HEADER RNA 08-MAY-08 3D2G TITLE STRUCTURAL BASIS OF THIAMINE PYROPHOSPHATE ANALOGUES BINDING TO THE TITLE 2 EUKARYOTIC RIBOSWITCH COMPND MOL_ID: 1; COMPND 2 MOLECULE: TPP-SPECIFIC RIBOSWITCH; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 4 OTHER_DETAILS: IN VITRO TRANSCRIPTION KEYWDS RNA, RIBOSWITCH, TPP, THIAMINE ANALOGUES, ANTIBIOTICS, ARABIDOPSIS KEYWDS 2 THALIANA, EUKARYOTE EXPDTA X-RAY DIFFRACTION AUTHOR S.THORE REVDAT 5 30-AUG-23 3D2G 1 REMARK LINK REVDAT 4 16-NOV-11 3D2G 1 VERSN HETATM REVDAT 3 24-FEB-09 3D2G 1 VERSN REVDAT 2 22-JUL-08 3D2G 1 JRNL REVDAT 1 01-JUL-08 3D2G 0 JRNL AUTH S.THORE,C.FRICK,N.BAN JRNL TITL STRUCTURAL BASIS OF THIAMINE PYROPHOSPHATE ANALOGUES BINDING JRNL TITL 2 TO THE EUKARYOTIC RIBOSWITCH JRNL REF J.AM.CHEM.SOC. V. 130 8116 2008 JRNL REFN ISSN 0002-7863 JRNL PMID 18533652 JRNL DOI 10.1021/JA801708E REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 32.57440 REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : -10.88210 REMARK 3 B13 (A**2) : -12.78150 REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22992 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.97200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 2CKY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-18% 1,6-HEXANEDIOL, 0.5MM SPERMINE, REMARK 280 10MM MAGNESIUM SULFATE, 40MM SODIUM CACODYLATE, PH 6.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.02400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.51100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.02400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.51100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG B 82 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 121 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 C B 65 O HOH B 100 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 C A 26 O3' C A 26 C3' 0.089 REMARK 500 A A 29 N7 A A 29 C8 0.049 REMARK 500 A A 43 O5' A A 43 C5' -0.160 REMARK 500 A A 43 C8 A A 43 N9 0.056 REMARK 500 C A 45 O5' C A 45 C5' -0.114 REMARK 500 G A 48 N7 G A 48 C8 -0.039 REMARK 500 C A 51 O3' C A 51 C3' 0.073 REMARK 500 G A 53 C6 G A 53 N1 -0.043 REMARK 500 G A 60 O5' G A 60 C5' -0.084 REMARK 500 G A 64 O5' G A 64 C5' -0.124 REMARK 500 G A 64 C5 G A 64 N7 0.048 REMARK 500 G A 66 C4 G A 66 C5 -0.063 REMARK 500 C A 67 C4 C A 67 C5 0.050 REMARK 500 G A 71 C4 G A 71 C5 -0.060 REMARK 500 G A 71 N7 G A 71 C8 -0.045 REMARK 500 U B 27 O3' U B 27 C3' 0.088 REMARK 500 C B 45 O5' C B 45 C5' -0.087 REMARK 500 G B 48 N7 G B 48 C8 -0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 1 N3 - C4 - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 C A 5 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 C A 6 C6 - N1 - C2 ANGL. DEV. = 2.5 DEGREES REMARK 500 A A 7 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 G A 8 C5 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 G A 9 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 G A 10 C5 - C6 - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 U A 12 C2 - N3 - C4 ANGL. DEV. = -5.1 DEGREES REMARK 500 U A 12 N1 - C2 - O2 ANGL. DEV. = -6.0 DEGREES REMARK 500 C A 14 N1 - C1' - C2' ANGL. DEV. = -8.3 DEGREES REMARK 500 C A 14 O4' - C1' - N1 ANGL. DEV. = 10.0 DEGREES REMARK 500 