data_3D5I # _entry.id 3D5I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3D5I pdb_00003d5i 10.2210/pdb3d5i/pdb RCSB RCSB047617 ? ? WWPDB D_1000047617 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 4 'Structure model' 1 3 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' diffrn_source 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_site 7 4 'Structure model' pdbx_entry_details 8 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3D5I _pdbx_database_status.recvd_initial_deposition_date 2008-05-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1py3 'Structure of ribonuclease Sa2 without ligand' unspecified PDB 1pyl 'Structure of ribonuclease Sa2 without ligand' unspecified PDB 1rsn ;Structure of ribonuclease Sa with exo-2',3'-cyclophosphorotioate ; unspecified PDB 2sar ;Structure of ribonuclease Sa with 3'-GMP ; unspecified PDB 1gmp ;Structure of ribonuclease Sa with 2'-GMP ; unspecified PDB 3D4A . unspecified PDB 3D5G . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bauerova-Hlinkova, V.' 1 'Sevcik, J.' 2 # _citation.id primary _citation.title 'Structure of RNase Sa2 complexes with mononucleotides - new aspects of catalytic reaction and substrate recognition' _citation.journal_abbrev 'Febs J.' _citation.journal_volume 276 _citation.page_first 4156 _citation.page_last 4168 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-464X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19558492 _citation.pdbx_database_id_DOI 10.1111/j.1742-4658.2009.07125.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bauerova-Hlinkova, V.' 1 ? primary 'Dvorsky, R.' 2 ? primary 'Perecko, D.' 3 ? primary 'Povazanec, F.' 4 ? primary 'Sevcik, J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Ribonuclease 10909.012 3 3.1.4.8 ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 non-polymer syn "GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" 361.271 1 ? ? ? ? 4 water nat water 18.015 169 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ribonuclease Sa2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ADPALADVCRTKLPSQAQDTLALIAKNGPYPYNRDGVVFENRESRLPKKGNGYYHEFTVVTPGSNDRGTRRVVTGGYGEQ YWSPDHYATFQEIDPRC ; _entity_poly.pdbx_seq_one_letter_code_can ;ADPALADVCRTKLPSQAQDTLALIAKNGPYPYNRDGVVFENRESRLPKKGNGYYHEFTVVTPGSNDRGTRRVVTGGYGEQ YWSPDHYATFQEIDPRC ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 "GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" SGP 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASP n 1 3 PRO n 1 4 ALA n 1 5 LEU n 1 6 ALA n 1 7 ASP n 1 8 VAL n 1 9 CYS n 1 10 ARG n 1 11 THR n 1 12 LYS n 1 13 LEU n 1 14 PRO n 1 15 SER n 1 16 GLN n 1 17 ALA n 1 18 GLN n 1 19 ASP n 1 20 THR n 1 21 LEU n 1 22 ALA n 1 23 LEU n 1 24 ILE n 1 25 ALA n 1 26 LYS n 1 27 ASN n 1 28 GLY n 1 29 PRO n 1 30 TYR n 1 31 PRO n 1 32 TYR n 1 33 ASN n 1 34 ARG n 1 35 ASP n 1 36 GLY n 1 37 VAL n 1 38 VAL n 1 39 PHE n 1 40 GLU n 1 41 ASN n 1 42 ARG n 1 43 GLU n 1 44 SER n 1 45 ARG n 1 46 LEU n 1 47 PRO n 1 48 LYS n 1 49 LYS n 1 50 GLY n 1 51 ASN n 1 52 GLY n 1 53 TYR n 1 54 TYR n 1 55 HIS n 1 56 GLU n 1 57 PHE n 1 58 THR n 1 59 VAL n 1 60 VAL n 1 61 THR n 1 62 PRO n 1 63 GLY n 1 64 SER n 1 65 ASN n 1 66 ASP n 1 67 ARG n 1 68 GLY n 1 69 THR n 1 70 ARG n 1 71 ARG n 1 72 VAL n 1 73 VAL n 1 74 THR n 1 75 GLY n 1 76 GLY n 1 77 TYR n 1 78 GLY n 1 79 GLU n 1 80 GLN n 1 81 TYR n 1 82 TRP n 1 83 SER n 1 84 PRO n 1 85 ASP n 1 86 HIS n 1 87 TYR n 1 88 ALA n 1 89 THR n 1 90 PHE n 1 91 GLN n 1 92 GLU n 1 93 ILE n 1 94 ASP n 1 95 PRO n 1 96 ARG n 1 97 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain R8/26 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'pEH200 was derived from pKK223-3' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces aureofaciens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1894 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain NovaBlue _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pEH200 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SGP non-polymer . "GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" ? 