data_3D1X # _entry.id 3D1X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3D1X pdb_00003d1x 10.2210/pdb3d1x/pdb RCSB RCSB047488 ? ? WWPDB D_1000047488 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3CYW 'Same protein complexed with DARUNAVIR at 1.4A resolution' unspecified PDB 3CYX 'Mutant I50V and inhibitor saquinavir at 1.2 A resolution' unspecified PDB 3D1Y 'Mutant I54V and inhibitor SAQUINAvir at 1.05A' unspecified PDB 3D1Z 'Mutant I54M and inhibitor DARUNAVIR at 1.3A' unspecified PDB 3D20 'MUTANT I54V AND INHIBITOR DARUNAVIA at 1.05A' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3D1X _pdbx_database_status.recvd_initial_deposition_date 2008-05-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, F.' 1 'Weber, I.T.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Effect of flap mutations on structure of HIV-1 protease and inhibition by saquinavir and darunavir.' J.Mol.Biol. 381 102 115 2008 JMOBAK UK 0022-2836 0070 ? 18597780 10.1016/j.jmb.2008.05.062 1 ;Ultra-High Resolution Crystal Structure of HIV-1 Protease Mutant Reveals Two Binding Sites for Clinical Inhibitor Tmc114 ; J.Mol.Biol. 365 901 ? 2006 JMOBAK UK 0022-2836 0070 ? 16962136 10.1016/j.jmb.2006.08.007 2 ;Kinetic, Stability, and Structural Changes in High-Resolution Crystal Structures of HIV-1 Protease with Drug-Resistant Mutations L24I, I50V, and G73S. ; J.Mol.Biol. 354 789 ? 2005 JMOBAK UK 0022-2836 0070 ? 16277992 10.1016/j.jmb.2005.09.095 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, F.' 1 ? primary 'Kovalevsky, A.Y.' 2 ? primary 'Tie, Y.' 3 ? primary 'Ghosh, A.K.' 4 ? primary 'Harrison, R.W.' 5 ? primary 'Weber, I.T.' 6 ? 1 'Kovalevsky, A.Y.' 7 ? 1 'Liu, F.' 8 ? 1 'Leshchenko, S.' 9 ? 1 'Ghosh, A.K.' 10 ? 1 'Harrison, R.W.' 11 ? 1 'Weber, I.T.' 12 ? 2 'Liu, F.' 13 ? 2 'Boross, P.I.' 14 ? 2 'Wang, Y.F.' 15 ? 2 'Tozser, J.' 16 ? 2 'Louis, J.M.' 17 ? 2 'Harrison, R.W.' 18 ? 2 'Weber, I.T.' 19 ? # _cell.entry_id 3D1X _cell.length_a 58.900 _cell.length_b 86.020 _cell.length_c 46.390 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D1X _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HIV-1 Protease' 10758.715 2 3.4.23.16 I54M ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 3 non-polymer syn ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; 670.841 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 250 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Retropepsin, PR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFMKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFMKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 ILE n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 MET n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 ILE n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 ALA n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 ALA n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag-pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus type 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV1B5 _struct_ref.pdbx_db_accession P04587 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _struct_ref.pdbx_align_begin 501 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3D1X A 1 ? 99 ? P04587 501 ? 599 ? 1 99 2 1 3D1X B 1 ? 99 ? P04587 501 ? 599 ? 1 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3D1X LYS A 7 ? UNP P04587 GLN 507 'SEE REMARK 999' 7 1 1 3D1X ILE A 33 ? UNP P04587 LEU 533 'SEE REMARK 999' 33 2 1 3D1X MET A 54 ? UNP P04587 ILE 554 'engineered mutation' 54 3 1 3D1X ILE A 63 ? UNP P04587 LEU 563 'SEE REMARK 999' 63 4 1 3D1X ALA A 67 ? UNP P04587 CYS 567 'SEE REMARK 999' 67 5 1 3D1X ALA A 95 ? UNP P04587 CYS 595 'SEE REMARK 999' 95 6 2 3D1X LYS B 7 ? UNP P04587 GLN 507 'SEE REMARK 999' 7 7 2 3D1X ILE B 33 ? UNP P04587 LEU 533 'SEE REMARK 999' 33 8 2 3D1X MET B 54 ? UNP P04587 ILE 554 'engineered mutation' 54 9 2 3D1X ILE B 63 ? UNP P04587 LEU 563 'SEE REMARK 999' 63 10 2 3D1X ALA B 67 ? UNP P04587 CYS 567 'SEE REMARK 999' 67 11 2 3D1X ALA B 95 ? UNP P04587 CYS 595 'SEE REMARK 999' 95 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 ROC peptide-like . ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; 'Fortovase; SAQUINAVIR; RO 31-8959' 'C38 H50 N6 O5' 670.841 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3D1X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_percent_sol 54.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details 'SODIUM ACETATE BUFFER, 10-15% NaCl, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 95.