data_3D3M # _entry.id 3D3M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3D3M pdb_00003d3m 10.2210/pdb3d3m/pdb RCSB RCSB047549 ? ? WWPDB D_1000047549 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-10-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 3D3M _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-05-12 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dym, O.' 1 'Israel Structural Proteomics Center (ISPC)' 2 # _citation.id primary _citation.title 'The crystal structure of the C-terminal DAP5/p97 domain sheds light on the molecular basis for its processing by caspase cleavage.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 383 _citation.page_first 539 _citation.page_last 548 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18722383 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2008.08.013 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liberman, N.' 1 ? primary 'Dym, O.' 2 ? primary 'Unger, T.' 3 ? primary 'Albeck, S.' 4 ? primary 'Peleg, Y.' 5 ? primary 'Jacobovitch, Y.' 6 ? primary 'Branzburg, A.' 7 ? primary 'Eisenstein, M.' 8 ? primary 'Marash, L.' 9 ? primary 'Kimchi, A.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Eukaryotic translation initiation factor 4 gamma 2' 19657.566 2 ? ? 'C terminal Domain' ? 2 water nat water 18.015 65 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Death-associated protein 5, DAP-5, eIF-4-gamma 2, eIF-4G 2, eIF4G 2, p97' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLL LSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ WLTWLETA ; _entity_poly.pdbx_seq_one_letter_code_can ;LLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLL LSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ WLTWLETA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 LEU n 1 3 LYS n 1 4 LEU n 1 5 GLU n 1 6 LYS n 1 7 GLU n 1 8 LEU n 1 9 LEU n 1 10 LYS n 1 11 GLN n 1 12 ILE n 1 13 LYS n 1 14 LEU n 1 15 ASP n 1 16 PRO n 1 17 SER n 1 18 PRO n 1 19 GLN n 1 20 THR n 1 21 ILE n 1 22 TYR n 1 23 LYS n 1 24 TRP n 1 25 ILE n 1 26 LYS n 1 27 ASP n 1 28 ASN n 1 29 ILE n 1 30 SER n 1 31 PRO n 1 32 LYS n 1 33 LEU n 1 34 HIS n 1 35 VAL n 1 36 ASP n 1 37 LYS n 1 38 GLY n 1 39 PHE n 1 40 VAL n 1 41 ASN n 1 42 ILE n 1 43 LEU n 1 44 MET n 1 45 THR n 1 46 SER n 1 47 PHE n 1 48 LEU n 1 49 GLN n 1 50 TYR n 1 51 ILE n 1 52 SER n 1 53 SER n 1 54 GLU n 1 55 VAL n 1 56 ASN n 1 57 PRO n 1 58 PRO n 1 59 SER n 1 60 ASP n 1 61 GLU n 1 62 THR n 1 63 ASP n 1 64 SER n 1 65 SER n 1 66 SER n 1 67 ALA n 1 68 PRO n 1 69 SER n 1 70 LYS n 1 71 GLU n 1 72 GLN n 1 73 LEU n 1 74 GLU n 1 75 GLN n 1 76 GLU n 1 77 LYS n 1 78 GLN n 1 79 LEU n 1 80 LEU n 1 81 LEU n 1 82 SER n 1 83 PHE n 1 84 LYS n 1 85 PRO n 1 86 VAL n 1 87 MET n 1 88 GLN n 1 89 LYS n 1 90 PHE n 1 91 LEU n 1 92 HIS n 1 93 ASP n 1 94 HIS n 1 95 VAL n 1 96 ASP n 1 97 LEU n 1 98 GLN n 1 99 VAL n 1 100 SER n 1 101 ALA n 1 102 LEU n 1 103 TYR n 1 104 ALA n 1 105 LEU n 1 106 GLN n 1 107 VAL n 1 108 HIS n 1 109 CYS n 1 110 TYR n 1 111 ASN n 1 112 SER n 1 113 ASN n 1 114 PHE n 1 115 PRO n 1 116 LYS n 1 117 GLY n 1 118 MET n 1 119 LEU n 1 120 LEU n 1 121 ARG n 1 122 PHE n 1 123 PHE n 1 124 VAL n 1 125 HIS n 1 126 PHE n 1 127 TYR n 1 128 ASP n 1 129 MET n 1 130 GLU n 1 131 ILE n 1 132 ILE n 1 133 