data_3D6Y # _entry.id 3D6Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3D6Y pdb_00003d6y 10.2210/pdb3d6y/pdb NDB PD1143 ? ? RCSB RCSB047669 ? ? WWPDB D_1000047669 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1R8E 'wtBmrR bound to DNA at 2.4 resolution' unspecified PDB 1EXJ 'wtBmrR bound to DNA and TPP' unspecified PDB 1BOW 'c-terminal fragment of BmrR' unspecified PDB 2BOW 'c-terminal fragment of BmrR bound to TPP' unspecified PDB 3D6Z 'R275E BmrR bound to DNA and Rhodamine 6G' unspecified PDB 3D70 'E253A BmrR bound to DNA' unspecified PDB 3D71 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3D6Y _pdbx_database_status.recvd_initial_deposition_date 2008-05-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Newberry, K.J.' 1 'Brennan, R.G.' 2 # _citation.id primary _citation.title 'Structures of BmrR-Drug Complexes Reveal a Rigid Multidrug Binding Pocket and Transcription Activation through Tyrosine Expulsion' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 283 _citation.page_first 26795 _citation.page_last 26804 _citation.year 2008 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18658145 _citation.pdbx_database_id_DOI 10.1074/jbc.M804191200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Newberry, K.J.' 1 ? primary 'Huffman, J.L.' 2 ? primary 'Miller, M.C.' 3 ? primary 'Vazquez-Laslop, N.' 4 ? primary 'Neyfakh, A.A.' 5 ? primary 'Brennan, R.G.' 6 ? # _cell.entry_id 3D6Y _cell.length_a 106.330 _cell.length_b 106.330 _cell.length_c 146.750 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D6Y _symmetry.space_group_name_H-M 'P 43 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'BMR promoter DNA' 7362.729 1 ? ? ? ? 2 polymer man 'Multidrug-efflux transporter 1 regulator' 33450.121 1 ? 'R275E, A277L, E278D' 'residues 1-278' ? 3 non-polymer syn BERBERINE 336.361 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 5 water nat water 18.015 34 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DT)(DG)(DA)(DC)(DC)(DC)(DT)(DC)(DC)(DC)(DC)(DT)(DT)(DA)(DG)(DG)(DG)(DG)(DA)(DG) (DG)(DG)(DT)(DC) ; TGACCCTCCCCTTAGGGGAGGGTC B ? 2 'polypeptide(L)' no no ;MKESYYSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEEL FAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQMEYPALGEVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIE SADGFTNNSYGATFSFQPYTSIDEMTYRHIFTPVLTNKQISSITPDMEITTIPKGRYACIAYNFSPEHYFLNLQKLIKYI ADRQLTVVSDVYELIIPIHYSPKKQEEYRVEMKIEILDHHHHHH ; ;MKESYYSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEEL FAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQMEYPALGEVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIE SADGFTNNSYGATFSFQPYTSIDEMTYRHIFTPVLTNKQISSITPDMEITTIPKGRYACIAYNFSPEHYFLNLQKLIKYI ADRQLTVVSDVYELIIPIHYSPKKQEEYRVEMKIEILDHHHHHH ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DA n 1 4 DC n 1 5 DC n 1 6 DC n 1 7 DT n 1 8 DC n 1 9 DC n 1 10 DC n 1 11 DC n 1 12 DT n 1 13 DT n 1 14 DA n 1 15 DG n 1 16 DG n 1 17 DG n 1 18 DG n 1 19 DA n 1 20 DG n 1 21 DG n 1 22 DG n 1 23 DT n 1 24 DC n 2 1 MET n 2 2 LYS n 2 3 GLU n 2 4 SER n 2 5 TYR n 2 6 TYR n 2 7 SER n 2 8 ILE n 2 9 GLY n 2 10 GLU n 2 11 VAL n 2 12 SER n 2 13 LYS n 2 14 LEU n 2 15 ALA n 2 16 ASN n 2 17 VAL n 2 18 SER n 2 19 ILE n 2 20 LYS n 2 21 ALA n 2 22 LEU n 2 23 ARG n 2 24 TYR n 2 25 TYR n 2 26 ASP n 2 27 LYS n 2 28 ILE n 2 29 ASP n 2 30 LEU n 2 31 PHE n 2 32 LYS n 2 33 PRO n 2 34 ALA n 2 35 TYR n 2 36 VAL n 2 37 ASP n 2 38 PRO n 2 39 ASP n 2 40 THR n 2 41 SER n 2 42 TYR n 2 43 ARG n 2 44 TYR n 2 45 TYR n 2 46 THR n 2 47 ASP n 2 48 SER n 2 49 GLN n 2 50 LEU n 2 51 ILE n 2 52 HIS n 2 53 LEU n 2 54 ASP n 2 55 LEU n 2 56 ILE n 2 57 LYS n 2 58 SER n 2 59 LEU n 2 60 LYS n 2 61 TYR n 2 62 ILE n 2 63 GLY n 2 64 THR n 2 65 PRO n 2 66 LEU n 2 67 GLU n 2 68 GLU n 2 69 MET n 2 70 LYS n 2 71 LYS n 2 72 ALA n 2 73 GLN n 2 74 ASP n 2 75 LEU n 2 76 GLU n 2 77 MET n 2 78 GLU n 2 79 GLU n 2 80 LEU n 2 81 PHE n 2 82 ALA n 2 83 PHE n 2 84 TYR n 2 85 THR n 2 86 GLU n 2 87 GLN n 2 88 GLU n 2 89 ARG n 2 90 GLN n 2 91 ILE n 2 92 ARG n 2 93 GLU n 2 94 LYS n 2 95 LEU n 2 96 ASP n 2 97 PHE n 2 98 LEU n 2 99 SER n 2 100 ALA n 2 101 LEU n 2 102 GLU n 2 103 GLN n 2 104 THR n 2 105 ILE n 2 106 SER n 2 107 LEU n 2 108 VAL n 2 109 LYS n 2 110 LYS n 2 111 ARG n 2 112 MET n 2 113 LYS n 2 114 ARG n 2 115 GLN n 2 116 MET n 2 117 GLU n 2 118 TYR n 2 119 PRO n 2 120 ALA n 2 121 LEU n 2 122 GLY n 2 123 GLU n 2 124 VAL n 2 125 PHE n 2 126 VAL n 2 127 LEU n 2 128 ASP n 2 129 GLU n 2 130 GLU n 2 131 GLU n 2 132 ILE n 2 133 ARG n 2 134 ILE n 2 135 ILE n 2 136 GLN n 2 137 THR n 2 138 GLU n 2 139 ALA n 2 140 GLU n 2 141 GLY n 2 142 ILE n 2 143 GLY n 2 144 PRO n 2 145 GLU n 2 146 ASN n 2 147 VAL n 2 148 LEU n 2 149 ASN n 2 150 ALA n 2 151 SER n 2 152 TYR n 2 153 SER n 2 154 LYS n 2 155 LEU n 2 156 LYS n 2 157 LYS n 2 158 PHE n 2 159 ILE n 2 160 GLU n 2 161 SER n 2 162 ALA n 2 163 ASP n 2 164 GLY n 2 165 PHE n 2 166 THR n 2 167 ASN n 2 168 ASN n 2 169 SER n 2 170 TYR n 2 171 GLY n 2 172 ALA n 2 173 THR n 2 174 PHE n 2 175 SER n 2 176 PHE n 2 177 GLN n 2 178 PRO n 2 179 TYR n 2 180 THR n 2 181 SER n 2 182 ILE n 2 183 ASP n 2 184 GLU n 2 185 MET n 2 186 THR n 2 187 TYR n 2 188 ARG n 2 189 HIS n 2 190 ILE n 2 191 PHE n 2 192 THR n 2 193 PRO n 2 194 VAL n 2 195 LEU n 2 196 THR n 2 197 ASN n 2 198 LYS n 2 199 GLN n 2 200 ILE n 2 201 SER n 2 202 SER n 2 203 ILE n 2 204 THR n 2 205 PRO n 2 206 ASP n 2 207 MET n 2 208 GLU n 2 209 ILE n 2 210 THR n 2 211 THR n 2 212 ILE n 2 213 PRO n 2 214 LYS n 2 215 GLY n 2 216 ARG n 2 217 TYR n 2 218 ALA n 2 219 CYS n 2 220 ILE n 2 221 ALA n 2 222 TYR n 2 223 ASN n 2 224 PHE n 2 225 SER n 2 226 PRO n 2 227 GLU n 2 228 HIS n 2 229 TYR n 2 230 PHE n 2 231 LEU n 2 232 ASN n 2 233 LEU n 2 234 GLN n 2 235 LYS n 2 236 LEU n 2 237 ILE n 2 238 LYS n 2 239 TYR n 2 240 ILE n 2 241 ALA n 2 242 ASP n 2 243 ARG n 2 244 GLN n 2 245 LEU n 2 246 THR n 2 247 VAL n 2 248 VAL n 2 249 SER n 2 250 ASP n 2 251 VAL n 2 252 TYR n 2 253 GLU n 2 254 LEU n 2 255 ILE n 2 256 ILE n 2 257 PRO n 2 258 ILE n 2 259 HIS n 2 260 TYR n 2 261 SER n 2 262 PRO n 2 263 LYS n 2 264 LYS n 2 265 GLN n 2 266 GLU n 2 267 GLU n 2 268 TYR n 2 269 ARG n 2 270 VAL n 2 271 GLU n 2 272 MET n 2 273 LYS n 2 274 ILE n 2 275 GLU n 2 276 ILE n 2 277 LEU n 2 278 ASP n 2 279 HIS n 2 280 HIS n 2 281 HIS n 2 282 HIS n 2 283 HIS n 2 284 HIS n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'bmrR, bmr1R' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBAD _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP BMRR_BACSU P39075 2 ;MKESYYSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEEL FAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQMEYPALGEVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIE SADGFTNNSYGATFSFQPYTSIDEMTYRHIFTPVLTNKQISSITPDMEITTIPKGRYACIAYNFSPEHYFLNLQKLIKYI ADRQLTVVSDVYELIIPIHYSPKKQEEYRVEMKIRIAE ; 1 ? 2 PDB 3D6Y 3D6Y 1 TGACCCTCCCCTTAGGGGAGGGTC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3D6Y A 1 ? 278 ? P39075 1 ? 278 ? 1 278 2 2 3D6Y B 1 ? 24 ? 3D6Y -13 ? 12 ? -13 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3D6Y GLU A 275 ? UNP P39075 ARG 275 'engineered mutation' 275 1 1 3D6Y LEU A 277 ? UNP P39075 ALA 277 'engineered mutation' 277 2 1 3D6Y ASP A 278 ? UNP P39075 GLU 278 'engineered mutation' 278 3 1 3D6Y HIS A 279 ? UNP P39075 ? ? 'expression tag' 279 4 1 3D6Y HIS A 280 ? UNP P39075 ? ? 'expression tag' 280 5 1 3D6Y HIS A 281 ? UNP P39075 ? ? 'expression tag' 281 6 1 3D6Y HIS A 282 ? UNP P39075 ? ? 'expression tag' 282 7 1 3D6Y HIS A 283 ? UNP P39075 ? ? 'expression tag' 283 8 1 3D6Y HIS A 284 ? UNP P39075 ? ? 