'C10 H12 N5 O6 P S' 361.271 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 ? ? ? A . n A 1 2 ASP 2 2 ? ? ? A . n A 1 3 PRO 3 3 ? ? ? A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 SER 64 64 ? ? ? A . n A 1 65 ASN 65 65 ? ? ? A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 TRP 82 82 82 TRP TRP A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 CYS 97 97 97 CYS CYS A . n B 1 1 ALA 1 1 1 ALA ALA B . n B 1 2 ASP 2 2 2 ASP ASP B . n B 1 3 PRO 3 3 3 PRO PRO B . n B 1 4 ALA 4 4 4 ALA ALA B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 ALA 6 6 6 ALA ALA B . n B 1 7 ASP 7 7 7 ASP ASP B . n B 1 8 VAL 8 8 8 VAL VAL B . n B 1 9 CYS 9 9 9 CYS CYS B . n B 1 10 ARG 10 10 10 ARG ARG B . n B 1 11 THR 11 11 11 THR THR B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 LEU 13 13 13 LEU LEU B . n B 1 14 PRO 14 14 14 PRO PRO B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 GLN 16 16 16 GLN GLN B . n B 1 17 ALA 17 17 17 ALA ALA B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 ASP 19 19 19 ASP ASP B . n B 1 20 THR 20 20 20 THR THR B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 LYS 26 26 26 LYS LYS B . n B 1 27 ASN 27 27 27 ASN ASN B . n B 1 28 GLY 28 28 28 GLY GLY B . n B 1 29 PRO 29 29 29 PRO PRO B . n B 1 30 TYR 30 30 30 TYR TYR B . n B 1 31 PRO 31 31 31 PRO PRO B . n B 1 32 TYR 32 32 32 TYR TYR B . n B 1 33 ASN 33 33 33 ASN ASN B . n B 1 34 ARG 34 34 34 ARG ARG B . n B 1 35 ASP 35 35 35 ASP ASP B . n B 1 36 GLY 36 36 36 GLY GLY B . n B 1 37 VAL 37 37 37 VAL VAL B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 PHE 39 39 39 PHE PHE B . n B 1 40 GLU 40 40 40 GLU GLU B . n B 1 41 ASN 41 41 41 ASN ASN B . n B 1 42 ARG 42 42 42 ARG ARG B . n B 1 43 GLU 43 43 43 GLU GLU B . n B 1 44 SER 44 44 44 SER SER B . n B 1 45 ARG 45 45 45 ARG ARG B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 PRO 47 47 47 PRO PRO B . n B 1 48 LYS 48 48 48 LYS LYS B . n B 1 49 LYS 49 49 49 LYS LYS B . n B 1 50 GLY 50 50 50 GLY GLY B . n B 1 51 ASN 51 51 51 ASN ASN B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 TYR 53 53 53 TYR TYR B . n B 1 54 TYR 54 54 54 TYR TYR B . n B 1 55 HIS 55 55 55 HIS HIS B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 PHE 57 57 57 PHE PHE B . n B 1 58 THR 58 58 58 THR THR B . n B 1 59 VAL 59 59 59 VAL VAL B . n B 1 60 VAL 60 60 60 VAL VAL B . n B 1 61 THR 61 61 61 THR THR B . n B 1 62 PRO 62 62 62 PRO PRO B . n B 1 63 GLY 63 63 63 GLY GLY B . n B 1 64 SER 64 64 64 SER SER B . n B 1 65 ASN 65 65 65 ASN ASN B . n B 1 66 ASP 66 66 66 ASP ASP B . n B 1 67 ARG 67 67 67 ARG ARG B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 THR 69 69 69 THR THR B . n B 1 70 ARG 70 70 70 ARG ARG B . n B 1 71 ARG 71 71 71 ARG ARG B . n B 1 72 VAL 72 72 72 VAL VAL B . n B 1 73 VAL 73 73 73 VAL VAL B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 GLY 75 75 75 GLY GLY B . n B 1 76 GLY 76 76 76 GLY GLY B . n B 1 77 TYR 77 77 77 TYR TYR B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 GLU 79 79 79 GLU GLU B . n B 1 80 GLN 80 80 80 GLN GLN B . n B 1 81 TYR 81 81 81 TYR TYR B . n B 1 82 TRP 82 82 82 TRP TRP B . n B 1 83 SER 83 83 83 SER SER B . n B 1 84 PRO 84 84 84 PRO PRO B . n B 1 85 ASP 85 85 85 ASP ASP B . n B 1 86 HIS 86 86 86 HIS HIS B . n B 1 87 TYR 87 87 87 TYR TYR B . n B 1 88 ALA 88 88 88 ALA ALA B . n B 1 89 THR 89 89 89 THR THR B . n B 1 90 PHE 90 90 90 PHE PHE B . n B 1 91 GLN 91 91 91 GLN GLN B . n B 1 92 GLU 92 92 92 GLU GLU B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 ASP 94 94 94 ASP ASP B . n B 1 95 PRO 95 95 95 PRO PRO B . n B 1 96 ARG 96 96 96 ARG ARG B . n B 1 97 CYS 97 97 97 CYS CYS B . n C 1 1 ALA 1 1 ? ? ? C . n C 1 2 ASP 2 2 ? ? ? C . n C 1 3 PRO 3 3 ? ? ? C . n C 1 4 ALA 4 4 ? ? ? C . n C 1 5 LEU 5 5 5 LEU LEU C . n C 1 6 ALA 6 6 6 ALA ALA C . n C 1 7 ASP 7 7 7 ASP ASP C . n C 1 8 VAL 8 8 8 VAL VAL C . n C 1 9 CYS 9 9 9 CYS CYS C . n C 1 10 ARG 10 10 10 ARG ARG C . n C 1 11 THR 11 11 11 THR THR C . n C 1 12 LYS 12 12 12 LYS LYS C . n C 1 13 LEU 13 13 13 LEU LEU C . n C 1 14 PRO 14 14 14 PRO PRO C . n C 1 15 SER 15 15 15 SER SER C . n C 1 16 GLN 16 16 16 GLN GLN C . n C 1 17 ALA 17 17 17 ALA ALA C . n C 1 18 GLN 18 18 18 GLN GLN C . n C 1 19 ASP 19 19 19 ASP ASP C . n C 1 20 THR 20 20 20 THR THR C . n C 1 21 LEU 21 21 21 LEU LEU C . n C 1 22 ALA 22 22 22 ALA ALA C . n C 1 23 LEU 23 23 23 LEU LEU C . n C 1 24 ILE 24 24 24 ILE ILE C . n C 1 25 ALA 25 25 25 ALA ALA C . n C 1 26 LYS 26 26 26 LYS LYS C . n C 1 27 ASN 27 27 27 ASN ASN C . n C 1 28 GLY 28 28 28 GLY GLY C . n C 1 29 PRO 29 29 29 PRO PRO C . n C 1 30 TYR 30 30 30 TYR TYR C . n C 1 31 PRO 31 31 31 PRO PRO C . n C 1 32 TYR 32 32 32 TYR TYR C . n C 1 33 ASN 33 33 33 ASN ASN C . n C 1 34 ARG 34 34 34 ARG ARG C . n C 1 35 ASP 35 35 35 ASP ASP C . n C 1 36 GLY 36 36 36 GLY GLY C . n C 1 37 VAL 37 37 37 VAL VAL C . n C 1 38 VAL 38 38 38 VAL VAL C . n C 1 39 PHE 39 39 39 PHE PHE C . n C 1 40 GLU 40 40 40 GLU GLU C . n C 1 41 ASN 41 41 41 ASN ASN C . n C 1 42 ARG 42 42 42 ARG ARG C . n C 1 43 GLU 43 43 43 GLU GLU C . n C 1 44 SER 44 44 44 SER SER C . n C 1 45 ARG 45 45 45 ARG ARG C . n C 1 46 LEU 46 46 46 LEU LEU C . n C 1 47 PRO 47 47 47 PRO PRO C . n C 1 48 LYS 48 48 48 LYS LYS C . n C 1 49 LYS 49 49 49 LYS LYS C . n C 1 50 GLY 50 50 50 GLY GLY C . n C 1 51 ASN 51 51 51 ASN ASN C . n C 1 52 GLY 52 52 52 GLY GLY C . n C 1 53 TYR 53 53 53 TYR TYR C . n C 1 54 TYR 54 54 54 TYR TYR C . n C 1 55 HIS 55 55 55 HIS HIS C . n C 