HEADER METAL BINDING PROTEIN 22-MAY-08 3D82 TITLE CRYSTAL STRUCTURE OF A CUPIN-2 DOMAIN CONTAINING PROTEIN (SFRI_3543) TITLE 2 FROM SHEWANELLA FRIGIDIMARINA NCIMB 400 AT 2.05 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CUPIN 2, CONSERVED BARREL DOMAIN PROTEIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA FRIGIDIMARINA NCIMB 400; SOURCE 3 ORGANISM_TAXID: 318167; SOURCE 4 GENE: YP_752209.1, SFRI_3543; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3D82 1 REMARK SEQADV LINK REVDAT 6 24-JUL-19 3D82 1 REMARK LINK REVDAT 5 25-OCT-17 3D82 1 REMARK REVDAT 4 13-JUL-11 3D82 1 VERSN REVDAT 3 23-MAR-11 3D82 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3D82 1 VERSN REVDAT 1 10-JUN-08 3D82 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF DOMAIN OF UNKNOWN FUNCTION WITH A CUPIN JRNL TITL 2 FOLD (YP_752209.1) FROM SHEWANELLA FRIGIDIMARINA NCIMB 400 JRNL TITL 3 AT 2.05 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 40280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2018 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2552 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 36.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : -1.93000 REMARK 3 B33 (A**2) : 1.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.207 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4397 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2986 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5940 ; 1.632 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7292 ; 1.230 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 520 ; 4.104 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;35.085 ;25.216 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 794 ;11.805 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ; 9.108 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 623 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4877 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 895 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 591 ; 0.168 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2830 ; 0.142 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2003 ; 0.162 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2249 ; 0.072 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 201 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.123 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 50 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.091 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2702 ; 1.132 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1024 ; 0.232 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4189 ; 1.833 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1981 ; 3.506 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1741 ; 4.770 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 64 4 REMARK 3 1 B 5 B 64 4 REMARK 3 1 C 5 C 64 4 REMARK 3 1 D 5 D 64 4 REMARK 3 1 E 5 E 64 4 REMARK 3 2 A 65 A 66 4 REMARK 3 2 B 65 B 66 4 REMARK 3 2 C 65 C 66 4 REMARK 3 2 D 65 D 66 4 REMARK 3 2 E 65 E 66 4 REMARK 3 3 A 67 A 101 6 REMARK 3 3 B 67 B 101 6 REMARK 3 3 C 67 C 101 6 REMARK 3 3 D 67 D 101 6 REMARK 3 3 E 67 E 101 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 809 ; 0.360 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 809 ; 0.290 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 809 ; 0.230 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 D (A): 809 ; 0.210 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 E (A): 809 ; 0.280 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 449 ; 0.420 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 B (A): 449 ; 0.480 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 C (A): 449 ; 0.450 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 D (A): 449 ; 0.280 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 E (A): 449 ; 0.320 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 809 ; 0.650 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 809 ; 0.600 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 809 ; 0.640 ; 2.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 809 ; 0.600 ; 2.000 REMARK 3 MEDIUM THERMAL 1 E (A**2): 809 ; 0.680 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 449 ; 2.500 ;10.