HEADER    HYDROLASE                               14-MAY-08   3D4B              
TITLE     CRYSTAL STRUCTURE OF SIR2TM IN COMPLEX WITH ACETYL P53 PEPTIDE AND    
TITLE    2 DADME-NAD+                                                           
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: NAD-DEPENDENT DEACETYLASE;                                 
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG;                            
COMPND   5 EC: 3.5.1.-;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: ACETYL P53 PEPTIDE;                                        
COMPND   9 CHAIN: D;                                                            
COMPND  10 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA;                            
SOURCE   3 ORGANISM_TAXID: 2336;                                                
SOURCE   4 GENE: NPDA, TM_0490;                                                 
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3);                                
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: PET11A;                                   
SOURCE   9 MOL_ID: 2;                                                           
SOURCE  10 SYNTHETIC: YES                                                       
KEYWDS    ROSSMANN FOLD, CYTOPLASM, HYDROLASE, METAL-BINDING, NAD, ZINC         
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    W.F.HAWSE,K.G.HOFF,D.FATKINS,A.DAINES,O.V.ZUBKOVA,V.L.SCHRAMM,        
AUTHOR   2 W.ZHENG,C.WOLBERGER                                                  
REVDAT   3   16-OCT-24 3D4B    1       REMARK LINK                              
REVDAT   2   24-FEB-09 3D4B    1       VERSN                                    
REVDAT   1   30-SEP-08 3D4B    0                                                
JRNL        AUTH   W.F.HAWSE,K.G.HOFF,D.G.FATKINS,A.DAINES,O.V.ZUBKOVA,         
JRNL        AUTH 2 V.L.SCHRAMM,W.ZHENG,C.WOLBERGER                              
JRNL        TITL   STRUCTURAL INSIGHTS INTO INTERMEDIATE STEPS IN THE SIR2      
JRNL        TITL 2 DEACETYLATION REACTION.                                      
JRNL        REF    STRUCTURE                     V.  16  1368 2008              
JRNL        REFN                   ISSN 0969-2126                               
JRNL        PMID   18786399                                                     
JRNL        DOI    10.1016/J.STR.2008.05.015                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.2.0005                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 50.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.6                           
REMARK   3   NUMBER OF REFLECTIONS             : 22339                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.197                           
REMARK   3   R VALUE            (WORKING SET) : 0.195                           
REMARK   3   FREE R VALUE                     : 0.229                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1170                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.90                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.95                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1578                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 96.54                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2570                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 69                           
REMARK   3   BIN FREE R VALUE                    : 0.3210                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 1851                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 45                                      
REMARK   3   SOLVENT ATOMS            : 142                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 35.55                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.86000                                              
REMARK   3    B22 (A**2) : 0.23000                                              
REMARK   3    B33 (A**2) : -1.10000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.144         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.134         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.091         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.058         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.959                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.952                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  1930 ; 0.016 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  2619 ; 3.431 ; 2.018       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   237 ; 5.707 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):    75 ;38.031 ;24.667       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   319 ;13.281 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):     8 ;19.234 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   308 ; 0.111 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  1413 ; 0.007 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):   888 ; 0.262 ; 0.200       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  1345 ; 0.333 ; 0.200       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   142 ; 0.202 ; 0.200       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    31 ; 0.154 ; 0.200       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):     8 ; 0.125 ; 0.200       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1241 ; 1.148 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  1935 ; 1.938 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):   777 ; 2.857 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):   684 ; 4.575 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 3D4B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-08.                  