'expression tag' 284 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BER non-polymer . BERBERINE ? 'C20 H18 N O4 1' 336.361 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3D6Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 5.081581 _exptl_crystal.density_percent_sol 75.794937 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '1.0 M Sodium Malonate, 0.05% Jeffamine-M600, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'Sodium Malonate' ? ? ? 1 2 2 'Sodium Malonate' ? ? ? 1 3 1 Jeffamine-M600 ? ? ? 1 4 2 Jeffamine-M600 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-07-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9789 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9789 # _reflns.entry_id 3D6Y _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 86.10 _reflns.d_resolution_high 2.7 _reflns.number_obs 23429 _reflns.number_all ? _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value 0.057 _reflns.pdbx_netI_over_sigmaI 14.7 _reflns.B_iso_Wilson_estimate 78.6 _reflns.pdbx_redundancy 3.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.84 _reflns_shell.percent_possible_all 98.6 _reflns_shell.Rmerge_I_obs 0.647 _reflns_shell.pdbx_Rsym_value 0.544 _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy 3.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3331 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3D6Y _refine.ls_number_reflns_obs 23429 _refine.ls_number_reflns_all 23804 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1684928.69 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 86.10 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 98.3 _refine.ls_R_factor_obs 0.227 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.227 _refine.ls_R_factor_R_free 0.259 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 1132 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 82.5 _refine.aniso_B[1][1] 10.73 _refine.aniso_B[2][2] 10.73 _refine.aniso_B[3][3] -21.46 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 66.1095 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 'PDB entry 1R8D' _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3D6Y _refine_analyze.Luzzati_coordinate_error_obs 0.40 _refine_analyze.Luzzati_sigma_a_obs 0.48 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.50 _refine_analyze.Luzzati_sigma_a_free 0.57 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2288 _refine_hist.pdbx_number_atoms_nucleic_acid 488 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 34 _refine_hist.number_atoms_total 2847 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 86.10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.01 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 3.57 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 5.50 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 5.42 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 7.43 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.70 _refine_ls_shell.d_res_low 2.87 _refine_ls_shell.number_reflns_R_work 3637 _refine_ls_shell.R_factor_R_work 0.375 _refine_ls_shell.percent_reflns_obs 98.4 _refine_ls_shell.R_factor_R_free 0.406 _refine_ls_shell.R_factor_R_free_error 0.029 _refine_ls_shell.percent_reflns_R_free 5.0 _refine_ls_shell.number_reflns_R_free 190 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 dna-rna_rep.param ? 'X-RAY DIFFRACTION' 5 ligands_par.txt ligands_top.txt 'X-RAY DIFFRACTION' 4 ? dna-rna.top 'X-RAY DIFFRACTION' # _struct.entry_id 3D6Y _struct.title 'Crystal structure of R275E mutant of BMRR bound to DNA and berberine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D6Y _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR/DNA' _struct_keywords.text 'MULTIDRUG RESISTANCE, TRANSCRIPTION REGULATION, PROTEIN-DNA COMPLEX, Activator, DNA-binding, TRANSCRIPTION REGULATOR-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE B 8 ? ASN B 16 ? ILE A 8 ASN A 16 1 ? 9 HELX_P HELX_P2 2 SER B 18 ? ILE B 28 ? SER A 18 ILE A 28 1 ? 11 HELX_P HELX_P3 3 THR B 46 ? LEU B 50 ? THR A 46 LEU A 50 5 ? 5 HELX_P HELX_P4 4 ILE B 51 ? ILE B 62 ? ILE A 51 ILE A 62 1 ? 12 HELX_P HELX_P5 5 PRO B 65 ? GLN B 73 ? PRO A 65 GLN A 73 1 ? 9 HELX_P HELX_P6 6 MET B 77 ? GLU B 117 ? MET A 77 GLU A 117 1 ? 41 HELX_P HELX_P7 7 LEU B 148 ? SER B 151 ? LEU A 148 SER A 151 5 ? 4 HELX_P HELX_P8 8 TYR B 152 ? GLY B 164 ? TYR A 152 GLY A 164 1 ? 13 HELX_P HELX_P9 9 SER B 181 ? MET B 185 ? SER A 181 MET A 185 5 ? 5 HELX_P HELX_P10 10 SER B 225 ? ARG B 243 ? SER A 225 ARG A 243 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DT 23 N3 ? ? B DG -12 B DT 11 6_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog2 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 24 N3 ? ? B DG -12 B DC 12 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 24 O2 ? ? B DG -12 B DC 12 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 24 N4 ? ? B DG -12 B DC 12 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 23 N3 ? ? B DA -11 B DT 11 6_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog6 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 22 N1 ? ? B DC -10 B DG 10 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 22 O6 ? ? B DC -10 B DG 10 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 22 N2 ? ? B DC -10 B DG 10 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 21 N1 ? ? B DC -9 B DG 9 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 21 O6 ? ? B DC -9 B DG 9 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 21 N2 ? ? B DC -9 B DG 9 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 20 N1 ? ? B DC -8 B DG 8 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 20 O6 ? ? B DC -8 B DG 8 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 20 N2 ? ? B DC -8 B DG 8 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 19 N1 ? ? B DT -7 B DA 7 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 19 N6 ? ? B DT -7 B DA 7 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 18 N1 ? ? B DC -6 B DG 6 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 18 O6 ? ? B DC -6 B DG 6 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 18 N2 ? ? B DC -6 B DG 6 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 A DG 17 N1 ? ? B DC -5 B DG 5 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 A DG 17 O6 ? ? B DC -5 B DG 5 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 A DG 17 N2 ? ? B DC -5 B DG 5 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N3 ? ? ? 1_555 A DG 16 N1 ? ? B DC -4 B DG 4 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N4 ? ? ? 1_555 A DG 16 O6 ? ? B DC -4 B DG 4 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 O2 ? ? ? 1_555 A DG 16 N2 ? ? B DC -4 B DG 4 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N3 ? ? ? 1_555 A DG 15 N1 ? ? B DC -3 B DG 3 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N4 ? ? ? 1_555 A DG 15 O6 ? ? B DC -3 B DG 3 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 O2 ? ? ? 1_555 A DG 15 N2 ? ? B DC -3 B DG 3 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 12 N3 ? ? ? 1_555 A DA 14 N1 ? ? B DT -2 B DA 2 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 12 O4 ? ? ? 1_555 A DA 14 N6 ? ? B DT -2 B DA 2 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DA 14 N1 ? ? ? 1_555 A DT 12 N3 ? ? B DA 2 B DT -2 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 14 N6 ? ? ? 