G A 17 C4' - C3' - C2' ANGL. DEV. = -6.9 DEGREES REMARK 500 A A 23 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 G A 25 N9 - C1' - C2' ANGL. DEV. = -7.7 DEGREES REMARK 500 G A 25 O4' - C1' - N9 ANGL. DEV. = 7.5 DEGREES REMARK 500 G A 28 N9 - C1' - C2' ANGL. DEV. = -11.2 DEGREES REMARK 500 G A 28 O4' - C1' - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 A A 31 O5' - C5' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 A A 31 O4' - C1' - N9 ANGL. DEV. = 6.5 DEGREES REMARK 500 A A 31 N1 - C6 - N6 ANGL. DEV. = 5.2 DEGREES REMARK 500 A A 31 C5 - C6 - N6 ANGL. DEV. = -5.2 DEGREES REMARK 500 A A 32 C3' - C2' - C1' ANGL. DEV. = -6.1 DEGREES REMARK 500 A A 33 C3' - O3' - P ANGL. DEV. = 11.0 DEGREES REMARK 500 U A 35 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 C A 36 O5' - C5' - C4' ANGL. DEV. = -4.9 DEGREES REMARK 500 C A 37 C6 - N1 - C2 ANGL. DEV. = 2.8 DEGREES REMARK 500 C A 38 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 U A 39 C5 - C4 - O4 ANGL. DEV. = -3.8 DEGREES REMARK 500 U A 40 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 U A 40 O4' - C1' - C2' ANGL. DEV. = -6.0 DEGREES REMARK 500 A A 43 O5' - P - OP2 ANGL. DEV. = -8.7 DEGREES REMARK 500 A A 43 O5' - C5' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 A A 43 C5' - C4' - C3' ANGL. DEV. = -15.7 DEGREES REMARK 500 A A 43 N1 - C6 - N6 ANGL. DEV. = -4.8 DEGREES REMARK 500 A A 44 N1 - C6 - N6 ANGL. DEV. = 4.0 DEGREES REMARK 500 C A 45 O5' - P - OP1 ANGL. DEV. = -6.0 DEGREES REMARK 500 C A 45 C5' - C4' - C3' ANGL. DEV. = -15.7 DEGREES REMARK 500 C A 45 N3 - C4 - N4 ANGL. DEV. = -5.8 DEGREES REMARK 500 C A 45 C5 - C4 - N4 ANGL. DEV. = 7.3 DEGREES REMARK 500 C A 46 O3' - P - OP2 ANGL. DEV. = 9.4 DEGREES REMARK 500 C A 46 O5' - C5' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 C A 46 N3 - C4 - C5 ANGL. DEV. = -2.6 DEGREES REMARK 500 C A 46 N1 - C2 - O2 ANGL. DEV. = -5.5 DEGREES REMARK 500 U A 47 OP1 - P - OP2 ANGL. DEV. = 9.8 DEGREES REMARK 500 G A 48 O4' - C1' - N9 ANGL. DEV. = -4.9 DEGREES REMARK 500 A A 49 O4' - C1' - N9 ANGL. DEV. = 6.7 DEGREES REMARK 500 A A 49 N1 - C2 - N3 ANGL. DEV. = -6.7 DEGREES REMARK 500 A A 49 C2 - N3 - C4 ANGL. DEV. = 8.1 DEGREES REMARK 500 A A 50 C6 - N1 - C2 ANGL. DEV. = 5.3 DEGREES REMARK 500 A A 50 N1 - C2 - N3 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 171 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 79 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 48 O6 REMARK 620 2 TPP A 83 O2B 159.6 REMARK 620 3 HOH A 93 O 79.7 88.4 REMARK 620 4 HOH A 94 O 75.7 105.6 142.5 REMARK 620 5 HOH A 95 O 97.1 102.2 106.4 104.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 80 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 51 OP1 REMARK 620 2 A A 52 OP2 63.5 REMARK 620 3 HOH A 96 O 74.5 68.1 REMARK 620 4 HOH A 97 O 68.1 73.5 135.2 REMARK 620 5 HOH A 98 O 151.0 89.6 106.8 95.0 REMARK 620 6 HOH B 90 O 94.4 157.2 102.2 104.5 113.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 78 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPP A 83 O1A REMARK 620 2 TPP A 83 O3B 80.1 REMARK 620 3 HOH A 89 O 145.7 72.2 REMARK 620 4 HOH A 90 O 119.8 157.7 85.6 REMARK 620 5 HOH A 91 O 115.1 78.5 79.1 99.4 REMARK 620 6 HOH A 92 O 88.0 65.5 62.5 102.9 133.