REMARK 100 THE DEPOSITION ID IS D_1000047574.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 03-JUL-05                          
REMARK 200  TEMPERATURE           (KELVIN) : 77.4                               
REMARK 200  PH                             : 9.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 24-ID-C                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : NULL                               
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.99                               
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 23509                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.800                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 2.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.4                               
REMARK 200  DATA REDUNDANCY                : 3.200                              
REMARK 200  R MERGE                    (I) : 0.10000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.95                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 96.5                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.37000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL                         
REMARK 200 SOFTWARE USED: AMORE                                                 
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 51.37                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, PH 9.5, VAPOR DIFFUSION,       
REMARK 280  HANGING DROP, TEMPERATURE 292K                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       22.89500            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       53.05700            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       29.86750            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       53.05700            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       22.89500            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       29.86750            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 10370 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ARG A    34                                                      
REMARK 465     GLY A    35                                                      
REMARK 465     PRO A    36                                                      
REMARK 465     ASN A    37                                                      
REMARK 465     GLY A    38                                                      
REMARK 465     ILE A    39                                                      
REMARK 465     TYR A    40                                                      
REMARK 465     LYS A    41                                                      
REMARK 465     LYS A    42                                                      
REMARK 465     TYR A    43                                                      
REMARK 465     SER A    44                                                      
REMARK 465     GLN A    45                                                      
REMARK 465     SER A   246                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS A   4    CG   CD   CE   NZ                                   
REMARK 470     GLU A   5    CG   CD   OE1  OE2                                  
REMARK 470     ARG A  14    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     GLU A  66    CG   CD   OE1  OE2                                  
REMARK 470     GLU A  88    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 110    CD   CE   NZ                                        
REMARK 470     LYS A 111    CG   CD   CE   NZ                                   
REMARK 470     ARG A 126    CD   NE   CZ   NH1  NH2                             
REMARK 470     LYS A 138    CG   CD   CE   NZ                                   
REMARK 470     ASP A 144    CG   OD1  OD2                                       
REMARK 470     GLN A 168    CG   CD   OE1  NE2                                  
REMARK 470     ARG A 172    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     ARG A 180    CD   NE   CZ   NH1  NH2                             
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    HOH A  1086     O    HOH A  1120              1.93            
REMARK 500   O    HOH A  1066     O    HOH A  1090              2.17            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500    PHE A 220   CG    PHE A 220   CD1    -0.098                       
REMARK 500    PHE A 220   CD1   PHE A 220   CE1    -0.125                       
REMARK 500    LYS D  10   C     ALY D  11   N       0.142                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    HIS A  56       58.86   -141.89                                   
REMARK 500    ILE A  68      -57.00   -120.13                                   
REMARK 500    MET A  71      -10.27    -49.46                                   
REMARK 500    ARG A 102       18.62     55.08                                   
REMARK 500    SER D   7       32.08     73.77                                   
REMARK 500    ARG D   8       37.27     73.20                                   
REMARK 500    HIS D   9       73.27     65.84                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A1001  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 124   SG                                                     
REMARK 620 2 CYS A 127   SG  113.5                                              
REMARK 620 3 CYS A 148   SG  102.5 109.6                                        
REMARK 620 4 CYS A 151   SG   95.3 118.2 115.9                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DZD A 1002                
DBREF  3D4B A    1   246  UNP    Q9WYW0   NPD_THEMA        1    246             
DBREF  3D4B D    6    14  PDB    3D4B     3D4B             6     14             
SEQRES   1 A  246  MET LYS MET LYS GLU PHE LEU ASP LEU LEU ASN GLU SER          