1_555 A DT 12 O4 ? ? B DA 2 B DT -2 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DC 11 N3 ? ? B DG 3 B DC -3 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DC 11 O2 ? ? B DG 3 B DC -3 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DC 11 N4 ? ? B DG 3 B DC -3 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DC 10 N3 ? ? B DG 4 B DC -4 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DC 10 O2 ? ? B DG 4 B DC -4 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 16 O6 ? ? ? 1_555 A DC 10 N4 ? ? B DG 4 B DC -4 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 17 N1 ? ? ? 1_555 A DC 9 N3 ? ? B DG 5 B DC -5 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 17 N2 ? ? ? 1_555 A DC 9 O2 ? ? B DG 5 B DC -5 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 17 O6 ? ? ? 1_555 A DC 9 N4 ? ? B DG 5 B DC -5 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 18 N1 ? ? ? 1_555 A DC 8 N3 ? ? B DG 6 B DC -6 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 18 N2 ? ? ? 1_555 A DC 8 O2 ? ? B DG 6 B DC -6 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DG 18 O6 ? ? ? 1_555 A DC 8 N4 ? ? B DG 6 B DC -6 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DA 19 N1 ? ? ? 1_555 A DT 7 N3 ? ? B DA 7 B DT -7 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DA 19 N6 ? ? ? 1_555 A DT 7 O4 ? ? B DA 7 B DT -7 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DG 20 N1 ? ? ? 1_555 A DC 6 N3 ? ? B DG 8 B DC -8 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 20 N2 ? ? ? 1_555 A DC 6 O2 ? ? B DG 8 B DC -8 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DG 20 O6 ? ? ? 1_555 A DC 6 N4 ? ? B DG 8 B DC -8 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DG 21 N1 ? ? ? 1_555 A DC 5 N3 ? ? B DG 9 B DC -9 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DG 21 N2 ? ? ? 1_555 A DC 5 O2 ? ? B DG 9 B DC -9 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DG 21 O6 ? ? ? 1_555 A DC 5 N4 ? ? B DG 9 B DC -9 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A DG 22 N1 ? ? ? 1_555 A DC 4 N3 ? ? B DG 10 B DC -10 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A DG 22 N2 ? ? ? 1_555 A DC 4 O2 ? ? B DG 10 B DC -10 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A DG 22 O6 ? ? ? 1_555 A DC 4 N4 ? ? B DG 10 B DC -10 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A DT 23 N3 ? ? ? 1_555 A DG 2 O6 ? ? B DT 11 B DG -12 6_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog57 hydrog ? ? A DT 23 N3 ? ? ? 1_555 A DA 3 N1 ? ? B DT 11 B DA -11 6_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog58 hydrog ? ? A DC 24 N3 ? ? ? 1_555 A DG 2 N1 ? ? B DC 12 B DG -12 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A DC 24 N4 ? ? ? 1_555 A DG 2 O6 ? ? B DC 12 B DG -12 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A DC 24 O2 ? ? ? 1_555 A DG 2 N2 ? ? B DC 12 B DG -12 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR B 6 ? SER B 7 ? TYR A 6 SER A 7 A 2 ARG B 43 ? TYR B 45 ? ARG A 43 TYR A 45 A 3 TYR B 35 ? VAL B 36 ? TYR A 35 VAL A 36 B 1 PHE B 125 ? GLU B 129 ? PHE A 125 GLU A 129 B 2 GLY B 215 ? ASN B 223 ? GLY A 215 ASN A 223 B 3 TYR B 268 ? ILE B 276 ? TYR A 268 ILE A 276 B 4 VAL B 251 ? PRO B 257 ? VAL A 251 PRO A 257 B 5 TYR B 170 ? PHE B 174 ? TYR A 170 PHE A 174 B 6 HIS B 189 ? PRO B 193 ? HIS A 189 PRO A 193 B 7 ILE B 132 ? GLU B 138 ? ILE A 132 GLU A 138 B 8 GLU B 208 ? ILE B 212 ? GLU A 208 ILE A 212 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR B 6 ? N TYR A 6 O TYR B 45 ? O TYR A 45 A 2 3 O TYR B 44 ? O TYR A 44 N TYR B 35 ? N TYR A 35 B 1 2 N PHE B 125 ? N PHE A 125 O CYS B 219 ? O CYS A 219 B 2 3 N TYR B 222 ? N TYR A 222 O VAL B 270 ? O VAL A 270 B 3 4 O LYS B 273 ? O LYS A 273 N TYR B 252 ? N TYR A 252 B 4 5 O GLU B 253 ? O GLU A 253 N ALA B 172 ? N ALA A 172 B 5 6 N GLY B 171 ? N GLY A 171 O PHE B 191 ? O PHE A 191 B 6 7 O THR B 192 ? O THR A 192 N ILE B 135 ? N ILE A 135 B 7 8 N ILE B 132 ? N ILE A 132 O ILE B 212 ? O ILE A 212 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BER 964 ? 9 'BINDING SITE FOR RESIDUE BER A 964' AC2 Software A GOL 966 ? 8 'BINDING SITE FOR RESIDUE GOL A 966' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ILE B 51 ? ILE A 51 . ? 6_555 ? 2 AC1 9 PRO B 144 ? PRO A 144 . ? 1_555 ? 3 AC1 9 ASN B 149 ? ASN A 149 . ? 1_555 ? 4 AC1 9 TYR B 170 ? TYR A 170 . ? 1_555 ? 5 AC1 9 TYR B 187 ? TYR A 187 . ? 1_555 ? 6 AC1 9 PHE B 224 ? PHE A 224 . ? 1_555 ? 7 AC1 9 PRO B 226 ? PRO A 226 . ? 1_555 ? 8 AC1 9 TYR B 229 ? TYR A 229 . ? 1_555 ? 9 AC1 9 TYR B 268 ? TYR A 268 . ? 1_555 ? 10 AC2 8 LEU B 55 ? LEU A 55 . ? 6_555 ? 11 AC2 8 SER B 58 ? SER A 58 . ? 6_555 ? 12 AC2 8 LEU B 80 ? LEU A 80 . ? 6_555 ? 13 AC2 8 TYR B 84 ? TYR A 84 . ? 6_555 ? 14 AC2 8 MET B 112 ? MET A 112 . ? 1_555 ? 15 AC2 8 THR B 166 ? THR A 166 . ? 1_555 ? 16 AC2 8 ASN B 167 ? ASN A 167 . ? 1_555 ? 17 AC2 8 ASN B 168 ? ASN A 168 . ? 1_555 ? # _database_PDB_matrix.entry_id 3D6Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3D6Y _atom_sites.fract_transf_matrix[1][1] 0.009405 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009405 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006814 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 -13 -13 DT T B . n A 1 2 DG 2 -12 -12 DG G B . n A 1 3 DA 3 -11 -11 DA A B . n A 1 4 DC 4 -10 -10 DC C B . n A 1 5 DC 5 -9 -9 DC C B . n A 1 6 DC 6 -8 -8 DC C B . n A 1 7 DT 7 -7 -7 DT T B . n A 1 8 DC 8 -6 -6 DC C B . n A 1 9 DC 9 -5 -5 DC C B . n A 1 10 DC 10 -4 -4 DC C B . n A 1 11 DC 11 -3 -3 DC C B . n A 1 12 DT 12 -2 -2 DT T B . n A 1 13 DT 13 1 1 DT T B . n A 1 14 DA 14 2 2 DA A B . n A 1 15 DG 15 3 3 DG G B . n A 1 16 DG 16 4 4 DG G B . n A 1 17 DG 17 5 5 DG G B . n A 1 18 DG 18 6 6 DG G B . n A 1 19 DA 19 7 7 DA A B . n A 1 20 DG 20 8 8 DG G B . n A 1 21 DG 21 9 9 DG G B . n A 1 22 DG 22 10 10 DG G B . n A 1 23 DT 23 11 11 DT T B . n A 1 24 DC 24 12 12 DC C B . n B 2 1 MET 1 1 ? ? ? A . n B 2 2 LYS 2 2 2 LYS LYS A . n B 2 3 GLU 3 3 3 GLU GLU A . n B 2 4 SER 4 4 4 SER SER A . n B 2 5 TYR 5 5 5 TYR TYR A . n B 2 6 TYR 6 6 6 TYR TYR A . n B 2 7 SER 7 7 7 SER SER A . n B 2 8 ILE 8 8 8 ILE ILE A . n B 2 9 GLY 9 9 9 GLY GLY A . n B 2 10 GLU 10 10 10 GLU GLU A . n B 2 11 VAL 11 11 11 VAL VAL A . n B 2 12 SER 12 12 12 SER SER A . n B 2 13 LYS 13 13 13 LYS LYS A . n B 2 14 LEU 14 14 14 LEU LEU A . n B 2 15 ALA 15 15 15 ALA ALA A . n B 2 16 ASN 16 16 16 ASN ASN A . n B 2 17 VAL 17 17 17 VAL VAL A . n B 2 18 SER 18 18 18 SER SER A . n B 2 19 ILE 19 19 19 ILE ILE A . n B 2 20 LYS 20 20 20 LYS LYS A . n B 2 21 ALA 21 21 21 ALA ALA A . n B 2 22 LEU 22 22 22 LEU LEU A . n B 2 23 ARG 23 23 23 ARG ARG A . n B 2 24 TYR 24 24 24 TYR TYR A . n B 2 25 TYR 25 25 25 TYR TYR A . n B 2 26 ASP 26 26 26 ASP ASP A . n B 2 27 LYS 27 27 27 LYS LYS A . n B 2 28 ILE 28 28 28 ILE ILE A . n B 2 29 ASP 29 29 29 ASP ASP A . n B 2 30 LEU 30 30 30 LEU LEU A . n B 2 31 PHE 31 31 31 PHE PHE A . n B 2 32 LYS 32 32 32 LYS LYS A . n B 2 33 PRO 33 33 33 PRO PRO A . n B 2 34 ALA 34 34 34 ALA ALA A . n B 2 35 TYR 35 35 35 TYR TYR A . n B 2 36 VAL 36 36 36 VAL VAL A . n B 2 37 ASP 37 37 37 ASP ASP A . n B 2 38 PRO 38 38 38 PRO PRO A . n B 2 39 ASP 39 39 39 ASP ASP A . n B 2 40 THR 40 40 40 THR THR A . n B 2 41 SER 41 41 41 SER SER A . n B 2 42 TYR 42 42 42 TYR TYR A . n B 2 43 ARG 43 43 43 ARG ARG A . n B 2 44 TYR 44 44 44 TYR TYR A . n B 2 45 TYR 45 45 45 TYR TYR A . n B 2 46 THR 46 46 46 THR THR A . n B 2 47 ASP 47 47 47 ASP ASP A . n B 2 48 SER 48 48 48 SER SER A . n B 2 49 GLN 49 49 49 GLN GLN A . n B 2 50 LEU 50 50 50 LEU LEU A . n B 2 51 ILE 51 51 51 ILE ILE A . n B 2 52 HIS 52 52 52 HIS HIS A . n B 2 53 LEU 53 53 53 LEU LEU A . n B 2 54 ASP 54 54 54 ASP ASP A . n B 2 55 LEU 55 55 55 LEU LEU A . n B 2 56 ILE 56 56 56 ILE ILE A . n B 2 57 LYS 