data_3D6O # _entry.id 3D6O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3D6O pdb_00003d6o 10.2210/pdb3d6o/pdb RCSB RCSB047659 ? ? WWPDB D_1000047659 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3D6P . unspecified PDB 3D6Q . unspecified PDB 3D7B . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3D6O _pdbx_database_status.recvd_initial_deposition_date 2008-05-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Leonidas, D.D.' 1 'Zographos, S.E.' 2 'Oikonomakos, N.G.' 3 # _citation.id primary _citation.title ;Morpholino, piperidino, and pyrrolidino derivatives of pyrimidine nucleosides as inhibitors of ribonuclease A: synthesis, biochemical, and crystallographic evaluation. ; _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 52 _citation.page_first 932 _citation.page_last 942 _citation.year 2009 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19173562 _citation.pdbx_database_id_DOI 10.1021/jm800724t # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Samanta, A.' 1 ? primary 'Leonidas, D.D.' 2 ? primary 'Dasgupta, S.' 3 ? primary 'Pathak, T.' 4 ? primary 'Zographos, S.E.' 5 ? primary 'Oikonomakos, N.G.' 6 ? # _cell.entry_id 3D6O _cell.length_a 100.384 _cell.length_b 32.876 _cell.length_c 72.621 _cell.angle_alpha 90.00 _cell.angle_beta 90.40 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D6O _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Ribonuclease pancreatic' 13708.326 2 3.1.27.5 ? ? ? 2 non-polymer syn '1-{5-deoxy-5-[4-(ethoxycarbonyl)piperidin-1-yl]-alpha-L-arabinofuranosyl}pyrimidine-2,4(1H,3H)-dione' 383.396 1 ? ? ? ? 3 water nat water 18.015 313 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNase 1, RNase A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV ; _entity_poly.pdbx_seq_one_letter_code_can ;KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 GLU n 1 3 THR n 1 4 ALA n 1 5 ALA n 1 6 ALA n 1 7 LYS n 1 8 PHE n 1 9 GLU n 1 10 ARG n 1 11 GLN n 1 12 HIS n 1 13 MET n 1 14 ASP n 1 15 SER n 1 16 SER n 1 17 THR n 1 18 SER n 1 19 ALA n 1 20 ALA n 1 21 SER n 1 22 SER n 1 23 SER n 1 24 ASN n 1 25 TYR n 1 26 CYS n 1 27 ASN n 1 28 GLN n 1 29 MET n 1 30 MET n 1 31 LYS n 1 32 SER n 1 33 ARG n 1 34 ASN n 1 35 LEU n 1 36 THR n 1 37 LYS n 1 38 ASP n 1 39 ARG n 1 40 CYS n 1 41 LYS n 1 42 PRO n 1 43 VAL n 1 44 ASN n 1 45 THR n 1 46 PHE n 1 47 VAL n 1 48 HIS n 1 49 GLU n 1 50 SER n 1 51 LEU n 1 52 ALA n 1 53 ASP n 1 54 VAL n 1 55 GLN n 1 56 ALA n 1 57 VAL n 1 58 CYS n 1 59 SER n 1 60 GLN n 1 61 LYS n 1 62 ASN n 1 63 VAL n 1 64 ALA n 1 65 CYS n 1 66 LYS n 1 67 ASN n 1 68 GLY n 1 69 GLN n 1 70 THR n 1 71 ASN n 1 72 CYS n 1 73 TYR n 1 74 GLN n 1 75 SER n 1 76 TYR n 1 77 SER n 1 78 THR n 1 79 MET n 1 80 SER n 1 81 ILE n 1 82 THR n 1 83 ASP n 1 84 CYS n 1 85 ARG n 1 86 GLU n 1 87 THR n 1 88 GLY n 1 89 SER n 1 90 SER n 1 91 LYS n 1 92 TYR n 1 93 PRO n 1 94 ASN n 1 95 CYS n 1 96 ALA n 1 97 TYR n 1 98 LYS n 1 99 THR n 1 100 THR n 1 101 GLN n 1 102 ALA n 1 103 ASN n 1 104 LYS n 1 105 HIS n 1 106 ILE n 1 107 ILE n 1 108 VAL n 1 109 ALA n 1 110 CYS n 1 111 GLU n 1 112 GLY n 1 113 ASN n 1 114 PRO n 1 115 TYR n 1 116 VAL n 1 117 PRO n 1 118 VAL n 1 119 HIS n 1 120 PHE n 1 121 ASP n 1 122 ALA n 1 123 SER n 1 124 VAL n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name bovine _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RNAS1_BOVIN _struct_ref.pdbx_db_accession P61823 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV ; _struct_ref.pdbx_align_begin 27 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3D6O A 1 ? 124 ? P61823 27 ? 150 ? 1 124 2 1 3D6O B 1 ? 124 ? P61823 27 ? 150 ? 1 124 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U1S non-polymer . '1-{5-deoxy-5-[4-(ethoxycarbonyl)piperidin-1-yl]-alpha-L-arabinofuranosyl}pyrimidine-2,4(1H,3H)-dione' ? 'C17 H25 N3 O7' 383.396 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3D6O _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_percent_sol 43.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PEG 4000, Sodium citrate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2006-11-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX9.6' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX9.6 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.92 # _reflns.entry_id 3D6O _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.58 _reflns.number_obs 31074 _reflns.number_all 31270 _reflns.percent_possible_obs 94.9 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.58 _reflns_shell.d_res_low 1.62 _reflns_shell.percent_possible_all 96.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.274 _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_redundancy 2.