HEADER CELL ADHESION 14-MAY-08 3D4C TITLE ZP-N DOMAIN OF MAMMALIAN SPERM RECEPTOR ZP3 (CRYSTAL FORM I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN, LINKER, ZONA PELLUCIDA COMPND 3 PROTEIN 3; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: ZP3 ZP-N DOMAIN, UNP RESIDUES 27-393, UNP RESIDUES 42-143; COMPND 6 SYNONYM: MALTOSE-BINDING PROTEIN/ZP3 ZP-N DOMAIN CHIMERA, MBP, ZONA COMPND 7 PELLUCIDA GLYCOPROTEIN ZP3, SPERM RECEPTOR, ZONA PELLUCIDA PROTEIN C; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: THIS PROTEIN IS A CHIMERA. RESIDUES 2-368 ARE FROM E. COMPND 11 COLI MALTOSE BINDING PROTEIN (MBP), CORRESPOND TO RESIDUES 27-393 OF COMPND 12 SWISS-PROT DATABASE ENTRY P0AEX9 AND CONTAIN MUTATIONS I3T, E360A, COMPND 13 K363A, D364A, R368N (CORRESPONDING TO I28T, E385A, K388A, D389A AND COMPND 14 R393N IN P0AEX9). RESIDUES 372-473 ARE FROM MOUSE ZP3 PROTEIN AND COMPND 15 CORRESPOND TO RESIDUES 42-143 OF SWISS-PROT DATABASE ENTRY P10761. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12), MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 83333, 10090; SOURCE 4 CELLULAR_LOCATION: EXTRACELLULAR MATRIX; SOURCE 5 GENE: ZP3, ZP-3, ZPC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PLJMBP4C, PLJDIS1; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PLJMBP4C, PLJDIS1 KEYWDS FERTILIZATION, OOCYTE, EGG COAT, ZONA PELLUCIDA, VITELLINE ENVELOPE, KEYWDS 2 ZP DOMAIN, EGG-SPERM INTERACTION, SPECIES-SPECIFIC GAMETE KEYWDS 3 RECOGNITION, SPECIATION, BIODIVERSITY, INFERTILITY, EXTRACELLULAR KEYWDS 4 MATRIX, IMMUNOGLOBULIN-LIKE FOLD, GLYCOPROTEIN, RECEPTOR, SECRETED, KEYWDS 5 TRANSMEMBRANE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR L.JOVINE,M.MONNE REVDAT 11 30-OCT-24 3D4C 1 REMARK REVDAT 10 01-NOV-23 3D4C 1 REMARK REVDAT 9 10-NOV-21 3D4C 1 SEQADV HETSYN REVDAT 8 29-JUL-20 3D4C 1 COMPND REMARK SEQADV HET REVDAT 8 2 1 HETNAM FORMUL LINK SITE REVDAT 8 3 1 ATOM REVDAT 7 23-AUG-17 3D4C 1 REMARK REVDAT 6 28-JUN-17 3D4C 1 SOURCE REVDAT 5 17-FEB-16 3D4C 1 REMARK VERSN REVDAT 4 10-NOV-10 3D4C 1 REMARK REVDAT 3 09-JUN-09 3D4C 1 JRNL REVDAT 2 09-DEC-08 3D4C 1 JRNL REVDAT 1 02-DEC-08 3D4C 0 JRNL AUTH M.MONNE,L.HAN,T.SCHWEND,S.BURENDAHL,L.JOVINE JRNL TITL CRYSTAL STRUCTURE OF THE ZP-N DOMAIN OF ZP3 REVEALS THE CORE JRNL TITL 2 FOLD OF ANIMAL EGG COATS JRNL REF NATURE V. 456 653 2008 JRNL REFN ISSN 0028-0836 JRNL PMID 19052627 JRNL DOI 10.1038/NATURE07599 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.D.BLEIL,P.M.WASSARMAN REMARK 1 TITL MAMMALIAN SPERM-EGG INTERACTION: IDENTIFICATION OF A REMARK 1 TITL 2 GLYCOPROTEIN IN MOUSE EGG ZONAE PELLUCIDAE POSSESSING REMARK 1 TITL 3 RECEPTOR ACTIVITY FOR SPERM REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 20 873 1980 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 7418009 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.BORK,C.SANDER REMARK 1 TITL A LARGE DOMAIN COMMON TO SPERM RECEPTORS (ZP2 AND ZP3) AND REMARK 1 TITL 2 