57 57 57 LYS LYS A . n B 2 58 SER 58 58 58 SER SER A . n B 2 59 LEU 59 59 59 LEU LEU A . n B 2 60 LYS 60 60 60 LYS LYS A . n B 2 61 TYR 61 61 61 TYR TYR A . n B 2 62 ILE 62 62 62 ILE ILE A . n B 2 63 GLY 63 63 63 GLY GLY A . n B 2 64 THR 64 64 64 THR THR A . n B 2 65 PRO 65 65 65 PRO PRO A . n B 2 66 LEU 66 66 66 LEU LEU A . n B 2 67 GLU 67 67 67 GLU GLU A . n B 2 68 GLU 68 68 68 GLU GLU A . n B 2 69 MET 69 69 69 MET MET A . n B 2 70 LYS 70 70 70 LYS LYS A . n B 2 71 LYS 71 71 71 LYS LYS A . n B 2 72 ALA 72 72 72 ALA ALA A . n B 2 73 GLN 73 73 73 GLN GLN A . n B 2 74 ASP 74 74 74 ASP ASP A . n B 2 75 LEU 75 75 75 LEU LEU A . n B 2 76 GLU 76 76 76 GLU GLU A . n B 2 77 MET 77 77 77 MET MET A . n B 2 78 GLU 78 78 78 GLU GLU A . n B 2 79 GLU 79 79 79 GLU GLU A . n B 2 80 LEU 80 80 80 LEU LEU A . n B 2 81 PHE 81 81 81 PHE PHE A . n B 2 82 ALA 82 82 82 ALA ALA A . n B 2 83 PHE 83 83 83 PHE PHE A . n B 2 84 TYR 84 84 84 TYR TYR A . n B 2 85 THR 85 85 85 THR THR A . n B 2 86 GLU 86 86 86 GLU GLU A . n B 2 87 GLN 87 87 87 GLN GLN A . n B 2 88 GLU 88 88 88 GLU GLU A . n B 2 89 ARG 89 89 89 ARG ARG A . n B 2 90 GLN 90 90 90 GLN GLN A . n B 2 91 ILE 91 91 91 ILE ILE A . n B 2 92 ARG 92 92 92 ARG ARG A . n B 2 93 GLU 93 93 93 GLU GLU A . n B 2 94 LYS 94 94 94 LYS LYS A . n B 2 95 LEU 95 95 95 LEU LEU A . n B 2 96 ASP 96 96 96 ASP ASP A . n B 2 97 PHE 97 97 97 PHE PHE A . n B 2 98 LEU 98 98 98 LEU LEU A . n B 2 99 SER 99 99 99 SER SER A . n B 2 100 ALA 100 100 100 ALA ALA A . n B 2 101 LEU 101 101 101 LEU LEU A . n B 2 102 GLU 102 102 102 GLU GLU A . n B 2 103 GLN 103 103 103 GLN GLN A . n B 2 104 THR 104 104 104 THR THR A . n B 2 105 ILE 105 105 105 ILE ILE A . n B 2 106 SER 106 106 106 SER SER A . n B 2 107 LEU 107 107 107 LEU LEU A . n B 2 108 VAL 108 108 108 VAL VAL A . n B 2 109 LYS 109 109 109 LYS LYS A . n B 2 110 LYS 110 110 110 LYS LYS A . n B 2 111 ARG 111 111 111 ARG ARG A . n B 2 112 MET 112 112 112 MET MET A . n B 2 113 LYS 113 113 113 LYS LYS A . n B 2 114 ARG 114 114 114 ARG ARG A . n B 2 115 GLN 115 115 115 GLN GLN A . n B 2 116 MET 116 116 116 MET MET A . n B 2 117 GLU 117 117 117 GLU GLU A . n B 2 118 TYR 118 118 118 TYR TYR A . n B 2 119 PRO 119 119 119 PRO PRO A . n B 2 120 ALA 120 120 120 ALA ALA A . n B 2 121 LEU 121 121 121 LEU LEU A . n B 2 122 GLY 122 122 122 GLY GLY A . n B 2 123 GLU 123 123 123 GLU GLU A . n B 2 124 VAL 124 124 124 VAL VAL A . n B 2 125 PHE 125 125 125 PHE PHE A . n B 2 126 VAL 126 126 126 VAL VAL A . n B 2 127 LEU 127 127 127 LEU LEU A . n B 2 128 ASP 128 128 128 ASP ASP A . n B 2 129 GLU 129 129 129 GLU GLU A . n B 2 130 GLU 130 130 130 GLU GLU A . n B 2 131 GLU 131 131 131 GLU GLU A . n B 2 132 ILE 132 132 132 ILE ILE A . n B 2 133 ARG 133 133 133 ARG ARG A . n B 2 134 ILE 134 134 134 ILE ILE A . n B 2 135 ILE 135 135 135 ILE ILE A . n B 2 136 GLN 136 136 136 GLN GLN A . n B 2 137 THR 137 137 137 THR THR A . n B 2 138 GLU 138 138 138 GLU GLU A . n B 2 139 ALA 139 139 139 ALA ALA A . n B 2 140 GLU 140 140 140 GLU GLU A . n B 2 141 GLY 141 141 141 GLY GLY A . n B 2 142 ILE 142 142 142 ILE ILE A . n B 2 143 GLY 143 143 143 GLY GLY A . n B 2 144 PRO 144 144 144 PRO PRO A . n B 2 145 GLU 145 145 145 GLU GLU A . n B 2 146 ASN 146 146 146 ASN ASN A . n B 2 147 VAL 147 147 147 VAL VAL A . n B 2 148 LEU 148 148 148 LEU LEU A . n B 2 149 ASN 149 149 149 ASN ASN A . n B 2 150 ALA 150 150 150 ALA ALA A . n B 2 151 SER 151 151 151 SER SER A . n B 2 152 TYR 152 152 152 TYR TYR A . n B 2 153 SER 153 153 153 SER SER A . n B 2 154 LYS 154 154 154 LYS LYS A . n B 2 155 LEU 155 155 155 LEU LEU A . n B 2 156 LYS 156 156 156 LYS LYS A . n B 2 157 LYS 157 157 157 LYS LYS A . n B 2 158 PHE 158 158 158 PHE PHE A . n B 2 159 ILE 159 159 159 ILE ILE A . n B 2 160 GLU 160 160 160 GLU GLU A . n B 2 161 SER 161 161 161 SER SER A . n B 2 162 ALA 162 162 162 ALA ALA A . n B 2 163 ASP 163 163 163 ASP ASP A . n B 2 164 GLY 164 164 164 GLY GLY A . n B 2 165 PHE 165 165 165 PHE PHE A . n B 2 166 THR 166 166 166 THR THR A . n B 2 167 ASN 167 167 167 ASN ASN A . n B 2 168 ASN 168 168 168 ASN ASN A . n B 2 169 SER 169 169 169 SER SER A . n B 2 170 TYR 170 170 170 TYR TYR A . n B 2 171 GLY 171 171 171 GLY GLY A . n B 2 172 ALA 172 172 172 ALA ALA A . n B 2 173 THR 173 173 173 THR THR A . n B 2 174 PHE 174 174 174 PHE PHE A . n B 2 175 SER 175 175 175 SER SER A . n B 2 176 PHE 176 176 176 PHE PHE A . n B 2 177 GLN 177 177 177 GLN GLN A . n B 2 178 PRO 178 178 178 PRO PRO A . n B 2 179 TYR 179 179 179 TYR TYR A . n B 2 180 THR 180 180 180 THR THR A . n B 2 181 SER 181 181 181 SER SER A . n B 2 182 ILE 182 182 182 ILE ILE A . n B 2 183 ASP 183 183 183 ASP ASP A . n B 2 184 GLU 184 184 184 GLU GLU A . n B 2 185 MET 185 185 185 MET MET A . n B 2 186 THR 186 186 186 THR THR A . n B 2 187 TYR 187 187 187 TYR TYR A . n B 2 188 ARG 188 188 188 ARG ARG A . n B 2 189 HIS 189 189 189 HIS HIS A . n B 2 190 ILE 190 190 190 ILE ILE A . n B 2 191 PHE 191 191 191 PHE PHE A . n B 2 192 THR 192 192 192 THR THR A . n B 2 193 PRO 193 193 193 PRO PRO A . n B 2 194 VAL 194 194 194 VAL VAL A . n B 2 195 LEU 195 195 195 LEU LEU A . n B 2 196 THR 196 196 196 THR THR A . n B 2 197 ASN 197 197 197 ASN ASN A . n B 2 198 LYS 198 198 198 LYS LYS A . n B 2 199 GLN 199 199 199 GLN GLN A . n B 2 200 ILE 200 200 200 ILE ILE A . n B 2 201 SER 201 201 201 SER SER A . n B 2 202 SER 202 202 202 SER SER A . n B 2 203 ILE 203 203 203 ILE ILE A . n B 2 204 THR 204 204 204 THR THR A . n B 2 205 PRO 205 205 205 PRO PRO A . n B 2 206 ASP 206 206 206 ASP ASP A . n B 2 207 MET 207 207 207 MET MET A . n B 2 208 GLU 208 208 208 GLU GLU A . n B 2 209 ILE 209 209 209 ILE ILE A . n B 2 210 THR 210 210 210 THR THR A . n B 2 211 THR 211 211 211 THR THR A . n B 2 212 ILE 212 212 212 ILE ILE A . n B 2 213 PRO 213 213 213 PRO PRO A . n B 2 214 LYS 214 214 214 LYS LYS A . n B 2 215 GLY 215 215 215 GLY GLY A . n B 2 216 ARG 216 216 216 ARG ARG A . n B 2 217 TYR 217 217 217 TYR TYR A . n B 2 218 ALA 218 218 218 ALA ALA A . n B 2 219 CYS 219 219 219 CYS CYS A . n B 2 220 ILE 220 220 220 ILE ILE A . n B 2 221 ALA 221 221 221 ALA ALA A . n B 2 222 TYR 222 222 222 TYR TYR A . n B 2 223 ASN 223 223 223 ASN ASN A . n B 2 224 PHE 224 224 224 PHE PHE A . n B 2 225 SER 225 225 225 SER SER A . n B 2 226 PRO 226 226 226 PRO PRO A . n B 2 227 GLU 227 227 227 GLU GLU A . n B 2 228 HIS 228 228 228 HIS HIS A . n B 2 229 TYR 229 229 229 TYR TYR A . n B 2 230 PHE 230 230 230 PHE PHE A . n B 2 231 LEU 231 231 231 LEU LEU A . n B 2 232 ASN 232 232 232 ASN ASN A . n B 2 233 LEU 233 233 233 LEU LEU A . n B 2 234 GLN 234 234 234 GLN GLN A . n B 2 235 LYS 235 235 235 LYS LYS A . n B 2 236 LEU 236 236 236 LEU LEU A . n B 2 237 ILE 237 237 237 ILE ILE A . n B 2 238 LYS 238 238 238 LYS LYS A . n B 2 239 TYR 239 239 239 TYR TYR A . n B 2 240 ILE 240 240 240 ILE ILE A . n B 2 241 ALA 241 241 241 ALA ALA A . n B 2 242 ASP 242 242 242 ASP ASP A . n B 2 243 ARG 243 243 243 ARG ARG A . n B 2 244 GLN 244 244 244 GLN GLN A . n B 2 245 LEU 245 245 245 LEU LEU A . n B 2 246 THR 246 246 246 THR THR A . n B 2 247 VAL 247 247 247 VAL VAL A . n B 2 248 VAL 248 248 248 VAL VAL A . n B 2 249 SER 249 249 249 SER SER A . n B 2 250 ASP 250 250 250 ASP ASP A . n B 2 251 VAL 251 251 251 VAL VAL A . n B 2 252 TYR 252 252 252 TYR TYR A . n B 2 253 GLU 253 253 253 GLU GLU A . n B 2 254 LEU 254 254 254 LEU LEU A . n B 2 255 ILE 255 255 255 ILE ILE A . n B 2 256 ILE 256 256 256 ILE ILE A . n B 2 257 PRO 257 257 257 PRO PRO A . n B 2 258 ILE 258 258 258 ILE ILE A . n B 2 259 HIS 259 259 259 HIS HIS A . n B 2 260 TYR 260 260 260 TYR TYR