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3D6O _refine.ls_number_reflns_obs 29500 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30 _refine.ls_d_res_high 1.58 _refine.ls_percent_reflns_obs 94.48 _refine.ls_R_factor_obs 0.18793 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18592 _refine.ls_R_factor_R_free 0.22678 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1574 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.B_iso_mean 15.397 _refine.aniso_B[1][1] -0.12 _refine.aniso_B[2][2] -0.35 _refine.aniso_B[3][3] 0.47 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.10 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 2G8Q' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.101 _refine.pdbx_overall_ESU_R_Free 0.103 _refine.overall_SU_ML 0.063 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.315 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3D6O _refine_analyze.Luzzati_coordinate_error_obs 0.101 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.103 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1902 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 313 _refine_hist.number_atoms_total 2237 _refine_hist.d_res_high 1.58 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.021 ? 1979 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.155 1.937 ? 2680 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.760 5.000 ? 246 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.563 25.222 ? 90 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.926 15.000 ? 340 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.304 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.074 0.200 ? 297 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1485 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.182 0.200 ? 905 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.294 0.200 ? 1355 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.128 0.200 ? 239 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.189 0.200 ? 51 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.121 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.546 1.500 ? 1277 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.882 2.000 ? 2015 'X-RAY DIFFRACTION' ? r_scbond_it 1.299 3.000 ? 785 'X-RAY DIFFRACTION' ? r_scangle_it 2.053 4.500 ? 665 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.58 _refine_ls_shell.d_res_low 1.622 _refine_ls_shell.number_reflns_R_work 2043 _refine_ls_shell.R_factor_R_work 0.231 _refine_ls_shell.percent_reflns_obs 90.73 _refine_ls_shell.R_factor_R_free 0.289 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 121 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3D6O _struct.title ;The RNase A- 5'-Deoxy-5'-N-(ethyl isonipecotatyl)uridine complex ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D6O _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Hydrolase, Ribonuclease, uridine complex, Endonuclease, Glycation, Glycoprotein, Nuclease, Secreted' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_biol.id _struct_biol.details 1 ? 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 3 ? MET A 13 ? THR A 3 MET A 13 1 ? 11 HELX_P HELX_P2 2 ASN A 24 ? ARG A 33 ? ASN A 24 ARG A 33 1 ? 10 HELX_P HELX_P3 3 SER A 50 ? ALA A 56 ? SER A 50 ALA A 56 1 ? 7 HELX_P HELX_P4 4 VAL A 57 ? GLN A 60 ? VAL A 57 GLN A 60 5 ? 4 HELX_P HELX_P5 5 THR B 3 ? MET B 13 ? THR B 3 MET B 13 1 ? 11 HELX_P HELX_P6 6 ASN B 24 ? ARG B 33 ? ASN B 24 ARG B 33 1 ? 10 HELX_P HELX_P7 7 SER B 50 ? ALA B 56 ? SER B 50 ALA B 56 1 ? 7 HELX_P HELX_P8 8 VAL B 57 ? GLN B 60 ? VAL B 57 GLN B 60 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 84 SG ? ? A CYS 26 A CYS 84 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 40 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 40 A CYS 95 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf3 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 110 SG ? ? A CYS 58 A CYS 110 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf4 disulf ? ? A CYS 65 SG ? ? ? 1_555 A CYS 72 SG ? ? A CYS 65 A CYS 72 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf5 disulf ? ? B CYS 26 SG ? ? ? 1_555 B CYS 84 SG ? ? B CYS 26 B CYS 84 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf6 disulf ? ? B CYS 40 SG ? ? ? 1_555 B CYS 95 SG ? ? B CYS 40 B CYS 95 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf7 disulf ? ? B CYS 58 SG ? ? ? 1_555 B CYS 110 SG ? ? B CYS 58 B CYS 110 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf8 disulf ? ? B CYS 65 SG ? ? ? 1_555 B CYS 72 SG ? ? B CYS 65 B CYS 72 1_555 ? ? ? ? ? ? ? 