data_3D7M # _entry.id 3D7M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3D7M pdb_00003d7m 10.2210/pdb3d7m/pdb RCSB RCSB047693 ? ? WWPDB D_1000047693 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-03 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-08-30 6 'Structure model' 1 5 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Refinement description' 7 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' pdbx_initial_refinement_model 9 6 'Structure model' pdbx_entry_details 10 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 4 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 5 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 8 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 9 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 13 4 'Structure model' '_struct_ref_seq_dif.details' 14 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3D7M _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-05-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1GFI 'GDP AlF4-bound starting model' unspecified PDB 1Y3A 'a proposed activation intermediate' unspecified PDB 2G83 'a proposed activation intermediate' unspecified PDB 2HLB 'a proposed activation intermediate' unspecified PDB 1BH2 'a proposed activation intermediate' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Funk, M.A.' 1 'Preininger, A.M.' 2 'Oldham, W.M.' 3 'Meier, S.M.' 4 'Hamm, H.E.' 5 'Iverson, T.M.' 6 # _citation.id primary _citation.title 'Helix dipole movement and conformational variability contribute to allosteric GDP release in Galphai subunits.' _citation.journal_abbrev Biochemistry _citation.journal_volume 48 _citation.page_first 2630 _citation.page_last 2642 _citation.year 2009 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19222191 _citation.pdbx_database_id_DOI 10.1021/bi801853a # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Preininger, A.M.' 1 ? primary 'Funk, M.A.' 2 ? primary 'Oldham, W.M.' 3 ? primary 'Meier, S.M.' 4 ? primary 'Johnston, C.A.' 5 ? primary 'Adhikary, S.' 6 ? primary 'Kimple, A.J.' 7 ? primary 'Siderovski, D.P.' 8 ? primary 'Hamm, H.E.' 9 ? primary 'Iverson, T.M.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Guanine nucleotide-binding protein G(i), alpha-1 subunit' 40364.027 1 ? 'I56C, Q333C' ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'TETRAFLUOROALUMINATE ION' 102.975 1 ? ? ? ? 4 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 5 water nat water 18.015 6 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Adenylate cyclase-inhibiting G alpha protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKICHEAGYSEEECKQYKAVVYSNTIQS IIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLD RIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM NRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIY THFTCATDTKNVCFVFDAVTDVIIKNNLKDCGLF ; _entity_poly.pdbx_seq_one_letter_code_can ;MGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKICHEAGYSEEECKQYKAVVYSNTIQS IIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLD RIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM NRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIY THFTCATDTKNVCFVFDAVTDVIIKNNLKDCGLF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'TETRAFLUOROALUMINATE ION' ALF 4 "GUANOSINE-5'-DIPHOSPHATE" GDP 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 CYS n 1 4 THR n 1 5 LEU n 1 6 SER n 1 7 ALA n 1 8 GLU n 1 9 ASP n 1 10 LYS n 1 11 ALA n 1 12 ALA n 1 13 VAL n 1 14 GLU n 1 15 ARG n 1 16 SER n 1 17 LYS n 1 18 MET n 1 19 ILE n 1 20 ASP n 1 21 ARG n 1 22 ASN n 1 23 LEU n 1 24 ARG n 1 25 GLU n 1 26 ASP n 1 27 GLY n 1 28 GLU n 1 29 LYS n 1 30 ALA n 1 31 ALA n 1 32 ARG n 1 33 GLU n 1 34 VAL n 1 35 LYS n 1 36 LEU n 1 37 LEU n 1 38 LEU n 1 39 LEU n 1 40 GLY n 1 41 ALA n 1 42 GLY n 1 43 GLU n 1 44 SER n 1 45 GLY n 1 46 LYS n 1 47 SER n 1 48 THR n 1 49 ILE n 1 50 VAL n 1 51 LYS n 1 52 GLN n 1 53 MET n 1 54 LYS n 1 55 ILE n 1 56 CYS n 1 57 HIS n 1 58 GLU n 1 59 ALA n 1 60 GLY n 1 61 TYR n 1 62 SER n 1 63 GLU n 1 64 GLU n 1 65 GLU n 1 66 CYS n 1 67 LYS n 1 68 GLN n 1 69 TYR n 1 70 LYS n 1 71 ALA n 1 72 VAL n 1 73 VAL n 1 74 TYR n 1 75 SER n 1 76 ASN n 1 77 THR n 1 78 ILE n 1 79 GLN n 1 80 SER n 1 81 ILE n 1 82 ILE n 1 83 ALA n 1 84 ILE n 1 85 ILE n 1 86 ARG n 1 87 ALA n 1 88 MET n 1 89 GLY n 1 90 ARG n 1 91 LEU n 1 92 LYS n 1 93 ILE n 1 94 ASP n 1 95 PHE n 1 96 GLY n 1 97 ASP n 1 98 ALA n 1 99 ALA n 1 100 ARG n 1 101 ALA n 1 102 ASP n 1 103 ASP n 1 104 ALA n 1 105 ARG n 1 106 GLN n 1 107 LEU n 1 108 PHE n 1 109 VAL n 1 110 LEU n 1 111 ALA n 1 112 GLY n 1 113 ALA n 1 114 ALA n 1 115 GLU n 1 116 GLU n 1 117 GLY n 1 118 PHE n 1 119 MET n 1 120 THR n 1 121 ALA n 1 122 GLU n 1 123 LEU n 1 124 ALA n 1 125 GLY n 1 126 VAL n 1 127 ILE n 1 128 LYS n 1 129 ARG n 1 130 LEU n 1 131 TRP n 1 132 LYS n 1 133 ASP n 1 134 SER n 1 135 GLY n 1 136 VAL n 1 137 GLN n 1 138 ALA n 1 139 CYS n 1 140 PHE n 1 141 ASN n 1 142 ARG n 1 143 SER n 1 144 ARG n 1 145 GLU n 1 146 TYR n 1 147 GLN n 1 148 LEU n 1 149 ASN n 1 150 ASP n 1 151 SER n 1 152 ALA n 1 153 ALA n 1 154 TYR n 1 155 TYR n 1 156 LEU n 1 157 ASN n 1 158 ASP n 1 159 LEU n 1 160 ASP n 1 161 ARG n 1 162 ILE n 1 163 ALA n 1 164 GLN n 1 165 PRO n 1 166 ASN n 1 167 TYR n 1 168 ILE n 1 169 PRO n 1 170 THR n 1 171 GLN n 1 172 GLN n 1 173 ASP n 1 174 VAL n 1 175 LEU n 1 176 ARG n 1 177 THR n 1 178 ARG n 1 179 VAL n 1 180 LYS n 1 181 THR n 1 182 THR n 1 183 GLY n 1 184 ILE n 1 185 VAL n 1 186 GLU n 1 187 THR n 1 188 HIS n 1 189 PHE n 1 190 THR n 1 191 PHE n 1 192 LYS n 1 193 ASP n 1 194 LEU n 1 195 HIS n 1 196 PHE n 1 197 LYS n 1 198 MET n 1 199 PHE n 1 200 ASP n 1 201 VAL n 1 202 GLY n 1 203 GLY n 1 204 GLN n 1 205 ARG n 1 206 SER n 1 207 GLU n 1 208 ARG n 1 209 LYS n 1 210 LYS n 1 211 TRP n 1 212 