GLU n 1 134 GLU n 1 135 GLU n 1 136 ALA n 1 137 PHE n 1 138 LEU n 1 139 ALA n 1 140 TRP n 1 141 LYS n 1 142 GLU n 1 143 ASP n 1 144 ILE n 1 145 THR n 1 146 GLN n 1 147 GLU n 1 148 PHE n 1 149 PRO n 1 150 GLY n 1 151 LYS n 1 152 GLY n 1 153 LYS n 1 154 ALA n 1 155 LEU n 1 156 PHE n 1 157 GLN n 1 158 VAL n 1 159 ASN n 1 160 GLN n 1 161 TRP n 1 162 LEU n 1 163 THR n 1 164 TRP n 1 165 LEU n 1 166 GLU n 1 167 THR n 1 168 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name man _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'EIF4G2, DAP5, OK/SW-cl.75' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 730 730 LEU LEU A . n A 1 2 LEU 2 731 731 LEU LEU A . n A 1 3 LYS 3 732 732 LYS LYS A . n A 1 4 LEU 4 733 733 LEU LEU A . n A 1 5 GLU 5 734 734 GLU GLU A . n A 1 6 LYS 6 735 735 LYS LYS A . n A 1 7 GLU 7 736 736 GLU GLU A . n A 1 8 LEU 8 737 737 LEU LEU A . n A 1 9 LEU 9 738 738 LEU LEU A . n A 1 10 LYS 10 739 739 LYS LYS A . n A 1 11 GLN 11 740 740 GLN GLN A . n A 1 12 ILE 12 741 741 ILE ILE A . n A 1 13 LYS 13 742 742 LYS LYS A . n A 1 14 LEU 14 743 743 LEU LEU A . n A 1 15 ASP 15 744 744 ASP ASP A . n A 1 16 PRO 16 745 745 PRO PRO A . n A 1 17 SER 17 746 746 SER SER A . n A 1 18 PRO 18 747 747 PRO PRO A . n A 1 19 GLN 19 748 748 GLN GLN A . n A 1 20 THR 20 749 749 THR THR A . n A 1 21 ILE 21 750 750 ILE ILE A . n A 1 22 TYR 22 751 751 TYR TYR A . n A 1 23 LYS 23 752 752 LYS LYS A . n A 1 24 TRP 24 753 753 TRP TRP A . n A 1 25 ILE 25 754 754 ILE ILE A . n A 1 26 LYS 26 755 755 LYS LYS A . n A 1 27 ASP 27 756 756 ASP ASP A . n A 1 28 ASN 28 757 757 ASN ASN A . n A 1 29 ILE 29 758 758 ILE ILE A . n A 1 30 SER 30 759 759 SER SER A . n A 1 31 PRO 31 760 760 PRO PRO A . n A 1 32 LYS 32 761 761 LYS LYS A . n A 1 33 LEU 33 762 762 LEU LEU A . n A 1 34 HIS 34 763 763 HIS HIS A . n A 1 35 VAL 35 764 764 VAL VAL A . n A 1 36 ASP 36 765 765 ASP ASP A . n A 1 37 LYS 37 766 766 LYS LYS A . n A 1 38 GLY 38 767 767 GLY GLY A . n A 1 39 PHE 39 768 768 PHE PHE A . n A 1 40 VAL 40 769 769 VAL VAL A . n A 1 41 ASN 41 770 770 ASN ASN A . n A 1 42 ILE 42 771 771 ILE ILE A . n A 1 43 LEU 43 772 772 LEU LEU A . n A 1 44 MET 44 773 773 MET MET A . n A 1 45 THR 45 774 774 THR THR A . n A 1 46 SER 46 775 775 SER SER A . n A 1 47 PHE 47 776 776 PHE PHE A . n A 1 48 LEU 48 777 777 LEU LEU A . n A 1 49 GLN 49 778 778 GLN GLN A . n A 1 50 TYR 50 779 779 TYR TYR A . n A 1 51 ILE 51 780 780 ILE ILE A . n A 1 52 SER 52 781 781 SER SER A . n A 1 53 SER 53 782 782 SER SER A . n A 1 54 GLU 54 783 783 GLU GLU A . n A 1 55 VAL 55 784 784 VAL VAL A . n A 1 56 ASN 56 785 785 ASN ASN A . n A 1 57 PRO 57 786 786 PRO PRO A . n A 1 58 PRO 58 787 787 PRO PRO A . n A 1 59 SER 59 788 788 SER SER A . n A 1 60 ASP 60 789 ? ? ? A . n A 1 61 GLU 61 790 ? ? ? A . n A 1 62 THR 62 791 ? ? ? A . n A 1 63 ASP 63 792 ? ? ? A . n A 1 64 SER 64 793 ? ? ? A . n A 1 65 SER 65 794 ? ? ? A . n A 1 66 SER 66 795 ? ? ? A . n A 1 67 ALA 67 796 796 ALA ALA A . n A 1 68 PRO 68 797 797 PRO PRO A . n A 1 69 SER 69 798 798 SER SER A . n A 1 70 LYS 70 799 799 LYS LYS A . n A 1 71 GLU 71 800 800 GLU GLU A . n A 1 72 GLN 72 801 801 GLN GLN A . n A 1 73 LEU 73 802 802 LEU LEU A . n A 1 74 GLU 74 803 803 GLU GLU A . n A 1 75 GLN 75 804 804 GLN GLN A . n A 1 76 