2.030 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 92 A . ? TYR 92 A PRO 93 A ? PRO 93 A 1 4.87 2 ASN 113 A . ? ASN 113 A PRO 114 A ? PRO 114 A 1 7.57 3 TYR 92 B . ? TYR 92 B PRO 93 B ? PRO 93 B 1 8.64 4 ASN 113 B . ? ASN 113 B PRO 114 B ? PRO 114 B 1 3.23 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 5 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 43 ? VAL A 47 ? VAL A 43 VAL A 47 A 2 MET A 79 ? GLU A 86 ? MET A 79 GLU A 86 A 3 TYR A 97 ? GLU A 111 ? TYR A 97 GLU A 111 A 4 CYS A 72 ? GLN A 74 ? CYS A 72 GLN A 74 A 5 LYS A 61 ? VAL A 63 ? LYS A 61 VAL A 63 B 1 VAL A 43 ? VAL A 47 ? VAL A 43 VAL A 47 B 2 MET A 79 ? GLU A 86 ? MET A 79 GLU A 86 B 3 TYR A 97 ? GLU A 111 ? TYR A 97 GLU A 111 B 4 VAL A 116 ? VAL A 124 ? VAL A 116 VAL A 124 C 1 VAL B 43 ? VAL B 47 ? VAL B 43 VAL B 47 C 2 MET B 79 ? GLU B 86 ? MET B 79 GLU B 86 C 3 TYR B 97 ? GLU B 111 ? TYR B 97 GLU B 111 C 4 CYS B 72 ? GLN B 74 ? CYS B 72 GLN B 74 C 5 LYS B 61 ? VAL B 63 ? LYS B 61 VAL B 63 D 1 VAL B 43 ? VAL B 47 ? VAL B 43 VAL B 47 D 2 MET B 79 ? GLU B 86 ? MET B 79 GLU B 86 D 3 TYR B 97 ? GLU B 111 ? TYR B 97 GLU B 111 D 4 VAL B 116 ? VAL B 124 ? VAL B 116 VAL B 124 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 46 ? N PHE A 46 O THR A 82 ? O THR A 82 A 2 3 N ASP A 83 ? N ASP A 83 O THR A 100 ? O THR A 100 A 3 4 O VAL A 108 ? O VAL A 108 N TYR A 73 ? N TYR A 73 A 4 5 O GLN A 74 ? O GLN A 74 N LYS A 61 ? N LYS A 61 B 1 2 N PHE A 46 ? N PHE A 46 O THR A 82 ? O THR A 82 B 2 3 N ASP A 83 ? N ASP A 83 O THR A 100 ? O THR A 100 B 3 4 N ALA A 109 ? N ALA A 109 O VAL A 118 ? O VAL A 118 C 1 2 N ASN B 44 ? N ASN B 44 O CYS B 84 ? O CYS B 84 C 2 3 N ASP B 83 ? N ASP B 83 O THR B 100 ? O THR B 100 C 3 4 O VAL B 108 ? O VAL B 108 N TYR B 73 ? N TYR B 73 C 4 5 O GLN B 74 ? O GLN B 74 N LYS B 61 ? N LYS B 61 D 1 2 N ASN B 44 ? N ASN B 44 O CYS B 84 ? O CYS B 84 D 2 3 N ASP B 83 ? N ASP B 83 O THR B 100 ? O THR B 100 D 3 4 N ALA B 109 ? N ALA B 109 O VAL B 118 ? O VAL B 118 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id U1S _struct_site.pdbx_auth_seq_id 125 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE U1S A 125' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 HIS A 12 ? HIS A 12 . ? 1_555 ? 2 AC1 10 LYS A 41 ? LYS A 41 . ? 1_555 ? 3 AC1 10 ASN A 44 ? ASN A 44 . ? 1_555 ? 4 AC1 10 THR A 45 ? THR A 45 . ? 1_555 ? 5 AC1 10 HIS A 119 ? HIS A 119 . ? 1_555 ? 6 AC1 10 PHE A 120 ? PHE A 120 . ? 1_555 ? 7 AC1 10 HOH D . ? HOH A 126 . ? 1_555 ? 8 AC1 10 HOH D . ? HOH A 142 . ? 1_555 ? 9 AC1 10 HOH D . ? HOH A 174 . ? 1_555 ? 10 AC1 10 HOH D . ? HOH A 219 . ? 1_555 ? # _database_PDB_matrix.entry_id 3D6O _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3D6O _atom_sites.fract_transf_matrix[1][1] 0.009962 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000070 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030417 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013770 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 MET 13 13 13 MET MET A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 HIS 48 48 48 HIS HIS A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 GLN 55 55 55 GLN GLN A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 CYS 58 58 58 CYS CYS A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 CYS 65 65 65 CYS CYS A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 CYS 72 72 72 CYS CYS A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 CYS 84 84 84 CYS CYS A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 CYS 110 110 110 CYS CYS A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 VAL 124 124 124 VAL VAL A . n B 1 1 LYS 1 1 1 LYS LYS B . n B 1 2 GLU 2 2 2 GLU GLU B . n B 1 3 THR 3 3 3 THR THR B . n B 1 4 ALA 4 4 4 ALA ALA B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 ALA 6 6 6 ALA ALA B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 PHE 8 8 8 PHE PHE B . n B 1 9 GLU 9 9 9 GLU GLU B . n B 1 10 ARG 10 10 10 ARG ARG B . n B 1 11 GLN 11 11 11 GLN GLN B . n B 1 12 HIS 12 12 12 HIS HIS B . n B 1 13 MET 13 13 13 MET MET B . n B 1 14 ASP 14 14 14 ASP ASP B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 SER 16 16 16 SER SER B . n B 1 17 THR 17 17 17 THR THR B . n B 1 18 SER 18 18 18 SER SER B . n B 1 19 ALA 19 19 19 ALA ALA B . n B 1 20 ALA 20 20 20 ALA ALA B . n B 1 21 SER 21 21 21 SER SER B . n B 1 22 SER 22 22 22 SER SER B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 ASN 24 24 24 ASN ASN B . n B 1 25 TYR 25 25 25 TYR TYR B . n B 1 26 CYS 26 26 26 CYS CYS B . n B 1 27 ASN 27 27 27 ASN ASN B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 MET 29 29 29 MET MET B . n B 1 30 MET 30 30 30 MET MET B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 SER 32 32 32 SER SER B . n B 1 33 ARG 33 33 33 ARG ARG B . n B 1 34 ASN 34 34 34 ASN ASN B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 THR 36 36 36 THR THR B . n B 1 37 LYS 37 37 37 LYS LYS B . n B 1 38 ASP 38 38 38 ASP ASP B . n B 1 39 ARG 39 39 39 ARG ARG B . n B 1 40 CYS 40 40 40 