ILE n 1 213 HIS n 1 214 CYS n 1 215 PHE n 1 216 GLU n 1 217 GLY n 1 218 VAL n 1 219 THR n 1 220 ALA n 1 221 ILE n 1 222 ILE n 1 223 PHE n 1 224 CYS n 1 225 VAL n 1 226 ALA n 1 227 LEU n 1 228 SER n 1 229 ASP n 1 230 TYR n 1 231 ASP n 1 232 LEU n 1 233 VAL n 1 234 LEU n 1 235 ALA n 1 236 GLU n 1 237 ASP n 1 238 GLU n 1 239 GLU n 1 240 MET n 1 241 ASN n 1 242 ARG n 1 243 MET n 1 244 HIS n 1 245 GLU n 1 246 SER n 1 247 MET n 1 248 LYS n 1 249 LEU n 1 250 PHE n 1 251 ASP n 1 252 SER n 1 253 ILE n 1 254 CYS n 1 255 ASN n 1 256 ASN n 1 257 LYS n 1 258 TRP n 1 259 PHE n 1 260 THR n 1 261 ASP n 1 262 THR n 1 263 SER n 1 264 ILE n 1 265 ILE n 1 266 LEU n 1 267 PHE n 1 268 LEU n 1 269 ASN n 1 270 LYS n 1 271 LYS n 1 272 ASP n 1 273 LEU n 1 274 PHE n 1 275 GLU n 1 276 GLU n 1 277 LYS n 1 278 ILE n 1 279 LYS n 1 280 LYS n 1 281 SER n 1 282 PRO n 1 283 LEU n 1 284 THR n 1 285 ILE n 1 286 CYS n 1 287 TYR n 1 288 PRO n 1 289 GLU n 1 290 TYR n 1 291 ALA n 1 292 GLY n 1 293 SER n 1 294 ASN n 1 295 THR n 1 296 TYR n 1 297 GLU n 1 298 GLU n 1 299 ALA n 1 300 ALA n 1 301 ALA n 1 302 TYR n 1 303 ILE n 1 304 GLN n 1 305 CYS n 1 306 GLN n 1 307 PHE n 1 308 GLU n 1 309 ASP n 1 310 LEU n 1 311 ASN n 1 312 LYS n 1 313 ARG n 1 314 LYS n 1 315 ASP n 1 316 THR n 1 317 LYS n 1 318 GLU n 1 319 ILE n 1 320 TYR n 1 321 THR n 1 322 HIS n 1 323 PHE n 1 324 THR n 1 325 CYS n 1 326 ALA n 1 327 THR n 1 328 ASP n 1 329 THR n 1 330 LYS n 1 331 ASN n 1 332 VAL n 1 333 CYS n 1 334 PHE n 1 335 VAL n 1 336 PHE n 1 337 ASP n 1 338 ALA n 1 339 VAL n 1 340 THR n 1 341 ASP n 1 342 VAL n 1 343 ILE n 1 344 ILE n 1 345 LYS n 1 346 ASN n 1 347 ASN n 1 348 LEU n 1 349 LYS n 1 350 ASP n 1 351 CYS n 1 352 GLY n 1 353 LEU n 1 354 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name rat _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Gnai1, Gnai-1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PT7-5 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ALF non-polymer . 'TETRAFLUOROALUMINATE ION' ? 'Al F4 -1' 102.975 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLY 2 2 ? ? ? A . n A 1 3 CYS 3 3 ? ? ? A . n A 1 4 THR 4 4 ? ? ? A . n A 1 5 LEU 5 5 ? ? ? A . n A 1 6 SER 6 6 ? ? ? A . n A 1 7 ALA 7 7 ? ? ? A . n A 1 8 GLU 8 8 ? ? ? A . n A 1 9 ASP 9 9 ? ? ? A . n A 1 10 LYS 10 10 ? ? ? A . n A 1 11 ALA 11 11 ? ? ? A . n A 1 12 ALA 12 12 ? ? ? A . n A 1 13 VAL 13 13 ? ? ? A . n A 1 14 GLU 14 14 ? ? ? A . n A 1 15 ARG 15 15 ? ? ? A . n A 1 16 SER 16 16 ? ? ? A . n A 1 17 LYS 17 17 ? ? ? A . n A 1 18 MET 18 18 ? ? ? A . n A 1 19 ILE 19 19 ? ? ? A . n A 1 20 ASP 20 20 ? ? ? A . n A 1 21 ARG 21 21 ? ? ? A . n A 1 22 ASN 22 22 ? ? ? A . n A 1 23 LEU 23 23 ? ? ? A . n A 1 24 ARG 24 24 ? ? ? A . n A 1 25 GLU 25 25 ? ? ? A . n A 1 26 ASP 26 26 ? ? ? A . n A 1 27 GLY 27 27 ? ? ? A . n A 1 28 GLU 28 28 ? ? ? A . n A 1 29 LYS 29 29 ? ? ? A . n A 1 30 ALA 30 30 ? ? ? A . n A 1 31 ALA 31 31 ? ? ? A . n A 1 32 ARG 32 32 ? ? ? A . n A 1 33 GLU 33 33 ? ? ? A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 CYS 66 66 66 CYS CYS A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 MET 88 88 88 MET MET A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 GLY 112 112 ? ? ? A . n A 1 113 ALA 113 113 ? ? ? A . n A 1 114 ALA 114 114 ? ? ? A . n A 1 115 GLU 115 115 ? ? ? A . n A 1 116 GLU 116 116 ? ? ? A . n A 1 117 GLY 117 117 ? ? ? A . n A 1 118 PHE 118 118 ? ? ? A . n A 1 119 MET 119 119 ? ? ? A . n A 1 120 THR 120 120 ? ? ? A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 TRP 131 131 131 TRP TRP A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 SER 134 134 134 SER SER A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 GLN 137 137 137 GLN GLN A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 CYS 139 139 139 CYS CYS A . n A 1 140 PHE 140 140 140 PHE PHE A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 TYR 146 146 146 TYR TYR A . n A 1 147 GLN 147 147 147 GLN GLN A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 ASN 149 149 149 ASN ASN A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 TYR 154 154 154 TYR TYR A . n A 1 155 TYR 155 155 155 TYR TYR A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 ASP 160 160 160 ASP ASP A . n A 1 161 ARG 161 161 161 ARG ARG A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 GLN 164 164 164 GLN GLN A . n A 1 165 PRO 165 165 165 PRO PRO A . n A 1 166 ASN 166 166 166 ASN ASN A . n A 1 167 TYR 167 167 167 TYR TYR A . n A 1 168 ILE 168 168 168 ILE ILE A . n A 1 169 PRO 169 169 169 PRO PRO A . n A 1 170 THR 170 170 170 THR THR A . n A 1 171 GLN 171 171 171 GLN GLN A . n A 1 172 GLN 172 172 172 GLN GLN A . n A 1 173 ASP 173 173 173 ASP ASP A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 ARG 176 176 176 ARG ARG A . n A 1 177 THR 177 177 177 THR THR A . n A 1 178 ARG 178 178 178 ARG ARG A . n A 1 179 VAL 179 179 179 VAL VAL A . n A 1 180 LYS 180 180 180 LYS LYS A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 ILE 184 184 184 ILE ILE A . n A 1 185 VAL 185 185 185 VAL VAL A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 THR 187 187 187 THR THR A . n A 1 188 HIS 188 188 188 HIS HIS A . n A 1 189 PHE 189 189 189 PHE PHE A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 PHE 191 191 191 PHE PHE A . n A 1 192 LYS 192 192 192 LYS LYS A . n A 1 193 ASP 193 193 193 ASP ASP A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 HIS 195 195 195 HIS HIS A . n A 1 196 PHE 196 196 196 PHE PHE A . n A 1 197 LYS 197 197 197 LYS LYS A . n A 1 198 MET 198 198 198 MET MET A . n A 1 199 PHE 199 199 199 PHE PHE A . n A 1 200 ASP 200 200 200 ASP ASP A . n A 1 201 VAL 201 201 201 VAL VAL A . n A 1 202 GLY 202 202 202 GLY GLY A . n A 1 203 GLY 203 203 203 GLY GLY A . n A 1 204 GLN 204 204 204 GLN GLN A . n A 1 205 ARG 205 205 205 ARG ARG A . n A 1 206 SER 206 206 206 SER SER A . n A 1 207 GLU 207 207 207 GLU GLU A . n A 1 208 ARG 208 208 208 ARG ARG A . n A 1 209 LYS 209 209 209 LYS LYS A . n A 1 210 LYS 210 210 210 LYS LYS A . n A 1 211 TRP 211 211 211 TRP TRP A . n A 1 212 ILE 212 212 212 ILE ILE A . n A 1 213 HIS 213 213 213 HIS HIS A . n A 1 214 CYS 214 214 214 CYS CYS A . n A 1 215 PHE 215 215 215 PHE PHE A . n A 1 216 GLU 216 216 216 GLU GLU A . n A 1 217 GLY 217 217 217 GLY GLY A . n A 1 218 VAL 218 218 218 VAL VAL A . n A 1 219 THR 219 219 219 THR THR A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 ILE 221 221 221 ILE ILE A . n A 1 222 ILE 222 222 222 ILE ILE A . n A 1 223 PHE 223 223 223 PHE PHE A . n A 1 224 CYS 224 224 224 CYS CYS A . n A 1 225 VAL 225 225 225 VAL VAL A . n A 1 226 ALA 226 226 226 ALA ALA A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 SER 228 228 228 SER SER A . n A 1 229 ASP 229 229 229 ASP ASP A . n A 1 230 TYR 230 230 230 TYR TYR A . n A 1 231 ASP 231 231 231 ASP ASP A . n A 1 232 LEU 232 232 232 LEU LEU A . n A 1 233 VAL 233 233 233 VAL VAL A . n A 1 234 LEU 234 234 234 LEU LEU A . n A 1 235 ALA 235 235 235 ALA ALA A . n A 1 236 GLU 236 236 236 GLU GLU A . n A 1 237 ASP 237 237 237 ASP ASP A . n A 1 238 GLU 238 238 238 GLU GLU A . n A 1 239 GLU 239 239 239 GLU GLU A . n A 1 240 MET 240 240 240 MET MET A . n A 1 241 ASN 241 241 241 ASN ASN A . n A 1 242 ARG 242 242 242 ARG ARG A . n A 1 243 MET 243 243 243 MET MET A . n A 1 244 HIS 244 244 244 HIS HIS A . n A 1 245 GLU 245 245 245 GLU GLU A . n A 1 246 SER 246 246 246 SER SER A . n A 1 247 MET 247 247 247 MET MET A . n A 1 248 LYS 248 248 248 LYS LYS A . n A 1 249 LEU 249 249 249 LEU LEU A . n A 1 250 PHE 250 250 250 PHE PHE A . n A 1 251 ASP 251 251 251 ASP ASP A . n A 1 252 SER 252 252 252 SER SER A . n A 1 253 ILE 253 253 253 ILE ILE A . n A 1 254 CYS 254 254 254 CYS CYS A . n A 1 255 ASN 255 255 255 ASN ASN A . n A 1 256 ASN 256 256 256 ASN ASN A . n A 1 257 LYS 257 257 257 LYS LYS A . n A 1 258 TRP 258 258 258 TRP TRP A . n A 1 259 PHE 259 259 259 PHE PHE A . n A 1 260 THR 260 260 260 THR THR A . n A 1 261 ASP 261 261 261 ASP ASP A . n A 1 262 THR 262 262 262 THR THR A . n A 1 263 SER 263 263 263 SER SER A . n A 1 264 ILE 264 264 264 ILE ILE A . n A 1 265 ILE 265 265 265 ILE ILE A . n A 1 266 LEU 266 266 266 LEU LEU A . n A 1 267 PHE 267 267 267 PHE PHE A . n A 1 268 LEU 268 268 268 LEU LEU A . n A 1 269 ASN 269 269 269 ASN ASN A . n A 1 270 LYS 270 270 270 LYS LYS A . n A 1 271 LYS 271 271 271 LYS LYS A . n A 1 272 ASP 272 272 272 ASP ASP A . n A 1 273 LEU 273 273 273 LEU LEU A . n A 1 274 PHE 274 274 274 PHE PHE A . n A 1 275 GLU 275 275 275 GLU GLU A . n A 1 276 GLU 276 276 276 GLU GLU A . n A 1 277 LYS 277 277 277 LYS LYS A . n A 1 278 ILE 278 278 278 ILE ILE A . n A 1 279 LYS 279 279 279 LYS LYS A . n A 1 280 LYS 280 280 280 LYS LYS A . n A 1 281 SER 281 281 281 SER SER A . n A 1 282 PRO 282 282 282 PRO PRO A . n A 1 283 LEU 283 283 283 LEU LEU A . n A 1 284 THR 284 284 284 THR THR A . n A 1 285 ILE 285 285 285 ILE ILE A . n A 1 286 CYS 286 286 286 CYS CYS A . n A 1 287 TYR 287 287 287 TYR TYR A . n A 1 288 PRO 288 288 288 PRO PRO A . n A 1 289 GLU 289 289 289 GLU GLU A . n A 1 290 TYR 290 290 290 TYR TYR A . n A 1 291 ALA 291 291 291 ALA ALA A . n A 1 292 GLY 292 292 292 GLY GLY A . n A 1 293 SER 293 293 293 SER SER A . n A 1 294 ASN 294 294 294 ASN ASN A . n A 1 295 THR 295 295 295 THR THR A . n A 1 296 TYR 296 296 296 TYR TYR A . n A 1 297 GLU 297 297 297 GLU GLU A . n A 1 298 GLU 298 298 298 GLU GLU A . n A 1 299 ALA 299 299 299 ALA ALA A . n A 1 300 ALA 300 300 300 ALA ALA A . n A 1 301 ALA 301 301 301 ALA ALA A . n A 1 302 TYR 302 302 302 TYR TYR A . n A 1 303 ILE 303 303 303 ILE ILE A . n A 1 304 GLN 304 304 304 GLN GLN A . n A 1 305 CYS 305 305 305 CYS CYS A . n A 1 306 GLN 306 306 306 GLN GLN A . n A 1 307 PHE 307 307 307 PHE PHE A . n A 1 308 GLU 308 308 308 GLU GLU A . n A 1 309 ASP 309 309 309 ASP ASP A . n A 1 310 LEU 310 310 310 LEU LEU A . n A 1 311 ASN 311 311 311 ASN ASN A . n A 1 312 LYS 312 312 312 LYS LYS A . n A 1 313 ARG 313 313 313 ARG ARG A . n A 1 314 LYS 314 314 314 LYS LYS A . n A 1 315 ASP 315 315 315 ASP ASP A . n A 1 316 THR 316 316 316 THR THR A . n A 1 317 LYS 317 317 317 LYS LYS A . n A 1 318 GLU 318 318 318 GLU GLU A . n A 1 319 ILE 319 319 319 ILE ILE A . n A 1 320 TYR 320 320 320 TYR TYR A . n A 1 321 THR 321 321 321 THR THR A . n A 1 322 HIS 322 322 322 HIS HIS A . n A 1 323 PHE 323 323 323 PHE PHE A . n A 1 324 THR 324 324 324 THR THR A . n A 1 325 CYS 325 325 325 CYS CYS A . n A 1 326 ALA 326 326 326 ALA ALA A . n A 1 327 THR 327 327 327 THR THR A . n A 1 328 ASP 328 328 328 ASP ASP A . n A 1 329 THR 329 329 329 THR THR A . n A 1 330 LYS 330 330 330 LYS LYS A . n A 1 331 ASN 331 331 331 ASN ASN A . n A 1 332 VAL 332 332 332 VAL VAL A . n A 1 333 CYS 333 333 333 CYS CYS A . n A 1 334 PHE 334 334 334 PHE PHE A . n A 1 335 VAL 335 335 335 VAL VAL A . n A 1 336 PHE 336 336 336 PHE PHE A . n A 1 337 ASP 337 337 337 ASP ASP A . n A 1 338 ALA 338 338 338 ALA ALA A . n A 1 339 VAL 339 339 339 VAL VAL A . n A 1 340 THR 340 340 340 THR THR A . n A 1 341 ASP 341 341 341 ASP ASP A . n A 1 342 VAL 342 342 342 VAL VAL A . n A 1 343 ILE 343 343 343 ILE ILE A . n A 1 344 ILE 344 344 344 ILE ILE A . n A 1 345 LYS 345 345 345 LYS LYS A . n A 1 346 ASN 346 346 346 ASN ASN A . n A 1 347 ASN 347 347 347 ASN ASN A . n A 1 348 LEU 348 348 ? ? ? A . n A 1 349 LYS 349 349 ? ? ? A . n A 1 350 ASP 350 350 ? ? ? A . n A 1 351 CYS 351 351 ? ? ? A . n A 1 352 GLY 352 352 ? ? ? A . n A 1 353 LEU 353 353 ? ? ? A . n A 1 354 PHE 354 354 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 356 356 MG MG A . C 3 ALF 1 357 357 ALF ALF A . D 4 GDP 1 355 355 GDP GDP A . E 5 HOH 1 