GLU 76 805 805 GLU GLU A . n A 1 77 LYS 77 806 806 LYS LYS A . n A 1 78 GLN 78 807 807 GLN GLN A . n A 1 79 LEU 79 808 808 LEU LEU A . n A 1 80 LEU 80 809 809 LEU LEU A . n A 1 81 LEU 81 810 810 LEU LEU A . n A 1 82 SER 82 811 811 SER SER A . n A 1 83 PHE 83 812 812 PHE PHE A . n A 1 84 LYS 84 813 813 LYS LYS A . n A 1 85 PRO 85 814 814 PRO PRO A . n A 1 86 VAL 86 815 815 VAL VAL A . n A 1 87 MET 87 816 816 MET MET A . n A 1 88 GLN 88 817 817 GLN GLN A . n A 1 89 LYS 89 818 818 LYS LYS A . n A 1 90 PHE 90 819 819 PHE PHE A . n A 1 91 LEU 91 820 820 LEU LEU A . n A 1 92 HIS 92 821 821 HIS HIS A . n A 1 93 ASP 93 822 822 ASP ASP A . n A 1 94 HIS 94 823 823 HIS HIS A . n A 1 95 VAL 95 824 824 VAL VAL A . n A 1 96 ASP 96 825 825 ASP ASP A . n A 1 97 LEU 97 826 826 LEU LEU A . n A 1 98 GLN 98 827 827 GLN GLN A . n A 1 99 VAL 99 828 828 VAL VAL A . n A 1 100 SER 100 829 829 SER SER A . n A 1 101 ALA 101 830 830 ALA ALA A . n A 1 102 LEU 102 831 831 LEU LEU A . n A 1 103 TYR 103 832 832 TYR TYR A . n A 1 104 ALA 104 833 833 ALA ALA A . n A 1 105 LEU 105 834 834 LEU LEU A . n A 1 106 GLN 106 835 835 GLN GLN A . n A 1 107 VAL 107 836 836 VAL VAL A . n A 1 108 HIS 108 837 837 HIS HIS A . n A 1 109 CYS 109 838 838 CYS CYS A . n A 1 110 TYR 110 839 839 TYR TYR A . n A 1 111 ASN 111 840 840 ASN ASN A . n A 1 112 SER 112 841 841 SER SER A . n A 1 113 ASN 113 842 842 ASN ASN A . n A 1 114 PHE 114 843 843 PHE PHE A . n A 1 115 PRO 115 844 844 PRO PRO A . n A 1 116 LYS 116 845 845 LYS LYS A . n A 1 117 GLY 117 846 846 GLY GLY A . n A 1 118 MET 118 847 847 MET MET A . n A 1 119 LEU 119 848 848 LEU LEU A . n A 1 120 LEU 120 849 849 LEU LEU A . n A 1 121 ARG 121 850 850 ARG ARG A . n A 1 122 PHE 122 851 851 PHE PHE A . n A 1 123 PHE 123 852 852 PHE PHE A . n A 1 124 VAL 124 853 853 VAL VAL A . n A 1 125 HIS 125 854 854 HIS HIS A . n A 1 126 PHE 126 855 855 PHE PHE A . n A 1 127 TYR 127 856 856 TYR TYR A . n A 1 128 ASP 128 857 857 ASP ASP A . n A 1 129 MET 129 858 858 MET MET A . n A 1 130 GLU 130 859 859 GLU GLU A . n A 1 131 ILE 131 860 860 ILE ILE A . n A 1 132 ILE 132 861 861 ILE ILE A . n A 1 133 GLU 133 862 862 GLU GLU A . n A 1 134 GLU 134 863 863 GLU GLU A . n A 1 135 GLU 135 864 864 GLU GLU A . n A 1 136 ALA 136 865 865 ALA ALA A . n A 1 137 PHE 137 866 866 PHE PHE A . n A 1 138 LEU 138 867 867 LEU LEU A . n A 1 139 ALA 139 868 868 ALA ALA A . n A 1 140 TRP 140 869 869 TRP TRP A . n A 1 141 LYS 141 870 870 LYS LYS A . n A 1 142 GLU 142 871 871 GLU GLU A . n A 1 143 ASP 143 872 872 ASP ASP A . n A 1 144 ILE 144 873 873 ILE ILE A . n A 1 145 THR 145 874 874 THR THR A . n A 1 146 GLN 146 875 875 GLN GLN A . n A 1 147 GLU 147 876 876 GLU GLU A . n A 1 148 PHE 148 877 877 PHE PHE A . n A 1 149 PRO 149 878 878 PRO PRO A . n A 1 150 GLY 150 879 879 GLY GLY A . n A 1 151 LYS 151 880 880 LYS LYS A . n A 1 152 GLY 152 881 881 GLY GLY A . n A 1 153 LYS 153 882 882 LYS LYS A . n A 1 154 ALA 154 883 883 ALA ALA A . n A 1 155 LEU 155 884 884 LEU LEU A . n A 1 156 PHE 156 885 885 PHE PHE A . n A 1 157 GLN 157 886 886 GLN GLN A . n A 1 158 VAL 158 887 887 VAL VAL A . n A 1 159 ASN 159 888 888 ASN ASN A . n A 1 160 GLN 160 889 889 GLN GLN A . n A 1 161 TRP 161 890 890 TRP TRP A . n A 1 162 LEU 162 891 891 LEU LEU A . n A 1 