TGF-BETA TYPE III RECEPTOR REMARK 1 REF FEBS LETT. V. 300 237 1992 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 1313375 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.JOVINE,H.QI,Z.WILLIAMS,E.LITSCHER,P.M.WASSARMAN REMARK 1 TITL THE ZP DOMAIN IS A CONSERVED MODULE FOR POLYMERIZATION OF REMARK 1 TITL 2 EXTRACELLULAR PROTEINS REMARK 1 REF NAT.CELL BIOL. V. 4 457 2002 REMARK 1 REFN ISSN 1465-7392 REMARK 1 PMID 12021773 REMARK 1 DOI 10.1038/NCB802 REMARK 1 REFERENCE 4 REMARK 1 AUTH L.JOVINE,H.QI,Z.WILLIAMS,E.S.LITSCHER,P.M.WASSARMAN REMARK 1 TITL A DUPLICATED MOTIF CONTROLS ASSEMBLY OF ZONA PELLUCIDA REMARK 1 TITL 2 DOMAIN PROTEINS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 101 5922 2004 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 15079052 REMARK 1 DOI 10.1073/PNAS.0401600101 REMARK 1 REFERENCE 5 REMARK 1 AUTH L.JOVINE,C.C.DARIE,E.S.LITSCHER,P.M.WASSARMAN REMARK 1 TITL ZONA PELLUCIDA DOMAIN PROTEINS REMARK 1 REF ANNU.REV.BIOCHEM. V. 74 83 2005 REMARK 1 REFN ISSN 0066-4154 REMARK 1 PMID 15952882 REMARK 1 DOI 10.1146/ANNUREV.BIOCHEM.74.082803.133039 REMARK 1 REFERENCE 6 REMARK 1 AUTH L.JOVINE,W.G.JANSSEN,E.S.LITSCHER,P.M.WASSARMAN REMARK 1 TITL THE PLAC1-HOMOLOGY REGION OF THE ZP DOMAIN IS SUFFICIENT FOR REMARK 1 TITL 2 PROTEIN POLYMERISATION REMARK 1 REF BMC BIOCHEM. V. 7 11 2006 REMARK 1 REFN ESSN 1471-2091 REMARK 1 PMID 16600035 REMARK 1 DOI 10.1186/1471-2091-7-11 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.950 REMARK 3 FREE R VALUE TEST SET COUNT : 844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.0800 - 2.9000 1.00 2180 154 0.3106 0.3514 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 74.45 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 113.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.64780 REMARK 3 B22 (A**2) : 0.67400 REMARK 3 B33 (A**2) : 6.97380 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3737 REMARK 3 ANGLE : 0.640 5079 REMARK 3 CHIRALITY : 0.041 572 REMARK 3 PLANARITY : 0.004 656 REMARK 3 DIHEDRAL : 13.767 1356 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND (RESID 5:113 OR RESID 482:482 OR RESID REMARK 3 487:488)) REMARK 3 ORIGIN FOR THE GROUP (A): -37.4306 25.9308 -21.8419 REMARK 3 T TENSOR REMARK 3 T11: 0.5336 T22: 0.5004 REMARK 3 T33: 0.8130 T12: -0.0162 REMARK 3 T13: 0.0836 T23: 0.3212 REMARK 3 L TENSOR REMARK 3 L11: 6.8334 L22: 2.9915 REMARK 3 L33: 3.8905 L12: 3.0260 REMARK 3 L13: -0.2228 L23: -2.0383 REMARK 3 S TENSOR REMARK 3 S11: -0.1374 S12: 0.5812 S13: 1.5933 REMARK 3 S21: 0.1077 S22: 0.1226 S23: 0.4839 REMARK 3 S31: 0.1061 S32: 0.0611 S33: 0.0315 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND (RESID 114:258 OR RESID 484:484 OR REMARK 3 RESID 489:489)) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7025 15.1399 -20.8062 REMARK 3 T TENSOR REMARK 3 T11: 0.5052 T22: 0.9851 REMARK 3 T33: 0.9003 T12: -0.1589 REMARK 3 T13: 0.1511 T23: 0.0763 REMARK 3 L TENSOR REMARK 3 L11: 4.3517 L22: 