HEADER TRANSCRIPTION REGULATOR 12-MAY-08 3D3O TITLE CRYSTAL STRUCTURE OF THE EFFECTOR DOMAIN OF THE PUTATIVE TITLE 2 TRANSCRIPTIONAL REGULATOR ICLR FROM ACINETOBACTER SP. ADP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTIONAL REGULATOR, ICIR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EFFECTOR DOMAIN: RESIDUES 81-255; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER SP.; SOURCE 3 ORGANISM_TAXID: 62977; SOURCE 4 STRAIN: ADP1; SOURCE 5 GENE: ACIAD1822; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ALPHA-BETA STRUCTURE, EFFECTOR DOMAIN, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,G.SHACKELFORD,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 3D3O 1 VERSN REVDAT 2 24-FEB-09 3D3O 1 VERSN REVDAT 1 08-JUL-08 3D3O 0 JRNL AUTH Y.KIM,G.SHACKELFORD,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THE EFFECTOR DOMAIN OF THE PUTATIVE JRNL TITL 2 TRANSCRIPTIONAL REGULATOR ICLR FROM ACINETOBACTER SP. ADP1. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 14818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 780 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1075 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2744 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 53.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : 0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.499 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.217 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.088 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2927 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3970 ; 1.656 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 6.521 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;41.160 ;24.414 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 542 ;20.048 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;21.127 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 444 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2220 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1379 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2041 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 156 ; 0.195 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.215 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1847 ; 0.986 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2917 ; 1.599 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1195 ; 2.386 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1053 ; 3.462 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2734 36.1797 75.5819 REMARK 3 T TENSOR REMARK 3 T11: -0.2629 T22: -0.2207 REMARK 3 T33: -0.3488 T12: -0.0014 REMARK 3 T13: -0.0544 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 4.1406 L22: 3.6367 REMARK 3 L33: 2.3983 L12: -1.1305 REMARK 3 L13: -1.2024 L23: -0.1523 REMARK 3 S TENSOR REMARK 3 S11: -0.1143 S12: -0.6686 S13: 0.0456 REMARK 3 S21: 0.2680 S22: 0.1214 S23: -0.1057 REMARK 3 S31: 0.0650 S32: 0.3368 S33: -0.0071 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 169 