HEADER UNKNOWN FUNCTION 09-MAY-08 3D33 TITLE CRYSTAL STRUCTURE OF A DUF3244 FAMILY PROTEIN WITH AN IMMUNOGLOBULIN- TITLE 2 LIKE BETA-SANDWICH FOLD (BVU_0276) FROM BACTEROIDES VULGATUS ATCC TITLE 3 8482 AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOMAIN OF UNKNOWN FUNCTION WITH AN IMMUNOGLOBULIN-LIKE COMPND 3 BETA-SANDWICH FOLD; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS ATCC 8482; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 GENE: YP_001297618.1, BVU_0276; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3D33 1 SEQADV REVDAT 6 24-JUL-19 3D33 1 REMARK LINK REVDAT 5 25-OCT-17 3D33 1 REMARK REVDAT 4 13-JUL-11 3D33 1 VERSN REVDAT 3 23-MAR-11 3D33 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3D33 1 VERSN REVDAT 1 27-MAY-08 3D33 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF DOMAIN OF UNKNOWN FUNCTION WITH AN JRNL TITL 2 IMMUNOGLOBULIN-LIKE BETA-SANDWICH FOLD (YP_001297618.1) FROM JRNL TITL 3 BACTEROIDES VULGATUS ATCC 8482 AT 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 25099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1283 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1685 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.951 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1532 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1019 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2099 ; 1.494 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2516 ; 0.845 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 205 ; 6.224 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;41.188 ;25.156 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 259 ;12.758 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;16.805 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 244 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1708 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 288 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 235 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1061 ; 0.210 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 712 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 876 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 191 ; 0.116 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.134 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 21 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1033 ; 1.914 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 391 ; 0.552 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1579 ; 2.717 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 625 ; 4.374 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 509 ; 5.982 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 34 A 134 5 REMARK 3 1 B 34 B 134 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 553 ; 0.120 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 664 ; 0.360 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 553 ; 0.580 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 664 ; 1.150 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2825 11.7246 10.8684 REMARK 3 T TENSOR REMARK 3 T11: -0.0637 T22: -0.0470 REMARK 3 T33: -0.0435 T12: 0.0074 REMARK 3 T13: -0.0065 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.1627 L22: 1.7736 REMARK 3 L33: 2.3912 L12: 0.3124 REMARK 3 L13: 0.0569 L23: 0.0921 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.0750 S13: 0.0047 REMARK 3 S21: 0.0108 S22: -0.0250 S23: 0.0761 REMARK 3 S31: -0.0036 S32: 0.0341 S33: 0.0100 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 134 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6125 22.0998 -9.3901 REMARK 3 T TENSOR REMARK 3 T11: -0.0578 T22: -0.0388 REMARK 3 T33: -0.0292 T12: -0.0095 REMARK 3 T13: 0.0037 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.2694 L22: 1.6648 REMARK 3 L33: 1.9261 L12: -0.6028 REMARK 3 L13: -0.4287 L23: -0.1177 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.0804 S13: 0.0129 REMARK 3 S21: -0.0030 S22: -0.0244 S23: 0.0670 REMARK 3 S31: 0.0434 S32: 0.0573 S33: 0.0278 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. THE FOLLOWING REGIONS ARE DISORDERED: A/B0, A/B28-33, REMARK 3 A47-53, B46-53. REMARK 4 REMARK 4 3D33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047530. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25116 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 28.677 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.87100 REMARK 200 R SYM FOR SHELL (I) : 0.87100 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M MGFORMATE, 20.0000% PEG-3350, REMARK 280 NO BUFFER PH 5.