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-06-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator SI _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength 1.00 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3D1X _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 4 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.05 _reflns.number_obs 95184 _reflns.number_all 103172 _reflns.percent_possible_obs 92.2 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.05 _reflns_shell.d_res_low 1.09 _reflns_shell.percent_possible_all 93.5 _reflns_shell.Rmerge_I_obs 0.258 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.0 _reflns_shell.pdbx_redundancy 4.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3D1X _refine.ls_number_reflns_obs 95184 _refine.ls_number_reflns_all 103172 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.05 _refine.ls_percent_reflns_obs 93.5 _refine.ls_R_factor_obs 0.1547 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.119 _refine.ls_R_factor_R_free 0.147 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 5164 _refine.ls_number_parameters 18242 _refine.ls_number_restraints 23983 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF)' _refine.pdbx_starting_model 'PDB entry 1DAZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3D1X _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 34 _refine_analyze.occupancy_sum_hydrogen 1590.00 _refine_analyze.occupancy_sum_non_hydrogen 1785.80 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1512 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 250 _refine_hist.number_atoms_total 1820 _refine_hist.d_res_high 1.05 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.017 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.036 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0313 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.094 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.108 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.046 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.038 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.094 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 3D1X _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff 0.1827 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 5164 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1502 _pdbx_refine.free_R_factor_4sig_cutoff 0.1770 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 4725 _pdbx_refine.number_reflns_obs_4sig_cutoff 95184 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3D1X _struct.title 'Crystal structure of HIV-1 mutant I54M and inhibitor saquinavir' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D1X _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text ;DRUG RESISTANCE, HIV-1, I54M, Flap mutant, AIDS, Aspartyl protease, Capsid maturation, Capsid protein, Hydrolase-hydrolase inhibitor complex, Viral nucleoprotein ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 2 ? G N N 2 ? H N N 5 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLN A 92 ? GLY A 94 ? GLN A 92 GLY A 94 5 ? 3 HELX_P HELX_P3 3 GLY B 86 ? THR B 91 ? GLY B 86 THR B 91 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 96 ASN B 98 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 2 ILE B 3 B 1 TRP A 42 ? GLY A 49 ? TRP A 42 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? ILE A 33 ? VAL A 32 ILE A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 43 GLY B 49 C 2 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 C 3 HIS B 69 ? VAL B 77 ? HIS B 69 VAL B 77 C 4 VAL B 32 ? ILE B 33 ? VAL B 32 ILE B 33 C 5 ILE B 84 ? ILE B 85 ? ILE B 84 ILE B 85 C 6 GLN B 18 ? LEU B 24 ? GLN B 18 LEU B 24 C 7 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 C 8 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 97 A 2 3 O THR B 96 ? O THR B 96 N ASN A 98 ? N ASN A 98 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 3 B 1 2 N LYS A 43 ? N LYS A 43 O GLN A 58 ? O GLN A 58 B 2 3 N ILE A 64 ? N ILE A 64 O ALA A 71 ? O ALA A 71 B 3 4 O LEU A 76 ? O LEU A 76 N ILE A 33 ? N ILE A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 43 ? N LYS B 43 O GLN B 58 ? O GLN B 58 C 2 3 N ILE B 66 ? N ILE B 66 O HIS B 69 ? O HIS B 69 C 3 4 O LEU B 76 ? O LEU B 76 N ILE B 33 ? N ILE B 33 C 4 5 N VAL B 32 ? N VAL B 32 O ILE B 84 ? O ILE B 84 C 5 6 O ILE B 85 ? O ILE B 85 N LEU B 23 ? N LEU B 23 C 6 7 O LYS B 20 ? O LYS B 20 N ILE B 13 ? N ILE B 13 C 7 8 N LYS B 14 ? N LYS B 14 O GLU B 65 ? O GLU B 65 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 502 ? 