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6914 49.7791 41.7982 REMARK 3 T TENSOR REMARK 3 T11: -0.2570 T22: -0.0952 REMARK 3 T33: -0.0885 T12: 0.0810 REMARK 3 T13: 0.0658 T23: 0.1680 REMARK 3 L TENSOR REMARK 3 L11: 6.4198 L22: 3.0355 REMARK 3 L33: 3.8624 L12: 0.5145 REMARK 3 L13: 0.7886 L23: -1.6378 REMARK 3 S TENSOR REMARK 3 S11: 0.1038 S12: 1.0213 S13: 1.0000 REMARK 3 S21: 0.0729 S22: -0.0701 S23: 0.0492 REMARK 3 S31: -0.3044 S32: 0.0907 S33: -0.0337 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D3O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-08. REMARK 100 THE RCSB ID CODE IS RCSB047551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15652 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 35.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.85000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26M AMMONIUM SULFATE, 0.1M CHES PH REMARK 280 9.5, 0.2M NACL, PH 8.3, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.19100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.11100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.84050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.11100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.19100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.84050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 174 REMARK 465 ILE A 175 REMARK 465 SER B 170 REMARK 465 PHE B 171 REMARK 465 HIS B 172 REMARK 465 GLN B 173 REMARK 465 PRO B 174 REMARK 465 ILE B 175 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 181 O HOH B 221 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 80 CZ ARG B 80 NH1 -0.097 REMARK 500 GLY B 89 C ILE B 90 N 0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 80 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -1 18.42 -146.89 REMARK 500 ASP A 29 -110.08 58.58 REMARK 500 ARG A 91 117.42 -163.70 REMARK 500 LYS A 166 -12.55 -48.71 REMARK 500 HIS A 172 75.26 -116.89 REMARK 500 ASP B 29 -105.88 71.02 REMARK 500 LYS B 87 0.73 -68.76 REMARK 500 VAL B 94 -82.31 -55.94 REMARK 500 LYS B 167 57.63 -97.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 176 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 176 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 178 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC87506.2 RELATED DB: TARGETDB DBREF 3D3O A 1 175 UNP Q6FBA6 Q6FBA6_ACIAD 81 255 DBREF 3D3O B 1 175 UNP Q6FBA6 Q6FBA6_ACIAD 81 255 SEQADV 3D3O SER A -2 UNP Q6FBA6 EXPRESSION TAG SEQADV 3D3O ASN A -1 UNP Q6FBA6 EXPRESSION TAG SEQADV 3D3O ALA A 0 UNP Q6FBA6 EXPRESSION TAG SEQADV 3D3O SER B -2 UNP Q6FBA6 EXPRESSION TAG SEQADV 3D3O ASN B -1 UNP Q6FBA6 EXPRESSION TAG SEQADV 3D3O ALA B 0 UNP Q6FBA6 EXPRESSION TAG SEQRES 1 A 178 SER ASN ALA LEU PHE SER SER ARG ASP ILE LEU GLU VAL SEQRES 2 A 178 LEU GLN ASP ILE HIS MSE GLU THR GLY GLU THR VAL ALA SEQRES 3 A 178 ILE ALA THR LYS ASN ASP ILE TYR LEU GLN TYR ILE GLN SEQRES 4 A 178 ILE ILE GLU SER VAL HIS ALA LEU ARG PHE HIS VAL ASP SEQRES 5 A 178 GLU ASN ALA ILE ARG PRO LEU THR MSE SER SER ASN GLY