163 THR 163 892 892 THR THR A . n A 1 164 TRP 164 893 893 TRP TRP A . n A 1 165 LEU 165 894 894 LEU LEU A . n A 1 166 GLU 166 895 895 GLU GLU A . n A 1 167 THR 167 896 896 THR THR A . n A 1 168 ALA 168 897 897 ALA ALA A . n B 1 1 LEU 1 730 730 LEU LEU B . n B 1 2 LEU 2 731 731 LEU LEU B . n B 1 3 LYS 3 732 732 LYS LYS B . n B 1 4 LEU 4 733 733 LEU LEU B . n B 1 5 GLU 5 734 734 GLU GLU B . n B 1 6 LYS 6 735 735 LYS LYS B . n B 1 7 GLU 7 736 736 GLU GLU B . n B 1 8 LEU 8 737 737 LEU LEU B . n B 1 9 LEU 9 738 738 LEU LEU B . n B 1 10 LYS 10 739 739 LYS LYS B . n B 1 11 GLN 11 740 740 GLN GLN B . n B 1 12 ILE 12 741 741 ILE ILE B . n B 1 13 LYS 13 742 742 LYS LYS B . n B 1 14 LEU 14 743 743 LEU LEU B . n B 1 15 ASP 15 744 744 ASP ASP B . n B 1 16 PRO 16 745 745 PRO PRO B . n B 1 17 SER 17 746 746 SER SER B . n B 1 18 PRO 18 747 747 PRO PRO B . n B 1 19 GLN 19 748 748 GLN GLN B . n B 1 20 THR 20 749 749 THR THR B . n B 1 21 ILE 21 750 750 ILE ILE B . n B 1 22 TYR 22 751 751 TYR TYR B . n B 1 23 LYS 23 752 752 LYS LYS B . n B 1 24 TRP 24 753 753 TRP TRP B . n B 1 25 ILE 25 754 754 ILE ILE B . n B 1 26 LYS 26 755 755 LYS LYS B . n B 1 27 ASP 27 756 756 ASP ASP B . n B 1 28 ASN 28 757 757 ASN ASN B . n B 1 29 ILE 29 758 758 ILE ILE B . n B 1 30 SER 30 759 759 SER SER B . n B 1 31 PRO 31 760 760 PRO PRO B . n B 1 32 LYS 32 761 761 LYS LYS B . n B 1 33 LEU 33 762 762 LEU LEU B . n B 1 34 HIS 34 763 763 HIS HIS B . n B 1 35 VAL 35 764 764 VAL VAL B . n B 1 36 ASP 36 765 765 ASP ASP B . n B 1 37 LYS 37 766 766 LYS LYS B . n B 1 38 GLY 38 767 767 GLY GLY B . n B 1 39 PHE 39 768 768 PHE PHE B . n B 1 40 VAL 40 769 769 VAL VAL B . n B 1 41 ASN 41 770 770 ASN ASN B . n B 1 42 ILE 42 771 771 ILE ILE B . n B 1 43 LEU 43 772 772 LEU LEU B . n B 1 44 MET 44 773 773 MET MET B . n B 1 45 THR 45 774 774 THR THR B . n B 1 46 SER 46 775 775 SER SER B . n B 1 47 PHE 47 776 776 PHE PHE B . n B 1 48 LEU 48 777 777 LEU LEU B . n B 1 49 GLN 49 778 778 GLN GLN B . n B 1 50 TYR 50 779 779 TYR TYR B . n B 1 51 ILE 51 780 780 ILE ILE B . n B 1 52 SER 52 781 781 SER SER B . n B 1 53 SER 53 782 782 SER SER B . n B 1 54 GLU 54 783 783 GLU GLU B . n B 1 55 VAL 55 784 784 VAL VAL B . n B 1 56 ASN 56 785 785 ASN ASN B . n B 1 57 PRO 57 786 786 PRO PRO B . n B 1 58 PRO 58 787 ? ? ? B . n B 1 59 SER 59 788 ? ? ? B . n B 1 60 ASP 60 789 ? ? ? B . n B 1 61 GLU 61 790 ? ? ? B . n B 1 62 THR 62 791 ? ? ? B . n B 1 63 ASP 63 792 ? ? ? B . n B 1 64 SER 64 793 ? ? ? B . n B 1 65 SER 65 794 ? ? ? B . n B 1 66 SER 66 795 ? ? ? B . n B 1 67 ALA 67 796 796 ALA ALA B . n B 1 68 PRO 68 797 797 PRO PRO B . n B 1 69 SER 69 798 798 SER SER B . n B 1 70 LYS 70 799 799 LYS LYS B . n B 1 71 GLU 71 800 800 GLU GLU B . n B 1 72 GLN 72 801 801 GLN GLN B . n B 1 73 LEU 73 802 802 LEU LEU B . n B 1 74 GLU 74 803 803 GLU GLU B . n B 1 75 GLN 75 804 804 GLN GLN B . n B 1 76 GLU 76 805 805 GLU GLU B . n B 1 77 LYS 77 806 806 LYS LYS B . n B 1 78 GLN 78 807 807 GLN GLN B . n B 1 79 LEU 79 808 808 LEU LEU B . n B 1 80 LEU 80 809 809 LEU LEU B . n B 1 81 LEU 81 810 810 LEU LEU B . n B 1 82 SER 82 811 811 SER SER B . n B 1 83 PHE 83 812 812 PHE PHE B . n B 1 84 LYS 84 813 813 LYS LYS B . n B 1 85 PRO 85 814 814 PRO PRO B . n B 1 86 VAL 86 815 815 VAL VAL B . n B 1 