403 403 HOH HOH A . E 5 HOH 2 404 404 HOH HOH A . E 5 HOH 3 412 412 HOH HOH A . E 5 HOH 4 436 436 HOH HOH A . E 5 HOH 5 441 441 HOH HOH A . E 5 HOH 6 475 475 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 4 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 # _cell.entry_id 3D7M _cell.length_a 79.659 _cell.length_b 79.659 _cell.length_c 114.587 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D7M _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3D7M _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '16% PEG 3350, 0.24 M Li(CH3COO), 0.1 M Bis-Tris, 0.01 M SrCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2006-04-10 _diffrn_detector.details 'vertical mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'cryogenically-cooled Si 111 double-crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 17-ID # _reflns.entry_id 3D7M _reflns.d_resolution_high 2.900 _reflns.d_resolution_low 50.000 _reflns.number_obs 8576 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 12.600 _reflns.pdbx_chi_squared 0.876 _reflns.percent_possible_obs 96.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -0.5 _reflns.number_all ? _reflns.pdbx_Rsym_value 0.054 _reflns.B_iso_Wilson_estimate 103.635 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 2.95 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.301 _reflns_shell.meanI_over_sigI_obs 1.88 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.666 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 337 _reflns_shell.percent_possible_all 80.60 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3D7M _refine.ls_d_res_high 2.900 _refine.ls_d_res_low 50.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.000 _refine.ls_number_reflns_obs 8576 _refine.ls_R_factor_R_work 0.249 _refine.ls_R_factor_R_free 0.294 _refine.ls_percent_reflns_R_free 9.800 _refine.ls_number_reflns_R_free 851 _refine.B_iso_mean 98.388 _refine.solvent_model_param_bsol 71.13 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.overall_FOM_work_R_set 0.758 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDB entry 1GFI' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2456 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 2496 _refine_hist.d_res_high 2.900 _refine_hist.d_res_low 50.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_mcbond_it ? 1.450 1.500 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 1.665 2.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 2.587 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 2.777 2.500 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param ? 'X-RAY DIFFRACTION' 2 fsttt.par ? 'X-RAY DIFFRACTION' 3 water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 3D7M _struct.title 'Crystal Structure of the G Protein Fast-Exchange Double Mutant I56C/Q333C' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D7M _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'nucleotide binding, allosteric, GTP-binding, Lipoprotein, Myristate, Nucleotide-binding, Palmitate, Transducer, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GNAI1_RAT _struct_ref.pdbx_db_accession P10824 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQS IIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLD RIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM NRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIY THFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3D7M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 354 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P10824 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 354 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 354 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3D7M CYS A 56 ? UNP P10824 ILE 56 'engineered mutation' 56 1 1 3D7M CYS A 333 ? UNP P10824 GLN 333 'engineered mutation' 333 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 45 ? GLU A 58 ? GLY A 45 GLU A 58 1 ? 14 HELX_P HELX_P2 2 SER A 62 ? GLN A 68 ? SER A 62 GLN A 68 1 ? 7 HELX_P HELX_P3 3 TYR A 69 ? LYS A 92 ? TYR A 69 LYS A 92 1 ? 24 HELX_P HELX_P4 4 ALA A 99 ? ALA A 111 ? ALA A 99 ALA A 111 1 ? 13 HELX_P HELX_P5 5 ALA A 121 ? ASP A 133 ? ALA A 121 ASP A 133 1 ? 13 HELX_P HELX_P6 6 ASP A 133 ? ARG A 142 ? ASP A 133 ARG A 142 1 ? 10 HELX_P HELX_P7 7 SER A 143 ? TYR A 146 ? SER A 143 TYR A 146 5 ? 4 HELX_P HELX_P8 8 SER A 151 ? ASP A 158 ? SER A 151 ASP A 158 1 ? 8 HELX_P HELX_P9 9 ASP A 158 ? ALA A 163 ? ASP A 158 ALA A 163 1 ? 6 HELX_P HELX_P10 10 THR A 170 ? THR A 177 ? THR A 170 THR A 177 1 ? 8 HELX_P HELX_P11 11 TRP A 211 ? PHE A 215 ? TRP A 211 PHE A 215 5 ? 5 HELX_P HELX_P12 12 SER A 228 ? TYR A 230 ? SER A 228 TYR A 230 5 ? 3 HELX_P HELX_P13 13 ASN A 241 ? ASN A 256 ? ASN A 241 ASN A 256 1 ? 16 HELX_P HELX_P14 14 LYS A 257 ? THR A 260 ? LYS A 257 THR A 260 5 ? 4 HELX_P HELX_P15 15 LYS A 270 ? ILE A 278 ? LYS A 270 ILE A 278 1 ? 9 HELX_P HELX_P16 16 LYS A 279 ? SER A 281 ? LYS A 279 SER A 281 5 ? 3 HELX_P HELX_P17 17 PRO A 282 ? CYS A 286 ? PRO A 282 CYS A 286 5 ? 5 HELX_P HELX_P18 18 THR A 295 ? ASP A 309 ? THR A 295 ASP A 309 1 ? 15 HELX_P HELX_P19 19 ARG A 313 ? LYS A 317 ? ARG A 313 LYS A 317 5 ? 5 HELX_P HELX_P20 20 ASP A 328 ? ASN A 347 ? ASP A 328 ASN A 347 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 333 SG ? ? A CYS 56 A CYS 333 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc1 metalc ? ? A SER 47 OG ? ? ? 1_555 B MG . MG ? ? A SER 47 A MG 356 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc2 metalc ? ? A THR 181 OG1 ? ? ? 1_555 B MG . MG ? ? A THR 181 A MG 356 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc3 metalc ? ? D GDP . O2B ? ? ? 1_555 B MG . MG ? ? A GDP 355 A MG 356 1_555 ? ? ? ? ? ? ? 2.294 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 47 ? A SER 47 ? 