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.58950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY REMARK 300 (ANSEC) SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 27 REMARK 465 ALA A 28 REMARK 465 ASN A 29 REMARK 465 THR A 30 REMARK 465 THR A 31 REMARK 465 GLU A 32 REMARK 465 THR A 33 REMARK 465 PRO A 47 REMARK 465 ILE A 48 REMARK 465 ARG A 49 REMARK 465 SER A 50 REMARK 465 ALA A 51 REMARK 465 ALA A 52 REMARK 465 THR A 53 REMARK 465 GLY B 27 REMARK 465 ALA B 28 REMARK 465 ASN B 29 REMARK 465 THR B 30 REMARK 465 THR B 31 REMARK 465 GLU B 32 REMARK 465 THR B 33 REMARK 465 ASP B 46 REMARK 465 PRO B 47 REMARK 465 ILE B 48 REMARK 465 ARG B 49 REMARK 465 SER B 50 REMARK 465 ALA B 51 REMARK 465 ALA B 52 REMARK 465 THR B 53 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CD CE NZ REMARK 470 ASN A 54 CG OD1 ND2 REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 GLU B 39 CD OE1 OE2 REMARK 470 ASN B 54 CG OD1 ND2 REMARK 470 TYR B 64 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 5.85 -159.09 REMARK 500 ASP B 74 6.03 -153.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390198 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED REMARK 999 CONSTRUCT CONTAINS RESIDUES 28-134 OF THE FULL LENGTH PROTEIN. THIS REMARK 999 REMOVED THE PUTATIVE SIGNAL PEPTIDE WHOSE PREDICTED CLEAVAGE SITE REMARK 999 IS BETWEEN RESIDUES 28-29. DBREF 3D33 A 28 134 UNP A6KX32 A6KX32_BACV8 28 134 DBREF 3D33 B 28 134 UNP A6KX32 A6KX32_BACV8 28 134 SEQADV 3D33 GLY A 27 UNP A6KX32 EXPRESSION TAG SEQADV 3D33 GLY B 27 UNP A6KX32 EXPRESSION TAG SEQRES 1 A 108 GLY ALA ASN THR THR GLU THR PRO VAL LYS ASP VAL GLU SEQRES 2 A 108 LEU ASP GLY ARG TRP ASP ASP PRO ILE ARG SER ALA ALA SEQRES 3 A 108 THR ASN CYS PRO ILE THR VAL PHE THR ASP GLY TYR LEU SEQRES 4 A 108 LEU THR LEU LYS ASN ALA SER PRO ASP ARG ASP MSE THR SEQRES 5 A 108 ILE ARG ILE THR ASP MSE ALA LYS GLY GLY VAL VAL TYR SEQRES 6 A 108 GLU ASN ASP ILE PRO GLU VAL GLN SER ALA TYR ILE THR SEQRES 7 A 108 ILE SER ILE ALA ASN PHE PRO ALA GLU GLU TYR LYS LEU SEQRES 8 A 108 GLU ILE THR GLY THR PRO SER GLY HIS LEU THR GLY TYR SEQRES 9 A 108 PHE THR LYS GLU SEQRES 1 B 108 GLY ALA ASN THR THR GLU THR PRO VAL LYS ASP VAL GLU SEQRES 2 B 108 LEU ASP GLY ARG TRP ASP ASP PRO ILE ARG SER ALA ALA SEQRES 3 B 108 THR ASN CYS PRO ILE THR VAL PHE THR ASP GLY TYR LEU SEQRES 4 B 108 LEU THR LEU LYS ASN ALA SER PRO ASP ARG ASP MSE THR SEQRES 5 B 108 ILE ARG ILE THR ASP MSE ALA LYS GLY GLY VAL VAL TYR SEQRES 6 B 108 GLU ASN ASP ILE PRO GLU VAL GLN SER ALA TYR ILE THR SEQRES 7 B 108 ILE SER ILE ALA ASN PHE PRO ALA GLU GLU TYR LYS LEU SEQRES 8 B 108 GLU ILE THR GLY THR PRO SER GLY HIS LEU THR GLY TYR SEQRES 9 B 108 PHE THR LYS GLU MODRES 3D33 MSE A 77 MET SELENOMETHIONINE MODRES 3D33 MSE A 84 MET SELENOMETHIONINE MODRES 3D33 MSE B 77 MET SELENOMETHIONINE MODRES 3D33 MSE B 84 MET SELENOMETHIONINE HET MSE A 77 13 HET MSE A 84 13 HET MSE B 77 13 HET MSE B 84 13 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *283(H2 O) HELIX 1 1 PRO A 96 SER A 100 5 5 HELIX 2 2 PRO B 96 SER B 100 5 5 SHEET 1 A 4 LYS A 36 ASP A 37 0 SHEET 2 A 4 ILE A 57 ASP A 62 -1 O THR A 61 N LYS A 36 SHEET 3 A 4 LEU A 65 ASN A 70 -1 O THR A 67 N PHE A 60 SHEET 4 A 4 TYR A 102 SER A 106 -1 O ILE A 105 N LEU A 66 SHEET 1 B 5 ASP A 41 ARG A 43 0 SHEET 2 B 5 HIS A 126 LYS A 133 -1 O HIS A 126 N ARG A 43 SHEET 3 B 5 GLU A 113 THR A 122 -1 N LEU A 117 O GLY A 129 SHEET 4 B 5 ASP A 76 ASP A 83 -1 N THR A 82 O LYS A 116 SHEET 5 B 5 VAL A 89 ILE A 95 -1 O ILE A 95 N MSE A 77 SHEET 1 C 4 LYS B 36 VAL B 38 0 SHEET 2 C 4 ILE B 57 ASP B 62 -1 O VAL B 59 N VAL B 38 SHEET 3 C 4 LEU B 65 ASN B 70 -1 O THR B 67 N PHE B 60 SHEET 4 C 4 TYR B 102 SER B 106 -1 O ILE B 105 N LEU B 66 SHEET 1 D 5 ASP B 41 ARG B 43 0 SHEET 2 D 5 HIS B 126 LYS B 133 -1 O HIS B 126 N ARG B 43 SHEET 3 D 5 GLU B 113 THR B 122 -1 N TYR B 115 O PHE B 131 SHEET 4 D 5 ASP B 76 ASP B 83 -1 N THR B 82 O LYS B 116 SHEET 5 D 5 VAL B 89 ILE B 95 -1 O TYR B 91 N ILE B 81 LINK C ASP A 76 N MSE A 77 1555 1555 1.34 LINK C MSE A 77 N THR A 78 1555 1555 1.32 LINK C ASP A 83 N MSE A 84 1555 1555 1.32 LINK C MSE A 84 N ALA A 85 1555 1555 1.33 LINK C ASP B 76 N MSE B 77 1555 1555 1.33 LINK C MSE B 77 N THR B 78 1555 1555 1.32 LINK C ASP B 83 N MSE B 84 1555 1555 1.33 LINK C MSE B 84 N ALA B 85 1555 1555 1.33 CISPEP 1 THR A 122 PRO A 123 0 3.66 CISPEP 2 THR B 122 PRO B 123 0 0.49 CRYST1 44.562 55.179 47.116 90.00 94.31 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022441 0.000000 0.001690 0.00000 SCALE2 0.000000 0.018123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021284 0.00000