1 56 GLU 56 56 56 GLU GLU C . n C 1 57 PHE 57 57 57 PHE PHE C . n C 1 58 THR 58 58 58 THR THR C . n C 1 59 VAL 59 59 59 VAL VAL C . n C 1 60 VAL 60 60 60 VAL VAL C . n C 1 61 THR 61 61 61 THR THR C . n C 1 62 PRO 62 62 62 PRO PRO C . n C 1 63 GLY 63 63 ? ? ? C . n C 1 64 SER 64 64 ? ? ? C . n C 1 65 ASN 65 65 ? ? ? C . n C 1 66 ASP 66 66 66 ASP ASP C . n C 1 67 ARG 67 67 67 ARG ARG C . n C 1 68 GLY 68 68 68 GLY GLY C . n C 1 69 THR 69 69 69 THR THR C . n C 1 70 ARG 70 70 70 ARG ARG C . n C 1 71 ARG 71 71 71 ARG ARG C . n C 1 72 VAL 72 72 72 VAL VAL C . n C 1 73 VAL 73 73 73 VAL VAL C . n C 1 74 THR 74 74 74 THR THR C . n C 1 75 GLY 75 75 75 GLY GLY C . n C 1 76 GLY 76 76 76 GLY GLY C . n C 1 77 TYR 77 77 77 TYR TYR C . n C 1 78 GLY 78 78 78 GLY GLY C . n C 1 79 GLU 79 79 79 GLU GLU C . n C 1 80 GLN 80 80 80 GLN GLN C . n C 1 81 TYR 81 81 81 TYR TYR C . n C 1 82 TRP 82 82 82 TRP TRP C . n C 1 83 SER 83 83 83 SER SER C . n C 1 84 PRO 84 84 84 PRO PRO C . n C 1 85 ASP 85 85 85 ASP ASP C . n C 1 86 HIS 86 86 86 HIS HIS C . n C 1 87 TYR 87 87 87 TYR TYR C . n C 1 88 ALA 88 88 88 ALA ALA C . n C 1 89 THR 89 89 89 THR THR C . n C 1 90 PHE 90 90 90 PHE PHE C . n C 1 91 GLN 91 91 91 GLN GLN C . n C 1 92 GLU 92 92 92 GLU GLU C . n C 1 93 ILE 93 93 93 ILE ILE C . n C 1 94 ASP 94 94 94 ASP ASP C . n C 1 95 PRO 95 95 95 PRO PRO C . n C 1 96 ARG 96 96 96 ARG ARG C . n C 1 97 CYS 97 97 97 CYS CYS C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 1 98 98 SO4 SO4 A . E 2 SO4 1 99 99 SO4 SO4 A . F 3 SGP 1 98 98 SGP SGP B . G 2 SO4 1 98 98 SO4 SO4 C . H 4 HOH 1 100 6 HOH HOH A . H 4 HOH 2 101 7 HOH HOH A . H 4 HOH 3 102 8 HOH HOH A . H 4 HOH 4 103 13 HOH HOH A . H 4 HOH 5 104 15 HOH HOH A . H 4 HOH 6 105 16 HOH HOH A . H 4 HOH 7 106 20 HOH HOH A . H 4 HOH 8 107 22 HOH HOH A . H 4 HOH 9 108 26 HOH HOH A . H 4 HOH 10 109 27 HOH HOH A . H 4 HOH 11 110 28 HOH HOH A . H 4 HOH 12 111 32 HOH HOH A . H 4 HOH 13 112 36 HOH HOH A . H 4 HOH 14 113 39 HOH HOH A . H 4 HOH 15 114 41 HOH HOH A . H 4 HOH 16 115 42 HOH HOH A . H 4 HOH 17 116 46 HOH HOH A . H 4 HOH 18 117 49 HOH HOH A . H 4 HOH 19 118 52 HOH HOH A . H 4 HOH 20 119 57 HOH HOH A . H 4 HOH 21 120 59 HOH HOH A . H 4 HOH 22 121 60 HOH HOH A . H 4 HOH 23 122 61 HOH HOH A . H 4 HOH 24 123 63 HOH HOH A . H 4 HOH 25 124 70 HOH HOH A . H 4 HOH 26 125 72 HOH HOH A . H 4 HOH 27 126 76 HOH HOH A . H 4 HOH 28 127 77 HOH HOH A . H 4 HOH 29 128 80 HOH HOH A . H 4 HOH 30 129 81 HOH HOH A . H 4 HOH 31 130 83 HOH HOH A . H 4 HOH 32 131 84 HOH HOH A . H 4 HOH 33 132 86 HOH HOH A . H 4 HOH 34 133 88 HOH HOH A . H 4 HOH 35 134 93 HOH HOH A . H 4 HOH 36 135 94 HOH HOH A . H 4 HOH 37 136 95 HOH HOH A . H 4 HOH 38 137 97 HOH HOH A . H 4 HOH 39 138 99 HOH HOH A . H 4 HOH 40 139 100 HOH HOH A . H 4 HOH 41 140 101 HOH HOH A . H 4 HOH 42 141 102 HOH HOH A . H 4 HOH 43 142 103 HOH HOH A . H 4 HOH 44 143 107 HOH HOH A . H 4 HOH 45 144 110 HOH HOH A . H 4 HOH 46 145 112 HOH HOH A . H 4 HOH 47 146 114 HOH HOH A . H 4 HOH 48 147 118 HOH HOH A . H 4 HOH 49 148 119 HOH HOH A . H 4 HOH 50 149 121 HOH HOH A . H 4 HOH 51 150 122 HOH HOH A . H 4 HOH 52 151 125 HOH HOH A . H 4 HOH 53 152 129 HOH HOH A . H 4 HOH 54 153 139 HOH HOH A . H 4 HOH 55 154 140 HOH HOH A . H 4 HOH 56 155 142 HOH HOH A . H 4 HOH 57 156 144 HOH HOH A . H 4 HOH 58 157 145 HOH HOH A . H 4 HOH 59 158 146 HOH HOH A . H 4 HOH 60 159 147 HOH HOH A . H 4 HOH 61 160 148 HOH HOH A . H 4 HOH 62 161 150 HOH HOH A . H 4 HOH 63 162 152 HOH HOH A . H 4 HOH 64 163 154 HOH HOH A . H 4 HOH 65 164 162 HOH HOH A . H 4 HOH 66 165 164 HOH HOH A . H 4 HOH 67 166 166 HOH HOH A . H 4 HOH 68 167 172 HOH HOH A . H 4 HOH 69 168 179 HOH HOH A . H 4 HOH 70 169 182 HOH HOH A . H 4 HOH 71 170 192 HOH HOH A . H 4 HOH 72 171 193 HOH HOH A . H 4 HOH 73 172 23 HOH HOH A . H 4 HOH 74 173 25 HOH HOH A . I 4 HOH 1 114 40 HOH HOH B . I 4 HOH 2 115 113 HOH HOH B . I 4 HOH 3 116 3 HOH HOH B . I 4 HOH 4 117 5 HOH HOH B . I 4 HOH 5 118 9 HOH HOH B . I 4 HOH 6 119 11 HOH HOH B . I 4 HOH 7 120 12 HOH HOH B . I 4 HOH 8 121 14 HOH HOH B . I 4 HOH 9 122 17 HOH HOH B . I 4 HOH 10 123 18 HOH HOH B . I 4 HOH 11 124 24 HOH HOH B . I 4 HOH 12 125 30 HOH HOH B . I 4 HOH 13 126 31 HOH HOH B . I 4 HOH 14 127 33 HOH HOH B . I 4 HOH 15 128 38 HOH HOH B . I 4 HOH 16 129 43 HOH HOH B . I 4 HOH 17 130 44 HOH HOH B . I 4 HOH 18 131 47 HOH HOH B . I 4 HOH 19 132 50 HOH HOH B . I 4 HOH 20 133 51 HOH HOH B . I 4 HOH 21 134 54 HOH HOH B . I 4 HOH 22 135 66 HOH HOH B . I 4 HOH 23 136 67 HOH HOH B . I 4 HOH 24 137 68 HOH HOH B . I 4 HOH 25 138 87 HOH HOH B . I 4 HOH 26 139 98 HOH HOH B . I 4 HOH 27 140 105 HOH HOH B . I 4 HOH 28 141 106 HOH HOH B . I 4 HOH 29 142 108 HOH HOH B . I 4 HOH 30 143 116 HOH HOH B . I 4 HOH 31 144 120 HOH HOH B . I 4 HOH 32 145 126 HOH