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 81 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 99 O REMARK 620 2 HOH A 100 O 129.8 REMARK 620 3 HOH A 101 O 116.7 113.4 REMARK 620 4 HOH A 132 O 71.1 86.0 114.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 82 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 85 O REMARK 620 2 HOH A 86 O 71.9 REMARK 620 3 HOH A 87 O 66.0 127.8 REMARK 620 4 HOH A 88 O 91.7 110.0 100.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 79 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 84 O REMARK 620 2 C B 51 OP1 113.2 REMARK 620 3 HOH B 87 O 114.0 66.0 REMARK 620 4 HOH B 88 O 104.0 142.8 97.5 REMARK 620 5 HOH B 89 O 115.5 78.0 126.9 88.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 78 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 48 O6 REMARK 620 2 G B 66 O6 71.1 REMARK 620 3 TPP B 83 O2B 163.2 99.6 REMARK 620 4 HOH B 84 O 80.2 64.9 83.2 REMARK 620 5 HOH B 85 O 92.9 159.8 92.6 101.1 REMARK 620 6 HOH B 86 O 77.8 81.8 115.4 144.6 107.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 82 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C B 67 OP2 REMARK 620 2 HOH B 95 O 75.8 REMARK 620 3 HOH B 96 O 63.5 90.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 80 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPP B 83 O2A REMARK 620 2 HOH B 91 O 96.7 REMARK 620 3 HOH B 92 O 154.6 108.7 REMARK 620 4 HOH B 93 O 77.5 108.0 93.7 REMARK 620 5 HOH B 94 O 69.4 108.3 102.0 132.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 78 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 79 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 78 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 79 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 80 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 80 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 82 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 81 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 81 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 82 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPP A 83 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPP B 83 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CKY RELATED DB: PDB REMARK 900 RELATED ID: 3D2V RELATED DB: PDB REMARK 900 RELATED ID: 3D2X RELATED DB: PDB DBREF 3D2G A 1 77 PDB 3D2G 3D2G 1 77 DBREF 3D2G B 1 77 PDB 3D2G 3D2G 1 77 SEQRES 1 A 77 G G G A C C A G G G G U G SEQRES 2 A 77 C U U G U U C A C A G G C SEQRES 3 A 77 U G A G A A A G U C C C U SEQRES 4 A 77 U U G A A C C U G A A C A SEQRES 5 A 77 G G G U A A U G C C U G C SEQRES 6 A 77 G C A G G G A G U G U C SEQRES 1 B 77 G G G A C C A G G G G U G SEQRES 2 B 77 C U U G U U C A C A G G C SEQRES 3 B 77 U G A G A A A G U C C C U SEQRES 4 B 77 U U G A A C C U G A A C A SEQRES 5 B 77 G G G U A A U G C C U G C SEQRES 6 B 77 G C A G G G A G U G U C HET MG A 78 1 HET MG A 79 1 HET MG A 80 1 HET MG A 82 1 HET MG A 81 1 HET TPP A 83 26 HET MG B 78 1 HET MG B 79 1 HET MG B 80 1 HET MG B 81 1 HET MG B 82 1 HET TPP B 83 26 HETNAM MG MAGNESIUM ION HETNAM TPP THIAMINE DIPHOSPHATE FORMUL 3 MG 10(MG 2+) FORMUL 8 TPP 2(C12 H19 N4 O7 P2 S 1+) FORMUL 15 HOH *163(H2 O) LINK