CYS CYS B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 PRO 42 42 42 PRO PRO B . n B 1 43 VAL 43 43 43 VAL VAL B . n B 1 44 ASN 44 44 44 ASN ASN B . n B 1 45 THR 45 45 45 THR THR B . n B 1 46 PHE 46 46 46 PHE PHE B . n B 1 47 VAL 47 47 47 VAL VAL B . n B 1 48 HIS 48 48 48 HIS HIS B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 SER 50 50 50 SER SER B . n B 1 51 LEU 51 51 51 LEU LEU B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 ASP 53 53 53 ASP ASP B . n B 1 54 VAL 54 54 54 VAL VAL B . n B 1 55 GLN 55 55 55 GLN GLN B . n B 1 56 ALA 56 56 56 ALA ALA B . n B 1 57 VAL 57 57 57 VAL VAL B . n B 1 58 CYS 58 58 58 CYS CYS B . n B 1 59 SER 59 59 59 SER SER B . n B 1 60 GLN 60 60 60 GLN GLN B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 ASN 62 62 62 ASN ASN B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 ALA 64 64 64 ALA ALA B . n B 1 65 CYS 65 65 65 CYS CYS B . n B 1 66 LYS 66 66 66 LYS LYS B . n B 1 67 ASN 67 67 67 ASN ASN B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 GLN 69 69 69 GLN GLN B . n B 1 70 THR 70 70 70 THR THR B . n B 1 71 ASN 71 71 71 ASN ASN B . n B 1 72 CYS 72 72 72 CYS CYS B . n B 1 73 TYR 73 73 73 TYR TYR B . n B 1 74 GLN 74 74 74 GLN GLN B . n B 1 75 SER 75 75 75 SER SER B . n B 1 76 TYR 76 76 76 TYR TYR B . n B 1 77 SER 77 77 77 SER SER B . n B 1 78 THR 78 78 78 THR THR B . n B 1 79 MET 79 79 79 MET MET B . n B 1 80 SER 80 80 80 SER SER B . n B 1 81 ILE 81 81 81 ILE ILE B . n B 1 82 THR 82 82 82 THR THR B . n B 1 83 ASP 83 83 83 ASP ASP B . n B 1 84 CYS 84 84 84 CYS CYS B . n B 1 85 ARG 85 85 85 ARG ARG B . n B 1 86 GLU 86 86 86 GLU GLU B . n B 1 87 THR 87 87 87 THR THR B . n B 1 88 GLY 88 88 88 GLY GLY B . n B 1 89 SER 89 89 89 SER SER B . n B 1 90 SER 90 90 90 SER SER B . n B 1 91 LYS 91 91 91 LYS LYS B . n B 1 92 TYR 92 92 92 TYR TYR B . n B 1 93 PRO 93 93 93 PRO PRO B . n B 1 94 ASN 94 94 94 ASN ASN B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 TYR 97 97 97 TYR TYR B . n B 1 98 LYS 98 98 98 LYS LYS B . n B 1 99 THR 99 99 99 THR THR B . n B 1 100 THR 100 100 100 THR THR B . n B 1 101 GLN 101 101 101 GLN GLN B . n B 1 102 ALA 102 102 102 ALA ALA B . n B 1 103 ASN 103 103 103 ASN ASN B . n B 1 104 LYS 104 104 104 LYS LYS B . n B 1 105 HIS 105 105 105 HIS HIS B . n B 1 106 ILE 106 106 106 ILE ILE B . n B 1 107 ILE 107 107 107 ILE ILE B . n B 1 108 VAL 108 108 108 VAL VAL B . n B 1 109 ALA 109 109 109 ALA ALA B . n B 1 110 CYS 110 110 110 CYS CYS B . n B 1 111 GLU 111 111 111 GLU GLU B . n B 1 112 GLY 112 112 112 GLY GLY B . n B 1 113 ASN 113 113 113 ASN ASN B . n B 1 114 PRO 114 114 114 PRO PRO B . n B 1 115 TYR 115 115 115 TYR TYR B . n B 1 116 VAL 116 116 116 VAL VAL B . n B 1 117 PRO 117 117 117 PRO PRO B . n B 1 118 VAL 118 118 118 VAL VAL B . n B 1 119 HIS 119 119 119 HIS HIS B . n B 1 120 PHE 120 120 120 PHE PHE B . n B 1 121 ASP 121 121 121 ASP ASP B . n B 1 122 ALA 122 122 122 ALA ALA B . n B 1 123 SER 123 123 123 SER SER B . n B 1 124 VAL 124 124 124 VAL VAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 U1S 1 125 1 U1S U1S A . D 3 HOH 1 126 1 HOH HOH A . D 3 HOH 2 127 4 HOH HOH A . D 3 HOH 3 128 7 HOH HOH A . D 3 HOH 4 129 10 HOH HOH A . D 3 HOH 5 130 11 HOH HOH A . D 3 HOH 6 131 16 HOH HOH A . D 3 HOH 7 132 19 HOH HOH A . D 3 HOH 8 133 20 HOH HOH A . D 3 HOH 9 134 21 HOH HOH A . D 3 HOH 10 135 22 HOH HOH A . D 3 HOH 11 136 23 HOH HOH A . D 3 HOH 12 137 25 HOH HOH A . D 3 HOH 13 138 26 HOH HOH A . D 3 HOH 14 139 29 HOH HOH A . D 3 HOH 15 140 33 HOH HOH A . D 3 HOH 16 141 37 HOH HOH A . D 3 HOH 17 142 38 HOH HOH A . D 3 HOH 18 143 40 HOH HOH A . D 3 HOH 19 144 42 HOH HOH A . D 3 HOH 20 145 43 HOH HOH A . D 3 HOH 21 146 46 HOH HOH A . D 3 HOH 22 147 47 HOH HOH A . D 3 HOH 23 148 51 HOH HOH A . D 3 HOH 24 149 54 HOH HOH A . D 3 HOH 25 150 59 HOH HOH A . D 3 HOH 26 151 64 HOH HOH A . D 3 HOH 27 152 66 HOH HOH A . D 3 HOH 28 153 68 HOH HOH A . D 3 HOH 29 154 72 HOH HOH A . D 3 HOH 30 155 73 HOH HOH A . D 3 HOH 31 156 74 HOH HOH A . D 3 HOH 32 157 75 HOH HOH A . D 3 HOH 33 158 76 HOH HOH A . D 3 HOH 34 159 77 HOH HOH A . D 3 HOH 35 160 78 HOH HOH A . D 3 HOH 36 161 81 HOH HOH A . D 3 HOH 37 162 82 HOH HOH A . D 3 HOH 38 163 83 HOH HOH A . D 3 HOH 39 164 84 HOH HOH A . D 3 HOH 40 165 85 HOH HOH A . D 3 HOH 41 166 86 HOH HOH A . D 3 HOH 42 167 90 HOH HOH A . D 3 HOH 43 168 93 HOH HOH A . D 3 HOH 44 169 94 HOH HOH A . D 3 HOH 45 170 95 HOH HOH A . D 3 HOH 46 171 97 HOH HOH A . D 3 HOH 47 172 98 HOH HOH A . D 3 HOH 48 173 100 HOH HOH A . D 3 HOH 49 174 102 HOH HOH A . D 3 HOH 50 175 103 HOH HOH A . D 3 HOH 51 176 104 HOH HOH A . D 3 HOH 52 177 106 HOH HOH A . D 3 HOH 53 178 111 HOH HOH A . D 3 HOH 54 179 112 HOH HOH A . D 3 HOH 55 180 113 HOH HOH A . D 3 HOH 56 181 114 HOH HOH A . D 3 HOH 57 