1_555 MG ? B MG . ? A MG 356 ? 1_555 OG1 ? A THR 181 ? A THR 181 ? 1_555 85.0 ? 2 OG ? A SER 47 ? A SER 47 ? 1_555 MG ? B MG . ? A MG 356 ? 1_555 O2B ? D GDP . ? A GDP 355 ? 1_555 73.3 ? 3 OG1 ? A THR 181 ? A THR 181 ? 1_555 MG ? B MG . ? A MG 356 ? 1_555 O2B ? D GDP . ? A GDP 355 ? 1_555 138.8 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 56 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 333 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 56 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 333 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 184 ? PHE A 191 ? ILE A 184 PHE A 191 A 2 LEU A 194 ? VAL A 201 ? LEU A 194 VAL A 201 A 3 LYS A 35 ? GLY A 40 ? LYS A 35 GLY A 40 A 4 ALA A 220 ? ALA A 226 ? ALA A 220 ALA A 226 A 5 SER A 263 ? ASN A 269 ? SER A 263 ASN A 269 A 6 ILE A 319 ? PHE A 323 ? ILE A 319 PHE A 323 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 189 ? N PHE A 189 O PHE A 196 ? O PHE A 196 A 2 3 O PHE A 199 ? O PHE A 199 N LEU A 38 ? N LEU A 38 A 3 4 N LEU A 37 ? N LEU A 37 O ILE A 222 ? O ILE A 222 A 4 5 N PHE A 223 ? N PHE A 223 O ILE A 265 ? O ILE A 265 A 5 6 N LEU A 268 ? N LEU A 268 O HIS A 322 ? O HIS A 322 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 356 ? 3 'BINDING SITE FOR RESIDUE MG A 356' AC2 Software A ALF 357 ? 10 'BINDING SITE FOR RESIDUE ALF A 357' AC3 Software A GDP 355 ? 21 'BINDING SITE FOR RESIDUE GDP A 355' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 SER A 47 ? SER A 47 . ? 1_555 ? 2 AC1 3 THR A 181 ? THR A 181 . ? 1_555 ? 3 AC1 3 HOH E . ? HOH A 412 . ? 1_555 ? 4 AC2 10 ALA A 41 ? ALA A 41 . ? 1_555 ? 5 AC2 10 GLY A 42 ? GLY A 42 . ? 1_555 ? 6 AC2 10 GLU A 43 ? GLU A 43 . ? 1_555 ? 7 AC2 10 LYS A 46 ? LYS A 46 . ? 1_555 ? 8 AC2 10 ARG A 178 ? ARG A 178 . ? 1_555 ? 9 AC2 10 LYS A 180 ? LYS A 180 . ? 1_555 ? 10 AC2 10 THR A 181 ? THR A 181 . ? 1_555 ? 11 AC2 10 GLY A 202 ? GLY A 202 . ? 1_555 ? 12 AC2 10 GLY A 203 ? GLY A 203 . ? 1_555 ? 13 AC2 10 GLN A 204 ? GLN A 204 . ? 1_555 ? 14 AC3 21 GLU A 43 ? GLU A 43 . ? 1_555 ? 15 AC3 21 SER A 44 ? SER A 44 . ? 1_555 ? 16 AC3 21 GLY A 45 ? GLY A 45 . ? 1_555 ? 17 AC3 21 LYS A 46 ? LYS A 46 . ? 1_555 ? 18 AC3 21 SER A 47 ? SER A 47 . ? 1_555 ? 19 AC3 21 THR A 48 ? THR A 48 . ? 1_555 ? 20 AC3 21 ASP A 150 ? ASP A 150 . ? 1_555 ? 21 AC3 21 SER A 151 ? SER A 151 . ? 1_555 ? 22 AC3 21 LEU A 175 ? LEU A 175 . ? 1_555 ? 23 AC3 21 ARG A 176 ? ARG A 176 . ? 1_555 ? 24 AC3 21 THR A 177 ? THR A 177 . ? 1_555 ? 25 AC3 21 ARG A 178 ? ARG A 178 . ? 1_555 ? 26 AC3 21 ASN A 269 ? ASN A 269 . ? 1_555 ? 27 AC3 21 LYS A 270 ? LYS A 270 . ? 1_555 ? 28 AC3 21 ASP A 272 ? ASP A 272 . ? 1_555 ? 29 AC3 21 LEU A 273 ? LEU A 273 . ? 1_555 ? 30 AC3 21 CYS A 325 ? CYS A 325 . ? 1_555 ? 31 AC3 21 ALA A 326 ? ALA A 326 . ? 1_555 ? 32 AC3 21 HOH E . ? HOH A 403 . ? 1_555 ? 33 AC3 21 HOH E . ? HOH A 404 . ? 1_555 ? 34 AC3 21 HOH E . ? HOH A 412 . ? 1_555 ? # _pdbx_entry_details.entry_id 3D7M _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 325 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 325 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.707 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.105 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A CYS 56 ? ? CB A CYS 56 ? ? SG A CYS 56 ? ? 122.06 114.20 7.86 1.10 N 2 1 CA A CYS 325 ? ? CB A CYS 325 ? ? SG A CYS 325 ? ? 100.86 114.00 -13.14 1.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 61 ? ? 0.41 116.80 2 1 ASP A 133 ? ? -23.88 129.84 3 1 ASN A 166 ? ? -76.12 30.78 4 1 THR A 177 ? ? -47.86 159.50 5 1 ASP A 193 ? ? 76.66 -10.72 6 1 ARG A 208 ? ? -55.56 0.78 7 1 GLU A 216 ? ? -38.95 -87.82 8 1 SER A 228 ? ? -69.86 15.44 9 1 GLU A 239 ? ? -109.60 53.15 10 1 TRP A 258 ? ? -63.54 1.32 11 1 SER A 281 ? ? -170.09 136.86 12 1 TYR A 290 ? ? -48.29 108.64 13 1 ALA A 326 ? ? -39.07 -25.94 # _pdbx_phasing_MR.entry_id 3D7M _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.900 _pdbx_phasing_MR.d_res_low_rotation 37.640 _pdbx_phasing_MR.d_res_high_translation 2.900 _pdbx_phasing_MR.d_res_low_translation 37.640 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLY 2 ? A GLY 2 3 1 Y 1 A CYS 3 ? A CYS 3 4 1 Y 1 A THR 4 ? A THR 4 5 1 Y 1 A LEU 5 ? A LEU 5 6 1 Y 1 A SER 6 ? A SER 6 7 1 Y 1 A ALA 7 ? A ALA 7 8 1 Y 1 A GLU 8 ? A GLU 8 9 1 Y 1 A ASP 9 ? A ASP 9 10 1 Y 1 A LYS 10 ? A LYS 10 11 1 Y 1 A ALA 11 ? A ALA 11 12 1 Y 1 A ALA 12 ? A ALA 12 13 1 Y 1 A VAL 13 ? A VAL 13 14 1 Y 1 A GLU 14 ? A GLU 14 15 1 Y 1 A ARG 15 ? A ARG 15 16 1 Y 1 A SER 16 ? A SER 16 17 1 Y 1 A LYS 17 ? A LYS 17 18 1 Y 1 A MET 18 ? A MET 18 19 1 Y 1 A ILE 19 ? A ILE 19 20 1 Y 1 A ASP 20 ? A ASP 20 21 1 Y 1 A ARG 21 ? A ARG 21 22 1 Y 1 A ASN 22 ? A ASN 22 23 1 Y 1 A LEU 23 ? A LEU 23 24 1 Y 1 A ARG 24 ? A ARG 24 25 1 Y 1 A GLU 25 ? A GLU 25 26 1 Y 1 A ASP 26 ? A ASP 26 27 1 Y 1 A GLY 27 ? A GLY 27 28 1 Y 1 A GLU 28 ? A GLU 28 29 1 Y 1 A LYS 29 ? A LYS 29 30 1 Y 1 A ALA 30 ? A ALA 30 31 1 Y 1 A ALA 31 ? A ALA 31 32 1 Y 1 A ARG 32 ? A ARG 32 33 1 Y 1 A GLU 33 ? A GLU 33 34 1 Y 1 A GLY 112 ? A GLY 112 35 1 Y 1 A ALA 113 ? A ALA 113 36 1 Y 1 A ALA 114 ? A ALA 114 37 1 Y 1 A GLU 115 ? A GLU 115 38 1 Y 1 A GLU 116 ? A GLU 116 39 1 Y 1 A GLY 117 ? A GLY 117 40 1 Y 1 A PHE 118 ? A PHE 118 41 1 Y 1 A MET 119 ? A MET 119 42 1 Y 1 A THR 120 ? A THR 120 43 1 Y 1 A LEU 348 ? A LEU 348 44 1 Y 1 A LYS 349 ? A LYS 349 45 1 Y 1 A ASP 350 ? A ASP 350 46 1 Y 1 A CYS 351 ? A CYS 351 47 1 Y 1 A GLY 352 ? A GLY 352 48 1 Y 1 A LEU 353 ? A LEU 353 49 1 Y 1 A PHE 354 ? A PHE 354 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ALF AL AL N N 14 ALF F1 F N N 15 ALF F2 F N N 16 ALF F3 F N N 17 ALF F4 F N N 18 ARG N N N N 19 ARG CA C N S 20 ARG C C N N 21 ARG O O N N 22 ARG CB C N N 23 ARG CG C N N 24 ARG CD C N N 25 ARG NE N N N 26 