O6 G A 48 MG MG A 79 1555 1555 2.32 LINK OP1 C A 51 MG MG A 80 1555 1555 2.43 LINK OP2 A A 52 MG MG A 80 1555 1555 2.39 LINK MG MG A 78 O1A TPP A 83 1555 1555 1.95 LINK MG MG A 78 O3B TPP A 83 1555 1555 2.39 LINK MG MG A 78 O HOH A 89 1555 1555 2.16 LINK MG MG A 78 O HOH A 90 1555 1555 2.21 LINK MG MG A 78 O HOH A 91 1555 1555 2.19 LINK MG MG A 78 O HOH A 92 1555 1555 2.17 LINK MG MG A 79 O2B TPP A 83 1555 1555 2.01 LINK MG MG A 79 O HOH A 93 1555 1555 2.15 LINK MG MG A 79 O HOH A 94 1555 1555 2.13 LINK MG MG A 79 O HOH A 95 1555 1555 2.17 LINK MG MG A 80 O HOH A 96 1555 1555 2.24 LINK MG MG A 80 O HOH A 97 1555 1555 2.18 LINK MG MG A 80 O HOH A 98 1555 1555 2.14 LINK MG MG A 80 O HOH B 90 1555 1555 2.13 LINK MG MG A 81 O HOH A 99 1555 1555 2.20 LINK MG MG A 81 O HOH A 100 1555 1555 2.17 LINK MG MG A 81 O HOH A 101 1555 1555 2.17 LINK MG MG A 81 O HOH A 132 1555 1555 2.44 LINK MG MG A 82 O HOH A 85 1555 1555 2.20 LINK MG MG A 82 O HOH A 86 1555 1555 2.22 LINK MG MG A 82 O HOH A 87 1555 1555 2.20 LINK MG MG A 82 O HOH A 88 1555 1555 2.21 LINK O HOH A 84 MG MG B 79 1555 1555 2.13 LINK N7 A B 29 MG MG B 81 1555 1555 2.49 LINK O6 G B 48 MG MG B 78 1555 1555 2.41 LINK OP1 C B 51 MG MG B 79 1555 1555 2.22 LINK O6 G B 66 MG MG B 78 1555 1555 2.47 LINK OP2 C B 67 MG MG B 82 1555 1555 2.49 LINK MG MG B 78 O2B TPP B 83 1555 1555 1.97 LINK MG MG B 78 O HOH B 84 1555 1555 2.16 LINK MG MG B 78 O HOH B 85 1555 1555 2.19 LINK MG MG B 78 O HOH B 86 1555 1555 2.12 LINK MG MG B 79 O HOH B 87 1555 1555 2.18 LINK MG MG B 79 O HOH B 88 1555 1555 2.12 LINK MG MG B 79 O HOH B 89 1555 1555 2.18 LINK MG MG B 80 O2A TPP B 83 1555 1555 2.32 LINK MG MG B 80 O HOH B 91 1555 1555 2.13 LINK MG MG B 80 O HOH B 92 1555 1555 2.19 LINK MG MG B 80 O HOH B 93 1555 1555 2.21 LINK MG MG B 80 O HOH B 94 1555 1555 2.21 LINK MG MG B 82 O HOH B 95 1555 1555 2.12 LINK MG MG B 82 O HOH B 96 1555 1555 2.50 SITE 1 AC1 6 G B 48 G B 66 TPP B 83 HOH B 84 SITE 2 AC1 6 HOH B 85 HOH B 86 SITE 1 AC2 6 HOH A 84 C B 51 A B 52 HOH B 87 SITE 2 AC2 6 HOH B 88 HOH B 89 SITE 1 AC3 5 TPP A 83 HOH A 89 HOH A 90 HOH A 91 SITE 2 AC3 5 HOH A 92 SITE 1 AC4 6 G A 48 G A 66 TPP A 83 HOH A 93 SITE 2 AC4 6 HOH A 94 HOH A 95 SITE 1 AC5 6 C A 51 A A 52 HOH A 96 HOH A 97 SITE 2 AC5 6 HOH A 98 HOH B 90 SITE 1 AC6 6 U B 63 TPP B 83 HOH B 91 HOH B 92 SITE 2 AC6 6 HOH B 93 HOH B 94 SITE 1 AC7 7 G A 42 C A 65 C A 67 HOH A 85 SITE 2 AC7 7 HOH A 86 HOH A 87 HOH A 88 SITE 1 AC8 6 A A 29 HOH A 99 HOH A 100 HOH A 101 SITE 2 AC8 6 HOH A 132 HOH A 158 SITE 1 AC9 3 A B 29 HOH B 102 HOH B 104 SITE 1 BC1 3 C B 67 HOH B 95 HOH B 96 SITE 1 BC2 17 G A 11 G A 28 G A 30 A A 31 SITE 2 BC2 17 C A 45 G A 60 C A 61 C A 65 SITE 3 BC2 17 G A 66 MG A 78 MG A 79 HOH A 89 SITE 4 BC2 17 HOH A 91 HOH A 92 HOH A 93 HOH A 95 SITE 5 BC2 17 HOH A 119 SITE 1 BC3 18 G B 11 U B 12 G B 28 G B 30 SITE 2 BC3 18 A B 31 C B 45 G B 60 C B 61 SITE 3 BC3 18 C B 65 G B 66 MG B 78 MG B 80 SITE 4 BC3 18 HOH B 84 HOH B 85 HOH B 93 HOH B 94 SITE 5 BC3 18 HOH B 98 HOH B 112 CRYST1 76.048 111.022 55.733 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013150 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009007 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017943 0.00000