182 119 HOH HOH A . D 3 HOH 58 183 122 HOH HOH A . D 3 HOH 59 184 123 HOH HOH A . D 3 HOH 60 185 125 HOH HOH A . D 3 HOH 61 186 126 HOH HOH A . D 3 HOH 62 187 129 HOH HOH A . D 3 HOH 63 188 130 HOH HOH A . D 3 HOH 64 189 131 HOH HOH A . D 3 HOH 65 190 135 HOH HOH A . D 3 HOH 66 191 139 HOH HOH A . D 3 HOH 67 192 140 HOH HOH A . D 3 HOH 68 193 141 HOH HOH A . D 3 HOH 69 194 142 HOH HOH A . D 3 HOH 70 195 146 HOH HOH A . D 3 HOH 71 196 149 HOH HOH A . D 3 HOH 72 197 150 HOH HOH A . D 3 HOH 73 198 153 HOH HOH A . D 3 HOH 74 199 154 HOH HOH A . D 3 HOH 75 200 157 HOH HOH A . D 3 HOH 76 201 159 HOH HOH A . D 3 HOH 77 202 160 HOH HOH A . D 3 HOH 78 203 161 HOH HOH A . D 3 HOH 79 204 162 HOH HOH A . D 3 HOH 80 205 164 HOH HOH A . D 3 HOH 81 206 165 HOH HOH A . D 3 HOH 82 207 168 HOH HOH A . D 3 HOH 83 208 169 HOH HOH A . D 3 HOH 84 209 171 HOH HOH A . D 3 HOH 85 210 174 HOH HOH A . D 3 HOH 86 211 177 HOH HOH A . D 3 HOH 87 212 178 HOH HOH A . D 3 HOH 88 213 180 HOH HOH A . D 3 HOH 89 214 182 HOH HOH A . D 3 HOH 90 215 184 HOH HOH A . D 3 HOH 91 216 187 HOH HOH A . D 3 HOH 92 217 190 HOH HOH A . D 3 HOH 93 218 192 HOH HOH A . D 3 HOH 94 219 194 HOH HOH A . D 3 HOH 95 220 196 HOH HOH A . D 3 HOH 96 221 200 HOH HOH A . D 3 HOH 97 222 201 HOH HOH A . D 3 HOH 98 223 202 HOH HOH A . D 3 HOH 99 224 204 HOH HOH A . D 3 HOH 100 225 205 HOH HOH A . D 3 HOH 101 226 211 HOH HOH A . D 3 HOH 102 227 215 HOH HOH A . D 3 HOH 103 228 216 HOH HOH A . D 3 HOH 104 229 217 HOH HOH A . D 3 HOH 105 230 218 HOH HOH A . D 3 HOH 106 231 219 HOH HOH A . D 3 HOH 107 232 221 HOH HOH A . D 3 HOH 108 233 223 HOH HOH A . D 3 HOH 109 234 225 HOH HOH A . D 3 HOH 110 235 226 HOH HOH A . D 3 HOH 111 236 227 HOH HOH A . D 3 HOH 112 237 228 HOH HOH A . D 3 HOH 113 238 229 HOH HOH A . D 3 HOH 114 239 231 HOH HOH A . D 3 HOH 115 240 232 HOH HOH A . D 3 HOH 116 241 233 HOH HOH A . D 3 HOH 117 242 236 HOH HOH A . D 3 HOH 118 243 239 HOH HOH A . D 3 HOH 119 244 242 HOH HOH A . D 3 HOH 120 245 243 HOH HOH A . D 3 HOH 121 246 244 HOH HOH A . D 3 HOH 122 247 245 HOH HOH A . D 3 HOH 123 248 246 HOH HOH A . D 3 HOH 124 249 247 HOH HOH A . D 3 HOH 125 250 248 HOH HOH A . D 3 HOH 126 251 250 HOH HOH A . D 3 HOH 127 252 251 HOH HOH A . D 3 HOH 128 253 252 HOH HOH A . D 3 HOH 129 254 253 HOH HOH A . D 3 HOH 130 255 268 HOH HOH A . D 3 HOH 131 256 269 HOH HOH A . D 3 HOH 132 257 270 HOH HOH A . D 3 HOH 133 258 271 HOH HOH A . D 3 HOH 134 259 275 HOH HOH A . D 3 HOH 135 260 276 HOH HOH A . D 3 HOH 136 261 278 HOH HOH A . D 3 HOH 137 262 279 HOH HOH A . D 3 HOH 138 263 280 HOH HOH A . D 3 HOH 139 264 281 HOH HOH A . D 3 HOH 140 265 282 HOH HOH A . D 3 HOH 141 266 283 HOH HOH A . D 3 HOH 142 267 286 HOH HOH A . D 3 HOH 143 268 288 HOH HOH A . D 3 HOH 144 269 289 HOH HOH A . D 3 HOH 145 270 293 HOH HOH A . D 3 HOH 146 271 303 HOH HOH A . D 3 HOH 147 272 304 HOH HOH A . D 3 HOH 148 273 305 HOH HOH A . D 3 HOH 149 274 309 HOH HOH A . D 3 HOH 150 275 310 HOH HOH A . D 3 HOH 151 276 314 HOH HOH A . D 3 HOH 152 277 315 HOH HOH A . D 3 HOH 153 278 316 HOH HOH A . D 3 HOH 154 279 317 HOH HOH A . D 3 HOH 155 280 318 HOH HOH A . D 3 HOH 156 281 319 HOH HOH A . D 3 HOH 157 282 320 HOH HOH A . D 3 HOH 158 283 321 HOH HOH A . D 3 HOH 159 284 322 HOH HOH A . D 3 HOH 160 285 323 HOH HOH A . D 3 HOH 161 286 324 HOH HOH A . D 3 HOH 162 287 325 HOH HOH A . D 3 HOH 163 288 326 HOH HOH A . D 3 HOH 164 289 328 HOH HOH A . E 3 HOH 1 125 2 HOH HOH B . E 3 HOH 2 126 3 HOH HOH B . E 3 HOH 3 127 5 HOH HOH B . E 3 HOH 4 128 6 HOH HOH B . E 3 HOH 5 129 8 HOH HOH B . E 3 HOH 6 130 9 HOH HOH B . E 3 HOH 7 131 12 HOH HOH B . E 3 HOH 8 132 13 HOH HOH B . E 3 HOH 9 133 14 HOH HOH B . E 3 HOH 10 134 15 HOH HOH B . E 3 HOH 11 135 17 HOH HOH B . E 3 HOH 12 136 18 HOH HOH B . E 3 HOH 13 137 24 HOH HOH B . E 3 HOH 14 138 27 HOH HOH B . E 3 HOH 15 139 28 HOH HOH B . E 3 HOH 16 140 30 HOH HOH B . E 3 HOH 17 141 31 HOH HOH B . E 3 HOH 18 142 32 HOH HOH B . E 3 HOH 19 143 34 HOH HOH B . E 3 HOH 20 144 35 HOH HOH B . E 3 HOH 21 145 36 HOH HOH B . E 3 HOH 22 146 39 HOH HOH B . E 3 HOH 23 147 41 HOH HOH B . E 3 HOH 24 148 44 HOH HOH B . E 3 HOH 25 149 45 HOH HOH B . E 3 HOH 26 150 48 HOH HOH B . E 3 HOH 27 151 49 HOH HOH B . E 3 HOH 28 152 50 HOH HOH B . E 3 HOH 29 153 52 HOH HOH B . E 3 HOH 30 154 53 HOH HOH B . E 3 HOH 31 155 55 HOH HOH B . E 3 HOH 32 156 56 HOH HOH B . E 3 HOH 33 157 57 HOH HOH B . E 3 HOH 34 158 58 HOH HOH B . E 3 HOH 35 159 60 HOH HOH B . E 3 HOH 36 160 61 HOH HOH B . E 3 HOH 37 161 62 HOH HOH B . E 3 HOH 38 162 63 HOH HOH B . E 3 HOH 39 163 65 HOH HOH B . E 3 HOH 40 164 67 HOH HOH B . E 3 HOH 41 165 69 HOH HOH B . E 3 HOH 42 166 70 HOH HOH B . E 3 HOH 43 167 71 HOH HOH B . E 3 HOH 44 168 79 HOH HOH B . E 3 HOH 45 169 80 HOH HOH B . E 3 HOH 46 170 