HOH B . I 4 HOH 33 146 127 HOH HOH B . I 4 HOH 34 147 132 HOH HOH B . I 4 HOH 35 148 134 HOH HOH B . I 4 HOH 36 149 136 HOH HOH B . I 4 HOH 37 150 137 HOH HOH B . I 4 HOH 38 151 138 HOH HOH B . I 4 HOH 39 152 143 HOH HOH B . I 4 HOH 40 153 149 HOH HOH B . I 4 HOH 41 154 151 HOH HOH B . I 4 HOH 42 155 159 HOH HOH B . I 4 HOH 43 156 160 HOH HOH B . I 4 HOH 44 157 161 HOH HOH B . I 4 HOH 45 158 169 HOH HOH B . I 4 HOH 46 159 170 HOH HOH B . I 4 HOH 47 160 188 HOH HOH B . I 4 HOH 48 161 194 HOH HOH B . I 4 HOH 49 162 195 HOH HOH B . I 4 HOH 50 163 196 HOH HOH B . J 4 HOH 1 99 10 HOH HOH C . J 4 HOH 2 100 19 HOH HOH C . J 4 HOH 3 101 21 HOH HOH C . J 4 HOH 4 104 29 HOH HOH C . J 4 HOH 5 105 34 HOH HOH C . J 4 HOH 6 106 35 HOH HOH C . J 4 HOH 7 107 37 HOH HOH C . J 4 HOH 8 108 45 HOH HOH C . J 4 HOH 9 109 48 HOH HOH C . J 4 HOH 10 110 53 HOH HOH C . J 4 HOH 11 111 55 HOH HOH C . J 4 HOH 12 112 56 HOH HOH C . J 4 HOH 13 113 58 HOH HOH C . J 4 HOH 14 114 62 HOH HOH C . J 4 HOH 15 115 64 HOH HOH C . J 4 HOH 16 116 65 HOH HOH C . J 4 HOH 17 117 69 HOH HOH C . J 4 HOH 18 118 71 HOH HOH C . J 4 HOH 19 119 74 HOH HOH C . J 4 HOH 20 120 75 HOH HOH C . J 4 HOH 21 121 78 HOH HOH C . J 4 HOH 22 122 79 HOH HOH C . J 4 HOH 23 123 82 HOH HOH C . J 4 HOH 24 124 85 HOH HOH C . J 4 HOH 25 125 90 HOH HOH C . J 4 HOH 26 126 91 HOH HOH C . J 4 HOH 27 127 92 HOH HOH C . J 4 HOH 28 128 96 HOH HOH C . J 4 HOH 29 129 104 HOH HOH C . J 4 HOH 30 130 109 HOH HOH C . J 4 HOH 31 131 111 HOH HOH C . J 4 HOH 32 132 115 HOH HOH C . J 4 HOH 33 133 117 HOH HOH C . J 4 HOH 34 134 123 HOH HOH C . J 4 HOH 35 135 124 HOH HOH C . J 4 HOH 36 136 128 HOH HOH C . J 4 HOH 37 137 130 HOH HOH C . J 4 HOH 38 138 133 HOH HOH C . J 4 HOH 39 139 135 HOH HOH C . J 4 HOH 40 140 156 HOH HOH C . J 4 HOH 41 141 163 HOH HOH C . J 4 HOH 42 142 175 HOH HOH C . J 4 HOH 43 143 176 HOH HOH C . J 4 HOH 44 144 184 HOH HOH C . J 4 HOH 45 145 186 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 C LYS 48 ? CD ? C LYS 48 CD 2 1 Y 0 C LYS 48 ? CE ? C LYS 48 CE 3 1 Y 0 C LYS 48 ? NZ ? C LYS 48 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _cell.entry_id 3D5I _cell.length_a 101.221 _cell.length_b 66.775 _cell.length_c 57.070 _cell.angle_alpha 90.00 _cell.angle_beta 100.80 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D5I _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3D5I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.89 _exptl_crystal.density_percent_sol 57.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.pdbx_details 'ammonium sulfate, phosphate buffer, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-11-15 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X31' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X31 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1 # _reflns.entry_id 3D5I _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 20 _reflns.number_all 19754 _reflns.number_obs 19754 _reflns.percent_possible_obs 90.2 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.0 _reflns.B_iso_Wilson_estimate 38.5 _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.257 _reflns_shell.percent_possible_all 65.4 _reflns_shell.Rmerge_I_obs 0.212 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.7 _reflns_shell.pdbx_redundancy 2.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 579 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3D5I _refine.ls_number_reflns_obs 16896 _refine.ls_number_reflns_all 19754 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.94 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 93.24 _refine.ls_R_factor_obs 0.2103 _refine.ls_R_factor_all 0.2103 _refine.ls_R_factor_R_work 0.20756 _refine.ls_R_factor_R_free 0.26237 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 913 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.902 _refine.B_iso_mean 19.761 _refine.aniso_B[1][1] -1.07 _refine.aniso_B[2][2] 2.56 _refine.aniso_B[3][3] -1.51 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.04 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 1py3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.279 _refine.pdbx_overall_ESU_R_Free 0.229 _refine.overall_SU_ML 0.159 _refine.overall_SU_B 11.228 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2233 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 169 _refine_hist.number_atoms_total 2440 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 19.94 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 2339 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1618 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.555 1.972 ? 3188 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.707 3.003 ? 3874 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.623 5.000 ? 