87 MET 87 816 816 MET MET B . n B 1 88 GLN 88 817 817 GLN GLN B . n B 1 89 LYS 89 818 818 LYS LYS B . n B 1 90 PHE 90 819 819 PHE PHE B . n B 1 91 LEU 91 820 820 LEU LEU B . n B 1 92 HIS 92 821 821 HIS HIS B . n B 1 93 ASP 93 822 822 ASP ASP B . n B 1 94 HIS 94 823 823 HIS HIS B . n B 1 95 VAL 95 824 824 VAL VAL B . n B 1 96 ASP 96 825 825 ASP ASP B . n B 1 97 LEU 97 826 826 LEU LEU B . n B 1 98 GLN 98 827 827 GLN GLN B . n B 1 99 VAL 99 828 828 VAL VAL B . n B 1 100 SER 100 829 829 SER SER B . n B 1 101 ALA 101 830 830 ALA ALA B . n B 1 102 LEU 102 831 831 LEU LEU B . n B 1 103 TYR 103 832 832 TYR TYR B . n B 1 104 ALA 104 833 833 ALA ALA B . n B 1 105 LEU 105 834 834 LEU LEU B . n B 1 106 GLN 106 835 835 GLN GLN B . n B 1 107 VAL 107 836 836 VAL VAL B . n B 1 108 HIS 108 837 837 HIS HIS B . n B 1 109 CYS 109 838 838 CYS CYS B . n B 1 110 TYR 110 839 839 TYR TYR B . n B 1 111 ASN 111 840 840 ASN ASN B . n B 1 112 SER 112 841 841 SER SER B . n B 1 113 ASN 113 842 842 ASN ASN B . n B 1 114 PHE 114 843 843 PHE PHE B . n B 1 115 PRO 115 844 844 PRO PRO B . n B 1 116 LYS 116 845 845 LYS LYS B . n B 1 117 GLY 117 846 846 GLY GLY B . n B 1 118 MET 118 847 847 MET MET B . n B 1 119 LEU 119 848 848 LEU LEU B . n B 1 120 LEU 120 849 849 LEU LEU B . n B 1 121 ARG 121 850 850 ARG ARG B . n B 1 122 PHE 122 851 851 PHE PHE B . n B 1 123 PHE 123 852 852 PHE PHE B . n B 1 124 VAL 124 853 853 VAL VAL B . n B 1 125 HIS 125 854 854 HIS HIS B . n B 1 126 PHE 126 855 855 PHE PHE B . n B 1 127 TYR 127 856 856 TYR TYR B . n B 1 128 ASP 128 857 857 ASP ASP B . n B 1 129 MET 129 858 858 MET MET B . n B 1 130 GLU 130 859 859 GLU GLU B . n B 1 131 ILE 131 860 860 ILE ILE B . n B 1 132 ILE 132 861 861 ILE ILE B . n B 1 133 GLU 133 862 862 GLU GLU B . n B 1 134 GLU 134 863 863 GLU GLU B . n B 1 135 GLU 135 864 864 GLU GLU B . n B 1 136 ALA 136 865 865 ALA ALA B . n B 1 137 PHE 137 866 866 PHE PHE B . n B 1 138 LEU 138 867 867 LEU LEU B . n B 1 139 ALA 139 868 868 ALA ALA B . n B 1 140 TRP 140 869 869 TRP TRP B . n B 1 141 LYS 141 870 870 LYS LYS B . n B 1 142 GLU 142 871 871 GLU GLU B . n B 1 143 ASP 143 872 872 ASP ASP B . n B 1 144 ILE 144 873 873 ILE ILE B . n B 1 145 THR 145 874 874 THR THR B . n B 1 146 GLN 146 875 875 GLN GLN B . n B 1 147 GLU 147 876 876 GLU GLU B . n B 1 148 PHE 148 877 877 PHE PHE B . n B 1 149 PRO 149 878 878 PRO PRO B . n B 1 150 GLY 150 879 879 GLY GLY B . n B 1 151 LYS 151 880 880 LYS LYS B . n B 1 152 GLY 152 881 881 GLY GLY B . n B 1 153 LYS 153 882 882 LYS LYS B . n B 1 154 ALA 154 883 883 ALA ALA B . n B 1 155 LEU 155 884 884 LEU LEU B . n B 1 156 PHE 156 885 885 PHE PHE B . n B 1 157 GLN 157 886 886 GLN GLN B . n B 1 158 VAL 158 887 887 VAL VAL B . n B 1 159 ASN 159 888 888 ASN ASN B . n B 1 160 GLN 160 889 889 GLN GLN B . n B 1 161 TRP 161 890 890 TRP TRP B . n B 1 162 LEU 162 891 891 LEU LEU B . n B 1 163 THR 163 892 892 THR THR B . n B 1 164 TRP 164 893 893 TRP TRP B . n B 1 165 LEU 165 894 894 LEU LEU B . n B 1 166 GLU 166 895 895 GLU GLU B . n B 1 167 THR 167 896 ? ? ? B . n B 1 168 ALA 168 897 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 1 1 HOH HOH A . C 2 HOH 2 2 2 HOH HOH A . C 2 HOH 3 3 3 HOH HOH A . C 2 HOH 4 4 4 HOH HOH A . C 2 HOH 5 5 5 HOH HOH A . C 2 HOH 6 7 7 HOH