5.2379 REMARK 3 L33: 1.5488 L12: 1.0369 REMARK 3 L13: -0.5199 L23: 0.7474 REMARK 3 S TENSOR REMARK 3 S11: -0.1946 S12: 1.1157 S13: 0.3450 REMARK 3 S21: -0.2264 S22: 0.0644 S23: -1.3146 REMARK 3 S31: -0.0788 S32: 0.7399 S33: 0.0920 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 259:372) REMARK 3 ORIGIN FOR THE GROUP (A): -27.5288 21.4099 -24.6022 REMARK 3 T TENSOR REMARK 3 T11: 0.3942 T22: 0.5191 REMARK 3 T33: 0.5542 T12: -0.1019 REMARK 3 T13: 0.2277 T23: 0.2990 REMARK 3 L TENSOR REMARK 3 L11: 3.4085 L22: 2.1706 REMARK 3 L33: 1.6853 L12: 1.3855 REMARK 3 L13: 1.0731 L23: 0.5430 REMARK 3 S TENSOR REMARK 3 S11: -0.2374 S12: 1.0246 S13: 0.7525 REMARK 3 S21: -0.0335 S22: 0.2424 S23: 0.1719 REMARK 3 S31: -0.0420 S32: 0.3439 S33: 0.0103 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND (RESID 373:446 OR RESID 483:483)) REMARK 3 ORIGIN FOR THE GROUP (A): -35.9856 -4.8040 -14.3636 REMARK 3 T TENSOR REMARK 3 T11: 0.4816 T22: 0.4071 REMARK 3 T33: 0.2568 T12: 0.0237 REMARK 3 T13: -0.0005 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 6.1334 L22: 7.3009 REMARK 3 L33: -0.0590 L12: 2.3620 REMARK 3 L13: 2.5558 L23: 1.8358 REMARK 3 S TENSOR REMARK 3 S11: 0.4164 S12: 0.0914 S13: -0.2037 REMARK 3 S21: 0.4390 S22: -0.1819 S23: -0.0524 REMARK 3 S31: 0.3417 S32: -0.0875 S33: -0.2035 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND (RESID 447:474 OR RESID 486:486)) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6335 -10.0574 -19.2370 REMARK 3 T TENSOR REMARK 3 T11: 0.5028 T22: 0.6547 REMARK 3 T33: 0.4780 T12: 0.1734 REMARK 3 T13: -0.0595 T23: -0.2263 REMARK 3 L TENSOR REMARK 3 L11: 2.5856 L22: 5.1060 REMARK 3 L33: 5.1845 L12: -0.2528 REMARK 3 L13: -0.8822 L23: 4.2159 REMARK 3 S TENSOR REMARK 3 S11: -0.1209 S12: 0.3100 S13: -0.3910 REMARK 3 S21: 0.4801 S22: 0.5313 S23: 0.0060 REMARK 3 S31: 0.0184 S32: 1.2452 S33: -0.4312 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D4C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 40 REMARK 40 MOLPROBITY STRUCTURE VALIDATION REMARK 40 PROGRAMS: MOLPROBITY (KING, REDUCE, AND PROBE) REMARK 40 AUTHORS: I.W.DAVIS,V.B.CHEN, R.M.IMMORMINO, REMARK 40 J.J.HEADD,W.B.ARENDALL,J.M.WORD REMARK 40 AUTHORS: I.W.DAVIS,A.LEAVER-FAY,V.B.CHEN,J.N.BLOCK, REMARK 40 G.J.KAPRAL,X.WANG,L.W.MURRAY,W.B.ARENDALL, REMARK 40 J.SNOEYINK,J.S.RICHARDSON,D.C.RICHARDSON REMARK 40 REFERENCE: MOLPROBITY: ALL-ATOM CONTACTS AND STRUCTURE REMARK 40 VALIDATION FOR PROTEINS AND NUCLEIC ACIDS REMARK 40 NUCLEIC ACIDS RESEARCH. 2007;35:W375-83. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95350 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14196 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 16.