ARG CZ C N N 27 ARG NH1 N N N 28 ARG NH2 N N N 29 ARG OXT O N N 30 ARG H H N N 31 ARG H2 H N N 32 ARG HA H N N 33 ARG HB2 H N N 34 ARG HB3 H N N 35 ARG HG2 H N N 36 ARG HG3 H N N 37 ARG HD2 H N N 38 ARG HD3 H N N 39 ARG HE H N N 40 ARG HH11 H N N 41 ARG HH12 H N N 42 ARG HH21 H N N 43 ARG HH22 H N N 44 ARG HXT H N N 45 ASN N N N N 46 ASN CA C N S 47 ASN C C N N 48 ASN O O N N 49 ASN CB C N N 50 ASN CG C N N 51 ASN OD1 O N N 52 ASN ND2 N N N 53 ASN OXT O N N 54 ASN H H N N 55 ASN H2 H N N 56 ASN HA H N N 57 ASN HB2 H N N 58 ASN HB3 H N N 59 ASN HD21 H N N 60 ASN HD22 H N N 61 ASN HXT H N N 62 ASP N N N N 63 ASP CA C N S 64 ASP C C N N 65 ASP O O N N 66 ASP CB C N N 67 ASP CG C N N 68 ASP OD1 O N N 69 ASP OD2 O N N 70 ASP OXT O N N 71 ASP H H N N 72 ASP H2 H N N 73 ASP HA H N N 74 ASP HB2 H N N 75 ASP HB3 H N N 76 ASP HD2 H N N 77 ASP HXT H N N 78 CYS N N N N 79 CYS CA C N R 80 CYS C C N N 81 CYS O O N N 82 CYS CB C N N 83 CYS SG S N N 84 CYS OXT O N N 85 CYS H H N N 86 CYS H2 H N N 87 CYS HA H N N 88 CYS HB2 H N N 89 CYS HB3 H N N 90 CYS HG H N N 91 CYS HXT H N N 92 GDP PB P N N 93 GDP O1B O N N 94 GDP O2B O N N 95 GDP O3B O N N 96 GDP O3A O N N 97 GDP PA P N N 98 GDP O1A O N N 99 GDP O2A O N N 100 GDP "O5'" O N N 101 GDP "C5'" C N N 102 GDP "C4'" C N R 103 GDP "O4'" O N N 104 GDP "C3'" C N S 105 GDP "O3'" O N N 106 GDP "C2'" C N R 107 GDP "O2'" O N N 108 GDP "C1'" C N R 109 GDP N9 N Y N 110 GDP C8 C Y N 111 GDP N7 N Y N 112 GDP C5 C Y N 113 GDP C6 C N N 114 GDP O6 O N N 115 GDP N1 N N N 116 GDP C2 C N N 117 GDP N2 N N N 118 GDP N3 N N N 119 GDP C4 C Y N 120 GDP HOB2 H N N 121 GDP HOB3 H N N 122 GDP HOA2 H N N 123 GDP "H5'" H N N 124 GDP "H5''" H N N 125 GDP "H4'" H N N 126 GDP "H3'" H N N 127 GDP "HO3'" H N N 128 GDP "H2'" H N N 129 GDP "HO2'" H N N 130 GDP "H1'" H N N 131 GDP H8 H N N 132 GDP HN1 H N N 133 GDP HN21 H N N 134 GDP HN22 H N N 135 GLN N N N N 136 GLN CA C N S 137 GLN C C N N 138 GLN O O N N 139 GLN CB C N N 140 GLN CG C N N 141 GLN CD C N N 142 GLN OE1 O N N 143 GLN NE2 N N N 144 GLN OXT O N N 145 GLN H H N N 146 GLN H2 H N N 147 GLN HA H N N 148 GLN HB2 H N N 149 GLN HB3 H N N 150 GLN HG2 H N N 151 GLN HG3 H N N 152 GLN HE21 H N N 153 GLN HE22 H N N 154 GLN HXT H N N 155 GLU N N N N 156 GLU CA C N S 157 GLU C C N N 158 GLU O O N N 159 GLU CB C N N 160 GLU CG C N N 161 GLU CD C N N 162 GLU OE1 O N N 163 GLU OE2 O N N 164 GLU OXT O N N 165 GLU H H N N 166 GLU H2 H N N 167 GLU HA H N N 168 GLU HB2 H N N 169 GLU HB3 H N N 170 GLU HG2 H N N 171 GLU HG3 H N N 172 GLU HE2 H N N 173 GLU HXT H N N 174 GLY N N N N 175 GLY CA C N N 176 GLY C C N N 177 GLY O O N N 178 GLY OXT O N N 179 GLY H H N N 180 GLY H2 H N N 181 GLY HA2 H N N 182 GLY HA3 H N N 183 GLY HXT H N N 184 HIS N N N N 185 HIS CA C N S 186 HIS C C N N 187 HIS O O N N 188 HIS CB C N N 189 HIS CG C Y N 190 HIS ND1 N Y N 191 HIS CD2 C Y N 192 HIS CE1 C Y N 193 HIS NE2 N Y N 194 HIS OXT O N N 195 HIS H H N N 196 HIS H2 H N N 197 HIS HA H N N 198 HIS HB2 H N N 199 HIS HB3 H N N 200 HIS HD1 H N N 201 HIS HD2 H N N 202 HIS HE1 H N N 203 HIS HE2 H N N 204 HIS HXT H N N 205 HOH O O N N 206 HOH H1 H N N 207 HOH H2 H N N 208 ILE N N N N 209 ILE CA C N S 210 ILE C C N N 211 ILE O O N N 212 ILE CB C N S 213 ILE CG1 C N N 214 ILE CG2 C N N 215 ILE CD1 C N N 216 ILE OXT O N N 217 ILE H H N N 218 ILE H2 H N N 219 ILE HA H N N 220 ILE HB H N N 221 ILE HG12 H N N 222 ILE HG13 H N N 223 ILE HG21 H N N 224 ILE HG22 H N N 225 ILE HG23 H N N 226 ILE HD11 H N N 227 ILE HD12 H N N 228 ILE HD13 H N N 229 ILE HXT H N N 230 LEU N N N N 231 LEU CA C N S 232 LEU C C N N 233 LEU O O N N 234 LEU CB C N N 235 LEU CG C N N 236 LEU CD1 C N N 237 LEU CD2 C N N 238 LEU OXT O N N 239 LEU H H N N 240 LEU H2 H N N 241 LEU HA H N N 242 LEU HB2 H N N 243 LEU HB3 H N N 244 LEU HG H N N 245 LEU HD11 H N N 246 LEU HD12 H N N 247 LEU HD13 H N N 248 LEU HD21 H N N 249 LEU HD22 H N N 250 LEU HD23 H N N 251 LEU HXT H N N 252 LYS N N N N 253 LYS CA C N S 254 LYS C C N N 255 LYS O O N N 256 LYS CB C N N 257 LYS CG C N N 258 LYS CD C N N 259 LYS CE C N N 260 LYS NZ N N N 261 LYS OXT O N N 262 LYS H H N N 263 LYS H2 H N N 264 LYS HA H N N 265 LYS HB2 H N N 266 LYS HB3 H N N 267 LYS HG2 H N N 268 LYS HG3 H N N 269 LYS HD2 H N N 270 LYS HD3 H N N 271 LYS HE2 H N N 272 LYS HE3 H N N 273 LYS HZ1 H N N 274 LYS HZ2 H N N 275 LYS HZ3 H N N 276 LYS HXT H N N 277 MET N N N N 278 MET CA C N S 279 MET C C N N 280 MET O O N N 281 MET CB C N N 282 MET CG C N N 283 MET SD S N N 284 MET CE C N N 285 MET OXT O N N 286 MET H H N N 287 MET H2 H N N 288 MET HA H N N 289 MET HB2 H N N 290 MET HB3 H N N 291 MET HG2 H N N 292 MET HG3 H N N 293 MET HE1 H N N 294 MET HE2 H N N 295 MET HE3 H N N 296 MET HXT H N N 297 MG MG MG N N 298 PHE N N N N 299 PHE CA C N S 300 PHE C C N N 301 PHE O O N N 302 PHE CB C N N 303 PHE CG C Y N 304 PHE CD1 C Y N 305 PHE CD2 C Y N 306 PHE CE1 C Y N 307 PHE CE2 C Y N 308 PHE CZ C Y N 309 PHE OXT O N N 310 PHE H H N N 311 PHE H2 H N N 312 PHE HA H N N 313 PHE HB2 H N N 314 PHE HB3 H N N 315 PHE HD1 H N N 316 PHE HD2 H N N 317 PHE HE1 H N N 318 PHE HE2 H N N 319 PHE HZ H N N 320 PHE HXT H N N 321 PRO N N N N 322 PRO CA C N S 323 PRO C C N N 324 PRO O O N N 325 PRO CB C N N 326 PRO CG C N N 327 PRO CD C N N 328 PRO OXT O N N 329 PRO H H N N 330 PRO HA H N N 331 PRO HB2 H N N 332 PRO HB3 H N N 333 PRO HG2 H N N 334 PRO HG3 H N N 335 PRO HD2 H N N 336 PRO HD3 H N N 337 PRO HXT H N N 338 SER N N N N 339 SER CA C N S 340 SER C C N N 341 SER O O N N 342 SER CB C N N 343 SER OG O N N 344 SER OXT O N N 345 SER H H N N 346 SER H2 H N N 347 SER HA H N N 348 SER HB2 H N N 349 SER HB3 H N N 350 SER HG H N N 351 SER HXT H N N 352 THR N N N N 353 THR CA C N S 354 THR C C N N 355 THR O O N N 356 THR CB C N R 357 THR OG1 O N N 358 THR CG2 C N N 359 