4 'BINDING SITE FOR RESIDUE CL A 502' AC2 Software B CL 501 ? 3 'BINDING SITE FOR RESIDUE CL B 501' AC3 Software B CL 503 ? 4 'BINDING SITE FOR RESIDUE CL B 503' AC4 Software A ROC 201 ? 32 'BINDING SITE FOR RESIDUE ROC A 201' AC5 Software A GOL 801 ? 10 'BINDING SITE FOR RESIDUE GOL A 801' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 THR A 74 ? THR A 74 . ? 1_555 ? 2 AC1 4 ASN A 88 ? ASN A 88 . ? 1_555 ? 3 AC1 4 HOH H . ? HOH A 1131 . ? 1_555 ? 4 AC1 4 ARG B 41 ? ARG B 41 . ? 3_556 ? 5 AC2 3 HOH H . ? HOH A 1163 . ? 1_555 ? 6 AC2 3 TRP B 6 ? TRP B 6 . ? 1_555 ? 7 AC2 3 LYS B 55 ? LYS B 55 . ? 3_556 ? 8 AC3 4 THR B 74 ? THR B 74 . ? 1_555 ? 9 AC3 4 ASN B 88 ? ASN B 88 . ? 1_555 ? 10 AC3 4 HOH I . ? HOH B 1013 . ? 1_555 ? 11 AC3 4 HOH I . ? HOH B 1144 . ? 1_555 ? 12 AC4 32 TRP A 6 ? TRP A 6 . ? 4_556 ? 13 AC4 32 ARG A 8 ? ARG A 8 . ? 1_555 ? 14 AC4 32 ASP A 25 ? ASP A 25 . ? 1_555 ? 15 AC4 32 GLY A 27 ? GLY A 27 . ? 1_555 ? 16 AC4 32 ALA A 28 ? ALA A 28 . ? 1_555 ? 17 AC4 32 ASP A 29 ? ASP A 29 . ? 1_555 ? 18 AC4 32 ASP A 30 ? ASP A 30 . ? 1_555 ? 19 AC4 32 GLY A 48 ? GLY A 48 . ? 1_555 ? 20 AC4 32 GLY A 49 ? GLY A 49 . ? 1_555 ? 21 AC4 32 ILE A 50 ? ILE A 50 . ? 1_555 ? 22 AC4 32 THR A 80 ? THR A 80 . ? 1_555 ? 23 AC4 32 PRO A 81 ? PRO A 81 . ? 1_555 ? 24 AC4 32 ILE A 84 ? ILE A 84 . ? 1_555 ? 25 AC4 32 GOL E . ? GOL A 801 . ? 1_555 ? 26 AC4 32 HOH H . ? HOH A 1005 . ? 1_555 ? 27 AC4 32 HOH H . ? HOH A 1009 . ? 1_555 ? 28 AC4 32 HOH H . ? HOH A 1228 . ? 1_555 ? 29 AC4 32 ARG B 8 ? ARG B 8 . ? 1_555 ? 30 AC4 32 ASP B 25 ? ASP B 25 . ? 1_555 ? 31 AC4 32 GLY B 27 ? GLY B 27 . ? 1_555 ? 32 AC4 32 ALA B 28 ? ALA B 28 . ? 1_555 ? 33 AC4 32 ASP B 29 ? ASP B 29 . ? 1_555 ? 34 AC4 32 ASP B 30 ? ASP B 30 . ? 1_555 ? 35 AC4 32 GLY B 48 ? GLY B 48 . ? 1_555 ? 36 AC4 32 GLY B 49 ? GLY B 49 . ? 1_555 ? 37 AC4 32 ILE B 50 ? ILE B 50 . ? 1_555 ? 38 AC4 32 PRO B 81 ? PRO B 81 . ? 1_555 ? 39 AC4 32 VAL B 82 ? VAL B 82 . ? 1_555 ? 40 AC4 32 ILE B 84 ? ILE B 84 . ? 1_555 ? 41 AC4 32 HOH I . ? HOH B 1096 . ? 1_555 ? 42 AC4 32 HOH I . ? HOH B 1117 . ? 1_555 ? 43 AC4 32 HOH I . ? HOH B 1219 . ? 1_555 ? 44 AC5 10 ASP A 29 ? ASP A 29 . ? 1_555 ? 45 AC5 10 ASP A 30 ? ASP A 30 . ? 1_555 ? 46 AC5 10 ILE A 47 ? ILE A 47 . ? 1_555 ? 47 AC5 10 GLY A 48 ? GLY A 48 . ? 1_555 ? 48 AC5 10 ROC D . ? ROC A 201 . ? 1_555 ? 49 AC5 10 HOH H . ? HOH A 1080 . ? 1_555 ? 50 AC5 10 HOH H . ? HOH A 1086 . ? 1_555 ? 51 AC5 10 HOH H . ? HOH A 1129 . ? 1_555 ? 52 AC5 10 HOH H . ? HOH A 1232 . ? 1_555 ? 53 AC5 10 HOH I . ? HOH B 1188 . ? 1_555 ? # _database_PDB_matrix.entry_id 3D1X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3D1X _atom_sites.fract_transf_matrix[1][1] 0.016978 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011625 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021556 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 MET 54 54 54 MET MET A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 TRP 6 6 6 TRP TRP B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 MET 36 36 36 MET MET B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 TRP 42 42 42 TRP TRP B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 PRO 44 44 44 PRO PRO B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 MET 46 46 46 MET MET B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 PHE 53 53 53 PHE PHE B . n B 1 54 MET 54 54 54 MET MET B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ARG 57 57 57 ARG ARG B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 GLN 61 61 61 GLN GLN B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 ILE 63 63 63 ILE ILE B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 ALA 67 67 67 ALA ALA B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 PRO 81 81 81 PRO PRO B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 ALA 95 95 95 ALA ALA B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 PHE 99 99 99 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 502 502 CL CL A . D 3 ROC 1 201 201 ROC ROC A . E 4 GOL 1 801 801 GOL GOL A . F 2 CL 1 501 501 CL CL B . G 2 CL 1 503 503 CL CL B . H 5 HOH 1 1001 1001 HOH HOH A . H 5 HOH 2 1003 1003 HOH HOH A . H 5 HOH 3 1005 1005 HOH HOH A . H 5 HOH 4 1006 1006 HOH HOH A . H 5 HOH 5 1007 1007 HOH HOH A . H 5 HOH 6 1009 