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.75400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ENSEMBLE DERIVED FROM PDB ENTRIES 1MG1 (CHAIN A), REMARK 200 1NMU (CHAIN C), 1T0K (CHAIN A), 1YTV (CHAIN B), 3MBP (CHAIN A), REMARK 200 4MBP (CHAIN A) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SAMPLE: 15MG/ML PROTEIN IN 0.05M REMARK 280 SODIUM CHLORIDE, 0.01M TRIS-HCL, PH7.2, 0.001M MALTOSE. REMARK 280 RESERVOIR: 1.0M SODIUM ACETATE, 0,1M SODIUM HEPES, PH7.5, 0.05M REMARK 280 CADMIUM SULFATE. SAMPLE TO RESERVOIR RATIO IN DROP: 1:1, PH7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.52000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.56000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.85000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.52000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.56000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.85000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.52000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.56000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.85000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.52000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.56000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CD CD A 485 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 475 REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 465 HIS A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 284 -54.19 -136.55 REMARK 500 LEU A 458 -112.33 62.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 487 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 40 O REMARK 620 2 HIS A 40 ND1 77.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 484 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 202 ND2 REMARK 620 2 HIS A 204 NE2 94.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 489 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 210 OD2 REMARK 620 2 ASP A 437 OD2 95.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 485 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 380 OE1 REMARK 620 2 GLU A 380 OE2 51.6 REMARK 620 N 1 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D4G RELATED DB: PDB REMARK 900 CRYSTAL FORM II OF THE SAME PROTEIN REMARK 900 RELATED ID: 3EF7 RELATED DB: PDB REMARK 900 CRYSTAL FORM III OF THE SAME PROTEIN REMARK 900 RELATED ID: 3NK3 RELATED DB: PDB REMARK 900 RELATED ID: 3NK4 RELATED DB: PDB DBREF 3D4C A 2 368 UNP P0AEX9 MALE_ECOLI 27 393 DBREF 3D4C A 372 473 UNP P10761 ZP3_MOUSE 42 143 DBREF 3D4C A 369 371 PDB 3D4C 3D4C 369 371 SEQADV 3D4C MET A 1 UNP P0AEX9 INITIATING METHIONINE SEQADV 3D4C THR A 3 UNP P0AEX9 ILE 28 ENGINEERED MUTATION SEQADV 3D4C ALA A 360 UNP P0AEX9 GLU 385 ENGINEERED MUTATION SEQADV 3D4C ALA A 363 UNP P0AEX9 LYS 388 ENGINEERED MUTATION SEQADV 3D4C ALA A 364 UNP P0AEX9 ASP 389 ENGINEERED MUTATION SEQADV 3D4C ASN A 368 UNP P0AEX9 ARG 393 ENGINEERED MUTATION SEQADV 3D4C LEU A 474 UNP P10761 EXPRESSION TAG SEQADV 3D4C GLU A 475 UNP P10761 EXPRESSION TAG SEQADV 3D4C HIS A 476 UNP P10761 EXPRESSION TAG SEQADV 3D4C HIS A 477 UNP P10761 EXPRESSION TAG SEQADV 3D4C HIS A 478 UNP P10761 EXPRESSION TAG SEQADV 3D4C HIS A 479 UNP P10761 EXPRESSION TAG SEQADV 3D4C HIS A 480 UNP P10761 