SEQRES 6 A 178 TRP MSE LEU MSE SER THR MSE ASN ASP LYS ALA ILE ASP SEQRES 7 A 178 ASN THR VAL ARG ARG ALA ASN THR ILE THR GLN LYS ASP SEQRES 8 A 178 GLY ILE ARG PHE GLU VAL ASP ASP MSE MSE ALA ARG ILE SEQRES 9 A 178 ARG GLN VAL ARG GLU GLN GLY TYR ALA SER ALA GLU HIS SEQRES 10 A 178 ILE PRO PHE VAL GLY GLY GLY THR ILE CYS VAL LEU LEU SEQRES 11 A 178 PRO MSE THR ILE GLN GLY GLN PRO VAL THR MSE GLY LEU SEQRES 12 A 178 GLY GLY ALA LEU ASP ARG ILE LYS GLN ASN TYR ASP ARG SEQRES 13 A 178 TYR LEU GLU LEU LEU LEU ASN GLY VAL GLN GLN LEU LYS SEQRES 14 A 178 LYS SER ASP SER PHE HIS GLN PRO ILE SEQRES 1 B 178 SER ASN ALA LEU PHE SER SER ARG ASP ILE LEU GLU VAL SEQRES 2 B 178 LEU GLN ASP ILE HIS MSE GLU THR GLY GLU THR VAL ALA SEQRES 3 B 178 ILE ALA THR LYS ASN ASP ILE TYR LEU GLN TYR ILE GLN SEQRES 4 B 178 ILE ILE GLU SER VAL HIS ALA LEU ARG PHE HIS VAL ASP SEQRES 5 B 178 GLU ASN ALA ILE ARG PRO LEU THR MSE SER SER ASN GLY SEQRES 6 B 178 TRP MSE LEU MSE SER THR MSE ASN ASP LYS ALA ILE ASP SEQRES 7 B 178 ASN THR VAL ARG ARG ALA ASN THR ILE THR GLN LYS ASP SEQRES 8 B 178 GLY ILE ARG PHE GLU VAL ASP ASP MSE MSE ALA ARG ILE SEQRES 9 B 178 ARG GLN VAL ARG GLU GLN GLY TYR ALA SER ALA GLU HIS SEQRES 10 B 178 ILE PRO PHE VAL GLY GLY GLY THR ILE CYS VAL LEU LEU SEQRES 11 B 178 PRO MSE THR ILE GLN GLY GLN PRO VAL THR MSE GLY LEU SEQRES 12 B 178 GLY GLY ALA LEU ASP ARG ILE LYS GLN ASN TYR ASP ARG SEQRES 13 B 178 TYR LEU GLU LEU LEU LEU ASN GLY VAL GLN GLN LEU LYS SEQRES 14 B 178 LYS SER ASP SER PHE HIS GLN PRO ILE MODRES 3D3O MSE A 16 MET SELENOMETHIONINE MODRES 3D3O MSE A 58 MET SELENOMETHIONINE MODRES 3D3O MSE A 64 MET SELENOMETHIONINE MODRES 3D3O MSE A 66 MET SELENOMETHIONINE MODRES 3D3O MSE A 69 MET SELENOMETHIONINE MODRES 3D3O MSE A 97 MET SELENOMETHIONINE MODRES 3D3O MSE A 98 MET SELENOMETHIONINE MODRES 3D3O MSE A 129 MET SELENOMETHIONINE MODRES 3D3O MSE A 138 MET SELENOMETHIONINE MODRES 3D3O MSE B 16 MET SELENOMETHIONINE MODRES 3D3O MSE B 58 MET SELENOMETHIONINE MODRES 3D3O MSE B 64 MET SELENOMETHIONINE MODRES 3D3O MSE B 66 MET SELENOMETHIONINE MODRES 3D3O MSE B 69 MET SELENOMETHIONINE MODRES 3D3O MSE B 97 MET SELENOMETHIONINE MODRES 3D3O MSE B 98 MET SELENOMETHIONINE MODRES 3D3O MSE B 129 MET SELENOMETHIONINE MODRES 3D3O MSE B 138 MET SELENOMETHIONINE HET MSE A 16 8 HET MSE A 58 8 HET MSE A 64 8 HET MSE A 66 8 HET MSE A 69 8 HET MSE A 97 8 HET MSE A 98 8 HET MSE A 129 8 HET MSE A 138 8 HET MSE B 16 16 HET MSE B 58 8 HET MSE B 64 8 HET MSE B 66 8 HET MSE B 69 8 HET MSE B 97 8 HET MSE B 98 8 HET MSE B 129 8 HET MSE B 138 8 HET SO4 A 176 5 HET SO4 A 177 5 HET SO4 B 176 5 HET SO4 B 177 5 HET SO4 B 178 5 HET NH4 B 179 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM NH4 AMMONIUM ION FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 NH4 H4 N 1+ FORMUL 9 HOH *104(H2 O) HELIX 1 1 ASN A -1 GLY A 19 1 21 HELIX 2 2 PRO A 55 MSE A 58 5 4 HELIX 3 3 SER A 59 SER A 67 1 9 HELIX 4 4 ASN A 70 GLN A 86 1 17 HELIX 5 5 LYS A 87 GLY A 89 5 3 HELIX 6 6 GLU A 93 GLY A 108 1 16 HELIX 7 7 LEU A 