1009 HOH HOH A . H 5 HOH 7 1010 1010 HOH HOH A . H 5 HOH 8 1011 1011 HOH HOH A . H 5 HOH 9 1012 1012 HOH HOH A . H 5 HOH 10 1014 1014 HOH HOH A . H 5 HOH 11 1017 1017 HOH HOH A . H 5 HOH 12 1020 1020 HOH HOH A . H 5 HOH 13 1025 1025 HOH HOH A . H 5 HOH 14 1027 1027 HOH HOH A . H 5 HOH 15 1032 1032 HOH HOH A . H 5 HOH 16 1036 1036 HOH HOH A . H 5 HOH 17 1037 1037 HOH HOH A . H 5 HOH 18 1039 1039 HOH HOH A . H 5 HOH 19 1043 1043 HOH HOH A . H 5 HOH 20 1044 1044 HOH HOH A . H 5 HOH 21 1045 1045 HOH HOH A . H 5 HOH 22 1048 1048 HOH HOH A . H 5 HOH 23 1049 1049 HOH HOH A . H 5 HOH 24 1050 1050 HOH HOH A . H 5 HOH 25 1054 1054 HOH HOH A . H 5 HOH 26 1061 1061 HOH HOH A . H 5 HOH 27 1062 1062 HOH HOH A . H 5 HOH 28 1065 1065 HOH HOH A . H 5 HOH 29 1067 1067 HOH HOH A . H 5 HOH 30 1069 1069 HOH HOH A . H 5 HOH 31 1071 1071 HOH HOH A . H 5 HOH 32 1072 1072 HOH HOH A . H 5 HOH 33 1074 1074 HOH HOH A . H 5 HOH 34 1075 1075 HOH HOH A . H 5 HOH 35 1076 1076 HOH HOH A . H 5 HOH 36 1077 1077 HOH HOH A . H 5 HOH 37 1080 1080 HOH HOH A . H 5 HOH 38 1081 1081 HOH HOH A . H 5 HOH 39 1084 1084 HOH HOH A . H 5 HOH 40 1086 1086 HOH HOH A . H 5 HOH 41 1087 1087 HOH HOH A . H 5 HOH 42 1088 1088 HOH HOH A . H 5 HOH 43 1089 1089 HOH HOH A . H 5 HOH 44 1090 1090 HOH HOH A . H 5 HOH 45 1094 1094 HOH HOH A . H 5 HOH 46 1097 1097 HOH HOH A . H 5 HOH 47 1099 1099 HOH HOH A . H 5 HOH 48 1100 1100 HOH HOH A . H 5 HOH 49 1101 1101 HOH HOH A . H 5 HOH 50 1103 1103 HOH HOH A . H 5 HOH 51 1105 1105 HOH HOH A . H 5 HOH 52 1107 1107 HOH HOH A . H 5 HOH 53 1108 1108 HOH HOH A . H 5 HOH 54 1109 1109 HOH HOH A . H 5 HOH 55 1114 1114 HOH HOH A . H 5 HOH 56 1115 1115 HOH HOH A . H 5 HOH 57 1118 1118 HOH HOH A . H 5 HOH 58 1120 1120 HOH HOH A . H 5 HOH 59 1123 1123 HOH HOH A . H 5 HOH 60 1128 1128 HOH HOH A . H 5 HOH 61 1129 1129 HOH HOH A . H 5 HOH 62 1130 1130 HOH HOH A . H 5 HOH 63 1131 1131 HOH HOH A . H 5 HOH 64 1132 1132 HOH HOH A . H 5 HOH 65 1133 1133 HOH HOH A . H 5 HOH 66 1135 1135 HOH HOH A . H 5 HOH 67 1136 1136 HOH HOH A . H 5 HOH 68 1137 1137 HOH HOH A . H 5 HOH 69 1140 1140 HOH HOH A . H 5 HOH 70 1141 1141 HOH HOH A . H 5 HOH 71 1142 1142 HOH HOH A . H 5 HOH 72 1145 1145 HOH HOH A . H 5 HOH 73 1146 1146 HOH HOH A . H 5 HOH 74 1147 1147 HOH HOH A . H 5 HOH 75 1152 1152 HOH HOH A . H 5 HOH 76 1154 1154 HOH HOH A . H 5 HOH 77 1160 1160 HOH HOH A . H 5 HOH 78 1163 1163 HOH HOH A . H 5 HOH 79 1164 1164 HOH HOH A . H 5 HOH 80 1165 1165 HOH HOH A . H 5 HOH 81 1166 1166 HOH HOH A . H 5 HOH 82 1167 1167 HOH HOH A . H 5 HOH 83 1169 1169 HOH HOH A . H 5 HOH 84 1170 1170 HOH HOH A . H 5 HOH 85 1173 1173 HOH HOH A . H 5 HOH 86 1176 1176 HOH HOH A . H 5 HOH 87 1179 1179 HOH HOH A . H 5 HOH 88 1185 1185 HOH HOH A . H 5 HOH 89 1189 1189 HOH HOH A . H 5 HOH 90 1190 1190 HOH HOH A . H 5 HOH 91 1191 1191 HOH HOH A . H 5 HOH 92 1196 1196 HOH HOH A . H 5 HOH 93 1197 1197 HOH HOH A . H 5 HOH 94 1201 1201 HOH HOH A . H 5 HOH 95 1203 1203 HOH HOH A . H 5 HOH 96 1205 1205 HOH HOH A . H 5 HOH 97 1208 1208 HOH HOH A . H 5 HOH 98 1211 1211 HOH HOH A . H 5 HOH 99 1213 1213 HOH HOH A . H 5 HOH 100 1214 1214 HOH HOH A . H 5 HOH 101 1215 1215 HOH HOH A . H 5 HOH 102 1218 1218 HOH HOH A . H 5 HOH 103 1221 1221 HOH HOH A . H 5 HOH 104 1222 1222 HOH HOH A . H 5 HOH 105 1224 1224 HOH HOH A . H 5 HOH 106 1227 1227 HOH HOH A . H 5 HOH 107 1228 1228 HOH HOH A . H 5 HOH 108 1232 1232 HOH HOH A . H 5 HOH 109 1233 1233 HOH HOH A . H 5 HOH 110 1235 1235 HOH HOH A . H 5 HOH 111 1240 1240 HOH HOH A . H 5 HOH 112 1241 1241 HOH HOH A . H 5 HOH 113 1244 1244 HOH HOH A . H 5 HOH 114 1245 1245 HOH HOH A . H 5 HOH 115 1248 1248 HOH HOH A . H 5 HOH 116 1249 1249 HOH HOH A . H 5 HOH 117 1250 1250 HOH HOH A . I 5 HOH 1 1002 1002 HOH HOH B . I 5 HOH 2 1004 1004 HOH HOH B . I 5 HOH 3 1008 1008 HOH HOH B . I 5 HOH 4 1013 1013 HOH HOH B . I 5 HOH 5 1015 1015 HOH HOH B . I 5 HOH 6 1016 1016 HOH HOH B . I 5 HOH 7 1018 1018 HOH HOH B . I 5 HOH 8 1019 1019 HOH HOH B . I 5 HOH 9 1021 1021 HOH HOH B . I 5 HOH 10 1022 1022 HOH HOH B . I 5 HOH 11 1023 1023 HOH HOH B . I 5 HOH 12 1024 1024 HOH HOH B . I 5 HOH 13 1026 1026 HOH HOH B . I 5 HOH 14 1028 1028 HOH HOH B . I 5 HOH 15 1029 1029 HOH HOH B . I 5 HOH 16 1030 1030 HOH HOH B . I 5 HOH 17 1031 1031 HOH HOH B . I 5 HOH 18 1033 1033 HOH HOH B . I 5 HOH 19 1034 1034 HOH HOH B . I 5 HOH 20 1035 1035 HOH HOH B . I 5 HOH 21 1038 1038 HOH HOH B . I 5 HOH 22 1040 1040 HOH HOH B . I 5 HOH 23 1041 1041 HOH HOH B . I 5 HOH 24 1042 1042 HOH HOH B . I 5 HOH 25 1046 1046 HOH HOH B . I 5 HOH 26 1047 1047 HOH HOH B . I 5 HOH 27 1051 1051 HOH HOH B . I 5 HOH 28 1052 1052 HOH HOH B . I 5 HOH 29 1053 1053 HOH HOH B . I 5 HOH 30 1055 1055 HOH HOH B . I 5 HOH 31 1056 1056 HOH HOH B . I 5 HOH 32 1057 1057 HOH HOH B . I 5 HOH 33 1058 1058 HOH HOH B . I 5 HOH 34 1059 1059 HOH HOH B . I 5 HOH 35 1060 1060 HOH HOH B . I 5 HOH 36 1063 1063 HOH HOH B . I 5 HOH 37 1064 1064 HOH HOH B . I 5 HOH 38 1066 1066 HOH HOH B . I 5 HOH 39 1068 1068 HOH HOH B . I 5 HOH 40 1070 1070 HOH HOH B . I 5 HOH 41 1073 1073 HOH HOH B . I 5 HOH 42 1078 1078 HOH HOH B . I 5 HOH 43 1079 1079 HOH HOH B . I 5 HOH 44 1082 1082 HOH HOH B . I 5 HOH 45 1083 1083 HOH HOH B . I 5 HOH 46 1085 1085 HOH HOH B . I 5 HOH 47 1091 1091 HOH HOH B . I 5 HOH 48 1092 1092 HOH HOH B . I 5 HOH 49 1093 1093 HOH HOH B . I 5 HOH 50 1095 1095 HOH HOH B . I 5 HOH 51 1096 1096 HOH HOH B . I 5 HOH 52 1098 1098 HOH HOH B . I 5 HOH 53 1102 1102 HOH HOH B . I 5 HOH 54 1104 1104 HOH HOH B . I 5 HOH 55 1106 1106 HOH HOH B . I 5 HOH 56 1110 1110 HOH HOH B . I 5 HOH 57 1111 1111 HOH HOH B . I 5 HOH 58 1112 1112 HOH HOH B . I 5 HOH 59 1113 1113 HOH HOH B . I 5 HOH 60 1116 1116 HOH HOH B . I 5 HOH 61 1117 1117 HOH HOH B . I 5 HOH 62 1119 1119 HOH HOH B . I 5 HOH 63 1121 1121 HOH HOH B . I 5 HOH 64 1122 1122 HOH HOH B . I 5 HOH 65 1124 1124 HOH HOH B . I 5 HOH 66 1125 1125 HOH HOH B . I 5 HOH 67 1126 1126 HOH HOH B . I 5 HOH 68 1127 1127 HOH HOH B . I 5 HOH 69 1134 1134 HOH HOH B . I 5 HOH 70 1138 1138 HOH HOH B . I 5 HOH 71 1139 1139 HOH HOH B . I 5 HOH 72 1143 1143 HOH HOH B . I 5 HOH 73 1144 1144 HOH HOH B . I 5 HOH 74 1148 1148 HOH HOH B . I 5 HOH 75 1149 1149 HOH HOH B . I 5 HOH 76 1150 1150 HOH HOH B . I 5 HOH 77 1151 1151 HOH HOH B . I 5 HOH 78 1153 1153 HOH HOH B . I 5 HOH 79 1155 1155 HOH HOH B . I 5 HOH 80 1156 1156 HOH HOH B . I 5 HOH 81 1157 1157 HOH HOH B . I 5 HOH 82 1158 1158 HOH HOH B . I 5 HOH 83 1159 1159 HOH HOH B . I 5 HOH 84 1161 1161 HOH HOH B . I 5 HOH 85 1162 1162 HOH HOH B . I 5 HOH 86 1168 1168 HOH HOH B . I 5 HOH 87 1171 1171 HOH HOH B . I 5 HOH 88 1172 1172 HOH HOH B . I 5 HOH 89 1174 1174 HOH HOH B . I 5 HOH 90 1175 1175 HOH HOH B . I 5 HOH 91 1177 1177 HOH HOH B . I 5 HOH 92 1178 1178 HOH HOH B . I 5 HOH 93 1180 1180 HOH HOH B . I 5 HOH 94 1181 1181 HOH HOH B . I 5 HOH 95 1182 1182 HOH HOH B . I 5 HOH 96 1183 1183 HOH HOH B . I 5 HOH 97 1184 1184 HOH HOH B . I 5 HOH 98 1186 1186 HOH HOH B . I 5 HOH 99 1187 1187 HOH HOH B . I 5 HOH 100 1188 1188 HOH HOH B . I 5 HOH 101 1192 1192 HOH HOH B . I 5 HOH 102 1193 1193 HOH HOH B . I 5 HOH 103 1194 1194 HOH HOH B . I 5 HOH 104 1195 1195 HOH HOH B . I 5 HOH 105 1198 1198 HOH HOH B . I 5 HOH 106 1199 1199 HOH HOH B . I 5 HOH 107 1200 1200 HOH HOH B . I 5 HOH 108 1202 1202 HOH HOH B . I 5 HOH 109 1204 1204 HOH HOH B . I 5 HOH 110 1206 1206 HOH HOH B . I 5 HOH 111 1207 1207 HOH HOH B . I 5 HOH 112 1209 1209 HOH HOH B . I 5 HOH 113 1210 1210 HOH HOH B . I 5 HOH 114 1212 1212 HOH HOH B . I 5 HOH 115 1216 1216 HOH HOH B . I 5 HOH 116 1217 1217 HOH HOH B . I 5 HOH 117 1219 1219 HOH HOH B . I 5 HOH 118 1220 1220 HOH HOH B . I 5 HOH 119 1223 1223 HOH HOH B . I 5 HOH 120 1225 1225 HOH HOH B . I 5 HOH 121 1226 1226 HOH HOH B . I 5 HOH 122 1229 1229 HOH HOH B . I 5 HOH 123 1230 1230 HOH HOH B . I 5 HOH 124 1231 1231 HOH HOH B . I 5 HOH 125 1234 1234 HOH HOH B . I 5 HOH 126 1236 1236 HOH HOH B . I 5 HOH 127 1237 1237 HOH HOH B . I 5 HOH 128 1238 1238 HOH HOH B . I 5 HOH 129 1239 1239 HOH HOH B . I 5 HOH 130 1242 1242 HOH HOH B . I 5 HOH 131 1243 1243 HOH HOH B . I 5 HOH 132 1246 1246 HOH HOH B . I 5 HOH 133 1247 1247 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_000454 _pdbx_molecule_features.name Saquinavir _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000454 _pdbx_molecule.asym_id D # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5680 ? 1 MORE -51 ? 1 'SSA (A^2)' 9340 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 1249 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-03 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-02-27 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' Other 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Derived calculations' 10 4 'Structure model' 'Structure summary' 11 5 'Structure model' 'Data collection' 12 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' database_2 3 4 'Structure model' entity 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.pdbx_synonyms' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_entity.pdbx_description' 6 4 'Structure model' '_pdbx_entity_nonpoly.name' 7 4 'Structure model' '_struct_ref_seq_dif.details' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL-97 refinement . ? 