87 HOH HOH B . E 3 HOH 47 171 88 HOH HOH B . E 3 HOH 48 172 89 HOH HOH B . E 3 HOH 49 173 91 HOH HOH B . E 3 HOH 50 174 92 HOH HOH B . E 3 HOH 51 175 96 HOH HOH B . E 3 HOH 52 176 99 HOH HOH B . E 3 HOH 53 177 101 HOH HOH B . E 3 HOH 54 178 105 HOH HOH B . E 3 HOH 55 179 107 HOH HOH B . E 3 HOH 56 180 108 HOH HOH B . E 3 HOH 57 181 109 HOH HOH B . E 3 HOH 58 182 110 HOH HOH B . E 3 HOH 59 183 115 HOH HOH B . E 3 HOH 60 184 116 HOH HOH B . E 3 HOH 61 185 117 HOH HOH B . E 3 HOH 62 186 118 HOH HOH B . E 3 HOH 63 187 120 HOH HOH B . E 3 HOH 64 188 121 HOH HOH B . E 3 HOH 65 189 124 HOH HOH B . E 3 HOH 66 190 127 HOH HOH B . E 3 HOH 67 191 128 HOH HOH B . E 3 HOH 68 192 132 HOH HOH B . E 3 HOH 69 193 133 HOH HOH B . E 3 HOH 70 194 134 HOH HOH B . E 3 HOH 71 195 136 HOH HOH B . E 3 HOH 72 196 137 HOH HOH B . E 3 HOH 73 197 138 HOH HOH B . E 3 HOH 74 198 143 HOH HOH B . E 3 HOH 75 199 144 HOH HOH B . E 3 HOH 76 200 145 HOH HOH B . E 3 HOH 77 201 147 HOH HOH B . E 3 HOH 78 202 148 HOH HOH B . E 3 HOH 79 203 151 HOH HOH B . E 3 HOH 80 204 152 HOH HOH B . E 3 HOH 81 205 155 HOH HOH B . E 3 HOH 82 206 156 HOH HOH B . E 3 HOH 83 207 158 HOH HOH B . E 3 HOH 84 208 166 HOH HOH B . E 3 HOH 85 209 167 HOH HOH B . E 3 HOH 86 210 170 HOH HOH B . E 3 HOH 87 211 172 HOH HOH B . E 3 HOH 88 212 173 HOH HOH B . E 3 HOH 89 213 175 HOH HOH B . E 3 HOH 90 214 176 HOH HOH B . E 3 HOH 91 215 179 HOH HOH B . E 3 HOH 92 216 181 HOH HOH B . E 3 HOH 93 217 183 HOH HOH B . E 3 HOH 94 218 185 HOH HOH B . E 3 HOH 95 219 186 HOH HOH B . E 3 HOH 96 220 188 HOH HOH B . E 3 HOH 97 221 189 HOH HOH B . E 3 HOH 98 222 191 HOH HOH B . E 3 HOH 99 223 193 HOH HOH B . E 3 HOH 100 224 195 HOH HOH B . E 3 HOH 101 225 197 HOH HOH B . E 3 HOH 102 226 198 HOH HOH B . E 3 HOH 103 227 199 HOH HOH B . E 3 HOH 104 228 203 HOH HOH B . E 3 HOH 105 229 206 HOH HOH B . E 3 HOH 106 230 208 HOH HOH B . E 3 HOH 107 231 209 HOH HOH B . E 3 HOH 108 232 210 HOH HOH B . E 3 HOH 109 233 212 HOH HOH B . E 3 HOH 110 234 213 HOH HOH B . E 3 HOH 111 235 220 HOH HOH B . E 3 HOH 112 236 222 HOH HOH B . E 3 HOH 113 237 224 HOH HOH B . E 3 HOH 114 238 230 HOH HOH B . E 3 HOH 115 239 234 HOH HOH B . E 3 HOH 116 240 249 HOH HOH B . E 3 HOH 117 241 254 HOH HOH B . E 3 HOH 118 242 255 HOH HOH B . E 3 HOH 119 243 256 HOH HOH B . E 3 HOH 120 244 257 HOH HOH B . E 3 HOH 121 245 258 HOH HOH B . E 3 HOH 122 246 259 HOH HOH B . E 3 HOH 123 247 260 HOH HOH B . E 3 HOH 124 248 261 HOH HOH B . E 3 HOH 125 249 262 HOH HOH B . E 3 HOH 126 250 263 HOH HOH B . E 3 HOH 127 251 264 HOH HOH B . E 3 HOH 128 252 265 HOH HOH B . E 3 HOH 129 253 266 HOH HOH B . E 3 HOH 130 254 267 HOH HOH B . E 3 HOH 131 255 272 HOH HOH B . E 3 HOH 132 256 273 HOH HOH B . E 3 HOH 133 257 274 HOH HOH B . E 3 HOH 134 258 284 HOH HOH B . E 3 HOH 135 259 285 HOH HOH B . E 3 HOH 136 260 287 HOH HOH B . E 3 HOH 137 261 290 HOH HOH B . E 3 HOH 138 262 291 HOH HOH B . E 3 HOH 139 263 294 HOH HOH B . E 3 HOH 140 264 295 HOH HOH B . E 3 HOH 141 265 296 HOH HOH B . E 3 HOH 142 266 297 HOH HOH B . E 3 HOH 143 267 298 HOH HOH B . E 3 HOH 144 268 300 HOH HOH B . E 3 HOH 145 269 301 HOH HOH B . E 3 HOH 146 270 312 HOH HOH B . E 3 HOH 147 271 313 HOH HOH B . E 3 HOH 148 272 327 HOH HOH B . E 3 HOH 149 273 329 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D 2 1 B,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 204 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 33.1809 15.1904 12.2192 0.3057 -0.0444 0.0027 -0.1196 0.0980 -0.0100 12.5682 1.6192 10.8036 -1.4086 -1.1011 1.5838 0.1855 -0.1401 1.0810 -0.4798 0.3336 -0.2135 -1.9224 0.5689 -0.5192 'X-RAY DIFFRACTION' 2 ? refined 30.0018 5.9140 8.2966 0.0652 0.0387 -0.0142 -0.0078 0.0249 0.0205 3.9000 3.6313 7.2049 -0.1235 0.8219 1.0334 0.0794 0.1737 0.0169 -0.0733 0.0323 -0.1054 -0.2574 0.0245 -0.1116 'X-RAY DIFFRACTION' 3 ? refined 24.3663 -4.1723 -1.3673 0.0431 0.2454 0.0452 0.0185 -0.0726 -0.1605 12.9130 24.1925 22.1524 -11.8290 -16.7712 13.1393 -0.5688 0.4580 -0.9540 0.8573 -0.6747 1.4098 1.0580 -1.1129 1.2435 'X-RAY DIFFRACTION' 4 ? refined 33.7692 0.1388 -2.9365 0.0467 0.1246 -0.0704 -0.0069 0.0244 -0.0313 4.2811 12.3091 5.8523 1.2004 -0.9277 5.5707 0.1087 0.6380 -0.1278 -0.6964 -0.0934 0.1875 -0.3360 -0.2902 -0.0153 'X-RAY DIFFRACTION' 5 ? refined 41.0198 5.1513 2.9816 0.0401 0.0454 0.0401 -0.0854 0.0779 -0.0662 9.9091 4.7863 2.2185 -4.2327 -4.3309 0.8653 0.1231 -0.3456 0.8562 -0.2370 0.1954 -0.8844 -0.3738 0.4217 -0.3186 'X-RAY DIFFRACTION' 6 ? refined 25.1418 0.8113 13.1519 0.0333 0.0388 0.0196 0.0005 -0.0014 0.0106 1.8189 0.5444 3.7844 0.2580 -0.7720 -0.6421 -0.0551 0.0736 -0.0424 -0.0900 0.0627 -0.0061 -0.0121 -0.1554 -0.0077 'X-RAY DIFFRACTION' 7 ? refined 30.1296 -1.6560 24.2737 0.0379 0.0379 0.0324 0.0044 0.0056 