A . n B 2 261 SER 261 261 261 SER SER A . n B 2 262 PRO 262 262 262 PRO PRO A . n B 2 263 LYS 263 263 263 LYS LYS A . n B 2 264 LYS 264 264 264 LYS LYS A . n B 2 265 GLN 265 265 265 GLN GLN A . n B 2 266 GLU 266 266 266 GLU GLU A . n B 2 267 GLU 267 267 267 GLU GLU A . n B 2 268 TYR 268 268 268 TYR TYR A . n B 2 269 ARG 269 269 269 ARG ARG A . n B 2 270 VAL 270 270 270 VAL VAL A . n B 2 271 GLU 271 271 271 GLU GLU A . n B 2 272 MET 272 272 272 MET MET A . n B 2 273 LYS 273 273 273 LYS LYS A . n B 2 274 ILE 274 274 274 ILE ILE A . n B 2 275 GLU 275 275 275 GLU GLU A . n B 2 276 ILE 276 276 276 ILE ILE A . n B 2 277 LEU 277 277 277 LEU LEU A . n B 2 278 ASP 278 278 278 ASP ASP A . n B 2 279 HIS 279 279 ? ? ? A . n B 2 280 HIS 280 280 ? ? ? A . n B 2 281 HIS 281 281 ? ? ? A . n B 2 282 HIS 282 282 ? ? ? A . n B 2 283 HIS 283 283 ? ? ? A . n B 2 284 HIS 284 284 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BER 1 964 964 BER BER A . D 4 GOL 1 965 200 GOL GOL A . E 4 GOL 1 966 202 GOL GOL A . F 5 HOH 1 967 1 HOH HOH A . F 5 HOH 2 968 2 HOH HOH A . F 5 HOH 3 969 3 HOH HOH A . F 5 HOH 4 970 4 HOH HOH A . F 5 HOH 5 971 5 HOH HOH A . F 5 HOH 6 972 6 HOH HOH A . F 5 HOH 7 973 7 HOH HOH A . F 5 HOH 8 974 8 HOH HOH A . F 5 HOH 9 975 9 HOH HOH A . F 5 HOH 10 976 10 HOH HOH A . F 5 HOH 11 977 11 HOH HOH A . F 5 HOH 12 978 12 HOH HOH A . F 5 HOH 13 979 13 HOH HOH A . F 5 HOH 14 980 14 HOH HOH A . F 5 HOH 15 981 15 HOH HOH A . F 5 HOH 16 982 16 HOH HOH A . F 5 HOH 17 983 17 HOH HOH A . F 5 HOH 18 984 18 HOH HOH A . F 5 HOH 19 985 19 HOH HOH A . F 5 HOH 20 986 20 HOH HOH A . F 5 HOH 21 987 21 HOH HOH A . F 5 HOH 22 988 22 HOH HOH A . F 5 HOH 23 989 23 HOH HOH A . F 5 HOH 24 990 24 HOH HOH A . F 5 HOH 25 991 25 HOH HOH A . F 5 HOH 26 992 26 HOH HOH A . F 5 HOH 27 993 27 HOH HOH A . F 5 HOH 28 994 28 HOH HOH A . F 5 HOH 29 995 29 HOH HOH A . F 5 HOH 30 996 30 HOH HOH A . F 5 HOH 31 997 31 HOH HOH A . F 5 HOH 32 998 32 HOH HOH A . F 5 HOH 33 999 33 HOH HOH A . F 5 HOH 34 1000 35 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 14530 ? 1 MORE -92.3 ? 1 'SSA (A^2)' 32540 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 x,-y,-z+1/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 73.3750000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Source and taxonomy' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' entity_src_gen 3 3 'Structure model' pdbx_entity_src_syn 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id' 4 3 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' 5 3 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 6 3 'Structure model' '_struct_ref_seq_dif.details' 7 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.2 ? 1 ADSC 'data collection' Quantum ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 EPMR phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 4 ? ? -110.00 -145.42 2 1 ASP A 39 ? ? -108.18 -62.34 3 1 MET A 77 ? ? 54.19 -31.58 4 1 GLU A 117 ? ? -106.07 50.99 5 1 ALA A 120 ? ? -173.32 140.99 6 1 ASN A 167 ? ? -41.22 150.31 7 1 LEU A 195 ? ? -106.53 -72.39 8 1 LYS A 198 ? ? -32.17 128.53 9 1 GLN A 199 ? ? -39.45 107.38 10 1 SER A 201 ? ? -43.94 102.84 11 1 SER A 202 ? ? 26.71 84.85 12 1 THR A 210 ? ? -142.67 -151.22 13 1 SER A 225 ? ? -164.01 119.72 14 1 LEU A 277 ? ? -105.32 -65.88 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? B MET 1 2 1 Y 1 A HIS 279 ? B HIS 279 3 1 Y 1 A HIS 280 ? B HIS 280 4 1 Y 1 A HIS 281 ? B HIS 281 5 1 Y 1 A HIS 282 ? B HIS 282 6 1 Y 1 A HIS 283 ? B HIS 283 7 1 Y 1 A HIS 284 ? B HIS 284 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BER C1 C Y N 74 BER C2 C Y N 75 BER N1 N Y N 76 BER C3 C Y N 77 BER C4 C Y N 78 BER C5 C Y N 79 BER C6 C Y N 80 BER C7 C N N 81 BER C8 C Y N 82 BER C9 C Y N 83 BER C10 C N N 84 BER C11 C Y N 85 BER C12 C Y N 86 BER C13 C Y N 87 BER C14 C Y N 88 BER O1 O N N 89 BER C15 C Y N 90 BER C16 C Y N 91 BER O2 O N N 92 BER C17 C N N 93 BER C18 C Y N 94 BER O3 O N N 95 BER O4 O N N 96 BER C19 C N N 97 BER C20 C N N 98 BER H31 H N N 99 BER H51 H N N 100 BER H61 H N N 101 BER H71 H N N 102 BER H72 H N N 103 BER H91 H N N 104 BER H101 H N N 105 BER H102 H N N 106 BER H131 H N N 107 BER H161 H N N 108 BER H171 H N N 109 BER H172 H N N 110 BER H191 H N N 111 BER H192 H N N 112 BER H193 H N N 113 BER H201 H N N 114 BER H202 H N N 115 BER H203 H N N 116 CYS N N N N 117 CYS CA C N R 118 CYS C C N N 119 CYS O O N N 120 CYS CB C N N 121 CYS SG S N N 122 CYS OXT O N N 123 CYS H H N N 124 CYS H2 H N N 125 CYS HA H N N 126 CYS HB2 H N N 127 CYS HB3 H N N 128 CYS HG H N N 129 CYS HXT H N N 130 DA OP3 O N N 131 DA P P N N 132 DA OP1 O N N 133 DA OP2 O N N 134 DA "O5'" O N N 135 DA "C5'" C N N 136 DA "C4'" C N R 137 DA "O4'" O N N 138 DA "C3'" C N S 139 DA "O3'" O N N 140 DA "C2'" C N N 141 DA "C1'" C N R 142 DA N9 N Y N 143 DA C8 C Y N 144 DA N7 N Y N 145 DA C5 C Y N 146 DA C6 C Y N 147 DA N6 N N N 148 DA N1 N Y N 149 DA C2 C Y N 150 DA N3 N Y N 151 DA C4 C Y N 152 DA HOP3 H N N 153 DA HOP2 H N N 154 DA "H5'" H N N 155 DA "H5''" H N N 156 DA "H4'" H N N 157 DA "H3'" H N N 158 DA "HO3'" H N N 159 DA "H2'" H N N 160 DA "H2''" H N N 161 DA "H1'" H N N 162 DA H8 H N N 163 DA H61 H N N 164 DA H62 H N N 165 DA H2 H N N 166 DC OP3 O N N 167 DC P P N N 168 DC OP1 O N N 169 DC OP2 O N N 170 DC "O5'" O N N 171 DC "C5'" C N N 172 DC "C4'" C N R 173 DC "O4'" O N N 174 DC "C3'" C N S 175 DC "O3'" O N N 176 DC "C2'" C N N 177 DC "C1'" C N R 178 DC N1 N N N 179 DC C2 C N N 180 DC O2 O N N 181 DC N3 N N N 182 DC C4 C N N 183 DC N4 N N N 184 DC C5 C N N 185 DC C6 C N N 186 DC HOP3 H N N 187 DC HOP2 H N N 188 DC "H5'" H N N 189 DC "H5''" H N N 190 DC "H4'" H N N 191 DC "H3'" H N N 192 DC "HO3'" H N N 193 DC "H2'" H N N 194 DC "H2''" H N N 195 DC "H1'" H N N 196 DC H41 H N N 197 DC H42 H N N 198 DC H5 H N N 199 DC H6 H N N 200 DG OP3 O N N 201 DG P P N N 202 DG OP1 O N N 203 DG OP2 O N N 204 DG "O5'" O N N 205 DG "C5'" C N N 206 DG "C4'" C N R 207 DG "O4'" O N N 208 DG "C3'" C N S 209 DG "O3'" O N N 210 DG "C2'" C N N 211 DG "C1'" C N R 212 DG N9 N Y N 213 DG C8 C Y N 214 DG N7 N Y N 215 DG C5 C Y N 216 DG C6 C N N 217 DG O6 O N N 218 DG N1 N N N 219 DG C2 C N N 220 DG N2 N N N 221 DG N3 N N N 222 DG C4 C Y N 223 DG HOP3 H N N 224 DG HOP2 H N N 225 DG "H5'" H N N 226 DG "H5''" H N N 227 DG "H4'" H N N 228 DG "H3'" H N N 229 DG "HO3'" H N N 230 DG "H2'" H N N 231 DG "H2''" H N N 232 DG "H1'" H N N 233 DG H8 H N N 234 DG H1 H N N 235 DG H21 H N N 236 DG H22 H N N 237 DT OP3 O N N 238 DT P P N N 239 DT OP1 O N N 240 DT OP2 O N N 241 DT "O5'" O N N 242 DT "C5'" C N N 243 DT "C4'" C N R 244 DT "O4'" O N N 245 DT "C3'" C N S 246 DT "O3'" O N N 247 DT "C2'" C N N 248 DT "C1'" C N R 249 DT N1 N N N 250 DT C2 C N N 251 DT O2 O N N 252 DT N3 N N N 253 DT C4 C N N 254 DT O4 O N N 255 DT C5 C N N 256 DT C7 C N N 257 DT C6 C N N 258 DT HOP3 H N N 259 DT HOP2 H N N 260 DT "H5'" H N N 261 DT "H5''" H N N 262 DT "H4'" H N N 263 DT "H3'" H N N 264 DT "HO3'" H N N 265 DT "H2'" H N N 266 DT "H2''" H N N 267 DT "H1'" H N N 268 DT H3 H N N 269 DT H71 H N N 270 DT H72 H N N 271 DT H73 H N N 272 DT H6 H N N 273 GLN N N N N 274 GLN CA C N S 275 GLN C C N N 276 GLN O O N N 277 GLN CB C N N 278 GLN CG C N N 279 GLN CD C N N 280 GLN OE1 O N N 281 GLN NE2 N N N 282 GLN OXT O N N 283 GLN H H N N 284 GLN H2 H N N 285 GLN HA H N N 286 GLN HB2 H N N 287 GLN HB3 H N N 288 GLN HG2 H N N 289 GLN HG3 H N N 290 GLN HE21 H N N 291 GLN HE22 H N N 292 GLN HXT H N N 293 GLU N N N N 294 GLU CA C N S 295 GLU C C N N 296 GLU O O N N 297 GLU CB C N N 298 GLU CG C N N 299 GLU CD C N N 300 GLU