EXPRESSION TAG SEQADV 3D4C HIS A 481 UNP P10761 EXPRESSION TAG SEQRES 1 A 481 MET LYS THR GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 481 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 481 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 481 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 481 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 481 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 481 GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 481 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 481 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 481 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 481 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 481 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 481 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 481 PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 481 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 481 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 481 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 481 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 481 ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 481 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 481 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 481 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 481 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 481 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 481 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 481 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 481 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 481 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 A 481 ALA GLN THR ASN ALA ALA ALA VAL LYS VAL GLU CYS LEU SEQRES 30 A 481 GLU ALA GLU LEU VAL VAL THR VAL SER ARG ASP LEU PHE SEQRES 31 A 481 GLY THR GLY LYS LEU VAL GLN PRO GLY ASP LEU THR LEU SEQRES 32 A 481 GLY SER GLU GLY CYS GLN PRO ARG VAL SER VAL ASP THR SEQRES 33 A 481 ASP VAL VAL ARG PHE ASN ALA GLN LEU HIS GLU CYS SER SEQRES 34 A 481 SER ARG VAL GLN MET THR LYS ASP ALA LEU VAL TYR SER SEQRES 35 A 481 THR PHE LEU LEU HIS ASP PRO ARG PRO VAL SER GLY LEU SEQRES 36 A 481 SER ILE LEU ARG THR ASN ARG VAL GLU VAL PRO ILE GLU SEQRES 37 A 481 CYS ARG TYR PRO ARG LEU GLU HIS HIS HIS HIS HIS HIS HET GLC B 1 12 HET GLC B 2 11 HET CD A 483 1 HET CD A 484 1 HET CD A 485 1 HET CD A 486 1 HET CD A 487 1 HET CD A 488 1 HET CD A 489 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CD CADMIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 CD 7(CD 2+) HELIX 1 1 TYR A 18 THR A 32 1 15 HELIX 2 2 LEU A 44 ALA A 52 1 9 HELIX 3 3 PHE A 68 GLN A 73 1 6 HELIX 4 4 LYS A 84 ASP A 88 1 5 HELIX 5 5 PRO A 92 ALA A 97 1 6 HELIX 6 6 GLU A 132 LYS A 141 1 10 HELIX 7 7 PRO A 155 ILE A 162 1 8 HELIX 8 8 ALA A 187 LYS A 201 1 15 HELIX 9 9 TYR A 211 ASN A 219 1 9 HELIX 10 10 PRO A 230 THR A 238 1 9 HELIX 11 11 LYS A 274 ASN A 283 1 10 