HEADER ELECTRON TRANSPORT 21-MAY-08 3D7N TITLE THE CRYSTAL STRUCTURE OF THE FLAVODOXIN, WRBA-LIKE PROTEIN FROM TITLE 2 AGROBACTERIUM TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVODOXIN, WRBA-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: STR. C58; SOURCE 5 GENE: AGR_L_1309, ATU4201; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS FLAVODOXIN, WRBA-LIKE PROTEIN, STRUCTURAL GENOMICS, PSI, MCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,X.XU,J.GU,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 3D7N 1 VERSN REVDAT 2 24-FEB-09 3D7N 1 VERSN REVDAT 1 15-JUL-08 3D7N 0 JRNL AUTH R.ZHANG,X.XU,J.GU,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE FLAVODOXIN, WRBA-LIKE PROTEIN JRNL TITL 2 FROM AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED 2008 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 10224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 678 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1187 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 48.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.56000 REMARK 3 B22 (A**2) : 2.56000 REMARK 3 B33 (A**2) : -3.84000 REMARK 3 B12 (A**2) : 1.28000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.067 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1217 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 785 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1649 ; 1.766 ; 1.916 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1906 ; 1.055 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 154 ; 8.411 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;35.046 ;24.259 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 181 ;18.403 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;12.624 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 175 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1386 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 257 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 289 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 768 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 591 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 595 ; 0.098 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 39 ; 0.227 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.027 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 926 ; 1.410 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 326 ; 0.222 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1207 ; 1.864 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 533 ; 2.397 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 442 ; 3.453 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 40 REMARK 3 RESIDUE RANGE : A 41 A 80 REMARK 3 RESIDUE RANGE : A 81 A 129 REMARK 3 RESIDUE RANGE : A 149 A 156 REMARK 3 RESIDUE RANGE : A 165 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2885 12.5357 77.9606 REMARK 3 T TENSOR REMARK 3 T11: -0.1034 T22: -0.1079 REMARK 3 T33: -0.1892 T12: 0.1429 REMARK 3 T13: 0.0199 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 2.5222 L22: 4.7107 REMARK 3 L33: 4.6193 L12: 0.1778 REMARK 3 L13: -0.1660 L23: 0.7441 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: -0.1721 S13: 0.1378 REMARK 3 S21: 0.1716 S22: -0.1032 S23: 0.4234 REMARK 3 S31: -0.5385 S32: -0.5156 S33: 0.1302 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-08. REMARK 100 THE RCSB ID CODE IS RCSB047694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10224 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 58.