2 HKL-2000 'data collection' . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3D1X _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;THE INHIBITOR ROC IS A HYDROXYETHYLAMINE CONTAINING TRANSITION STATE MIMETIC. ; _pdbx_entry_details.sequence_details ;MUTATIONS Q7K, L33I, L63I, C67A, C95A, HAVE BEEN MADE TO STABILIZE THE PROTEASE FROM AUTOPROTEOLYSIS, WHILE RETAINING ACTIVITY SIMILAR TO WILD-TYPE HIV-1 PROTEASE ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LYS 7 ? ? CG A LYS 7 ? ? CD A LYS 7 ? ? 136.04 111.60 24.44 2.60 N 2 1 CD A ARG 41 ? ? NE A ARG 41 ? ? CZ A ARG 41 ? ? 138.42 123.60 14.82 1.40 N 3 1 NE A ARG 41 ? ? CZ A ARG 41 ? ? NH1 A ARG 41 ? ? 124.01 120.30 3.71 0.50 N 4 1 CA A ILE 50 ? B C A ILE 50 ? B N A GLY 51 ? ? 142.69 116.20 26.49 2.00 Y 5 1 O A ILE 50 ? B C A ILE 50 ? B N A GLY 51 ? ? 101.27 123.20 -21.93 1.70 Y 6 1 C A ILE 50 ? B N A GLY 51 ? ? CA A GLY 51 ? ? 169.49 122.30 47.19 2.10 Y 7 1 CD A ARG 57 ? B NE A ARG 57 ? B CZ A ARG 57 ? B 144.04 123.60 20.44 1.40 N 8 1 OE1 A GLU 65 ? ? CD A GLU 65 ? ? OE2 A GLU 65 ? ? 130.89 123.30 7.59 1.20 N 9 1 CB A LEU 97 ? A CA A LEU 97 ? ? C A LEU 97 ? ? 98.11 110.20 -12.09 1.90 N 10 1 C B ILE 50 ? B N B GLY 51 ? B CA B GLY 51 ? ? 109.16 122.30 -13.14 2.10 Y 11 1 CD B ARG 57 ? B NE B ARG 57 ? B CZ B ARG 57 ? B 132.41 123.60 8.81 1.40 N 12 1 NE B ARG 57 ? A CZ B ARG 57 ? A NH2 B ARG 57 ? A 124.44 120.30 4.14 0.50 N 13 1 NE B ARG 57 ? B CZ B ARG 57 ? B NH2 B ARG 57 ? B 116.82 120.30 -3.48 0.50 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 GOL C1 C N N 138 GOL O1 O N N 139 GOL C2 C N N 140 GOL O2 O N N 141 GOL C3 C N N 142 GOL O3 O N N 143 GOL H11 H N N 144 GOL H12 H N N 145 GOL HO1 H N N 146 GOL H2 H N N 147 GOL HO2 H N N 148 GOL H31 H N N 149 GOL H32 H N N 150 GOL HO3 H N N 151 HIS N N N N 152 HIS CA C N S 153 HIS C C N N 154 HIS O O N N 155 HIS CB C N N 156 HIS CG C Y N 157 HIS ND1 N Y N 158 HIS CD2 C Y N 159 HIS CE1 C Y N 160 HIS NE2 N Y N 161 HIS OXT O N N 162 HIS H H N N 163 HIS H2 H N N 164 HIS HA H N N 165 HIS HB2 H N N 166 HIS HB3 H N N 167 HIS HD1 H N N 168 HIS HD2 H N N 169 HIS HE1 H N N 170 HIS HE2 H N N 171 HIS HXT H N N 172 HOH O O N N 173 HOH H1 H N N 174 HOH H2 H N N 175 ILE N N N N 176 ILE CA C N S 177 ILE C C N N 178 ILE O O N N 179 ILE CB C N S 180 ILE CG1 C N N 181 ILE CG2 C N N 182 ILE CD1 C N N 183 ILE OXT O N N 184 ILE H H N N 185 ILE H2 H N N 186 ILE HA H N N 187 ILE HB H N N 188 ILE HG12 H N N 189 ILE HG13 H N N 190 ILE HG21 H N N 191 ILE HG22 H N N 192 ILE HG23 H N N 193 ILE HD11 H N N 194 ILE HD12 H N N 195 ILE HD13 H N N 196 ILE HXT H N N 197 LEU N N N N 198 LEU CA C N S 199 LEU C C N N 200 LEU O O N N 201 LEU CB C N N 202 LEU CG C N N 203 LEU CD1 C N N 204 LEU CD2 C N N 205 LEU OXT O N N 206 LEU H H N N 207 LEU H2 H N N 208 LEU HA H N N 209 LEU HB2 H N N 210 LEU HB3 H N N 211 LEU HG H N N 212 LEU HD11 H N N 213 LEU HD12 H N N 214 LEU HD13 H N N 215 LEU HD21 H N N 216 LEU HD22 H N N 217 LEU HD23 H N N 218 LEU HXT H N N 219 LYS N N N N 220 LYS CA C N S 221 LYS C C N N 222 LYS O O N N 223 LYS CB C N N 224 LYS CG C N N 225 LYS CD C N N 226 LYS CE C N N 227 LYS NZ N N N 228 LYS OXT O N N 229 LYS H H N N 230 LYS H2 H N N 231 LYS HA H N N 232 LYS HB2 H N N 233 LYS HB3 H N N 234 LYS HG2 H N N 235 LYS HG3 H N N 236 LYS HD2 H N N 237 LYS HD3 H N N 238 LYS HE2 H N N 239 LYS HE3 H N N 240 LYS HZ1 H N N 241 LYS HZ2 H N N 242 LYS HZ3 H N N 243 LYS HXT H N N 244 MET N N N N 245 MET CA C N S 246 MET C C N N 247 MET O O N N 248 MET CB C N N 249 MET CG C N N 250 MET SD S N N 251 MET CE C N N 252 MET OXT O N N 253 MET H H N N 254 MET H2 H N N 255 MET HA H N N 256 MET HB2 H N N 257 MET HB3 H N N 258 MET HG2 H N N 259 MET HG3 H N N 260 MET HE1 H N N 261 MET HE2 H N N 262 MET HE3 H N N 263 MET HXT H N N 264 PHE N N N N 265 PHE CA C N S 266 PHE C C N N 267 PHE O O N N 268 PHE CB C N N 269 PHE CG C Y N 270 PHE CD1 C Y N 271 PHE CD2 C Y N 272 PHE CE1 C Y N 273 PHE CE2 C Y N 274 PHE CZ C Y N 275 PHE OXT O N N 276 PHE H H N N 277 PHE H2 H N N 278 PHE HA H N N 279 PHE HB2 H N N 280 PHE HB3 H N N 281 PHE HD1 H N N 282 PHE HD2 H N N 283 PHE HE1 H N N 284 PHE HE2 H N N 285 PHE HZ H N N 