OE1 O N N 301 GLU OE2 O N N 302 GLU OXT O N N 303 GLU H H N N 304 GLU H2 H N N 305 GLU HA H N N 306 GLU HB2 H N N 307 GLU HB3 H N N 308 GLU HG2 H N N 309 GLU HG3 H N N 310 GLU HE2 H N N 311 GLU HXT H N N 312 GLY N N N N 313 GLY CA C N N 314 GLY C C N N 315 GLY O O N N 316 GLY OXT O N N 317 GLY H H N N 318 GLY H2 H N N 319 GLY HA2 H N N 320 GLY HA3 H N N 321 GLY HXT H N N 322 GOL C1 C N N 323 GOL O1 O N N 324 GOL C2 C N N 325 GOL O2 O N N 326 GOL C3 C N N 327 GOL O3 O N N 328 GOL H11 H N N 329 GOL H12 H N N 330 GOL HO1 H N N 331 GOL H2 H N N 332 GOL HO2 H N N 333 GOL H31 H N N 334 GOL H32 H N N 335 GOL HO3 H N N 336 HIS N N N N 337 HIS CA C N S 338 HIS C C N N 339 HIS O O N N 340 HIS CB C N N 341 HIS CG C Y N 342 HIS ND1 N Y N 343 HIS CD2 C Y N 344 HIS CE1 C Y N 345 HIS NE2 N Y N 346 HIS OXT O N N 347 HIS H H N N 348 HIS H2 H N N 349 HIS HA H N N 350 HIS HB2 H N N 351 HIS HB3 H N N 352 HIS HD1 H N N 353 HIS HD2 H N N 354 HIS HE1 H N N 355 HIS HE2 H N N 356 HIS HXT H N N 357 HOH O O N N 358 HOH H1 H N N 359 HOH H2 H N N 360 ILE N N N N 361 ILE CA C N S 362 ILE C C N N 363 ILE O O N N 364 ILE CB C N S 365 ILE CG1 C N N 366 ILE CG2 C N N 367 ILE CD1 C N N 368 ILE OXT O N N 369 ILE H H N N 370 ILE H2 H N N 371 ILE HA H N N 372 ILE HB H N N 373 ILE HG12 H N N 374 ILE HG13 H N N 375 ILE HG21 H N N 376 ILE HG22 H N N 377 ILE HG23 H N N 378 ILE HD11 H N N 379 ILE HD12 H N N 380 ILE HD13 H N N 381 ILE HXT H N N 382 LEU N N N N 383 LEU CA C N S 384 LEU C C N N 385 LEU O O N N 386 LEU CB C N N 387 LEU CG C N N 388 LEU CD1 C N N 389 LEU CD2 C N N 390 LEU OXT O N N 391 LEU H H N N 392 LEU H2 H N N 393 LEU HA H N N 394 LEU HB2 H N N 395 LEU HB3 H N N 396 LEU HG H N N 397 LEU HD11 H N N 398 LEU HD12 H N N 399 LEU HD13 H N N 400 LEU HD21 H N N 401 LEU HD22 H N N 402 LEU HD23 H N N 403 LEU HXT H N N 404 LYS N N N N 405 LYS CA C N S 406 LYS C C N N 407 LYS O O N N 408 LYS CB C N N 409 LYS CG C N N 410 LYS CD C N N 411 LYS CE C N N 412 LYS NZ N N N 413 LYS OXT O N N 414 LYS H H N N 415 LYS H2 H N N 416 LYS HA H N N 417 LYS HB2 H N N 418 LYS HB3 H N N 419 LYS HG2 H N N 420 LYS HG3 H N N 421 LYS HD2 H N N 422 LYS HD3 H N N 423 LYS HE2 H N N 424 LYS HE3 H N N 425 LYS HZ1 H N N 426 LYS HZ2 H N N 427 LYS HZ3 H N N 428 LYS HXT H N N 429 MET N N N N 430 MET CA C N S 431 MET C C N N 432 MET O O N N 433 MET CB C N N 434 MET CG C N N 435 MET SD S N N 436 MET CE C N N 437 MET OXT O N N 438 MET H H N N 439 MET H2 H N N 440 MET HA H N N 441 MET HB2 H N N 442 MET HB3 H N N 443 MET HG2 H N N 444 MET HG3 H N N 445 MET HE1 H N N 446 MET HE2 H N N 447 MET HE3 H N N 448 MET HXT H N N 449 PHE N N N N 450 PHE CA C N S 451 PHE C C N N 452 PHE O O N N 453 PHE CB C N N 454 PHE CG C Y N 455 PHE CD1 C Y N 456 PHE CD2 C Y N 457 PHE CE1 C Y N 458 PHE CE2 C Y N 459 PHE CZ C Y N 460 PHE OXT O N N 461 PHE H H N N 462 PHE H2 H N N 463 PHE HA H N N 464 PHE HB2 H N N 465 PHE HB3 H N N 466 PHE HD1 H N N 467 PHE HD2 H N N 468 PHE HE1 H N N 469 PHE HE2 H N N 470 PHE HZ H N N 471 PHE HXT H N N 472 PRO N N N N 473 PRO CA C N S 474 PRO C C N N 475 PRO O O N N 476 PRO CB C N N 477 PRO CG C N N 478 PRO CD C N N 479 PRO OXT O N N 480 PRO H H N N 481 PRO HA H N N 482 PRO HB2 H N N 483 PRO HB3 H N N 484 PRO HG2 H N N 485 PRO HG3 H N N 486 PRO HD2 H N N 487 PRO HD3 H N N 488 PRO HXT H N N 489 SER N N N N 490 SER CA C N S 491 SER C C N N 492 SER O O N N 493 SER CB C N N 494 SER OG O N N 495 SER OXT O N N 496 SER H H N N 497 SER H2 H N N 498 SER HA H N N 499 SER HB2 H N N 500 SER HB3 H N N 501 SER HG H N N 502 SER HXT H N N 503 THR N N N N 504 THR CA C N S 505 THR C C N N 506 THR O O N N 507 THR CB C N R 508 THR OG1 O N N 509 THR CG2 C N N 510 THR OXT O N N 511 THR H H N N 512 THR H2 H N N 513 THR HA H N N 514 THR HB H N N 515 THR HG1 H N N 516 THR HG21 H N N 517 THR HG22 H N N 518 THR HG23 H N N 519 THR HXT H N N 520 TYR N N N N 521 TYR CA C N S 522 TYR C C N N 523 TYR O O N N 524 TYR CB C N N 525 TYR CG C Y N 526 TYR CD1 C Y N 527 TYR CD2 C Y N 528 TYR CE1 C Y N 529 TYR CE2 C Y N 530 TYR CZ C Y N 531 TYR OH O N N 532 TYR OXT O N N 533 TYR H H N N 534 TYR H2 H N N 535 TYR HA H N N 536 TYR HB2 H N N 537 TYR HB3 H N N 538 TYR HD1 H N N 539 TYR HD2 H N N 540 TYR HE1 H N N 541 TYR HE2 H N N 542 TYR HH H N N 543 TYR HXT H N N 544 VAL N N N N 545 VAL CA C N S 546 VAL C C N N 547 VAL O O N N 548 VAL CB C N N 549 VAL CG1 C N N 550 VAL CG2 C N N 551 VAL OXT O N N 552 VAL H H N N 553 VAL H2 H N N 554 VAL HA H N N 555 VAL HB H N N 556 VAL HG11 H N N 557 VAL HG12 H N N 558 VAL HG13 H N N 559 VAL HG21 H N N 560 VAL HG22 H N N 561 VAL HG23 H N N 562 VAL HXT H N N 563 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BER C1 C2 sing Y N 70 BER C1 N1 doub Y N 71 BER C1 C3 sing Y N 72 BER C2 C4 doub Y N 73 BER C2 C5 sing Y N 74 BER N1 C6 sing Y N 75 BER N1 C7 sing N N 76 BER C3 C8 doub Y N 77 BER C3 H31 sing N N 78 BER C4 C9 sing Y N 79 BER C4 C10 sing N N 80 BER C5 C11 doub Y N 81 BER C5 H51 sing N N 82 BER C6 C12 doub Y N 83 BER C6 H61 sing N N 84 BER C7 C10 sing N N 85 BER C7 H71 sing N N 86 BER C7 H72 sing N N 87 BER C8 C12 sing Y N 88 BER C8 C13 sing Y N 89 BER C9 C14 doub Y N 90 BER C9 H91 sing N N 91 BER C10 H101 sing N N 92 BER C10 H102 sing N N 93 BER C11 C14 sing Y N 94 BER C11 O1 sing N N 95 BER C12 C15 sing Y N 96 BER C13 C16 doub Y N 97 BER C13 H131 sing N N 98 BER C14 O2 sing N N 99 BER O1 C17 sing N N 100 BER C15 C18 doub Y N 101 BER C15 O3 sing N N 102 BER C16 C18 sing Y N 103 BER C16 H161 sing N N 104 BER O2 C17 sing N N 105 BER C17 H171 sing N N 106 BER C17 H172 sing N N 107 BER C18 O4 sing N N 108 BER O3 C19 sing N N 109 BER O4 C20 sing N N 110 BER C19 H191 sing N N 111 BER C19 H192 sing N N 112 BER C19 H193 sing N N 113 BER C20 H201 sing N N 114 BER C20 H202 sing N N 115 BER C20 H203 sing N N 116 CYS N CA sing N N 117 CYS N H sing N N 118 CYS N H2 sing N N 119 CYS CA C sing N N 120 CYS CA CB sing N N 121 CYS CA HA sing N N 122 CYS C O doub N N 123 CYS C OXT sing N N 124 CYS CB SG sing N N 125 CYS CB HB2 sing N N 126 CYS CB HB3 sing N N 127 CYS SG HG sing N N 128 CYS OXT HXT sing N N 129 DA OP3 P sing N N 130 DA OP3 HOP3 sing N N 131 DA P OP1 doub N N 132 DA P OP2 sing N N 133 DA P "O5'" sing N N 134 DA OP2 HOP2 sing N N 135 DA "O5'" "C5'" sing N N 136 DA "C5'" "C4'" sing N N 137 DA "C5'" "H5'" sing N N 138 DA "C5'" "H5''" sing N N 139 DA "C4'" "O4'" sing N N 140 DA "C4'" "C3'" sing N N 141 DA "C4'" "H4'" sing N N 142 DA "O4'" "C1'" sing N N 143 DA "C3'" "O3'" sing N N 144 DA "C3'" "C2'" sing N N 145 DA "C3'" "H3'" sing N N 146 DA "O3'" "HO3'" sing N N 147 DA "C2'" "C1'" sing N N 148 DA "C2'" "H2'" sing N N 149 DA "C2'" "H2''" sing N N 150 DA "C1'" N9 sing N N 151 DA "C1'" "H1'" sing N N 152 DA N9 C8 sing Y N 153 DA N9 C4 sing Y N 154 DA C8 N7 doub Y N 155 DA C8 H8 sing N N 156 DA N7 C5 sing Y N 157 DA C5 C6 sing Y N 158 DA C5 C4 doub Y N 159 DA C6 N6 sing N N 160 DA C6 N1 doub Y N 161 DA N6 H61 sing N N 162 DA N6 H62 sing N N 163 DA N1 C2 sing Y N 164 DA C2 N3 doub Y N 165 DA C2 H2 sing N N 166 DA N3 C4 sing Y N 167 DC OP3 P sing N N 168 DC OP3 HOP3 sing N N 169 DC P OP1 doub N N 170 DC P OP2 sing N N 171 DC P "O5'" sing N N 172 DC OP2 HOP2 sing N N 173 DC "O5'" "C5'" sing N N 174 DC "C5'" "C4'" sing N N 175 DC "C5'" "H5'" sing N N 176 DC "C5'" "H5''" sing N N 177 DC "C4'" "O4'" sing N N 178 DC "C4'" "C3'" sing N N 179 DC "C4'" "H4'" sing N N 180 DC "O4'" "C1'" sing N N 181 DC "C3'" "O3'" sing N N 182 DC "C3'" "C2'" sing N N 183 DC "C3'" "H3'" sing N N 184 DC "O3'" "HO3'" sing N N 185 DC "C2'" "C1'" sing N N 186 DC "C2'" "H2'" sing N N 187 DC "C2'" "H2''" sing N N 188 DC "C1'" N1 