SEQRES   2 A  246  ARG LEU THR VAL THR LEU THR GLY ALA GLY ILE SER THR          
SEQRES   3 A  246  PRO SER GLY ILE PRO ASP PHE ARG GLY PRO ASN GLY ILE          
SEQRES   4 A  246  TYR LYS LYS TYR SER GLN ASN VAL PHE ASP ILE ASP PHE          
SEQRES   5 A  246  PHE TYR SER HIS PRO GLU GLU PHE TYR ARG PHE ALA LYS          
SEQRES   6 A  246  GLU GLY ILE PHE PRO MET LEU GLN ALA LYS PRO ASN LEU          
SEQRES   7 A  246  ALA HIS VAL LEU LEU ALA LYS LEU GLU GLU LYS GLY LEU          
SEQRES   8 A  246  ILE GLU ALA VAL ILE THR GLN ASN ILE ASP ARG LEU HIS          
SEQRES   9 A  246  GLN ARG ALA GLY SER LYS LYS VAL ILE GLU LEU HIS GLY          
SEQRES  10 A  246  ASN VAL GLU GLU TYR TYR CYS VAL ARG CYS GLU LYS LYS          
SEQRES  11 A  246  TYR THR VAL GLU ASP VAL ILE LYS LYS LEU GLU SER SER          
SEQRES  12 A  246  ASP VAL PRO LEU CYS ASP ASP CYS ASN SER LEU ILE ARG          
SEQRES  13 A  246  PRO ASN ILE VAL PHE PHE GLY GLU ASN LEU PRO GLN ASP          
SEQRES  14 A  246  ALA LEU ARG GLU ALA ILE GLY LEU SER SER ARG ALA SER          
SEQRES  15 A  246  LEU MET ILE VAL LEU GLY SER SER LEU VAL VAL TYR PRO          
SEQRES  16 A  246  ALA ALA GLU LEU PRO LEU ILE THR VAL ARG SER GLY GLY          
SEQRES  17 A  246  LYS LEU VAL ILE VAL ASN LEU GLY GLU THR PRO PHE ASP          
SEQRES  18 A  246  ASP ILE ALA THR LEU LYS TYR ASN MET ASP VAL VAL GLU          
SEQRES  19 A  246  PHE ALA ARG ARG VAL MET GLU GLU GLY GLY ILE SER              
SEQRES   1 D    9  THR SER ARG HIS LYS ALY LEU MET ALA                          
MODRES 3D4B ALY D   11  LYS  N(6)-ACETYLLYSINE                                  
HET    ALY  D  11      12                                                       
HET     ZN  A1001       1                                                       
HET    DZD  A1002      44                                                       
HETNAM     ALY N(6)-ACETYLLYSINE                                                
HETNAM      ZN ZINC ION                                                         
HETNAM     DZD 5'-O-[(R)-{[(R)-{[(3R,4R)-1-(3-CARBAMOYLBENZYL)-4-               
HETNAM   2 DZD  HYDROXYPYRROLIDIN-3-YL]METHOXY}(HYDROXY)                        
HETNAM   3 DZD  PHOSPHORYL]METHYL}(HYDROXY)PHOSPHORYL]ADENOSINE                 
FORMUL   2  ALY    C8 H16 N2 O3                                                 
FORMUL   3   ZN    ZN 2+                                                        
FORMUL   4  DZD    C24 H33 N7 O11 P2                                            
FORMUL   5  HOH   *142(H2 O)                                                    
HELIX    1   1 LYS A    2  SER A   13  1                                  12    
HELIX    2   2 ALA A   22  GLY A   29  5                                   8    
HELIX    3   3 ASP A   49  HIS A   56  1                                   8    
HELIX    4   4 HIS A   56  ILE A   68  1                                  13    
HELIX    5   5 PHE A   69  GLN A   73  5                                   5    
HELIX    6   6 ASN A   77  LYS A   89  1                                  13    
HELIX    7   7 ARG A  102  ALA A  107  1                                   6    
HELIX    8   8 VAL A  133  LEU A  140  1                                   8    
HELIX    9   9 PRO A  167  ALA A  181  1                                  15    
HELIX   10  10 PRO A  195  ALA A  197  5                                   3    
HELIX   11  11 GLU A  198  SER A  206  1                                   9    
HELIX   12  12 PHE A  220  ALA A  224  5                                   5    
HELIX   13  13 ASP A  231  GLY A  244  1                                  14    
SHEET    1   A 6 VAL A 112  GLU A 114  0                                        
SHEET    2   A 6 ALA A  94  THR A  97  1  N  VAL A  95   O  ILE A 113           
SHEET    3   A 6 THR A  16  THR A  20  1  N  THR A  18   O  ILE A  96           
SHEET    4   A 6 LEU A 183  LEU A 187  1  O  ILE A 185   N  LEU A  19           
SHEET    5   A 6 LYS A 209  VAL A 213  1  O  VAL A 211   N  VAL A 186           
SHEET    6   A 6 LEU A 226  TYR A 228  1  O  TYR A 228   N  ILE A 212           
SHEET    1   B 3 LYS A 130  THR A 132  0                                        
SHEET    2   B 3 GLY A 117  CYS A 124 -1  N  TYR A 122   O  TYR A 131           
SHEET    3   B 3 ILE A 155  ILE A 159 -1  O  ASN A 158   N  GLU A 121           
SHEET    1   C 2 VAL A 193  TYR A 194  0                                        
SHEET    2   C 2 LEU D  12  MET D  13 -1  O  LEU D  12   N  TYR A 194           
LINK         C   LYS D  10                 N   ALY D  11     1555   1555  1.48  
LINK         C   ALY D  11                 N   LEU D  12     1555   1555  1.45  
LINK         SG  CYS A 124                ZN    ZN A1001     1555   1555  2.41  
LINK         SG  CYS A 127                ZN    ZN A1001     1555   1555  2.17  
LINK         SG  CYS A 148                ZN    ZN A1001     1555   1555  2.30  
LINK         SG  CYS A 151                ZN    ZN A1001     1555   1555  2.35  
CISPEP   1 TYR A  194    PRO A  195          0        -0.11                     
SITE     1 AC1  4 CYS A 124  CYS A 127  CYS A 148  CYS A 151                    
SITE     1 AC2 28 GLY A  21  ALA A  22  GLY A  23  SER A  25                    
SITE     2 AC2 28 THR A  26  PRO A  27  ILE A  30  PRO A  31                    
SITE     3 AC2 28 ASP A  32  PHE A  33  GLN A  98  ASN A  99                    
SITE     4 AC2 28 ILE A 100  ASP A 101  HIS A 116  PHE A 162                    
SITE     5 AC2 28 GLY A 188  SER A 189  SER A 190  ASN A 214                    
SITE     6 AC2 28 LEU A 215  GLY A 216  MET A 230  ASP A 231                    
SITE     7 AC2 28 HOH A1003  HOH A1010  HOH A1077  HOH A1114                    
CRYST1   45.790   59.735  106.114  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.021839  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.016741  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.009424        0.00000