274 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.865 22.823 ? 124 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.304 15.000 ? 346 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 25.711 15.000 ? 25 'X-RAY DIFFRACTION' ? r_chiral_restr 0.144 0.200 ? 320 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 2628 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 514 'X-RAY DIFFRACTION' ? r_nbd_refined 0.207 0.200 ? 481 'X-RAY DIFFRACTION' ? r_nbd_other 0.219 0.200 ? 1723 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.181 0.200 ? 1095 'X-RAY DIFFRACTION' ? r_nbtor_other 0.088 0.200 ? 1182 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.193 0.200 ? 156 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.150 0.200 ? 25 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.239 0.200 ? 56 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.179 0.200 ? 8 'X-RAY DIFFRACTION' ? r_mcbond_it 0.805 1.500 ? 1749 'X-RAY DIFFRACTION' ? r_mcbond_other 0.130 1.500 ? 561 'X-RAY DIFFRACTION' ? r_mcangle_it 0.953 2.000 ? 2243 'X-RAY DIFFRACTION' ? r_scbond_it 1.607 3.000 ? 1152 'X-RAY DIFFRACTION' ? r_scangle_it 2.434 4.500 ? 945 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 1052 _refine_ls_shell.R_factor_R_work 0.229 _refine_ls_shell.percent_reflns_obs 78.08 _refine_ls_shell.R_factor_R_free 0.372 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 579 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3D5I _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3D5I _struct.title ;Crystal structure of ribonuclease Sa2 with exo-2',3'-cyclophosphorotioate ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D5I _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;ribonuclease, mononucleotide, protein-mononucleotide complex, exo-2', 3'-cyclophosphorotioate, Hydrolase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 4 ? I N N 4 ? J N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q53752_STRAU _struct_ref.pdbx_db_accession Q53752 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADPALADVCRTKLPSQAQDTLALIAKNGPYPYNRDGVVFENRESRLPKKGNGYYHEFTVVTPGSNDRGTRRVVTGGYGEQ YWSPDHYATFQEIDPRC ; _struct_ref.pdbx_align_begin 67 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3D5I A 1 ? 97 ? Q53752 67 ? 163 ? 1 97 2 1 3D5I B 1 ? 97 ? Q53752 67 ? 163 ? 1 97 3 1 3D5I C 1 ? 97 ? Q53752 67 ? 163 ? 1 97 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,H 2 1 B,F,I 3 1 C,G,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 11 ? LEU A 13 ? THR A 11 LEU A 13 5 ? 3 HELX_P HELX_P2 2 PRO A 14 ? LYS A 26 ? PRO A 14 LYS A 26 1 ? 13 HELX_P HELX_P3 3 THR B 11 ? LEU B 13 ? THR B 11 LEU B 13 5 ? 3 HELX_P HELX_P4 4 PRO B 14 ? LYS B 26 ? PRO B 14 LYS B 26 1 ? 13 HELX_P HELX_P5 5 THR C 11 ? LEU C 13 ? THR C 11 LEU C 13 5 ? 3 HELX_P HELX_P6 6 PRO C 14 ? LYS C 26 ? PRO C 14 LYS C 26 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 97 SG ? ? A CYS 9 A CYS 97 1_555 ? ? ? ? ? ? ? 2.009 ? ? disulf2 disulf ? ? B CYS 9 SG ? ? ? 1_555 B CYS 97 SG ? ? B CYS 9 B CYS 97 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf3 disulf ? ? C CYS 9 SG ? ? ? 1_555 C CYS 97 SG ? ? C CYS 9 C CYS 97 1_555 ? ? ? ? ? ? ? 2.030 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 9 ? CYS A 97 ? CYS A 9 ? 1_555 CYS A 97 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 9 ? CYS B 97 ? CYS B 9 ? 1_555 CYS B 97 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS C 9 ? CYS C 97 ? CYS C 9 ? 1_555 CYS C 97 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 28 A . ? GLY 28 A PRO 29 A ? PRO 29 A 1 -5.57 2 GLY 28 B . ? GLY 28 B PRO 29 B ? PRO 29 B 1 11.74 3 GLY 28 C . ? GLY 28 C PRO 29 C ? PRO 29 C 1 2.64 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? C ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 7 ? CYS A 9 ? ASP A 7 CYS A 9 A 2 GLN A 91 ? ASP A 94 ? GLN A 91 ASP A 94 A 3 GLN A 80 ? SER A 83 ? GLN A 80 SER A 83 A 4 ARG A 71 ? THR A 74 ? ARG A 71 THR A 74 A 5 TYR A 54 ? THR A 58 ? TYR A 54 THR A 58 A 6 VAL A 37 ? PHE A 39 ? VAL A 37 PHE A 39 B 1 ALA B 6 ? CYS B 9 ? ALA B 6 CYS B 9 B 2 GLN B 91 ? ASP B 94 ? GLN B 91 ASP B 94 B 3 GLN B 80 ? SER B 83 ? GLN B 80 SER B 83 B 4 ARG B 71 ? THR B 74 ? ARG B 71 THR B 74 B 5 TYR B 54 ? THR B 58 ? TYR B 54 THR B 58 B 6 VAL B 38 ? PHE B 39 ? VAL B 38 PHE B 39 C 1 ALA C 6 ? CYS C 9 ? ALA C 6 CYS C 9 C 2 GLN C 91 ? ASP C 94 ? GLN C 91 ASP C 94 C 3 GLN C 80 ? SER C 83 ? GLN C 80 SER C 83 C 4 ARG C 71 ? THR C 74 ? ARG C 71 THR C 74 C 5 TYR C 54 ? THR C 58 ? TYR C 54 THR C 58 C 6 VAL C 37 ? PHE C 39 ? VAL C 37 PHE C 39 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 8 ? N VAL A 8 O ASP A 94 ? O ASP A 94 A 2 3 O GLN A 91 ? O GLN A 91 N TRP A 82 ? N TRP A 82 A 3 4 O SER A 83 ? O SER A 83 N ARG A 71 ? N ARG A 71 A 4 5 O VAL A 72 ? O VAL A 72 N PHE A 57 ? N PHE A 57 A 5 6 O GLU A 56 ? O GLU A 56 N VAL A 37 ? N VAL A 37 B 1 2 N VAL B 8 ? N VAL B 8 O ASP B 94 ? O ASP B 94 B 2 3 O GLN B 91 ? O GLN B 91 N TRP B 82 ? N TRP B 82 B 3 4 O SER B 83 ? O SER B 83 N ARG B 71 ? N ARG B 71 B 4 5 O THR B 74 ? O THR B 74 N HIS B 55 ? N HIS B 55 B 5 6 O TYR B 54 ? O TYR B 54 N PHE B 39 ? N PHE B 39 C 1 2 N VAL C 8 ? N VAL C 8 O ASP C 94 ? O ASP C 94 C 2 3 O GLN C 91 ? O GLN C 91 N TRP C 82 ? N TRP C 82 C 3 4 O TYR C 81 ? O TYR C 81 N VAL C 73 ? N VAL C 73 C 4 5 O VAL C 72 ? O VAL C 72 N PHE C 57 ? N PHE C 57 C 5 6 O GLU C 56 ? O GLU C 56 N VAL C 37 ? N VAL C 37 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 98 ? 