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 24.700 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 17.30 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 0.2M NACL, 25%PEG3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.32533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.16267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 96.32533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.16267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.32533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 48.16267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 96.32533 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 48.16267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTS AS TETRAMER. THE REST PART OF THE REMARK 300 BIOLOGICAL ASSEMBLY IS GENERATED BY THE OPERATIONS:X-Y,-Y,-Z+1; -X+ REMARK 300 1,-Y,Z; -X+Y+1,Y,-Z+1 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 73.94800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 144.48800 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 73.94800 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 144.48800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 SER A 5 REMARK 465 ILE A 130 REMARK 465 LYS A 131 REMARK 465 PRO A 132 REMARK 465 SER A 133 REMARK 465 ASN A 134 REMARK 465 LEU A 135 REMARK 465 LYS A 136 REMARK 465 SER A 137 REMARK 465 SER A 138 REMARK 465 VAL A 139 REMARK 465 ARG A 140 REMARK 465 ASN A 141 REMARK 465 ASP A 142 REMARK 465 ALA A 143 REMARK 465 ASN A 144 REMARK 465 ARG A 145 REMARK 465 MSE A 146 REMARK 465 GLY A 147 REMARK 465 SER A 148 REMARK 465 ASP A 157 REMARK 465 ALA A 158 REMARK 465 ASP A 159 REMARK 465 ALA A 160 REMARK 465 ALA A 161 REMARK 465 PRO A 162 REMARK 465 GLU A 163 REMARK 465 SER A 189 REMARK 465 THR A 190 REMARK 465 GLU A 191 REMARK 465 ARG A 192 REMARK 465 VAL A 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 124 CB - CG - CD1 ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 17 -18.70 95.25 REMARK 500 SER A 102 -132.35 -146.01 REMARK 500 ASN A 104 0.84 -54.20 REMARK 500 MSE A 165 151.36 171.75 REMARK 500 HIS A 187 55.85 -147.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7446 RELATED DB: TARGETDB DBREF 3D7N A 1 193 UNP A9CG77 A9CG77_AGRT5 1 193 SEQRES 1 A 193 MSE THR THR ASN SER SER SER ASN THR VAL VAL VAL TYR SEQRES 2 A 193 HIS SER GLY TYR GLY HIS THR HIS ARG MSE ALA GLU ALA SEQRES 3 A 193 VAL ALA GLU GLY ALA GLU ALA THR LEU HIS ALA ILE ASP SEQRES 4 A 193 ALA GLU GLY ASN LEU SER GLU ASP GLY TRP ALA ALA LEU SEQRES 5 A 193 ASP ALA ALA ASP ALA ILE ILE PHE GLY THR PRO THR TYR SEQRES 6 A 193 MSE GLY GLY PRO SER TRP GLN PHE LYS LYS PHE ALA ASP SEQRES 7 A 193 ALA SER SER LYS PRO TRP PHE SER ALA LYS TRP GLN ASP SEQRES 8 A 193 LYS VAL PHE GLY GLY PHE THR ASN SER ALA SER LEU ASN SEQRES 9 A 193 GLY ASP LYS LEU ASN THR LEU GLN TYR LEU VAL LEU LEU SEQRES 10 A 193 ALA GLY GLN HIS GLY GLY LEU TRP VAL SER LEU GLY ILE SEQRES 11 A 193 LYS PRO SER ASN LEU LYS SER SER VAL ARG ASN ASP ALA SEQRES 12 A 193 ASN ARG MSE GLY SER TYR ILE ALA PRO MSE ALA GLN SER SEQRES 13 A 193 ASP ALA ASP ALA ALA PRO GLU GLU MSE SER VAL GLY ASP SEQRES 14 A 193 LEU GLU THR ALA ARG LEU TYR GLY ALA ARG VAL ALA ASN SEQRES 15 A 193 VAL ALA ARG GLN HIS LYS SER THR GLU ARG VAL MODRES 3D7N MSE A 23 MET SELENOMETHIONINE MODRES 3D7N MSE A 66 MET SELENOMETHIONINE MODRES 3D7N MSE A 153 MET SELENOMETHIONINE MODRES 3D7N MSE A 165 MET SELENOMETHIONINE HET MSE A 23 8 HET MSE A 66 8 HET MSE A 153 8 HET MSE A 165 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 HOH *27(H2 O) HELIX 1 1 GLY A 18 GLU A 32 1 15 HELIX 2 2 SER A 45 ALA A 55 1 11 HELIX 3 3 SER A 70 SER A 80 1 11 HELIX 4 4 SER A 80 SER A 86 1 7 HELIX 5 5 LEU A 103 HIS A 121 1 19 HELIX 6 6 SER A 166 HIS A 187 1 22 SHEET 1 A 5 THR A 34 ALA A 37 0 SHEET 2 A 5 THR A 9 TYR A 13 1 N VAL A 11 O THR A 34 SHEET 3 A 5 ALA A 57 TYR A 65 1 O ILE A 59 N VAL A 10 SHEET 4 A 5 VAL A 93 SER A 100 1 O GLY A 95 N PHE A 60 SHEET 5 A 5 LEU A 124 TRP A 125 1 O LEU A 124 N PHE A 94 SHEET 1 B 4 GLY A 68 PRO A 69 0 SHEET 2 B 4 ALA A 57 TYR A 65 -1 N TYR A 65 O GLY A 68 SHEET 3 B 4 VAL A 93 SER A 100 1 O GLY A 95 N PHE A 60 SHEET 4 B 4 MSE A 153 GLN A 155 1 O ALA A 154 N SER A 100 LINK C ARG A 22 N MSE A 23 1555 1555 1.32 LINK C MSE A 23 N ALA A 24 1555 1555 1.33 LINK C TYR A 65 N MSE A 66 1555 1555 1.31 LINK C MSE A 66 N GLY A 67 1555 1555 1.31 LINK C PRO A 152 N MSE A 153 1555 1555 1.31 LINK C MSE A 153 N ALA A 154 1555 1555 1.31 LINK C GLU A 164 N MSE A 165 1555 1555 1.33 LINK C MSE A 165 N SER A 166 1555 1555 1.32 CRYST1 73.948 73.948 144.488 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013523 0.007808 0.000000 0.00000 SCALE2 0.000000 0.015615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006921 0.00000