144 LYS A 166 1 23 HELIX 8 8 ASN B -1 GLY B 19 1 21 HELIX 9 9 SER B 59 SER B 67 1 9 HELIX 10 10 ASN B 70 GLN B 86 1 17 HELIX 11 11 LYS B 87 GLY B 89 5 3 HELIX 12 12 VAL B 94 GLY B 108 1 15 HELIX 13 13 LEU B 144 ASN B 150 1 7 HELIX 14 14 ASN B 150 LYS B 166 1 17 SHEET 1 A 5 TYR A 31 ILE A 38 0 SHEET 2 A 5 THR A 21 ASN A 28 -1 N ILE A 24 O ILE A 35 SHEET 3 A 5 GLN A 134 ALA A 143 -1 O THR A 137 N ALA A 25 SHEET 4 A 5 GLY A 120 ILE A 131 -1 N VAL A 125 O MSE A 138 SHEET 5 A 5 TYR A 109 GLU A 113 -1 N ALA A 110 O CYS A 124 SHEET 1 B 2 ARG A 45 PHE A 46 0 SHEET 2 B 2 LEU B 44 ARG B 45 -1 O ARG B 45 N ARG A 45 SHEET 1 C 6 ARG B 54 PRO B 55 0 SHEET 2 C 6 TYR B 31 ILE B 38 -1 N LEU B 32 O ARG B 54 SHEET 3 C 6 THR B 21 ASN B 28 -1 N THR B 26 O GLN B 33 SHEET 4 C 6 VAL B 136 ALA B 143 -1 O GLY B 139 N ALA B 23 SHEET 5 C 6 GLY B 120 LEU B 126 -1 N VAL B 125 O MSE B 138 SHEET 6 C 6 TYR B 109 GLU B 113 -1 N ALA B 110 O CYS B 124 LINK C HIS A 15 N MSE A 16 1555 1555 1.32 LINK C MSE A 16 N GLU A 17 1555 1555 1.34 LINK C THR A 57 N MSE A 58 1555 1555 1.32 LINK C MSE A 58 N SER A 59 1555 1555 1.34 LINK C TRP A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N LEU A 65 1555 1555 1.34 LINK C LEU A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N SER A 67 1555 1555 1.34 LINK C THR A 68 N MSE A 69 1555 1555 1.34 LINK C MSE A 69 N ASN A 70 1555 1555 1.34 LINK C AASP A 96 N MSE A 97 1555 1555 1.32 LINK C BASP A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N ALA A 99 1555 1555 1.33 LINK C PRO A 128 N MSE A 129 1555 1555 1.32 LINK C MSE A 129 N THR A 130 1555 1555 1.33 LINK C THR A 137 N MSE A 138 1555 1555 1.32 LINK C MSE A 138 N GLY A 139 1555 1555 1.33 LINK C HIS B 15 N AMSE B 16 1555 1555 1.34 LINK C HIS B 15 N BMSE B 16 1555 1555 1.33 LINK C AMSE B 16 N GLU B 17 1555 1555 1.33 LINK C BMSE B 16 N GLU B 17 1555 1555 1.34 LINK C THR B 57 N MSE B 58 1555 1555 1.32 LINK C MSE B 58 N SER B 59 1555 1555 1.33 LINK C TRP B 63 N MSE B 64 1555 1555 1.33 LINK C MSE B 64 N LEU B 65 1555 1555 1.33 LINK C LEU B 65 N MSE B 66 1555 1555 1.33 LINK C MSE B 66 N SER B 67 1555 1555 1.32 LINK C THR B 68 N MSE B 69 1555 1555 1.33 LINK C MSE B 69 N ASN B 70 1555 1555 1.33 LINK C ASP B 96 N MSE B 97 1555 1555 1.33 LINK C MSE B 97 N MSE B 98 1555 1555 1.34 LINK C MSE B 98 N ALA B 99 1555 1555 1.33 LINK C PRO B 128 N MSE B 129 1555 1555 1.33 LINK C MSE B 129 N THR B 130 1555 1555 1.33 LINK C THR B 137 N MSE B 138 1555 1555 1.33 LINK C MSE B 138 N GLY B 139 1555 1555 1.33 CISPEP 1 ILE A 115 PRO A 116 0 7.98 CISPEP 2 ILE B 115 PRO B 116 0 5.18 SITE 1 AC1 4 TYR A 34 PHE A 46 LEU A 140 GLY A 141 SITE 1 AC2 4 TYR A 34 ARG A 54 PHE A 117 ALA B 43 SITE 1 AC3 4 ASN B 51 ARG B 100 ALA B 112 GLU B 113 SITE 1 AC4 5 ILE B 53 SER B 111 ALA B 112 GLU B 113 SITE 2 AC4 5 TYR B 151 SITE 1 AC5 6 ALA B 23 TYR B 34 ASN B 61 THR B 122 SITE 2 AC5 6 GLY B 139 LEU B 140 CRYST1 60.382 71.681 96.222 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016561 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010393 0.00000