HOH A . C 2 HOH 7 8 8 HOH HOH A . C 2 HOH 8 10 10 HOH HOH A . C 2 HOH 9 11 11 HOH HOH A . C 2 HOH 10 13 13 HOH HOH A . C 2 HOH 11 15 15 HOH HOH A . C 2 HOH 12 16 16 HOH HOH A . C 2 HOH 13 17 17 HOH HOH A . C 2 HOH 14 18 18 HOH HOH A . C 2 HOH 15 21 21 HOH HOH A . C 2 HOH 16 23 23 HOH HOH A . C 2 HOH 17 26 26 HOH HOH A . C 2 HOH 18 30 30 HOH HOH A . C 2 HOH 19 33 33 HOH HOH A . C 2 HOH 20 35 35 HOH HOH A . C 2 HOH 21 36 36 HOH HOH A . C 2 HOH 22 37 37 HOH HOH A . C 2 HOH 23 39 39 HOH HOH A . C 2 HOH 24 42 42 HOH HOH A . C 2 HOH 25 43 43 HOH HOH A . C 2 HOH 26 56 56 HOH HOH A . C 2 HOH 27 57 57 HOH HOH A . C 2 HOH 28 63 63 HOH HOH A . C 2 HOH 29 65 65 HOH HOH A . C 2 HOH 30 69 69 HOH HOH A . C 2 HOH 31 70 70 HOH HOH A . C 2 HOH 32 74 74 HOH HOH A . C 2 HOH 33 91 91 HOH HOH A . C 2 HOH 34 94 94 HOH HOH A . C 2 HOH 35 101 101 HOH HOH A . C 2 HOH 36 108 108 HOH HOH A . C 2 HOH 37 109 109 HOH HOH A . D 2 HOH 1 6 6 HOH HOH B . D 2 HOH 2 9 9 HOH HOH B . D 2 HOH 3 12 12 HOH HOH B . D 2 HOH 4 14 14 HOH HOH B . D 2 HOH 5 19 19 HOH HOH B . D 2 HOH 6 20 20 HOH HOH B . D 2 HOH 7 22 22 HOH HOH B . D 2 HOH 8 24 24 HOH HOH B . D 2 HOH 9 27 27 HOH HOH B . D 2 HOH 10 28 28 HOH HOH B . D 2 HOH 11 29 29 HOH HOH B . D 2 HOH 12 31 31 HOH HOH B . D 2 HOH 13 32 32 HOH HOH B . D 2 HOH 14 34 34 HOH HOH B . D 2 HOH 15 40 40 HOH HOH B . D 2 HOH 16 41 41 HOH HOH B . D 2 HOH 17 44 44 HOH HOH B . D 2 HOH 18 45 45 HOH HOH B . D 2 HOH 19 55 55 HOH HOH B . D 2 HOH 20 60 60 HOH HOH B . D 2 HOH 21 66 66 HOH HOH B . D 2 HOH 22 68 68 HOH HOH B . D 2 HOH 23 72 72 HOH HOH B . D 2 HOH 24 79 79 HOH HOH B . D 2 HOH 25 86 86 HOH HOH B . D 2 HOH 26 88 88 HOH HOH B . D 2 HOH 27 97 97 HOH HOH B . D 2 HOH 28 102 102 HOH HOH B . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0067 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 # _cell.length_a 61.059 _cell.length_b 45.734 _cell.length_c 63.357 _cell.angle_alpha 90.000 _cell.angle_beta 103.810 _cell.angle_gamma 90.000 _cell.entry_id 3D3M _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 3D3M _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 4 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3D3M _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'Microbatch under oil' _exptl_crystal_grow.pH 6 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;100mM MMT (D,L Maleic acid, MES and Tris) pH=6, and 20% PEG 1,500, Microbatch under oil, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97873 1.0 2 0.91840 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97873, 0.91840' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 # _reflns.entry_id 3D3M _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 25 _reflns.number_all ? _reflns.number_obs 27035 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value 0.065 _reflns.pdbx_netI_over_sigmaI 47.