0.0071 5.1172 1.3987 2.6624 0.8023 1.1738 -0.3243 -0.0289 -0.0456 -0.1296 0.0143 0.0005 -0.1267 -0.1031 -0.0814 0.0284 'X-RAY DIFFRACTION' 8 ? refined 38.3938 -4.7162 2.1366 0.0580 0.0173 0.0519 -0.0071 0.0753 -0.0499 11.4915 0.4241 5.1535 1.9027 -6.2447 -1.2679 -0.3429 0.0741 -0.5972 -0.2014 0.0800 -0.3133 0.4650 0.2481 0.2630 'X-RAY DIFFRACTION' 9 ? refined 31.4312 -8.4603 3.8012 0.0902 0.0098 0.0156 -0.0247 0.0436 -0.0546 6.8394 1.1318 6.1986 2.6603 -6.0614 -2.0745 -0.4546 0.0654 -0.5063 -0.2669 0.1828 -0.2589 0.6484 -0.0337 0.2718 'X-RAY DIFFRACTION' 10 ? refined 29.3107 2.6403 18.8823 0.0419 0.0451 0.0205 0.0053 0.0041 0.0078 1.9007 2.8244 2.4279 0.1158 0.1637 0.3644 -0.0566 -0.0267 0.0480 -0.0650 0.0583 -0.0665 -0.0377 -0.1738 -0.0017 'X-RAY DIFFRACTION' 11 ? refined 16.2359 -4.9029 30.3931 0.0118 0.0545 0.0386 -0.0046 0.0122 -0.0103 4.1254 2.9086 4.5078 0.1068 1.4858 0.2561 0.0006 0.2089 -0.1720 0.0900 0.1690 -0.1059 0.1466 0.1011 -0.1696 'X-RAY DIFFRACTION' 12 ? refined 10.9958 10.7944 21.9112 -0.0187 0.3208 0.5355 0.0132 0.0729 0.0683 30.1823 25.8411 9.3035 -27.9274 16.7571 -15.5052 0.7327 1.3245 -1.9534 0.4056 0.2275 0.9852 -1.0434 1.0249 -0.9602 'X-RAY DIFFRACTION' 13 ? refined 8.7258 1.5930 18.3590 0.1040 0.1410 -0.0951 0.0061 -0.0295 0.0618 0.5460 15.2211 3.6025 -2.3545 0.4503 2.1047 0.2125 0.3895 0.0267 -1.2112 -0.2845 -0.0461 -0.1565 0.4853 0.0720 'X-RAY DIFFRACTION' 14 ? refined 9.6565 -8.3087 20.6295 0.0422 0.0706 0.0167 0.0104 0.0217 -0.0788 15.7157 10.0551 2.9992 2.1294 3.5959 0.8840 0.2369 0.6493 -1.2549 -0.7639 -0.3362 0.2459 0.2850 0.0329 0.0993 'X-RAY DIFFRACTION' 15 ? refined 12.5000 2.4964 32.5061 0.0285 0.0337 0.0461 -0.0087 0.0056 0.0125 2.3642 1.4717 1.8688 0.2423 1.3242 1.1456 -0.0731 0.1507 0.0702 -0.1469 0.0181 0.0512 -0.0496 0.0412 0.0550 'X-RAY DIFFRACTION' 16 ? refined 8.0283 -2.3759 46.7441 0.0157 0.0276 0.0529 -0.0062 0.0011 0.0388 7.0228 8.7976 1.1656 5.4598 0.6714 2.4153 -0.0517 -0.2029 -0.2044 0.1623 0.0285 0.3698 0.2095 -0.0872 0.0232 'X-RAY DIFFRACTION' 17 ? refined 9.5161 5.7751 39.6000 0.0218 0.0279 0.0540 0.0067 -0.0241 0.0134 0.7663 0.8675 1.1572 0.6285 -0.1359 0.5201 -0.0326 0.0038 0.0791 -0.0936 -0.0586 0.0869 -0.0665 -0.0552 0.0912 'X-RAY DIFFRACTION' 18 ? refined -1.0141 -4.9203 17.8033 0.0644 0.0359 0.0429 0.0043 -0.0545 -0.0973 4.1863 2.9147 7.7265 -2.1954 0.0206 1.6542 -0.0041 0.7446 -0.5438 -0.5591 -0.3725 0.4999 0.2883 -0.3847 0.3766 'X-RAY DIFFRACTION' 19 ? refined 5.5672 5.2163 32.0645 0.0518 0.0338 0.0654 0.0077 -0.0449 0.0232 0.8301 0.9483 1.2493 0.2054 0.3698 0.5841 -0.0927 0.0963 0.1325 -0.1811 -0.0020 0.1683 -0.2537 -0.1290 0.0947 'X-RAY DIFFRACTION' 20 ? refined 13.5757 -3.1253 40.1399 0.0388 0.0275 0.0422 -0.0238 0.0021 0.0131 5.7105 2.6605 2.8314 -1.8322 1.0615 -0.6981 0.0445 0.0364 -0.1908 -0.0734 -0.0250 0.1102 0.1070 0.0720 -0.0194 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 1 A 6 A 6 ? 'X-RAY DIFFRACTION' ? 2 2 A 7 A 7 A 15 A 15 ? 'X-RAY DIFFRACTION' ? 3 3 A 16 A 16 A 23 A 23 ? 'X-RAY DIFFRACTION' ? 4 4 A 24 A 24 A 32 A 32 ? 'X-RAY DIFFRACTION' ? 5 5 A 33 A 33 A 41 A 41 ? 'X-RAY DIFFRACTION' ? 6 6 A 42 A 42 A 61 A 61 ? 'X-RAY DIFFRACTION' ? 7 7 A 62 A 62 A 77 A 77 ? 'X-RAY DIFFRACTION' ? 8 8 A 78 A 78 A 95 A 95 ? 'X-RAY DIFFRACTION' ? 9 9 A 96 A 96 A 104 A 104 ? 'X-RAY DIFFRACTION' ? 10 10 A 105 A 105 A 124 A 124 ? 'X-RAY DIFFRACTION' ? 11 11 B 1 B 1 B 15 B 15 ? 'X-RAY DIFFRACTION' ? 12 12 B 16 B 16 B 23 B 23 ? 'X-RAY DIFFRACTION' ? 13 13 B 24 B 24 B 31 B 31 ? 'X-RAY DIFFRACTION' ? 14 14 B 32 B 32 B 39 B 39 ? 'X-RAY DIFFRACTION' ? 15 15 B 40 B 40 B 58 B 58 ? 'X-RAY DIFFRACTION' ? 16 16 B 59 B 59 B 70 B 70 ? 'X-RAY DIFFRACTION' ? 17 17 B 71 B 71 B 83 B 83 ? 'X-RAY DIFFRACTION' ? 18 18 B 84 B 84 B 96 B 96 ? 'X-RAY DIFFRACTION' ? 19 19 B 97 B 97 B 110 B 110 ? 'X-RAY DIFFRACTION' ? 20 20 B 111 B 111 B 124 B 124 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.3.0037 ? 1 ADSC 'data collection' Quantum ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 REFMAC phasing 5.3 ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 59 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 215 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.05 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 SER _pdbx_validate_rmsd_bond.auth_seq_id_1 23 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 ASN _pdbx_validate_rmsd_bond.auth_seq_id_2 24 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.533 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation 0.197 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 19 ? ? -174.21 -78.85 2 1 ALA A 20 ? ? 11.14 -86.69 3 1 SER A 21 ? ? 