sing N N 189 DC "C1'" "H1'" sing N N 190 DC N1 C2 sing N N 191 DC N1 C6 sing N N 192 DC C2 O2 doub N N 193 DC C2 N3 sing N N 194 DC N3 C4 doub N N 195 DC C4 N4 sing N N 196 DC C4 C5 sing N N 197 DC N4 H41 sing N N 198 DC N4 H42 sing N N 199 DC C5 C6 doub N N 200 DC C5 H5 sing N N 201 DC C6 H6 sing N N 202 DG OP3 P sing N N 203 DG OP3 HOP3 sing N N 204 DG P OP1 doub N N 205 DG P OP2 sing N N 206 DG P "O5'" sing N N 207 DG OP2 HOP2 sing N N 208 DG "O5'" "C5'" sing N N 209 DG "C5'" "C4'" sing N N 210 DG "C5'" "H5'" sing N N 211 DG "C5'" "H5''" sing N N 212 DG "C4'" "O4'" sing N N 213 DG "C4'" "C3'" sing N N 214 DG "C4'" "H4'" sing N N 215 DG "O4'" "C1'" sing N N 216 DG "C3'" "O3'" sing N N 217 DG "C3'" "C2'" sing N N 218 DG "C3'" "H3'" sing N N 219 DG "O3'" "HO3'" sing N N 220 DG "C2'" "C1'" sing N N 221 DG "C2'" "H2'" sing N N 222 DG "C2'" "H2''" sing N N 223 DG "C1'" N9 sing N N 224 DG "C1'" "H1'" sing N N 225 DG N9 C8 sing Y N 226 DG N9 C4 sing Y N 227 DG C8 N7 doub Y N 228 DG C8 H8 sing N N 229 DG N7 C5 sing Y N 230 DG C5 C6 sing N N 231 DG C5 C4 doub Y N 232 DG C6 O6 doub N N 233 DG C6 N1 sing N N 234 DG N1 C2 sing N N 235 DG N1 H1 sing N N 236 DG C2 N2 sing N N 237 DG C2 N3 doub N N 238 DG N2 H21 sing N N 239 DG N2 H22 sing N N 240 DG N3 C4 sing N N 241 DT OP3 P sing N N 242 DT OP3 HOP3 sing N N 243 DT P OP1 doub N N 244 DT P OP2 sing N N 245 DT P "O5'" sing N N 246 DT OP2 HOP2 sing N N 247 DT "O5'" "C5'" sing N N 248 DT "C5'" "C4'" sing N N 249 DT "C5'" "H5'" sing N N 250 DT "C5'" "H5''" sing N N 251 DT "C4'" "O4'" sing N N 252 DT "C4'" "C3'" sing N N 253 DT "C4'" "H4'" sing N N 254 DT "O4'" "C1'" sing N N 255 DT "C3'" "O3'" sing N N 256 DT "C3'" "C2'" sing N N 257 DT "C3'" "H3'" sing N N 258 DT "O3'" "HO3'" sing N N 259 DT "C2'" "C1'" sing N N 260 DT "C2'" "H2'" sing N N 261 DT "C2'" "H2''" sing N N 262 DT "C1'" N1 sing N N 263 DT "C1'" "H1'" sing N N 264 DT N1 C2 sing N N 265 DT N1 C6 sing N N 266 DT C2 O2 doub N N 267 DT C2 N3 sing N N 268 DT N3 C4 sing N N 269 DT N3 H3 sing N N 270 DT C4 O4 doub N N 271 DT C4 C5 sing N N 272 DT C5 C7 sing N N 273 DT C5 C6 doub N N 274 DT C7 H71 sing N N 275 DT C7 H72 sing N N 276 DT C7 H73 sing N N 277 DT C6 H6 sing N N 278 GLN N CA sing N N 279 GLN N H sing N N 280 GLN N H2 sing N N 281 GLN CA C sing N N 282 GLN CA CB sing N N 283 GLN CA HA sing N N 284 GLN C O doub N N 285 GLN C OXT sing N N 286 GLN CB CG sing N N 287 GLN CB HB2 sing N N 288 GLN CB HB3 sing N N 289 GLN CG CD sing N N 290 GLN CG HG2 sing N N 291 GLN CG HG3 sing N N 292 GLN CD OE1 doub N N 293 GLN CD NE2 sing N N 294 GLN NE2 HE21 sing N N 295 GLN NE2 HE22 sing N N 296 GLN OXT HXT sing N N 297 GLU N CA sing N N 298 GLU N H sing N N 299 GLU N H2 sing N N 300 GLU CA C sing N N 301 GLU CA CB sing N N 302 GLU CA HA sing N N 303 GLU C O doub N N 304 GLU C OXT sing N N 305 GLU CB CG sing N N 306 GLU CB HB2 sing N N 307 GLU CB HB3 sing N N 308 GLU CG CD sing N N 309 GLU CG HG2 sing N N 310 GLU CG HG3 sing N N 311 GLU CD OE1 doub N N 312 GLU CD OE2 sing N N 313 GLU OE2 HE2 sing N N 314 GLU OXT HXT sing N N 315 GLY N CA sing N N 316 GLY N H sing N N 317 GLY N H2 sing N N 318 GLY CA C sing N N 319 GLY CA HA2 sing N N 320 GLY CA HA3 sing N N 321 GLY C O doub N N 322 GLY C OXT sing N N 323 GLY OXT HXT sing N N 324 GOL C1 O1 sing N N 325 GOL C1 C2 sing N N 326 GOL C1 H11 sing N N 327 GOL C1 H12 sing N N 328 GOL O1 HO1 sing N N 329 GOL C2 O2 sing N N 330 GOL C2 C3 sing N N 331 GOL C2 H2 sing N N 332 GOL O2 HO2 sing N N 333 GOL C3 O3 sing N N 334 GOL C3 H31 sing N N 335 GOL C3 H32 sing N N 336 GOL O3 HO3 sing N N 337 HIS N CA sing N N 338 HIS N H sing N N 339 HIS N H2 sing N N 340 HIS CA C sing N N 341 HIS CA CB sing N N 342 HIS CA HA sing N N 343 HIS C O doub N N 344 HIS C OXT sing N N 345 HIS CB CG sing N N 346 HIS CB HB2 sing N N 347 HIS CB HB3 sing N N 348 HIS CG ND1 sing Y N 349 HIS CG CD2 doub Y N 350 HIS ND1 CE1 doub Y N 351 HIS ND1 HD1 sing N N 352 HIS CD2 NE2 sing Y N 353 HIS CD2 HD2 sing N N 354 HIS CE1 NE2 sing Y N 355 HIS CE1 HE1 sing N N 356 HIS NE2 HE2 sing N N 357 HIS OXT HXT sing N N 358 HOH O H1 sing N N 359 HOH O H2 sing N N 360 ILE N CA sing N N 361 ILE N H sing N N 362 ILE N H2 sing N N 363 ILE CA C sing N N 364 ILE CA CB sing N N 365 ILE CA HA sing N N 366 ILE C O doub N N 367 ILE C OXT sing N N 368 ILE CB CG1 sing N N 369 ILE CB CG2 sing N N 370 ILE CB HB sing N N 371 ILE CG1 CD1 sing N N 372 ILE CG1 HG12 sing N N 373 ILE CG1 HG13 sing N N 374 ILE CG2 HG21 sing N N 375 ILE CG2 HG22 sing N N 376 ILE CG2 HG23 sing N N 377 ILE CD1 HD11 sing N N 378 ILE CD1 HD12 sing N N 379 ILE CD1 HD13 sing N N 380 ILE OXT HXT sing N N 381 LEU N CA sing N N 382 LEU N H sing N N 383 LEU N H2 sing N N 384 LEU CA C sing N N 385 LEU CA CB sing N N 386 LEU CA HA sing N N 387 LEU C O doub N N 388 LEU C OXT sing N N 389 LEU CB CG sing N N 390 LEU CB HB2 sing N N 391 LEU CB HB3 sing N N 392 LEU CG CD1 sing N N 393 LEU CG CD2 sing N N 394 LEU CG HG sing N N 395 LEU CD1 HD11 sing N N 396 LEU CD1 HD12 sing N N 397 LEU CD1 HD13 sing N N 398 LEU CD2 HD21 sing N N 399 LEU CD2 HD22 sing N N 400 LEU CD2 HD23 sing N N 401 LEU OXT HXT sing N N 402 LYS N CA sing N N 403 LYS N H sing N N 404 LYS N H2 sing N N 405 LYS CA C sing N N 406 LYS CA CB sing N N 407 LYS CA HA sing N N 408 LYS C O doub N N 409 LYS C OXT sing N N 410 LYS CB CG sing N N 411 LYS CB HB2 sing N N 412 LYS CB HB3 sing N N 413 LYS CG CD sing N N 414 LYS CG HG2 sing N N 415 LYS CG HG3 sing N N 416 LYS CD CE sing N N 417 LYS CD HD2 sing N N 418 LYS CD HD3 sing N N 419 LYS CE NZ sing N N 420 LYS CE HE2 sing N N 421 LYS CE HE3 sing N N 422 LYS NZ HZ1 sing N N 423 LYS NZ HZ2 sing N N 424 LYS NZ HZ3 sing N N 425 LYS OXT HXT sing N N 426 MET N CA sing N N 427 MET N H sing N N 428 MET N H2 sing N N 429 MET CA C sing N N 430 MET CA CB sing N N 431 MET CA HA sing N N 432 MET C O doub N N 433 MET C OXT sing N N 434 MET CB CG sing N N 435 MET CB HB2 sing N N 436 MET CB HB3 sing N N 437 MET CG SD sing N N 438 MET CG HG2 sing N N 439 MET CG HG3 sing N N 440 MET SD CE sing N N 441 MET CE HE1 sing N N 442 MET CE HE2 sing N N 443 MET CE HE3 sing N N 444 MET OXT HXT sing N N 445 PHE N CA sing N N 446 PHE N H sing N N 447 PHE N H2 sing N N 448 PHE CA C sing N N 449 PHE CA CB sing N N 450 PHE CA HA sing N N 451 PHE C O doub N N 452 PHE C OXT sing N N 453 PHE CB CG sing N N 454 PHE CB HB2 sing N N 455 PHE CB HB3 sing N N 456 PHE CG CD1 doub Y N 457 PHE CG CD2 sing Y N 458 PHE CD1 CE1 sing Y N 459 PHE CD1 HD1 sing N N 460 PHE CD2 CE2 doub Y N 461 PHE CD2 HD2 sing N N 462 PHE CE1 CZ doub Y N 463 PHE CE1 HE1 sing N N 464 PHE CE2 CZ sing Y N 465 PHE CE2 HE2 sing N N 466 PHE CZ HZ sing N N 467 PHE OXT HXT sing N N 468 PRO N CA sing N N 469 PRO N CD sing N N 470 PRO N H sing N N 471 PRO CA C sing N N 472 PRO CA CB sing N N 473 PRO CA HA sing N N 474 PRO C O doub N N 475 PRO C OXT sing N N 476 PRO CB CG sing N N 477 PRO CB HB2 sing N N 478 PRO CB HB3 sing N N 479 PRO CG CD sing N N 480 PRO CG HG2 sing N N 481 PRO CG HG3 sing N N 482 PRO CD HD2 sing N N 483 PRO CD HD3 sing N N 484 PRO OXT HXT sing N N 485 SER N CA sing N N 486 SER N H sing N N 487 SER N H2 sing N N 488 SER CA C sing N N 489 SER CA CB sing N N 490 SER CA HA sing N N 491 SER C O doub N N 492 SER C OXT sing N N 493 SER CB OG sing N N 494 SER CB HB2 sing N N 495 SER CB HB3 sing N N 496 SER OG HG sing N N 497 SER OXT HXT sing N N 498 THR N CA sing N N 499 THR N H sing N N 500 THR N H2 sing N N 501 THR CA C sing N N 502 THR CA CB sing N N 503 THR CA HA sing N N 504 THR C O doub N N 505 THR C OXT sing N N 506 THR CB OG1 sing N N 507 THR CB CG2 