THR OXT O N N 360 THR H H N N 361 THR H2 H N N 362 THR HA H N N 363 THR HB H N N 364 THR HG1 H N N 365 THR HG21 H N N 366 THR HG22 H N N 367 THR HG23 H N N 368 THR HXT H N N 369 TRP N N N N 370 TRP CA C N S 371 TRP C C N N 372 TRP O O N N 373 TRP CB C N N 374 TRP CG C Y N 375 TRP CD1 C Y N 376 TRP CD2 C Y N 377 TRP NE1 N Y N 378 TRP CE2 C Y N 379 TRP CE3 C Y N 380 TRP CZ2 C Y N 381 TRP CZ3 C Y N 382 TRP CH2 C Y N 383 TRP OXT O N N 384 TRP H H N N 385 TRP H2 H N N 386 TRP HA H N N 387 TRP HB2 H N N 388 TRP HB3 H N N 389 TRP HD1 H N N 390 TRP HE1 H N N 391 TRP HE3 H N N 392 TRP HZ2 H N N 393 TRP HZ3 H N N 394 TRP HH2 H N N 395 TRP HXT H N N 396 TYR N N N N 397 TYR CA C N S 398 TYR C C N N 399 TYR O O N N 400 TYR CB C N N 401 TYR CG C Y N 402 TYR CD1 C Y N 403 TYR CD2 C Y N 404 TYR CE1 C Y N 405 TYR CE2 C Y N 406 TYR CZ C Y N 407 TYR OH O N N 408 TYR OXT O N N 409 TYR H H N N 410 TYR H2 H N N 411 TYR HA H N N 412 TYR HB2 H N N 413 TYR HB3 H N N 414 TYR HD1 H N N 415 TYR HD2 H N N 416 TYR HE1 H N N 417 TYR HE2 H N N 418 TYR HH H N N 419 TYR HXT H N N 420 VAL N N N N 421 VAL CA C N S 422 VAL C C N N 423 VAL O O N N 424 VAL CB C N N 425 VAL CG1 C N N 426 VAL CG2 C N N 427 VAL OXT O N N 428 VAL H H N N 429 VAL H2 H N N 430 VAL HA H N N 431 VAL HB H N N 432 VAL HG11 H N N 433 VAL HG12 H N N 434 VAL HG13 H N N 435 VAL HG21 H N N 436 VAL HG22 H N N 437 VAL HG23 H N N 438 VAL HXT H N N 439 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ALF AL F1 sing N N 13 ALF AL F2 sing N N 14 ALF AL F3 sing N N 15 ALF AL F4 sing N N 16 ARG N CA sing N N 17 ARG N H sing N N 18 ARG N H2 sing N N 19 ARG CA C sing N N 20 ARG CA CB sing N N 21 ARG CA HA sing N N 22 ARG C O doub N N 23 ARG C OXT sing N N 24 ARG CB CG sing N N 25 ARG CB HB2 sing N N 26 ARG CB HB3 sing N N 27 ARG CG CD sing N N 28 ARG CG HG2 sing N N 29 ARG CG HG3 sing N N 30 ARG CD NE sing N N 31 ARG CD HD2 sing N N 32 ARG CD HD3 sing N N 33 ARG NE CZ sing N N 34 ARG NE HE sing N N 35 ARG CZ NH1 sing N N 36 ARG CZ NH2 doub N N 37 ARG NH1 HH11 sing N N 38 ARG NH1 HH12 sing N N 39 ARG NH2 HH21 sing N N 40 ARG NH2 HH22 sing N N 41 ARG OXT HXT sing N N 42 ASN N CA sing N N 43 ASN N H sing N N 44 ASN N H2 sing N N 45 ASN CA C sing N N 46 ASN CA CB sing N N 47 ASN CA HA sing N N 48 ASN C O doub N N 49 ASN C OXT sing N N 50 ASN CB CG sing N N 51 ASN CB HB2 sing N N 52 ASN CB HB3 sing N N 53 ASN CG OD1 doub N N 54 ASN CG ND2 sing N N 55 ASN ND2 HD21 sing N N 56 ASN ND2 HD22 sing N N 57 ASN OXT HXT sing N N 58 ASP N CA sing N N 59 ASP N H sing N N 60 ASP N H2 sing N N 61 ASP CA C sing N N 62 ASP CA CB sing N N 63 ASP CA HA sing N N 64 ASP C O doub N N 65 ASP C OXT sing N N 66 ASP CB CG sing N N 67 ASP CB HB2 sing N N 68 ASP CB HB3 sing N N 69 ASP CG OD1 doub N N 70 ASP CG OD2 sing N N 71 ASP OD2 HD2 sing N N 72 ASP OXT HXT sing N N 73 CYS N CA sing N N 74 CYS N H sing N N 75 CYS N H2 sing N N 76 CYS CA C sing N N 77 CYS CA CB sing N N 78 CYS CA HA sing N N 79 CYS C O doub N N 80 CYS C OXT sing N N 81 CYS CB SG sing N N 82 CYS CB HB2 sing N N 83 CYS CB HB3 sing N N 84 CYS SG HG sing N N 85 CYS OXT HXT sing N N 86 GDP PB O1B doub N N 87 GDP PB O2B sing N N 88 GDP PB O3B sing N N 89 GDP PB O3A sing N N 90 GDP O2B HOB2 sing N N 91 GDP O3B HOB3 sing N N 92 GDP O3A PA sing N N 93 GDP PA O1A doub N N 94 GDP PA O2A sing N N 95 GDP PA "O5'" sing N N 96 GDP O2A HOA2 sing N N 97 GDP "O5'" "C5'" sing N N 98 GDP "C5'" "C4'" sing N N 99 GDP "C5'" "H5'" sing N N 100 GDP "C5'" "H5''" sing N N 101 GDP "C4'" "O4'" sing N N 102 GDP "C4'" "C3'" sing N N 103 GDP "C4'" "H4'" sing N N 104 GDP "O4'" "C1'" sing N N 105 GDP "C3'" "O3'" sing N N 106 GDP "C3'" "C2'" sing N N 107 GDP "C3'" "H3'" sing N N 108 GDP "O3'" "HO3'" sing N N 109 GDP "C2'" "O2'" sing N N 110 GDP "C2'" "C1'" sing N N 111 GDP "C2'" "H2'" sing N N 112 GDP "O2'" "HO2'" sing N N 113 GDP "C1'" N9 sing N N 114 GDP "C1'" "H1'" sing N N 115 GDP N9 C8 sing Y N 116 GDP N9 C4 sing Y N 117 GDP C8 N7 doub Y N 118 GDP C8 H8 sing N N 119 GDP N7 C5 sing Y N 120 GDP C5 C6 sing N N 121 GDP C5 C4 doub Y N 122 GDP C6 O6 doub N N 123 GDP C6 N1 sing N N 124 GDP N1 C2 sing N N 125 GDP N1 HN1 sing N N 126 GDP C2 N2 sing N N 127 GDP C2 N3 doub N N 128 GDP N2 HN21 sing N N 129 GDP N2 HN22 sing N N 130 GDP N3 C4 sing N N 131 GLN N CA sing N N 132 GLN N H sing N N 133 GLN N H2 sing N N 134 GLN CA C sing N N 135 GLN CA CB sing N N 136 GLN CA HA sing N N 137 GLN C O doub N N 138 GLN C OXT sing N N 139 GLN CB CG sing N N 140 GLN CB HB2 sing N N 141 GLN CB HB3 sing N N 142 GLN CG CD sing N N 143 GLN CG HG2 sing N N 144 GLN CG HG3 sing N N 145 GLN CD OE1 doub N N 146 GLN CD NE2 sing N N 147 GLN NE2 HE21 sing N N 148 GLN NE2 HE22 sing N N 149 GLN OXT HXT sing N N 150 GLU N CA sing N N 151 GLU N H sing N N 152 GLU N H2 sing N N 153 GLU CA C sing N N 154 GLU CA CB sing N N 155 GLU CA HA sing N N 156 GLU C O doub N N 157 GLU C OXT sing N N 158 GLU CB CG sing N N 159 GLU CB HB2 sing N N 160 GLU CB HB3 sing N N 161 GLU CG CD sing N N 162 GLU CG HG2 sing N N 163 GLU CG HG3 sing N N 164 GLU CD OE1 doub N N 165 GLU CD OE2 sing N N 166 GLU OE2 HE2 sing N N 167 GLU OXT HXT sing N N 168 GLY N CA sing N N 169 GLY N H sing N N 170 GLY N H2 sing N N 171 GLY CA C sing N N 172 GLY CA HA2 sing N N 173 GLY CA HA3 sing N N 174 GLY C O doub N N 175 GLY C OXT sing N N 176 GLY OXT HXT sing N N 177 HIS N CA sing N N 178 HIS N H sing N N 179 HIS N H2 sing N N 180 HIS CA C sing N N 181 HIS CA CB sing N N 182 HIS CA HA sing N N 183 HIS C O doub N N 184 HIS C OXT sing N N 185 HIS CB CG sing N N 186 HIS CB HB2 sing N N 187 HIS CB HB3 sing N N 188 HIS CG ND1 sing Y N 189 HIS CG CD2 doub Y N 190 HIS ND1 CE1 doub Y N 191 HIS ND1 HD1 sing N N 192 HIS CD2 NE2 sing Y N 193 HIS CD2 HD2 sing N N 194 HIS CE1 NE2 sing Y N 195 HIS CE1 HE1 sing N