 HOH HOH A . D 4 HOH 97 299 122 HOH HOH A . D 4 HOH 98 300 124 HOH HOH A . D 4 HOH 99 301 125 HOH HOH A . D 4 HOH 100 302 127 HOH HOH A . D 4 HOH 101 303 129 HOH HOH A . D 4 HOH 102 304 130 HOH HOH A . D 4 HOH 103 305 131 HOH HOH A . D 4 HOH 104 306 132 HOH HOH A . D 4 HOH 105 307 134 HOH HOH A . D 4 HOH 106 308 135 HOH HOH A . D 4 HOH 107 309 136 HOH HOH A . D 4 HOH 108 310 137 HOH HOH A . D 4 HOH 109 311 138 HOH HOH A . D 4 HOH 110 312 140 HOH HOH A . D 4 HOH 111 313 141 HOH HOH A . D 4 HOH 112 314 143 HOH HOH A . D 4 HOH 113 315 144 HOH HOH A . D 4 HOH 114 316 145 HOH HOH A . D 4 HOH 115 317 146 HOH HOH A . D 4 HOH 116 318 147 HOH HOH A . D 4 HOH 117 319 148 HOH HOH A . D 4 HOH 118 320 149 HOH HOH A . D 4 HOH 119 321 152 HOH HOH A . D 4 HOH 120 322 153 HOH HOH A . D 4 HOH 121 323 154 HOH HOH A . D 4 HOH 122 324 155 HOH HOH A . D 4 HOH 123 325 156 HOH HOH A . D 4 HOH 124 326 160 HOH HOH A . D 4 HOH 125 327 161 HOH HOH A . D 4 HOH 126 328 162 HOH HOH A . D 4 HOH 127 329 164 HOH HOH A . D 4 HOH 128 330 165 HOH HOH A . D 4 HOH 129 331 167 HOH HOH A . D 4 HOH 130 332 168 HOH HOH A . D 4 HOH 131 333 170 HOH HOH A . D 4 HOH 132 334 171 HOH HOH A . D 4 HOH 133 335 172 HOH HOH A . D 4 HOH 134 336 173 HOH HOH A . D 4 HOH 135 337 174 HOH HOH A . D 4 HOH 136 338 175 HOH HOH A . D 4 HOH 137 339 177 HOH HOH A . D 4 HOH 138 340 178 HOH HOH A . D 4 HOH 139 341 179 HOH HOH A . D 4 HOH 140 342 181 HOH HOH A . D 4 HOH 141 343 182 HOH HOH A . D 4 HOH 142 344 183 HOH HOH A . D 4 HOH 143 345 185 HOH HOH A . D 4 HOH 144 346 186 HOH HOH A . D 4 HOH 145 347 187 HOH HOH A . D 4 HOH 146 348 189 HOH HOH A . D 4 HOH 147 349 190 HOH HOH A . D 4 HOH 148 350 191 HOH HOH A . D 4 HOH 149 351 192 HOH HOH A . D 4 HOH 150 352 193 HOH HOH A . D 4 HOH 151 353 194 HOH HOH A . D 4 HOH 152 354 197 HOH HOH A . D 4 HOH 153 355 198 HOH HOH A . D 4 HOH 154 356 200 HOH HOH A . D 4 HOH 155 357 201 HOH HOH A . D 4 HOH 156 358 202 HOH HOH A . D 4 HOH 157 359 203 HOH HOH A . D 4 HOH 158 360 204 HOH HOH A . D 4 HOH 159 361 205 HOH HOH A . D 4 HOH 160 362 206 HOH HOH A . D 4 HOH 161 363 207 HOH HOH A . D 4 HOH 162 364 208 HOH HOH A . D 4 HOH 163 365 209 HOH HOH A . D 4 HOH 164 366 211 HOH HOH A . D 4 HOH 165 367 212 HOH HOH A . D 4 HOH 166 368 215 HOH HOH A . D 4 HOH 167 369 216 HOH HOH A . D 4 HOH 168 370 218 HOH HOH A . D 4 HOH 169 371 219 HOH HOH