8 'BINDING SITE FOR RESIDUE SO4 A 98' AC2 Software A SO4 99 ? 4 'BINDING SITE FOR RESIDUE SO4 A 99' AC3 Software C SO4 98 ? 5 'BINDING SITE FOR RESIDUE SO4 C 98' AC4 Software B SGP 98 ? 14 'BINDING SITE FOR RESIDUE SGP B 98' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ARG A 34 ? ARG A 34 . ? 1_555 ? 2 AC1 8 GLU A 56 ? GLU A 56 . ? 1_555 ? 3 AC1 8 ARG A 67 ? ARG A 67 . ? 1_555 ? 4 AC1 8 ARG A 71 ? ARG A 71 . ? 1_555 ? 5 AC1 8 HIS A 86 ? HIS A 86 . ? 1_555 ? 6 AC1 8 TYR A 87 ? TYR A 87 . ? 1_555 ? 7 AC1 8 HOH H . ? HOH A 121 . ? 1_555 ? 8 AC1 8 ARG C 45 ? ARG C 45 . ? 1_555 ? 9 AC2 4 SER A 15 ? SER A 15 . ? 1_555 ? 10 AC2 4 HOH H . ? HOH A 150 . ? 1_555 ? 11 AC2 4 GLU B 43 ? GLU B 43 . ? 4_655 ? 12 AC2 4 ARG B 45 ? ARG B 45 . ? 4_655 ? 13 AC3 5 ARG A 42 ? ARG A 42 . ? 1_555 ? 14 AC3 5 ARG C 67 ? ARG C 67 . ? 1_555 ? 15 AC3 5 ARG C 71 ? ARG C 71 . ? 1_555 ? 16 AC3 5 HIS C 86 ? HIS C 86 . ? 1_555 ? 17 AC3 5 TYR C 87 ? TYR C 87 . ? 1_555 ? 18 AC4 14 ARG B 34 ? ARG B 34 . ? 1_555 ? 19 AC4 14 VAL B 38 ? VAL B 38 . ? 1_555 ? 20 AC4 14 PHE B 39 ? PHE B 39 . ? 1_555 ? 21 AC4 14 GLU B 40 ? GLU B 40 . ? 1_555 ? 22 AC4 14 ASN B 41 ? ASN B 41 . ? 1_555 ? 23 AC4 14 ARG B 42 ? ARG B 42 . ? 1_555 ? 24 AC4 14 GLU B 43 ? GLU B 43 . ? 1_555 ? 25 AC4 14 GLU B 56 ? GLU B 56 . ? 1_555 ? 26 AC4 14 ARG B 67 ? ARG B 67 . ? 1_555 ? 27 AC4 14 ARG B 71 ? ARG B 71 . ? 1_555 ? 28 AC4 14 HIS B 86 ? HIS B 86 . ? 1_555 ? 29 AC4 14 TYR B 87 ? TYR B 87 . ? 1_555 ? 30 AC4 14 HOH I . ? HOH B 129 . ? 1_555 ? 31 AC4 14 HOH I . ? HOH B 162 . ? 1_555 ? # _pdbx_entry_details.entry_id 3D5I _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 34 ? ? CZ A ARG 34 ? ? NH1 A ARG 34 ? ? 124.37 120.30 4.07 0.50 N 2 1 NE A ARG 34 ? ? CZ A ARG 34 ? ? NH2 A ARG 34 ? ? 115.38 120.30 -4.92 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 62 ? ? -47.68 89.34 2 1 ASP C 85 ? ? -145.20 43.72 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 109 ? H HOH . 2 1 A HOH 165 ? H HOH . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 65.9747 -1.7064 -26.5082 0.0385 0.0705 -0.0187 -0.0374 0.0238 -0.0084 1.4520 3.7635 2.5446 1.3244 -0.2979 -0.6399 0.0426 0.0458 -0.0690 0.0608 -0.0516 0.1552 -0.1537 0.3764 0.0090 'X-RAY DIFFRACTION' 2 ? refined 59.9950 -1.5900 -14.2669 0.0852 0.0825 0.0224 -0.0485 0.0054 0.0055 2.0196 1.6965 3.0087 -0.5467 -0.9865 0.7606 -0.0147 -0.4095 0.0311 0.2002 0.0456 0.0344 -0.0249 0.2003 -0.0309 'X-RAY DIFFRACTION' 3 ? refined 78.1359 -6.7073 -19.3622 0.0050 0.3404 0.1703 0.0250 -0.1293 0.0367 32.7287 35.1654 15.6626 21.8428 -19.1742 -3.2474 -2.2208 1.7880 -0.2925 1.1373 2.1349 -3.1757 0.6778 -0.4603 0.0858 'X-RAY DIFFRACTION' 4 ? refined 63.4243 3.5787 -20.6650 0.0715 0.0916 0.0251 -0.0588 0.0137 -0.0009 1.6356 1.1658 2.2116 0.0033 -0.7362 0.4633 0.0264 -0.0789 0.2324 -0.0827 -0.0249 -0.0326 -0.4374 0.1712 -0.0016 'X-RAY DIFFRACTION' 5 ? refined 62.8832 -24.3248 13.6041 0.0519 0.0150 0.0254 0.0363 0.0384 0.0219 7.3459 1.5923 4.0373 -0.7858 2.9495 -0.7275 -0.0681 0.3211 -0.1336 -0.1454 0.0821 0.1632 0.4503 -0.1735 -0.0140 'X-RAY DIFFRACTION' 6 ? refined 62.9215 -20.8651 25.9962 0.0186 0.0585 0.0036 0.0613 0.0364 0.0677 3.8333 5.2250 6.9522 -1.2614 2.4159 1.8907 -0.0315 -0.5533 -0.3724 0.5763 0.0584 0.2843 0.3716 -0.1382 -0.0269 'X-RAY DIFFRACTION' 7 ? refined 53.7863 -36.3517 21.0971 -0.0315 0.3661 0.2932 -0.0429 0.1456 -0.1497 16.6346 26.0237 20.9329 18.6105 16.0716 12.6776 0.6778 -2.3389 -1.3948 1.2767 -1.8987 0.5839 0.9252 -2.5466 1.2209 'X-RAY DIFFRACTION' 8 ? refined 66.8576 -24.5310 18.3130 -0.0088 0.0690 0.0598 0.0413 0.0206 0.0158 2.4618 2.4261 2.3501 -1.1188 0.7784 0.9674 0.0754 0.0895 -0.3220 -0.0051 -0.0829 0.0841 0.2568 0.1339 0.0075 'X-RAY DIFFRACTION' 9 ? refined 69.2630 -6.7100 12.1602 -0.0347 0.1077 0.0169 -0.0221 -0.0167 0.0412 4.7781 1.7220 5.2520 -1.1922 0.4619 -0.2726 0.0362 0.1764 0.2206 0.0733 -0.0191 -0.2910 -0.1613 0.5155 -0.0171 'X-RAY DIFFRACTION' 10 ? refined 54.6652 -1.7443 11.6948 0.0335 0.1257 -0.0415 0.0606 -0.0198 0.0159 7.4868 10.5259 11.6099 -1.1577 -5.6140 -4.6681 0.3603 0.3976 0.5123 -0.6499 -0.2618 -0.0659 -0.4668 -0.1012 -0.0984 'X-RAY DIFFRACTION' 11 ? refined 60.4824 -8.0005 2.3799 -0.0143 0.1908 -0.0248 0.0794 0.0096 0.0154 3.0362 1.3906 5.8256 -0.4518 -0.6553 0.9050 0.1897 0.3179 0.0951 -0.0814 -0.2848 0.0040 -0.4183 -0.4534 0.0951 'X-RAY DIFFRACTION' 12 ? refined 69.6987 -7.7936 3.6893 -0.0386 0.1268 -0.0286 0.0103 0.0082 0.0262 11.8187 3.9930 13.8306 -4.8165 4.0057 -4.4566 0.5464 0.5523 -0.1531 -0.0221 -0.3539 -0.1492 -0.2003 0.1951 -0.1926 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 4 A 4 A 34 A 34 ? 