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.33 _reflns_shell.meanI_over_sigI_obs 5.8 _reflns_shell.pdbx_Rsym_value 0.32 _reflns_shell.pdbx_redundancy 7.5 _reflns_shell.number_unique_all 2682 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3D3M _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 25 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.910 _refine.ls_number_reflns_obs 27016 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.214 _refine.ls_R_factor_R_work 0.211 _refine.ls_R_factor_R_free 0.259 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1357 _refine.B_iso_mean 30.001 _refine.aniso_B[1][1] -0.840 _refine.aniso_B[2][2] 1.250 _refine.aniso_B[3][3] -0.580 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.350 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.pdbx_overall_ESU_R 0.175 _refine.pdbx_overall_ESU_R_Free 0.163 _refine.overall_SU_ML 0.113 _refine.overall_SU_B 3.776 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2649 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 65 _refine_hist.number_atoms_total 2714 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 25 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2720 0.028 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3677 2.152 1.963 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 314 5.971 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 128 41.836 25.781 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 510 17.241 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 2 21.204 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 401 0.178 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2012 0.013 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1595 1.432 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2591 2.465 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1125 3.939 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1086 6.120 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.700 _refine_ls_shell.number_reflns_R_work 1867 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.247 _refine_ls_shell.R_factor_R_free 0.332 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 96 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1963 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3D3M _struct.title 'The Crystal Structure of the C-terminal region of Death Associated Protein 5(DAP5)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D3M _struct_keywords.pdbx_keywords TRANSLATION _struct_keywords.text ;HEAT repeat domain, Structural Genomics, PSI, Protein Structure Initiative, Israel Structural Proteomics Center, ISPC, Acetylation, Initiation factor, Phosphoprotein, Protein biosynthesis, Repressor, Translation regulation, TRANSLATION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code IF4G2_HUMAN _struct_ref.pdbx_db_accession P78344 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLL LSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ WLTWLETA ; _struct_ref.pdbx_align_begin 730 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3D3M A 1 ? 168 ? P78344 730 ? 897 ? 730 897 2 1 3D3M B 1 ? 168 ? P78344 730 ? 897 ? 730 897 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 1 ? ASP A 15 ? LEU A 730 ASP A 744 1 ? 15 HELX_P HELX_P2 2 SER A 17 ? ILE A 29 ? SER A 746 ILE A 758 1 ? 13 HELX_P HELX_P3 3 SER A 30 ? VAL A 35 ? SER A 759 VAL A 764 5 ? 6 HELX_P HELX_P4 4 ASP A 36 ? ASN A 56 ? ASP A 765 ASN A 785 1 ? 21 HELX_P HELX_P5 5 SER A 69 ? HIS A 92 ? SER A 798 HIS A 821 1 ? 24 HELX_P HELX_P6 6 HIS A 94 ? SER A 112 ? HIS A 823 SER A 841 1 ? 19 HELX_P HELX_P7 7 GLY A 117 ? MET A 129 ? GLY A 846 MET A 858 1 ? 