HELIX 12 12 ASP A 288 ASP A 297 1 10 HELIX 13 13 LYS A 306 LEU A 312 1 7 HELIX 14 14 PRO A 316 LYS A 327 1 12 HELIX 15 15 MET A 337 ALA A 352 1 16 HELIX 16 16 VAL A 358 ALA A 371 1 14 HELIX 17 17 PRO A 398 ASP A 400 5 3 HELIX 18 18 LEU A 425 CYS A 428 1 4 SHEET 1 A 6 LYS A 35 HIS A 40 0 SHEET 2 A 6 LYS A 7 ILE A 12 1 N ILE A 12 O GLU A 39 SHEET 3 A 6 PRO A 58 HIS A 65 1 N PHE A 62 O TRP A 11 SHEET 4 A 6 PRO A 258 ASN A 268 -1 O SER A 264 N TRP A 63 SHEET 5 A 6 ALA A 106 ALA A 113 -1 N GLU A 112 O GLY A 261 SHEET 6 A 6 GLY A 301 VAL A 303 -1 O ALA A 302 N VAL A 111 SHEET 1 B 4 GLY A 301 VAL A 303 0 SHEET 2 B 4 ALA A 106 ALA A 113 -1 N VAL A 111 O ALA A 302 SHEET 3 B 4 PRO A 258 ASN A 268 -1 O GLY A 261 N GLU A 112 SHEET 4 B 4 GLY A 328 ILE A 330 1 O GLU A 329 N VAL A 260 SHEET 1 C 2 LEU A 76 ALA A 78 0 SHEET 2 C 2 PRO A 258 ASN A 268 -1 O ILE A 267 N ALA A 78 SHEET 1 D 2 LYS A 89 TYR A 91 0 SHEET 2 D 2 ALA A 304 LEU A 305 -1 O ALA A 304 N TYR A 91 SHEET 1 E 2 VAL A 98 TYR A 100 0 SHEET 2 E 2 LYS A 103 LEU A 104 -1 N LYS A 103 O TYR A 100 SHEET 1 F 4 SER A 146 MET A 149 0 SHEET 2 F 4 THR A 223 GLY A 229 1 N ALA A 224 O SER A 146 SHEET 3 F 4 LEU A 114 ASN A 119 -1 N ILE A 117 O THR A 226 SHEET 4 F 4 TYR A 243 VAL A 247 -1 O THR A 246 N LEU A 116 SHEET 1 G 3 THR A 129 TRP A 130 0 SHEET 2 G 3 THR A 250 PHE A 251 -1 O THR A 250 N TRP A 130 SHEET 3 G 3 GLN A 254 PRO A 255 -1 O GLN A 254 N PHE A 251 SHEET 1 H 2 GLY A 167 GLU A 173 0 SHEET 2 H 2 LYS A 176 ASP A 178 -1 O LYS A 176 N GLU A 173 SHEET 1 I 2 GLY A 167 GLU A 173 0 SHEET 2 I 2 ASP A 181 VAL A 184 -1 O GLY A 183 N TYR A 168 SHEET 1 J 4 VAL A 372 LEU A 377 0 SHEET 2 J 4 GLU A 380 SER A 386 -1 O VAL A 382 N GLU A 375 SHEET 3 J 4 VAL A 418 GLN A 424 -1 O PHE A 421 N VAL A 383 SHEET 4 J 4 PRO A 410 ASP A 415 -1 N SER A 413 O ARG A 420 SHEET 1 K 3 LEU A 401 GLY A 404 0 SHEET 2 K 3 ALA A 438 ASP A 448 -1 O LEU A 446 N THR A 402 SHEET 3 K 3 ARG A 462 PRO A 472 -1 O ILE A 467 N THR A 443 SHEET 1 L 3 SER A 430 THR A 435 0 SHEET 2 L 3 ALA A 438 ASP A 448 -1 N ARG A 431 O SER A 442 SHEET 3 L 3 ARG A 462 PRO A 472 -1 O ILE A 467 N THR A 443 SSBOND 1 CYS A 376 CYS A 469 1555 1555 2.07 SSBOND 2 CYS A 408 CYS A 428 1555 1555 2.04 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.41 LINK OE2 GLU A 39 CD CD A 488 1555 1555 2.70 LINK O HIS A 40 CD CD A 487 1555 1555 2.39 LINK ND1 HIS A 40 CD CD A 487 1555 1555 2.58 LINK ND2 ASN A 202 CD CD A 484 1555 1555 2.60 LINK NE2 HIS A 204 CD CD A 484 1555 1555 2.51 LINK OD2 ASP A 210 CD CD A 489 1555 1555 2.63 LINK OE1 GLU A 380 CD CD A 485 1555 1555 2.54 LINK OE2 GLU A 380 CD CD A 485 1555 1555 2.50 LINK OE2 GLU A 427 CD CD A 483 1555 1555 2.68 LINK OD2 ASP A 437 CD CD A 489 1555 1555 2.30 LINK OE1 GLU A 464 CD CD A 486 1555 1555 2.59 CISPEP 1 ARG A 450 PRO A 451 0 -2.56 CRYST1 93.040 95.120 141.700 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010748 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007057 0.00000