'X-RAY DIFFRACTION' ? 2 2 A 35 A 35 A 61 A 61 ? 'X-RAY DIFFRACTION' ? 3 3 A 62 A 62 A 68 A 68 ? 'X-RAY DIFFRACTION' ? 4 4 A 69 A 69 A 97 A 97 ? 'X-RAY DIFFRACTION' ? 5 5 B 1 B 1 B 30 B 30 ? 'X-RAY DIFFRACTION' ? 6 6 B 31 B 31 B 60 B 60 ? 'X-RAY DIFFRACTION' ? 7 7 B 61 B 61 B 68 B 68 ? 'X-RAY DIFFRACTION' ? 8 8 B 69 B 69 B 97 B 97 ? 'X-RAY DIFFRACTION' ? 9 9 C 5 C 5 C 26 C 26 ? 'X-RAY DIFFRACTION' ? 10 10 C 27 C 27 C 34 C 34 ? 'X-RAY DIFFRACTION' ? 11 11 C 35 C 35 C 81 C 81 ? 'X-RAY DIFFRACTION' ? 12 12 C 82 C 82 C 97 C 97 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 1 ? A ALA 1 2 1 Y 1 A ASP 2 ? A ASP 2 3 1 Y 1 A PRO 3 ? A PRO 3 4 1 Y 1 A SER 64 ? A SER 64 5 1 Y 1 A ASN 65 ? A ASN 65 6 1 Y 1 C ALA 1 ? C ALA 1 7 1 Y 1 C ASP 2 ? C ASP 2 8 1 Y 1 C PRO 3 ? C PRO 3 9 1 Y 1 C ALA 4 ? C ALA 4 10 1 Y 1 C GLY 63 ? C GLY 63 11 1 Y 1 C SER 64 ? C SER 64 12 1 Y 1 C ASN 65 ? C ASN 65 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 PHE N N N N 230 PHE CA C N S 231 PHE C C N N 232 PHE O O N N 233 PHE CB C N N 234 PHE CG C Y N 235 PHE CD1 C Y N 236 PHE CD2 C Y N 237 PHE CE1 C Y N 238 PHE CE2 C Y N 239 PHE CZ C Y N 240 PHE OXT O N N 241 PHE H H N N 242 PHE H2 H N N 243 PHE HA H N N 244 PHE HB2 H N N 245 PHE HB3 H N N 246 PHE HD1 H N N 247 PHE HD2 H N N 248 PHE HE1 H N N 249 PHE HE2 H N N 250 PHE HZ H N N 251 PHE HXT H N N 252 PRO N N N N 253 PRO CA C N S 254 PRO C C N N 255 PRO O O N N 256 PRO CB C N N 257 PRO CG C N N 258 PRO CD C N N 259 PRO OXT O N N 260 PRO H H N N 261 PRO HA H N N 262 PRO HB2 H N N 263 PRO HB3 H N N 264 PRO HG2 H N N 265 PRO HG3 H N N 266 PRO HD2 H N N 267 PRO HD3 H N N 268 PRO HXT H N N 269 SER N N N N 270 SER CA C N S 271 SER C C N N 272 SER O O N N 273 SER CB C N N 274 SER OG O N N 275 SER OXT O N N 276 SER H H N N 277 SER H2 H N N 278 SER HA H N N 279 SER HB2 H N N 280 SER HB3 H N N 281 SER HG H N N 282 SER HXT H N N 283 SGP P P N S 284 SGP S1P S N N 285 SGP O1P O N N 286 SGP "O5'" O N N 287 SGP "C5'" C N N 288 SGP "C4'" C N R 289 SGP "O4'" O N N 290 SGP "C3'" C N R 291 SGP "O3'" O N N 292 SGP "C2'" C N R 293 SGP "O2'" O N N 294 SGP "C1'" C N R 295 SGP N9 N Y N 296 SGP C8 C Y N 297 SGP N7 N Y N 298 SGP C5 C Y N 299 SGP C6 C N N 300 SGP O6 O N N 301 SGP N1 N N N 302 SGP C2 C N N 303 SGP N2 N N N 304 SGP N3 N N N 305 SGP C4 C Y N 306 SGP HOP1 H N N 307 SGP "HO5'" H N N 308 SGP "H5'1" H N N 309 SGP "H5'2" H N N 310 SGP "H4'" H N N 311 SGP "H3'" H N N 312 SGP "H2'" H N N 313 SGP "H1'" H N N 314 SGP H8 H N N 315 SGP HN1 H N N 316 SGP HN21 H N N 317 SGP HN22 H N N 318 SO4 S S N N 319 SO4 O1 O N N 320 SO4 O2 O N N 321 SO4 O3 O N N 322 SO4 O4 O N N 323 THR N N N N 324 THR CA C N S 325 THR C C N N 326 THR O O N N 327 THR CB C N R 328 THR OG1 O N N 329 THR CG2 C N N 330 THR OXT O N N 331 THR H H N N 332 THR H2 H N N 333 THR HA H N N 334 THR HB H N N 335 THR HG1 H N N 336 THR HG21 H N N 337 THR HG22 H N N 338 THR HG23 H N N 339 THR HXT H N N 340 TRP N N N N 341 TRP CA C N S 342 TRP C C N N 343 TRP O O N N 344 TRP CB C N N 345 TRP CG C Y N 346 TRP CD1 C Y N 347 TRP CD2 C Y N 348 TRP NE1 N Y N 349 TRP CE2 C Y N 350 TRP CE3 C Y N 351 TRP CZ2 C Y N 352 TRP CZ3 C Y N 353 TRP CH2 C Y N 354 TRP OXT O N N 355 TRP H H N N 356 TRP H2 H N N 357 TRP HA H N N 358 TRP HB2 H N N 359 TRP HB3 H N N 360 TRP HD1 H N N 361 TRP HE1 H N N 362 TRP HE3 H N N 363 TRP HZ2 H N N 364 TRP HZ3 H N N 365 TRP HH2 H N N 366 TRP HXT H N N 367 TYR N N N N 368 TYR CA C N S 369 TYR C C N N 370 TYR O O N N 371 TYR CB C N N 372 TYR CG C Y N 373 TYR CD1 C Y N 374 TYR CD2 C Y N 375 TYR CE1 C Y N 376 TYR CE2 C Y N 377 TYR CZ C Y N 378 TYR OH O N N 379 TYR OXT O N N 380 TYR H H N N 381 TYR H2 H N N 382 TYR HA H N N 383 TYR HB2 H N N 384 TYR HB3 H N N 385 TYR HD1 H N N 386 TYR HD2 H N N 387 TYR HE1 H N N 388 TYR HE2 H N N 389 TYR HH H N N 390 TYR HXT H N N 391 VAL N N N N 392 VAL CA C N S 393 VAL C C N N 394 VAL O O N N 395 VAL CB C N N 396 VAL CG1 C N N 397 VAL CG2 C N N 398 VAL OXT O N N 399 VAL H H N N 400 VAL H2 H N N 401 VAL HA H N N 402 VAL HB H N N 403 VAL HG11 H N N 404 VAL HG12 H N N 405 VAL HG13 H N N 406 VAL HG21 H N N 407 VAL HG22 H N N 408 VAL HG23 H N N 409 VAL HXT H N N 410 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 PHE N CA sing N