A . D 4 HOH 170 372 220 HOH HOH A . D 4 HOH 171 373 222 HOH HOH A . D 4 HOH 172 374 223 HOH HOH A . D 4 HOH 173 375 224 HOH HOH A . D 4 HOH 174 376 225 HOH HOH A . D 4 HOH 175 377 226 HOH HOH A . D 4 HOH 176 378 227 HOH HOH A . D 4 HOH 177 379 228 HOH HOH A . D 4 HOH 178 380 229 HOH HOH A . D 4 HOH 179 381 230 HOH HOH A . D 4 HOH 180 382 231 HOH HOH A . D 4 HOH 181 383 232 HOH HOH A . D 4 HOH 182 384 234 HOH HOH A . D 4 HOH 183 385 235 HOH HOH A . D 4 HOH 184 386 237 HOH HOH A . D 4 HOH 185 387 238 HOH HOH A . D 4 HOH 186 388 239 HOH HOH A . D 4 HOH 187 389 240 HOH HOH A . D 4 HOH 188 390 242 HOH HOH A . D 4 HOH 189 391 245 HOH HOH A . D 4 HOH 190 392 246 HOH HOH A . D 4 HOH 191 393 249 HOH HOH A . D 4 HOH 192 394 250 HOH HOH A . D 4 HOH 193 395 251 HOH HOH A . D 4 HOH 194 396 252 HOH HOH A . D 4 HOH 195 397 253 HOH HOH A . D 4 HOH 196 398 254 HOH HOH A . D 4 HOH 197 399 255 HOH HOH A . D 4 HOH 198 400 257 HOH HOH A . D 4 HOH 199 401 258 HOH HOH A . D 4 HOH 200 402 259 HOH HOH A . D 4 HOH 201 403 261 HOH HOH A . D 4 HOH 202 404 262 HOH HOH A . D 4 HOH 203 405 263 HOH HOH A . D 4 HOH 204 406 265 HOH HOH A . D 4 HOH 205 407 266 HOH HOH A . D 4 HOH 206 408 269 HOH HOH A . D 4 HOH 207 409 270 HOH HOH A . D 4 HOH 208 410 272 HOH HOH A . D 4 HOH 209 411 276 HOH HOH A . D 4 HOH 210 412 277 HOH HOH A . D 4 HOH 211 413 278 HOH HOH A . D 4 HOH 212 414 280 HOH HOH A . D 4 HOH 213 415 281 HOH HOH A . D 4 HOH 214 416 283 HOH HOH A . D 4 HOH 215 417 284 HOH HOH A . D 4 HOH 216 418 285 HOH HOH A . D 4 HOH 217 419 286 HOH HOH A . D 4 HOH 218 420 287 HOH HOH A . D 4 HOH 219 421 288 HOH HOH A . D 4 HOH 220 422 289 HOH HOH A . D 4 HOH 221 423 290 HOH HOH A . D 4 HOH 222 424 291 HOH HOH A . D 4 HOH 223 425 293 HOH HOH A . D 4 HOH 224 426 294 HOH HOH A . D 4 HOH 225 427 295 HOH HOH A . D 4 HOH 226 428 296 HOH HOH A . D 4 HOH 227 429 297 HOH HOH A . D 4 HOH 228 430 298 HOH HOH A . D 4 HOH 229 431 299 HOH HOH A . D 4 HOH 230 432 300 HOH HOH A . D 4 HOH 231 433 301 HOH HOH A . D 4 HOH 232 434 303 HOH HOH A . D 4 HOH 233 435 304 HOH HOH A . D 4 HOH 234 436 307 HOH HOH A . D 4 HOH 235 437 308 HOH HOH A . D 4 HOH 236 438 309 HOH HOH A . D 4 HOH 237 439 310 HOH HOH A . D 4 HOH 238 440 312 HOH HOH A . D 4 HOH 239 441 313 HOH HOH A . D 4 HOH 240 442 314 HOH HOH A . D 4 HOH 241 443 315 HOH HOH A . D 4 HOH 242 444 316 HOH HOH A . #