N 196 HIS NE2 HE2 sing N N 197 HIS OXT HXT sing N N 198 HOH O H1 sing N N 199 HOH O H2 sing N N 200 ILE N CA sing N N 201 ILE N H sing N N 202 ILE N H2 sing N N 203 ILE CA C sing N N 204 ILE CA CB sing N N 205 ILE CA HA sing N N 206 ILE C O doub N N 207 ILE C OXT sing N N 208 ILE CB CG1 sing N N 209 ILE CB CG2 sing N N 210 ILE CB HB sing N N 211 ILE CG1 CD1 sing N N 212 ILE CG1 HG12 sing N N 213 ILE CG1 HG13 sing N N 214 ILE CG2 HG21 sing N N 215 ILE CG2 HG22 sing N N 216 ILE CG2 HG23 sing N N 217 ILE CD1 HD11 sing N N 218 ILE CD1 HD12 sing N N 219 ILE CD1 HD13 sing N N 220 ILE OXT HXT sing N N 221 LEU N CA sing N N 222 LEU N H sing N N 223 LEU N H2 sing N N 224 LEU CA C sing N N 225 LEU CA CB sing N N 226 LEU CA HA sing N N 227 LEU C O doub N N 228 LEU C OXT sing N N 229 LEU CB CG sing N N 230 LEU CB HB2 sing N N 231 LEU CB HB3 sing N N 232 LEU CG CD1 sing N N 233 LEU CG CD2 sing N N 234 LEU CG HG sing N N 235 LEU CD1 HD11 sing N N 236 LEU CD1 HD12 sing N N 237 LEU CD1 HD13 sing N N 238 LEU CD2 HD21 sing N N 239 LEU CD2 HD22 sing N N 240 LEU CD2 HD23 sing N N 241 LEU OXT HXT sing N N 242 LYS N CA sing N N 243 LYS N H sing N N 244 LYS N H2 sing N N 245 LYS CA C sing N N 246 LYS CA CB sing N N 247 LYS CA HA sing N N 248 LYS C O doub N N 249 LYS C OXT sing N N 250 LYS CB CG sing N N 251 LYS CB HB2 sing N N 252 LYS CB HB3 sing N N 253 LYS CG CD sing N N 254 LYS CG HG2 sing N N 255 LYS CG HG3 sing N N 256 LYS CD CE sing N N 257 LYS CD HD2 sing N N 258 LYS CD HD3 sing N N 259 LYS CE NZ sing N N 260 LYS CE HE2 sing N N 261 LYS CE HE3 sing N N 262 LYS NZ HZ1 sing N N 263 LYS NZ HZ2 sing N N 264 LYS NZ HZ3 sing N N 265 LYS OXT HXT sing N N 266 MET N CA sing N N 267 MET N H sing N N 268 MET N H2 sing N N 269 MET CA C sing N N 270 MET CA CB sing N N 271 MET CA HA sing N N 272 MET C O doub N N 273 MET C OXT sing N N 274 MET CB CG sing N N 275 MET CB HB2 sing N N 276 MET CB HB3 sing N N 277 MET CG SD sing N N 278 MET CG HG2 sing N N 279 MET CG HG3 sing N N 280 MET SD CE sing N N 281 MET CE HE1 sing N N 282 MET CE HE2 sing N N 283 MET CE HE3 sing N N 284 MET OXT HXT sing N N 285 PHE N CA sing N N 286 PHE N H sing N N 287 PHE N H2 sing N N 288 PHE CA C sing N N 289 PHE CA CB sing N N 290 PHE CA HA sing N N 291 PHE C O doub N N 292 PHE C OXT sing N N 293 PHE CB CG sing N N 294 PHE CB HB2 sing N N 295 PHE CB HB3 sing N N 296 PHE CG CD1 doub Y N 297 PHE CG CD2 sing Y N 298 PHE CD1 CE1 sing Y N 299 PHE CD1 HD1 sing N N 300 PHE CD2 CE2 doub Y N 301 PHE CD2 HD2 sing N N 302 PHE CE1 CZ doub Y N 303 PHE CE1 HE1 sing N N 304 PHE CE2 CZ sing Y N 305 PHE CE2 HE2 sing N N 306 PHE CZ HZ sing N N 307 PHE OXT HXT sing N N 308 PRO N CA sing N N 309 PRO N CD sing N N 310 PRO N H sing N N 311 PRO CA C sing N N 312 PRO CA CB sing N N 313 PRO CA HA sing N N 314 PRO C O doub N N 315 PRO C OXT sing N N 316 PRO CB CG sing N N 317 PRO CB HB2 sing N N 318 PRO CB HB3 sing N N 319 PRO CG CD sing N N 320 PRO CG HG2 sing N N 321 PRO CG HG3 sing N N 322 PRO CD HD2 sing N N 323 PRO CD HD3 sing N N 324 PRO OXT HXT sing N N 325 SER N CA sing N N 326 SER N H sing N N 327 SER N H2 sing N N 328 SER CA C sing N N 329 SER CA CB sing N N 330 SER CA HA sing N N 331 SER C O doub N N 332 SER C OXT sing N N 333 SER CB OG sing N N 334 SER CB HB2 sing N N 335 SER CB HB3 sing N N 336 SER OG HG sing N N 337 SER OXT HXT sing N N 338 THR N CA sing N N 339 THR N H sing N N 340 THR N H2 sing N N 341 THR CA C sing N N 342 THR CA CB sing N N 343 THR CA HA sing N N 344 THR C O doub N N 345 THR C OXT sing N N 346 THR CB OG1 sing N N 347 THR CB CG2 sing N N 348 THR CB HB sing N N 349 THR OG1 HG1 sing N N 350 THR CG2 HG21 sing N N 351 THR CG2 HG22 sing N N 352 THR CG2 HG23 sing N N 353 THR OXT HXT sing N N 354 TRP N CA sing N N 355 TRP N H sing N N 356 TRP N H2 sing N N 357 TRP CA C sing N N 358 TRP CA CB sing N N 359 TRP CA HA sing N N 360 TRP C O doub N N 361 TRP C OXT sing N N 362 TRP CB CG sing N N 363 TRP CB HB2 sing N N 364 TRP CB HB3 sing N N 365 TRP CG CD1 doub Y N 366 TRP CG CD2 sing Y N 367 TRP CD1 NE1 sing Y N 368 TRP CD1 HD1 sing N N 369 TRP CD2 CE2 doub Y N 370 TRP CD2 CE3 sing Y N 371 TRP NE1 CE2 sing Y N 372 TRP NE1 HE1 sing N N 373 TRP CE2 CZ2 sing Y N 374 TRP CE3 CZ3 doub Y N 375 TRP CE3 HE3 sing N N 376 TRP CZ2 CH2 doub Y N 377 TRP CZ2 HZ2 sing N N 378 TRP CZ3 CH2 sing Y N 379 TRP CZ3 HZ3 sing N N 380 TRP CH2 HH2 sing N N 381 TRP OXT HXT sing N N 382 TYR N CA sing N N 383 TYR N H sing N N 384 TYR N H2 sing N N 385 TYR CA C sing N N 386 TYR CA CB sing N N 387 TYR CA HA sing N N 388 TYR C O doub N N 389 TYR C OXT sing N N 390 TYR CB CG sing N N 391 TYR CB HB2 sing N N 392 TYR CB HB3 sing N N 393 TYR CG CD1 doub Y N 394 TYR CG CD2 sing Y N 395 TYR CD1 CE1 sing Y N 396 TYR CD1 HD1 sing N N 397 TYR CD2 CE2 doub Y N 398 TYR CD2 HD2 sing N N 399 TYR CE1 CZ doub Y N 400 TYR CE1 HE1 sing N N 401 TYR CE2 CZ sing Y N 402 TYR CE2 HE2 sing N N 403 TYR CZ OH sing N N 404 TYR OH HH sing N N 405 TYR OXT HXT sing N N 406 VAL N CA sing N N 407 VAL N H sing N N 408 VAL N H2 sing N N 409 VAL CA C sing N N 410 VAL CA CB sing N N 411 VAL CA HA sing N N 412 VAL C O doub N N 413 VAL C OXT sing N N 414 VAL CB CG1 sing N N 415 VAL CB CG2 sing N N 416 VAL CB HB sing N N 417 VAL CG1 HG11 sing N N 418 VAL CG1 HG12 sing N N 419 VAL CG1 HG13 sing N N 420 VAL CG2 HG21 sing N N 421 VAL CG2 HG22 sing N N 422 VAL CG2 HG23 sing N N 423 VAL OXT HXT sing N N 424 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1GFI _pdbx_initial_refinement_model.details 'PDB entry 1GFI' # _atom_sites.entry_id 3D7M _atom_sites.fract_transf_matrix[1][1] 0.012554 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012554 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008727 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AL C F MG N O P S # loop_