N 218 PHE N H sing N N 219 PHE N H2 sing N N 220 PHE CA C sing N N 221 PHE CA CB sing N N 222 PHE CA HA sing N N 223 PHE C O doub N N 224 PHE C OXT sing N N 225 PHE CB CG sing N N 226 PHE CB HB2 sing N N 227 PHE CB HB3 sing N N 228 PHE CG CD1 doub Y N 229 PHE CG CD2 sing Y N 230 PHE CD1 CE1 sing Y N 231 PHE CD1 HD1 sing N N 232 PHE CD2 CE2 doub Y N 233 PHE CD2 HD2 sing N N 234 PHE CE1 CZ doub Y N 235 PHE CE1 HE1 sing N N 236 PHE CE2 CZ sing Y N 237 PHE CE2 HE2 sing N N 238 PHE CZ HZ sing N N 239 PHE OXT HXT sing N N 240 PRO N CA sing N N 241 PRO N CD sing N N 242 PRO N H sing N N 243 PRO CA C sing N N 244 PRO CA CB sing N N 245 PRO CA HA sing N N 246 PRO C O doub N N 247 PRO C OXT sing N N 248 PRO CB CG sing N N 249 PRO CB HB2 sing N N 250 PRO CB HB3 sing N N 251 PRO CG CD sing N N 252 PRO CG HG2 sing N N 253 PRO CG HG3 sing N N 254 PRO CD HD2 sing N N 255 PRO CD HD3 sing N N 256 PRO OXT HXT sing N N 257 SER N CA sing N N 258 SER N H sing N N 259 SER N H2 sing N N 260 SER CA C sing N N 261 SER CA CB sing N N 262 SER CA HA sing N N 263 SER C O doub N N 264 SER C OXT sing N N 265 SER CB OG sing N N 266 SER CB HB2 sing N N 267 SER CB HB3 sing N N 268 SER OG HG sing N N 269 SER OXT HXT sing N N 270 SGP P S1P doub N N 271 SGP P O1P sing N N 272 SGP P "O3'" sing N N 273 SGP P "O2'" sing N N 274 SGP O1P HOP1 sing N N 275 SGP "O5'" "C5'" sing N N 276 SGP "O5'" "HO5'" sing N N 277 SGP "C5'" "C4'" sing N N 278 SGP "C5'" "H5'1" sing N N 279 SGP "C5'" "H5'2" sing N N 280 SGP "C4'" "O4'" sing N N 281 SGP "C4'" "C3'" sing N N 282 SGP "C4'" "H4'" sing N N 283 SGP "O4'" "C1'" sing N N 284 SGP "C3'" "O3'" sing N N 285 SGP "C3'" "C2'" sing N N 286 SGP "C3'" "H3'" sing N N 287 SGP "C2'" "O2'" sing N N 288 SGP "C2'" "C1'" sing N N 289 SGP "C2'" "H2'" sing N N 290 SGP "C1'" N9 sing N N 291 SGP "C1'" "H1'" sing N N 292 SGP N9 C8 sing Y N 293 SGP N9 C4 sing Y N 294 SGP C8 N7 doub Y N 295 SGP C8 H8 sing N N 296 SGP N7 C5 sing Y N 297 SGP C5 C6 sing N N 298 SGP C5 C4 doub Y N 299 SGP C6 O6 doub N N 300 SGP C6 N1 sing N N 301 SGP N1 C2 sing N N 302 SGP N1 HN1 sing N N 303 SGP C2 N2 sing N N 304 SGP C2 N3 doub N N 305 SGP N2 HN21 sing N N 306 SGP N2 HN22 sing N N 307 SGP N3 C4 sing N N 308 SO4 S O1 doub N N 309 SO4 S O2 doub N N 310 SO4 S O3 sing N N 311 SO4 S O4 sing N N 312 THR N CA sing N N 313 THR N H sing N N 314 THR N H2 sing N N 315 THR CA C sing N N 316 THR CA CB sing N N 317 THR CA HA sing N N 318 THR C O doub N N 319 THR C OXT sing N N 320 THR CB OG1 sing N N 321 THR CB CG2 sing N N 322 THR CB HB sing N N 323 THR OG1 HG1 sing N N 324 THR CG2 HG21 sing N N 325 THR CG2 HG22 sing N N 326 THR CG2 HG23 sing N N 327 THR OXT HXT sing N N 328 TRP N CA sing N N 329 TRP N H sing N N 330 TRP N H2 sing N N 331 TRP CA C sing N N 332 TRP CA CB sing N N 333 TRP CA HA sing N N 334 TRP C O doub N N 335 TRP C OXT sing N N 336 TRP CB CG sing N N 337 TRP CB HB2 sing N N 338 TRP CB HB3 sing N N 339 TRP CG CD1 doub Y N 340 TRP CG CD2 sing Y N 341 TRP CD1 NE1 sing Y N 342 TRP CD1 HD1 sing N N 343 TRP CD2 CE2 doub Y N 344 TRP CD2 CE3 sing Y N 345 TRP NE1 CE2 sing Y N 346 TRP NE1 HE1 sing N N 347 TRP CE2 CZ2 sing Y N 348 TRP CE3 CZ3 doub Y N 349 TRP CE3 HE3 sing N N 350 TRP CZ2 CH2 doub Y N 351 TRP CZ2 HZ2 sing N N 352 TRP CZ3 CH2 sing Y N 353 TRP CZ3 HZ3 sing N N 354 TRP CH2 HH2 sing N N 355 TRP OXT HXT sing N N 356 TYR N CA sing N N 357 TYR N H sing N N 358 TYR N H2 sing N N 359 TYR CA C sing N N 360 TYR CA CB sing N N 361 TYR CA HA sing N N 362 TYR C O doub N N 363 TYR C OXT sing N N 364 TYR CB CG sing N N 365 TYR CB HB2 sing N N 366 TYR CB HB3 sing N N 367 TYR CG CD1 doub Y N 368 TYR CG CD2 sing Y N 369 TYR CD1 CE1 sing Y N 370 TYR CD1 HD1 sing N N 371 TYR CD2 CE2 doub Y N 372 TYR CD2 HD2 sing N N 373 TYR CE1 CZ doub Y N 374 TYR CE1 HE1 sing N N 375 TYR CE2 CZ sing Y N 376 TYR CE2 HE2 sing N N 377 TYR CZ OH sing N N 378 TYR OH HH sing N N 379 TYR OXT HXT sing N N 380 VAL N CA sing N N 381 VAL N H sing N N 382 VAL N H2 sing N N 383 VAL CA C sing N N 384 VAL CA CB sing N N 385 VAL CA HA sing N N 386 VAL C O doub N N 387 VAL C OXT sing N N 388 VAL CB CG1 sing N N 389 VAL CB CG2 sing N N 390 VAL CB HB sing N N 391 VAL CG1 HG11 sing N N 392 VAL CG1 HG12 sing N N 393 VAL CG1 HG13 sing N N 394 VAL CG2 HG21 sing N N 395 VAL CG2 HG22 sing N N 396 VAL CG2 HG23 sing N N 397 VAL OXT HXT sing N N 398 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PY3 _pdbx_initial_refinement_model.details 'PDB entry 1py3' # _atom_sites.entry_id 3D5I _atom_sites.fract_transf_matrix[1][1] 0.009879 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001884 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014976 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017838 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_