13 HELX_P HELX_P8 8 GLU A 133 ? ASP A 143 ? GLU A 862 ASP A 872 1 ? 11 HELX_P HELX_P9 9 GLY A 150 ? THR A 167 ? GLY A 879 THR A 896 1 ? 18 HELX_P HELX_P10 10 LEU B 1 ? ASP B 15 ? LEU B 730 ASP B 744 1 ? 15 HELX_P HELX_P11 11 SER B 17 ? ILE B 29 ? SER B 746 ILE B 758 1 ? 13 HELX_P HELX_P12 12 LYS B 32 ? VAL B 35 ? LYS B 761 VAL B 764 5 ? 4 HELX_P HELX_P13 13 ASP B 36 ? ASN B 56 ? ASP B 765 ASN B 785 1 ? 21 HELX_P HELX_P14 14 SER B 69 ? HIS B 92 ? SER B 798 HIS B 821 1 ? 24 HELX_P HELX_P15 15 HIS B 94 ? ASN B 111 ? HIS B 823 ASN B 840 1 ? 18 HELX_P HELX_P16 16 GLY B 117 ? MET B 129 ? GLY B 846 MET B 858 1 ? 13 HELX_P HELX_P17 17 GLU B 133 ? ASP B 143 ? GLU B 862 ASP B 872 1 ? 11 HELX_P HELX_P18 18 GLY B 150 ? GLU B 166 ? GLY B 879 GLU B 895 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ A LYS 766 ? ? OD1 A ASP 825 ? ? 1.86 2 1 OG B SER 746 ? ? OE1 B GLN 748 ? ? 2.13 3 1 O B ILE 873 ? ? O B GLN 875 ? ? 2.15 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A LYS 806 ? ? CE A LYS 806 ? ? 1.665 1.508 0.157 0.025 N 2 1 CE A LYS 806 ? ? NZ A LYS 806 ? ? 1.691 1.486 0.205 0.025 N 3 1 CB A CYS 838 ? ? SG A CYS 838 ? ? 1.943 1.818 0.125 0.017 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LEU 738 ? ? CG A LEU 738 ? ? CD2 A LEU 738 ? ? 99.48 111.00 -11.52 1.70 N 2 1 CD A LYS 766 ? ? CE A LYS 766 ? ? NZ A LYS 766 ? ? 133.10 111.70 21.40 2.30 N 3 1 CG A MET 773 ? ? SD A MET 773 ? ? CE A MET 773 ? ? 89.54 100.20 -10.66 1.60 N 4 1 CD A LYS 806 ? ? CE A LYS 806 ? ? NZ A LYS 806 ? ? 126.96 111.70 15.26 2.30 N 5 1 CG A MET 816 ? ? SD A MET 816 ? ? CE A MET 816 ? ? 112.02 100.20 11.82 1.60 N 6 1 C A THR 896 ? ? N A ALA 897 ? ? CA A ALA 897 ? ? 92.91 121.70 -28.79 2.50 Y 7 1 CB B ASN 785 ? ? CA B ASN 785 ? ? C B ASN 785 ? ? 97.54 110.40 -12.86 2.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 744 ? ? -164.62 97.65 2 1 PRO A 787 ? ? -45.32 81.62 3 1 PHE B 843 ? ? 44.08 71.38 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASN _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 785 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 786 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 31.36 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id ALA _pdbx_validate_chiral.auth_seq_id 897 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Israel Structural Proteomics Center' _pdbx_SG_project.initial_of_center ISPC # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 789 ? A ASP 60 2 1 Y 1 A GLU 790 ? A GLU 61 3 1 Y 1 A THR 791 ? A THR 62 4 1 Y 1 A ASP 792 ? A ASP 63 5 1 Y 1 A SER 793 ? A SER 64 6 1 Y 1 A SER 794 ? A SER 65 7 1 Y 1 A SER 795 ? A SER 66 8 1 Y 1 B PRO 787 ? B PRO 58 9 1 Y 1 B SER 788 ? B SER 59 10 1 Y 1 B ASP 789 ? B ASP 60 11 1 Y 1 B GLU 790 ? B GLU 61 12 1 Y 1 B THR 791 ? B THR 62 13 1 Y 1 B ASP 792 ? B ASP 63 14 1 Y 1 B SER 793 ? B SER 64 15 1 Y 1 B SER 794 ? B SER 65 16 1 Y 1 B SER 795 ? B SER 66 17 1 Y 1 B THR 896 ? B THR 167 18 1 Y 1 B ALA 897 ? B ALA 168 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 3D3M _atom_sites.fract_transf_matrix[1][1] 0.016378 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004024 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021866 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016253 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_