286 PHE HXT H N N 287 PRO N N N N 288 PRO CA C N S 289 PRO C C N N 290 PRO O O N N 291 PRO CB C N N 292 PRO CG C N N 293 PRO CD C N N 294 PRO OXT O N N 295 PRO H H N N 296 PRO HA H N N 297 PRO HB2 H N N 298 PRO HB3 H N N 299 PRO HG2 H N N 300 PRO HG3 H N N 301 PRO HD2 H N N 302 PRO HD3 H N N 303 PRO HXT H N N 304 ROC C C N N 305 ROC O O N N 306 ROC N1 N Y N 307 ROC C2 C Y N 308 ROC C3 C Y N 309 ROC C4 C Y N 310 ROC C5 C Y N 311 ROC C6 C Y N 312 ROC C7 C Y N 313 ROC C8 C Y N 314 ROC C4A C Y N 315 ROC C8A C Y N 316 ROC N N N N 317 ROC CA C N S 318 ROC C1 C N N 319 ROC O1 O N N 320 ROC CB C N N 321 ROC CG C N N 322 ROC OD1 O N N 323 ROC ND2 N N N 324 ROC C9 C N R 325 ROC O2 O N N 326 ROC CA1 C N S 327 ROC N2 N N N 328 ROC CB1 C N N 329 ROC CG1 C Y N 330 ROC CD1 C Y N 331 ROC CD2 C Y N 332 ROC CE1 C Y N 333 ROC CE2 C Y N 334 ROC CZ C Y N 335 ROC N11 N N N 336 ROC CM C N N 337 ROC C21 C N S 338 ROC CC C N N 339 ROC O3 O N N 340 ROC C31 C N N 341 ROC C3A C N S 342 ROC C41 C N N 343 ROC C51 C N N 344 ROC C61 C N N 345 ROC C71 C N N 346 ROC C7A C N S 347 ROC C81 C N N 348 ROC N3 N N N 349 ROC CD C N N 350 ROC C11 C N N 351 ROC C22 C N N 352 ROC C32 C N N 353 ROC H3 H N N 354 ROC H4 H N N 355 ROC H5 H N N 356 ROC H6 H N N 357 ROC H7 H N N 358 ROC H8 H N N 359 ROC H H N N 360 ROC HA H N N 361 ROC HB2 H N N 362 ROC HB3 H N N 363 ROC HD21 H N N 364 ROC HD22 H N N 365 ROC HC H N N 366 ROC HO H N N 367 ROC HA1 H N N 368 ROC H1 H N N 369 ROC HB21 H N N 370 ROC HB31 H N N 371 ROC HD1 H N N 372 ROC HD2 H N N 373 ROC HE1 H N N 374 ROC HE2 H N N 375 ROC HZ H N N 376 ROC HM1 H N N 377 ROC HM2 H N N 378 ROC H2 H N N 379 ROC H31 H N N 380 ROC H32 H N N 381 ROC H3A H N N 382 ROC H41 H N N 383 ROC H42 H N N 384 ROC H51 H N N 385 ROC H52 H N N 386 ROC H61 H N N 387 ROC H62 H N N 388 ROC H71 H N N 389 ROC H72 H N N 390 ROC H7A H N N 391 ROC H81 H N N 392 ROC H82 H N N 393 ROC HN1 H N N 394 ROC H11 H N N 395 ROC H12 H N N 396 ROC H13 H N N 397 ROC H21 H N N 398 ROC H22 H N N 399 ROC H23 H N N 400 ROC H311 H N N 401 ROC H321 H N N 402 ROC H33 H N N 403 SER N N N N 404 SER CA C N S 405 SER C C N N 406 SER O O N N 407 SER CB C N N 408 SER OG O N N 409 SER OXT O N N 410 SER H H N N 411 SER H2 H N N 412 SER HA H N N 413 SER HB2 H N N 414 SER HB3 H N N 415 SER HG H N N 416 SER HXT H N N 417 THR N N N N 418 THR CA C N S 419 THR C C N N 420 THR O O N N 421 THR CB C N R 422 THR OG1 O N N 423 THR CG2 C N N 424 THR OXT O N N 425 THR H H N N 426 THR H2 H N N 427 THR HA H N N 428 THR HB H N N 429 THR HG1 H N N 430 THR HG21 H N N 431 THR HG22 H N N 432 THR HG23 H N N 433 THR HXT H N N 434 TRP N N N N 435 TRP CA C N S 436 TRP C C N N 437 TRP O O N N 438 TRP CB C N N 439 TRP CG C Y N 440 TRP CD1 C Y N 441 TRP CD2 C Y N 442 TRP NE1 N Y N 443 TRP CE2 C Y N 444 TRP CE3 C Y N 445 TRP CZ2 C Y N 446 TRP CZ3 C Y N 447 TRP CH2 C Y N 448 TRP OXT O N N 449 TRP H H N N 450 TRP H2 H N N 451 TRP HA H N N 452 TRP HB2 H N N 453 TRP HB3 H N N 454 TRP HD1 H N N 455 TRP HE1 H N N 456 TRP HE3 H N N 457 TRP HZ2 H N N 458 TRP HZ3 H N N 459 TRP HH2 H N N 460 TRP HXT H N N 461 TYR N N N N 462 TYR CA C N S 463 TYR C C N N 464 TYR O O N N 465 TYR CB C N N 466 TYR CG C Y N 467 TYR CD1 C Y N 468 TYR CD2 C Y N 469 TYR CE1 C Y N 470 TYR CE2 C Y N 471 TYR CZ C Y N 472 TYR OH O N N 473 TYR OXT O N N 474 TYR H H N N 475 TYR H2 H N N 476 TYR HA H N N 477 TYR HB2 H N N 478 TYR HB3 H N N 479 TYR HD1 H N N 480 TYR HD2 H N N 481 TYR HE1 H N N 482 TYR HE2 H N N 483 TYR HH H N N 484 TYR HXT H N N 485 VAL N N N N 486 VAL CA C N S 487 VAL C C N N 488 VAL O O N N 489 VAL CB C N N 490 VAL CG1 C N N 491 VAL CG2 C N N 492 VAL OXT O N N 493 VAL H H N N 494 VAL H2 H N N 495 VAL HA H N N 496 VAL HB H N N 497 VAL HG11 H N N 498 VAL HG12 H N N 499 VAL HG13 H N N 500 VAL HG21 H N N 501 VAL HG22 H N N 502 VAL HG23 H N N 503 VAL HXT H N N 504 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 ROC O C doub N N 290 ROC C C2 sing N N 291 ROC N1 C2 doub Y N 292 ROC N1 C8A sing Y N 293 ROC C2 C3 sing Y N 294 ROC C3 C4 doub Y N 295 ROC C3 H3 sing N N 296 ROC C4 C4A sing Y N 297 ROC C4 H4 sing N N 298 ROC C4A C5 doub Y N 299 ROC C4A C8A sing Y N 300 ROC C5 C6 sing Y N 301 ROC C5 H5 sing N N 302 ROC C6 C7 doub Y N 303 ROC C6 H6 sing N N 304 ROC C7 C8 sing Y N 305 ROC C7 H7 sing N N 306 ROC C8 C8A doub Y N 307 ROC C8 H8 sing N N 308 ROC N CA sing N N 309 ROC N H sing N N 310 ROC CA C1 sing N N 311 ROC CA CB sing N N 312 ROC CA HA sing N N 313 ROC C1 O1 doub N