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 449 ; 1.730 ;10.000 REMARK 3 LOOSE THERMAL 1 C (A**2): 449 ; 1.540 ;10.000 REMARK 3 LOOSE THERMAL 1 D (A**2): 449 ; 1.550 ;10.000 REMARK 3 LOOSE THERMAL 1 E (A**2): 449 ; 1.600 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): -17.0478 39.0000 -5.3581 REMARK 3 T TENSOR REMARK 3 T11: -0.1844 T22: -0.0247 REMARK 3 T33: 0.2831 T12: -0.0182 REMARK 3 T13: -0.0272 T23: 0.2378 REMARK 3 L TENSOR REMARK 3 L11: 1.0727 L22: 6.9955 REMARK 3 L33: 1.7841 L12: 0.1174 REMARK 3 L13: -0.5516 L23: 1.5178 REMARK 3 S TENSOR REMARK 3 S11: -0.4249 S12: 0.1556 S13: -0.1219 REMARK 3 S21: -0.2918 S22: 0.1837 S23: 1.4460 REMARK 3 S31: 0.0894 S32: 0.2926 S33: 0.2412 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2447 29.7104 -18.9824 REMARK 3 T TENSOR REMARK 3 T11: -0.1225 T22: -0.0333 REMARK 3 T33: -0.0270 T12: -0.0250 REMARK 3 T13: -0.1226 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 2.1481 L22: 4.9927 REMARK 3 L33: 2.4459 L12: -0.3083 REMARK 3 L13: -0.2704 L23: -1.5338 REMARK 3 S TENSOR REMARK 3 S11: -0.0361 S12: -0.1004 S13: -0.2439 REMARK 3 S21: -0.2051 S22: 0.2575 S23: 0.8623 REMARK 3 S31: 0.1581 S32: -0.4320 S33: -0.2214 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 101 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2220 35.2467 -29.4753 REMARK 3 T TENSOR REMARK 3 T11: -0.0683 T22: -0.1704 REMARK 3 T33: -0.2039 T12: 0.0187 REMARK 3 T13: -0.1008 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.3372 L22: 2.5749 REMARK 3 L33: 3.1383 L12: 0.0512 REMARK 3 L13: -0.6340 L23: -0.5374 REMARK 3 S TENSOR REMARK 3 S11: -0.0545 S12: 0.1325 S13: -0.0677 REMARK 3 S21: -0.3186 S22: -0.0387 S23: -0.0668 REMARK 3 S31: 0.1337 S32: 0.0358 S33: 0.0932 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 101 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2091 51.0282 -42.5254 REMARK 3 T TENSOR REMARK 3 T11: -0.1218 T22: -0.1175 REMARK 3 T33: -0.1742 T12: -0.0067 REMARK 3 T13: -0.0882 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 2.2366 L22: 3.6381 REMARK 3 L33: 2.5084 L12: -1.0128 REMARK 3 L13: 1.0687 L23: -0.6133 REMARK 3 S TENSOR REMARK 3 S11: -0.0869 S12: -0.0004 S13: 0.1743 REMARK 3 S21: 0.3712 S22: -0.0846 S23: -0.4568 REMARK 3 S31: 0.0742 S32: 0.1739 S33: 0.1715 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 0 E 101 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3653 65.3943 -52.9275 REMARK 3 T TENSOR REMARK 3 T11: -0.1465 T22: -0.1112 REMARK 3 T33: -0.1671 T12: -0.0272 REMARK 3 T13: -0.0643 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.0286 L22: 3.1252 REMARK 3 L33: 1.8408 L12: -1.2117 REMARK 3 L13: 0.4257 L23: -0.6480 REMARK 3 S TENSOR REMARK 3 S11: -0.0716 S12: 0.1277 S13: 0.3358 REMARK 3 S21: -0.0178 S22: -0.1177 S23: -0.1938 REMARK 3 S31: -0.1197 S32: 0.0613 S33: 0.1894 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. X-RAY FLUORESCENCE EXCITATION AND WAVELENGTH SCANS AND REMARK 3 ANOMALOUS DIFFERENCE FOURIERS SUPPORT THE MODELING OF NI ION. REMARK 3 5. AN UNKNOWN LIGAND (UNL) IS MODELED NEXT TO THE NI ION IN EACH REMARK 3 CHAIN. REMARK 4 REMARK 4 3D82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97929,0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40296 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 27.853 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M K2NO3, 20.0000% PEG-3350, NO REMARK 280 BUFFER PH 6., NANODROP, PH 6.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 118.68500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 118.68500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.46000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.57000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.46000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.57000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 118.68500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.46000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.57000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 118.68500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.46000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.57000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS REMARK 300 THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 95.14000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 554 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 465 GLY C 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 14 CG CD1 CD2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 THR B 3 OG1 CG2 REMARK 470 LYS B 90 CD CE NZ REMARK 470 GLU B 91 OE1 OE2 REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 470 LYS C 4 CG CD CE NZ REMARK 470 LYS C 90 NZ REMARK 470 LYS D 90 CE NZ REMARK 470 LYS E 90 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 -121.41 53.20 REMARK 500 PHE A 41 -159.11 -90.93 REMARK 500 THR B 3 86.85 -68.72 REMARK 500 ASN B 28 -123.45 53.13 REMARK 500 LYS C 4 -140.30 -128.68 REMARK 500 ASN C 28 -120.94 51.35 REMARK 500 PHE C 41 -152.24 -89.44 REMARK 500 ASN D 28 -126.72 52.25 REMARK 500 PHE D 41 -147.80 -92.61 REMARK 500 ASN E 28 -121.75 53.48 REMARK 500 PHE E 41 -155.31 -91.