sing N N 508 THR CB HB sing N N 509 THR OG1 HG1 sing N N 510 THR CG2 HG21 sing N N 511 THR CG2 HG22 sing N N 512 THR CG2 HG23 sing N N 513 THR OXT HXT sing N N 514 TYR N CA sing N N 515 TYR N H sing N N 516 TYR N H2 sing N N 517 TYR CA C sing N N 518 TYR CA CB sing N N 519 TYR CA HA sing N N 520 TYR C O doub N N 521 TYR C OXT sing N N 522 TYR CB CG sing N N 523 TYR CB HB2 sing N N 524 TYR CB HB3 sing N N 525 TYR CG CD1 doub Y N 526 TYR CG CD2 sing Y N 527 TYR CD1 CE1 sing Y N 528 TYR CD1 HD1 sing N N 529 TYR CD2 CE2 doub Y N 530 TYR CD2 HD2 sing N N 531 TYR CE1 CZ doub Y N 532 TYR CE1 HE1 sing N N 533 TYR CE2 CZ sing Y N 534 TYR CE2 HE2 sing N N 535 TYR CZ OH sing N N 536 TYR OH HH sing N N 537 TYR OXT HXT sing N N 538 VAL N CA sing N N 539 VAL N H sing N N 540 VAL N H2 sing N N 541 VAL CA C sing N N 542 VAL CA CB sing N N 543 VAL CA HA sing N N 544 VAL C O doub N N 545 VAL C OXT sing N N 546 VAL CB CG1 sing N N 547 VAL CB CG2 sing N N 548 VAL CB HB sing N N 549 VAL CG1 HG11 sing N N 550 VAL CG1 HG12 sing N N 551 VAL CG1 HG13 sing N N 552 VAL CG2 HG21 sing N N 553 VAL CG2 HG22 sing N N 554 VAL CG2 HG23 sing N N 555 VAL OXT HXT sing N N 556 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3D6Y 'double helix' 3D6Y 'b-form double helix' 3D6Y 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 A DC 24 6_555 1.287 -0.095 1.126 30.290 2.110 -9.801 1 B_DG-12:DC12_B B -12 ? B 12 ? 19 1 1 A DA 3 1_555 A DT 23 6_555 -1.469 -0.399 1.320 20.186 -17.530 2.365 2 B_DA-11:DT11_B B -11 ? B 11 ? ? 1 1 A DC 4 1_555 A DG 22 6_555 -1.526 -0.085 -0.026 0.181 -8.062 -2.602 3 B_DC-10:DG10_B B -10 ? B 10 ? 19 1 1 A DC 5 1_555 A DG 21 6_555 -0.712 0.205 -0.050 -2.018 2.108 3.746 4 B_DC-9:DG9_B B -9 ? B 9 ? 19 1 1 A DC 6 1_555 A DG 20 6_555 -0.048 -0.080 -0.481 2.792 -4.118 -1.706 5 B_DC-8:DG8_B B -8 ? B 8 ? 19 1 1 A DT 7 1_555 A DA 19 6_555 -0.432 -0.106 -0.469 3.286 -14.870 3.954 6 B_DT-7:DA7_B B -7 ? B 7 ? 20 1 1 A DC 8 1_555 A DG 18 6_555 -0.213 -0.288 -0.712 12.198 -11.991 -4.057 7 B_DC-6:DG6_B B -6 ? B 6 ? 19 1 1 A DC 9 1_555 A DG 17 6_555 0.197 -0.281 -0.360 2.317 -6.247 -3.338 8 B_DC-5:DG5_B B -5 ? B 5 ? 19 1 1 A DC 10 1_555 A DG 16 6_555 0.095 0.192 -0.397 0.446 -9.039 0.606 9 B_DC-4:DG4_B B -4 ? B 4 ? 19 1 1 A DC 11 1_555 A DG 15 6_555 0.166 -0.032 -0.164 2.734 0.968 -3.902 10 B_DC-3:DG3_B B -3 ? B 3 ? 19 1 1 A DT 12 1_555 A DA 14 6_555 -0.094 0.084 -0.684 29.309 5.062 0.204 11 B_DT-2:DA2_B B -2 ? B 2 ? 20 1 1 A DG 2 1_555 A DC 24 1_555 1.287 -0.095 1.126 30.290 2.110 -9.801 12 B_DG-12:DC12_B B -12 ? B 12 ? 19 1 1 A DA 3 1_555 A DT 23 1_555 -1.469 -0.399 1.320 20.186 -17.530 2.365 13 B_DA-11:DT11_B B -11 ? B 11 ? ? 1 1 A DC 4 1_555 A DG 22 1_555 -1.526 -0.085 -0.026 0.180 -8.062 -2.602 14 B_DC-10:DG10_B B -10 ? B 10 ? 19 1 1 A DC 5 1_555 A DG 21 1_555 -0.712 0.205 -0.050 -2.018 2.108 3.746 15 B_DC-9:DG9_B B -9 ? B 9 ? 19 1 1 A DC 6 1_555 A DG 20 1_555 -0.048 -0.080 -0.481 2.792 -4.118 -1.706 16 B_DC-8:DG8_B B -8 ? B 8 ? 19 1 1 A DT 7 1_555 A DA 19 1_555 -0.432 -0.106 -0.469 3.286 -14.870 3.954 17 B_DT-7:DA7_B B -7 ? B 7 ? 20 1 1 A DC 8 1_555 A DG 18 1_555 -0.213 -0.288 -0.712 12.198 -11.991 -4.057 18 B_DC-6:DG6_B B -6 ? B 6 ? 19 1 1 A DC 9 1_555 A DG 17 1_555 0.197 -0.281 -0.360 2.317 -6.247 -3.338 19 B_DC-5:DG5_B B -5 ? B 5 ? 19 1 1 A DC 10 1_555 A DG 16 1_555 0.095 0.192 -0.397 0.446 -9.039 0.606 20 B_DC-4:DG4_B B -4 ? B 4 ? 19 1 1 A DC 11 1_555 A DG 15 1_555 0.166 -0.032 -0.164 2.734 0.968 -3.902 21 B_DC-3:DG3_B B -3 ? B 3 ? 19 1 1 A DT 12 1_555 A DA 14 1_555 -0.094 0.084 -0.684 29.309 5.062 0.204 22 B_DT-2:DA2_B B -2 ? B 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 A DC 24 6_555 A DA 3 1_555 A DT 23 6_555 1.714 0.085 3.280 6.117 7.216 33.998 -0.987 -1.874 3.473 12.053 -10.218 35.252 1 BB_DG-12DA-11:DT11DC12_BB B -12 ? B 12 ? B -11 ? B 11 ? 1 A DA 3 1_555 A DT 23 6_555 A DC 4 1_555 A DG 22 6_555 0.098 -1.302 3.977 5.781 -3.859 36.488 -1.407 0.803 4.057 -6.095 -9.131 37.122 2 BB_DA-11DC-10:DG10DT11_BB B -11 ? B 11 ? B -10 ? B 10 ? 1 A DC 4 1_555 A DG 22 6_555 A DC 5 1_555 A DG 21 6_555 0.644 -0.661 3.414 -1.860 4.807 35.780 -1.761 -1.307 3.265 7.775 3.008 36.137 3 BB_DC-10DC-9:DG9DG10_BB B -10 ? B 10 ? B -9 ? B 9 ? 1 A DC 5 1_555 A DG 21 6_555 A DC 6 1_555 A DG 20 6_555 -0.887 -0.872 3.067 0.624 2.375 33.399 -1.875 1.634 2.983 4.126 -1.084 33.487 4 BB_DC-9DC-8:DG8DG9_BB B -9 ? B 9 ? B -8 ? B 8 ? 1 A DC 6 1_555 A DG 20 6_555 A DT 7 1_555 A DA 19 6_555 0.022 0.287 3.335 1.332 10.531 31.029 -1.371 0.200 3.255 19.002 -2.403 32.752 5 BB_DC-8DT-7:DA7DG8_BB B -8 ? B 8 ? B -7 ? B 7 ? 1 A DT 7 1_555 A DA 19 6_555 A DC 8 1_555 A DG 18 6_555 0.022 -0.110 3.021 -0.861 1.539 37.681 -0.354 -0.137 3.013 2.381 1.332 37.721 6 BB_DT-7DC-6:DG6DA7_BB B -7 ? B 7 ? B -6 ? B 6 ? 1 A DC 8 1_555 A DG 18 6_555 A DC 9 1_555 A DG 17 6_555 -0.088 -0.504 3.700 -0.614 7.863 28.131 -2.902 0.025 3.437 15.788 1.232 29.195 7 BB_DC-6DC-5:DG5DG6_BB B -6 ? B 6 ? B -5 ? B 5 ? 1 A DC 9 1_555 A DG 17 6_555 A DC 10 1_555 A DG 16 6_555 0.214 -0.452 3.222 3.816 8.247 32.927 -2.043 0.225 3.029 14.215 -6.578 34.124 8 BB_DC-5DC-4:DG4DG5_BB B -5 ? B 5 ? B -4 ? B 4 ? 1 A DC 10 1_555 A DG 16 6_555 A DC 11 1_555 A DG 15 6_555 0.867 -0.311 3.413 -2.250 2.820 38.577 -0.825 -1.591 3.330 4.257 3.397 38.739 9 BB_DC-4DC-3:DG3DG4_BB B -4 ? B 4 ? B -3 ? B 3 ? 1 A DC 11 1_555 A DG 15 6_555 A DT 12 1_555 A DA 14 6_555 -0.762 -0.597 2.752 5.387 3.053 14.737 -3.898 5.829 2.171 11.274 -19.894 15.978 10 BB_DC-3DT-2:DA2DG3_BB B -3 ? B 3 ? B -2 ? B 2 ? 1 A DG 2 1_555 A DC 24 1_555 A DA 3 1_555 A DT 23 1_555 1.714 0.085 3.280 6.117 7.216 33.998 -0.987 -1.874 3.473 12.053 -10.218 35.252 11 BB_DG-12DA-11:DT11DC12_BB B -12 ? B 12 ? B -11 ? B 11 ? 1 A DA 3 1_555 A DT 23 1_555 A DC 4 1_555 A DG 22 1_555 0.098 -1.302 3.977 5.781 -3.859 36.488 -1.407 0.803 4.057 -6.095 -9.131 37.122 12 BB_DA-11DC-10:DG10DT11_BB B -11 ? B 11 ? B -10 ? B 10 ? 1 A DC 4 1_555 A DG 22 1_555 A DC 5 1_555 A DG 21 1_555 0.644 -0.661 3.414 -1.860 4.807 35.780 -1.761 -1.307 3.265 7.775 3.008 36.137 13 BB_DC-10DC-9:DG9DG10_BB B -10 ? B 10 ? B -9 ? B 9 ? 1 A DC 5 1_555 A DG 21 1_555 A DC 6 1_555 A DG 20 1_555 -0.887 -0.872 3.067 0.624 2.375 33.399 -1.875 1.634 2.983 4.126 -1.084 33.487 14 BB_DC-9DC-8:DG8DG9_BB B -9 ? B 9 ? B -8 ? B 8 ? 1 A DC 6 1_555 A DG 20 1_555 A DT 7 1_555 A DA 19 1_555 0.022 0.287 3.335 1.332 10.531 31.029 -1.371 0.200 3.255 19.002 -2.403 32.752 15 BB_DC-8DT-7:DA7DG8_BB B -8 ? B 8 ? B -7 ? B 7 ? 1 A DT 7 1_555 A DA 19 1_555 A DC 8 1_555 A DG 18 1_555 0.022 -0.110 3.021 -0.861 1.539 37.681 -0.354 -0.137 3.013 2.381 1.332 37.721 16 BB_DT-7DC-6:DG6DA7_BB B -7 ? B 7 ? B -6 ? B 6 ? 1 A DC 8 1_555 A DG 18 1_555 A DC 9 1_555 A DG 17 1_555 -0.088 -0.504 3.700 -0.614 7.863 28.131 -2.902 0.025 3.437 15.788 1.232 29.195 17 BB_DC-6DC-5:DG5DG6_BB B -6 ? B 6 ? B -5 ? B 5 ? 1 A DC 9 1_555 A DG 17 1_555 A DC 10 1_555 A DG 16 1_555 0.214 -0.452 3.222 3.816 8.247 32.927 -2.043 0.225 3.029 14.215 -6.578 34.124 18 BB_DC-5DC-4:DG4DG5_BB B -5 ? B 5 ? B -4 ? B 4 ? 1 A DC 10 1_555 A DG 16 1_555 A DC 11 1_555 A DG 15 1_555 0.867 -0.311 3.413 -2.250 2.820 38.577 -0.825 -1.591 3.330 4.257 3.397 38.739 19 BB_DC-4DC-3:DG3DG4_BB B -4 ? B 4 ? B -3 ? B 3 ? 1 A DC 11 1_555 A DG 15 1_555 A DT 12 1_555 A DA 14 1_555 -0.762 -0.597 2.752 5.387 3.053 14.737 -3.898 5.829 2.171 11.274 -19.894 15.978 20 BB_DC-3DT-2:DA2DG3_BB B -3 ? B 3 ? B -2 ? B 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 BERBERINE BER 4 GLYCEROL GOL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1R8D _pdbx_initial_refinement_model.details 'PDB entry 1R8D' #