N 314 ROC CB CG sing N N 315 ROC CB HB2 sing N N 316 ROC CB HB3 sing N N 317 ROC CG OD1 doub N N 318 ROC CG ND2 sing N N 319 ROC ND2 HD21 sing N N 320 ROC ND2 HD22 sing N N 321 ROC C9 O2 sing N N 322 ROC C9 CA1 sing N N 323 ROC C9 HC sing N N 324 ROC O2 HO sing N N 325 ROC CA1 N2 sing N N 326 ROC CA1 CB1 sing N N 327 ROC CA1 HA1 sing N N 328 ROC N2 H1 sing N N 329 ROC CB1 CG1 sing N N 330 ROC CB1 HB21 sing N N 331 ROC CB1 HB31 sing N N 332 ROC CG1 CD1 doub Y N 333 ROC CG1 CD2 sing Y N 334 ROC CD1 CE1 sing Y N 335 ROC CD1 HD1 sing N N 336 ROC CD2 CE2 doub Y N 337 ROC CD2 HD2 sing N N 338 ROC CE1 CZ doub Y N 339 ROC CE1 HE1 sing N N 340 ROC CE2 CZ sing Y N 341 ROC CE2 HE2 sing N N 342 ROC CZ HZ sing N N 343 ROC N11 CM sing N N 344 ROC N11 C21 sing N N 345 ROC N11 C81 sing N N 346 ROC CM HM1 sing N N 347 ROC CM HM2 sing N N 348 ROC C21 CC sing N N 349 ROC C21 C31 sing N N 350 ROC C21 H2 sing N N 351 ROC CC O3 doub N N 352 ROC C31 C3A sing N N 353 ROC C31 H31 sing N N 354 ROC C31 H32 sing N N 355 ROC C3A C41 sing N N 356 ROC C3A C7A sing N N 357 ROC C3A H3A sing N N 358 ROC C41 C51 sing N N 359 ROC C41 H41 sing N N 360 ROC C41 H42 sing N N 361 ROC C51 C61 sing N N 362 ROC C51 H51 sing N N 363 ROC C51 H52 sing N N 364 ROC C61 C71 sing N N 365 ROC C61 H61 sing N N 366 ROC C61 H62 sing N N 367 ROC C71 C7A sing N N 368 ROC C71 H71 sing N N 369 ROC C71 H72 sing N N 370 ROC C7A C81 sing N N 371 ROC C7A H7A sing N N 372 ROC C81 H81 sing N N 373 ROC C81 H82 sing N N 374 ROC N3 CD sing N N 375 ROC N3 HN1 sing N N 376 ROC CD C11 sing N N 377 ROC CD C22 sing N N 378 ROC CD C32 sing N N 379 ROC C11 H11 sing N N 380 ROC C11 H12 sing N N 381 ROC C11 H13 sing N N 382 ROC C22 H21 sing N N 383 ROC C22 H22 sing N N 384 ROC C22 H23 sing N N 385 ROC C32 H311 sing N N 386 ROC C32 H321 sing N N 387 ROC C32 H33 sing N N 388 ROC C N sing N N 389 ROC C1 N2 sing N N 390 ROC C9 CM sing N N 391 ROC CC N3 sing N N 392 SER N CA sing N N 393 SER N H sing N N 394 SER N H2 sing N N 395 SER CA C sing N N 396 SER CA CB sing N N 397 SER CA HA sing N N 398 SER C O doub N N 399 SER C OXT sing N N 400 SER CB OG sing N N 401 SER CB HB2 sing N N 402 SER CB HB3 sing N N 403 SER OG HG sing N N 404 SER OXT HXT sing N N 405 THR N CA sing N N 406 THR N H sing N N 407 THR N H2 sing N N 408 THR CA C sing N N 409 THR CA CB sing N N 410 THR CA HA sing N N 411 THR C O doub N N 412 THR C OXT sing N N 413 THR CB OG1 sing N N 414 THR CB CG2 sing N N 415 THR CB HB sing N N 416 THR OG1 HG1 sing N N 417 THR CG2 HG21 sing N N 418 THR CG2 HG22 sing N N 419 THR CG2 HG23 sing N N 420 THR OXT HXT sing N N 421 TRP N CA sing N N 422 TRP N H sing N N 423 TRP N H2 sing N N 424 TRP CA C sing N N 425 TRP CA CB sing N N 426 TRP CA HA sing N N 427 TRP C O doub N N 428 TRP C OXT sing N N 429 TRP CB CG sing N N 430 TRP CB HB2 sing N N 431 TRP CB HB3 sing N N 432 TRP CG CD1 doub Y N 433 TRP CG CD2 sing Y N 434 TRP CD1 NE1 sing Y N 435 TRP CD1 HD1 sing N N 436 TRP CD2 CE2 doub Y N 437 TRP CD2 CE3 sing Y N 438 TRP NE1 CE2 sing Y N 439 TRP NE1 HE1 sing N N 440 TRP CE2 CZ2 sing Y N 441 TRP CE3 CZ3 doub Y N 442 TRP CE3 HE3 sing N N 443 TRP CZ2 CH2 doub Y N 444 TRP CZ2 HZ2 sing N N 445 TRP CZ3 CH2 sing Y N 446 TRP CZ3 HZ3 sing N N 447 TRP CH2 HH2 sing N N 448 TRP OXT HXT sing N N 449 TYR N CA sing N N 450 TYR N H sing N N 451 TYR N H2 sing N N 452 TYR CA C sing N N 453 TYR CA CB sing N N 454 TYR CA HA sing N N 455 TYR C O doub N N 456 TYR C OXT sing N N 457 TYR CB CG sing N N 458 TYR CB HB2 sing N N 459 TYR CB HB3 sing N N 460 TYR CG CD1 doub Y N 461 TYR CG CD2 sing Y N 462 TYR CD1 CE1 sing Y N 463 TYR CD1 HD1 sing N N 464 TYR CD2 CE2 doub Y N 465 TYR CD2 HD2 sing N N 466 TYR CE1 CZ doub Y N 467 TYR CE1 HE1 sing N N 468 TYR CE2 CZ sing Y N 469 TYR CE2 HE2 sing N N 470 TYR CZ OH sing N N 471 TYR OH HH sing N N 472 TYR OXT HXT sing N N 473 VAL N CA sing N N 474 VAL N H sing N N 475 VAL N H2 sing N N 476 VAL CA C sing N N 477 VAL CA CB sing N N 478 VAL CA HA sing N N 479 VAL C O doub N N 480 VAL C OXT sing N N 481 VAL CB CG1 sing N N 482 VAL CB CG2 sing N N 483 VAL CB HB sing N N 484 VAL CG1 HG11 sing N N 485 VAL CG1 HG12 sing N N 486 VAL CG1 HG13 sing N N 487 VAL CG2 HG21 sing N N 488 VAL CG2 HG22 sing N N 489 VAL CG2 HG23 sing N N 490 VAL OXT HXT sing N N 491 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; ROC 4 GLYCEROL GOL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DAZ _pdbx_initial_refinement_model.details 'PDB entry 1DAZ' #