60.50 106.41 4 1 HIS A 48 ? ? -102.55 62.38 5 1 GLN A 60 ? ? -97.94 -136.60 6 1 HIS B 48 ? ? -111.26 58.78 7 1 GLN B 60 ? ? -107.51 -130.13 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A U1S 125 ? C15 ? C U1S 1 C15 2 1 N 1 A U1S 125 ? C16 ? C U1S 1 C16 3 1 N 1 A U1S 125 ? O6 ? C U1S 1 O6 4 1 N 1 A U1S 125 ? C17 ? C U1S 1 C17 5 1 N 1 A U1S 125 ? O7 ? C U1S 1 O7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TYR N N N N 321 TYR CA C N S 322 TYR C C N N 323 TYR O O N N 324 TYR CB C N N 325 TYR CG C Y N 326 TYR CD1 C Y N 327 TYR CD2 C Y N 328 TYR CE1 C Y N 329 TYR CE2 C Y N 330 TYR CZ C Y N 331 TYR OH O N N 332 TYR OXT O N N 333 TYR H H N N 334 TYR H2 H N N 335 TYR HA H N N 336 TYR HB2 H N N 337 TYR HB3 H N N 338 TYR HD1 H N N 339 TYR HD2 H N N 340 TYR HE1 H N N 341 TYR HE2 H N N 342 TYR HH H N N 343 TYR HXT H N N 344 U1S C4 C N N 345 U1S C5 C N N 346 U1S C6 C N N 347 U1S N1 N N N 348 U1S N3 N N N 349 U1S CAV C N N 350 U1S CAK C N N 351 U1S CAM C N N 352 U1S CAJ C N N 353 U1S CAL C N N 354 U1S NBA N N N 355 U1S "C5'" C N N 356 U1S "C4'" C N S 357 U1S "O4'" O N N 358 U1S "C3'" C N R 359 U1S "O3'" O N N 360 U1S "C2'" C N R 361 U1S "O2'" O N N 362 U1S "C1'" C N R 363 U1S O4 O N N 364 U1S C2 C N N 365 U1S O2 O N N 366 U1S H5 H N N 367 U1S H6 H N N 368 U1S HN3 H N N 369 U1S C15 C N N 370 U1S HAV H N N 371 U1S HAK H N N 372 U1S HAKA H N N 373 U1S HAM H N N 374 U1S HAMA H N N 375 U1S HAJ H N N 376 U1S HAJA H N N 377 U1S HAL H N N 378 U1S HALA H N N 379 U1S "H5'" H N N 380 U1S "H5'A" H N N 381 U1S "H4'" H N N 382 U1S "H3'" H N N 383 U1S "HO3'" H N N 384 U1S "H2'" H N N 385 U1S "HO2'" H N N 386 U1S "H1'" H N N 387 U1S C16 C N N 388 U1S O6 O N N 389 U1S C17 C N N 390 U1S O7 O N N 391 U1S H21 H N N 392 U1S H22 H N N 393 U1S H23 H N N 394 U1S H24 H N N 395 U1S H25 H N N 396 VAL N N N N 397 VAL CA C N S 398 VAL C C N N 399 VAL O O N N 400 VAL CB C N N 401 VAL CG1 C N N 402 VAL CG2 C N N 403 VAL OXT O N N 404 VAL H H N N 405 VAL H2 H N N 406 VAL HA H N N 407 VAL HB H N N 408 VAL HG11 H N N 409 VAL HG12 H N N 410 VAL HG13 H N N 411 VAL HG21 H N N 412 VAL HG22 H N N 413 VAL HG23 H N N 414 VAL HXT H N N 415 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TYR N CA sing N N 306 TYR N H sing N N 307 TYR N H2 sing N N 308 TYR CA C sing N N 309 TYR CA CB sing N N 310 TYR CA HA sing N N 311 TYR C O doub N N 312 TYR C OXT sing N N 313 TYR CB CG sing N N 314 TYR CB HB2 sing N N 315 TYR CB HB3 sing N N 316 TYR CG CD1 doub Y N 317 TYR CG CD2 sing Y N 318 TYR CD1 CE1 sing Y N 319 TYR CD1 HD1 sing N N 320 TYR CD2 CE2 doub Y N 321 TYR CD2 HD2 sing N N 322 TYR CE1 CZ doub Y N 323 TYR CE1 HE1 sing N N 324 TYR CE2 CZ sing Y N 325 TYR CE2 HE2 sing N N 326 TYR CZ OH sing N N 327 TYR OH HH sing N N 328 TYR OXT HXT sing N N 329 U1S C4 C5 sing N N 330 U1S C4 N3 sing N N 331 U1S C4 O4 doub N N 332 U1S C5 C6 doub N N 333 U1S C5 H5 sing N N 334 U1S C6 N1 sing N N 335 U1S C6 H6 sing N N 336 U1S N1 "C1'" sing N N 337 U1S N1 C2 sing N N 338 U1S N3 C2 sing N N 339 U1S N3 HN3 sing N N 340 U1S CAV CAK sing N N 341 U1S CAV CAJ sing N N 342 U1S CAV C17 sing N N 343 U1S CAV HAV sing N N 344 U1S CAK CAM sing N N 345 U1S CAK HAK sing N N 346 U1S CAK HAKA sing N N 347 U1S CAM NBA sing N N 348 U1S CAM HAM sing N N 349 U1S CAM HAMA sing N N 350 U1S CAJ CAL sing N N 351 U1S CAJ HAJ sing N N 352 U1S CAJ HAJA sing N N 353 U1S CAL NBA sing N N 354 U1S CAL HAL sing N N 355 U1S CAL HALA sing N N 356 U1S NBA "C5'" sing N N 357 U1S "C5'" "C4'" sing N N 358 U1S "C5'" "H5'" sing N N 359 U1S "C5'" "H5'A" sing N N 360 U1S "C4'" "O4'" sing N N 361 U1S "C4'" "C3'" sing N N 362 U1S "C4'" "H4'" sing N N 363 U1S "O4'" "C1'" sing N N 364 U1S "C3'" "O3'" sing N N 365 U1S "C3'" "C2'" sing N N 366 U1S "C3'" "H3'" sing N N 367 U1S "O3'" "HO3'" sing N N 368 U1S "C2'" "O2'" sing N N 369 U1S "C2'" "C1'" sing N N 370 U1S "C2'" "H2'" sing N N 371 U1S "O2'" "HO2'" sing N N 372 U1S "C1'" "H1'" sing N N 373 U1S C2 O2 doub N N 374 U1S C15 C16 sing N N 375 U1S C16 O6 sing N N 376 U1S O6 C17 sing N N 377 U1S C17 O7 doub N N 378 U1S C15 H21 sing N N 379 U1S C15 H22 sing N N 380 U1S C15 H23 sing N N 381 U1S C16 H24 sing N N 382 U1S C16 H25 sing N N 383 VAL N CA sing N N 384 VAL N H sing N N 385 VAL N H2 sing N N 386 VAL CA C sing N N 387 VAL CA CB sing N N 388 VAL CA HA sing N N 389 VAL C O doub N N 390 VAL C OXT sing N N 391 VAL CB CG1 sing N N 392 VAL CB CG2 sing N N 393 VAL CB HB sing N N 394 VAL CG1 HG11 sing N N 395 VAL CG1 HG12 sing N N 396 VAL CG1 HG13 sing N N 397 VAL CG2 HG21 sing N N 398 VAL CG2 HG22 sing N N 399 VAL CG2 HG23 sing N N 400 VAL OXT HXT sing N N 401 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1-{5-deoxy-5-[4-(ethoxycarbonyl)piperidin-1-yl]-alpha-L-arabinofuranosyl}pyrimidine-2,4(1H,3H)-dione' U1S 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2G8Q _pdbx_initial_refinement_model.details 'PDB entry 2G8Q' #