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 500 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 44 NE2 REMARK 620 2 HIS A 46 NE2 96.0 REMARK 620 3 GLU A 51 OE1 174.1 78.4 REMARK 620 4 HIS A 85 NE2 87.9 109.8 92.4 REMARK 620 5 UNL A 501 O9 79.5 133.5 105.6 116.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 500 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 44 NE2 REMARK 620 2 HIS B 46 NE2 90.6 REMARK 620 3 GLU B 51 OE1 172.6 82.1 REMARK 620 4 HIS B 85 NE2 87.9 107.6 92.6 REMARK 620 5 UNL B 501 O8 84.9 91.6 96.9 159.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 500 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 44 NE2 REMARK 620 2 HIS C 46 NE2 97.4 REMARK 620 3 GLU C 51 OE1 176.8 84.2 REMARK 620 4 HIS C 85 NE2 90.0 110.4 86.9 REMARK 620 5 UNL C 501 O9 89.9 89.6 92.8 159.8 REMARK 620 6 UNL C 501 O8 81.5 144.1 98.9 105.4 54.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI D 500 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 44 NE2 REMARK 620 2 HIS D 46 NE2 96.1 REMARK 620 3 GLU D 51 OE1 171.3 88.8 REMARK 620 4 HIS D 85 NE2 86.8 110.9 84.7 REMARK 620 5 UNL D 501 O9 83.8 137.4 97.3 111.6 REMARK 620 6 UNL D 501 O8 83.5 80.7 104.4 165.7 56.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI E 500 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 44 NE2 REMARK 620 2 HIS E 46 NE2 99.8 REMARK 620 3 GLU E 51 OE1 172.4 72.8 REMARK 620 4 HIS E 85 NE2 88.4 113.9 93.3 REMARK 620 5 UNL E 501 O8 83.1 87.8 97.8 157.8 REMARK 620 6 UNL E 501 O9 79.0 140.0 107.5 106.0 52.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI D 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI E 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 387127 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT INCLUDES AMINO ACIDS 1 TO 101 OF THE FULL-LENGTH REMARK 999 PROTEIN OF 121 AMINO ACIDS AND WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3D82 A 1 101 UNP Q07X94 Q07X94_SHEFN 1 101 DBREF 3D82 B 1 101 UNP Q07X94 Q07X94_SHEFN 1 101 DBREF 3D82 C 1 101 UNP Q07X94 Q07X94_SHEFN 1 101 DBREF 3D82 D 1 101 UNP Q07X94 Q07X94_SHEFN 1 101 DBREF 3D82 E 1 101 UNP Q07X94 Q07X94_SHEFN 1 101 SEQADV 3D82 GLY A 0 UNP Q07X94 EXPRESSION TAG SEQADV 3D82 GLY B 0 UNP Q07X94 EXPRESSION TAG SEQADV 3D82 GLY C 0 UNP Q07X94 EXPRESSION TAG SEQADV 3D82 GLY D 0 UNP Q07X94 EXPRESSION TAG SEQADV 3D82 GLY E 0 UNP Q07X94 EXPRESSION TAG SEQRES 1 A 102 GLY MSE GLN THR LYS VAL ILE ASN PHE ASN ASP LYS PHE SEQRES 2 A 102 SER LEU PHE ASN GLN HIS TRP SER PRO ARG VAL ILE ALA SEQRES 3 A 102 GLU MSE ASN ASP TYR GLN PHE LYS LEU VAL LYS VAL GLU SEQRES 4 A 102 GLY GLU PHE VAL TRP HIS GLU HIS ALA ASP THR ASP GLU SEQRES 5 A 102 VAL PHE ILE VAL MSE GLU GLY THR LEU GLN ILE ALA PHE SEQRES 6 A 102 ARG ASP GLN ASN ILE THR LEU GLN ALA GLY GLU MSE TYR SEQRES 7 A 102 VAL ILE PRO LYS GLY VAL GLU HIS LYS PRO MSE ALA LYS SEQRES 8 A 102 GLU GLU CYS LYS ILE MSE ILE ILE GLU PRO ARG SEQRES 1 B 102 GLY MSE GLN THR LYS VAL ILE ASN PHE ASN ASP LYS PHE SEQRES 2 B 102 SER LEU PHE ASN GLN HIS TRP SER PRO ARG VAL ILE ALA SEQRES 3 B 102 GLU MSE ASN ASP TYR GLN PHE LYS LEU VAL LYS VAL GLU SEQRES 4 B 102 GLY GLU PHE VAL TRP HIS GLU HIS ALA ASP THR ASP GLU SEQRES 5 B 102 VAL PHE ILE VAL MSE GLU GLY THR LEU GLN ILE ALA PHE SEQRES 6 B 102 ARG ASP GLN ASN ILE THR LEU GLN ALA GLY GLU MSE TYR SEQRES 7 B 102 VAL ILE PRO LYS GLY VAL GLU HIS LYS PRO MSE ALA LYS SEQRES 8 B 102 GLU GLU CYS LYS ILE MSE ILE ILE GLU PRO ARG SEQRES 1 C 102 GLY MSE GLN THR LYS VAL ILE ASN PHE ASN ASP LYS PHE SEQRES 2 C 102 SER LEU PHE ASN GLN HIS TRP SER PRO ARG VAL ILE ALA SEQRES 3 C 102 GLU MSE ASN ASP TYR GLN PHE LYS LEU VAL LYS VAL GLU SEQRES 4 C 102 GLY GLU PHE VAL TRP HIS GLU HIS ALA ASP THR ASP GLU SEQRES 5 C 102 VAL PHE ILE VAL MSE GLU GLY THR LEU GLN ILE ALA PHE SEQRES 6 C 102 ARG ASP GLN ASN ILE THR LEU GLN ALA GLY GLU MSE TYR SEQRES 7 C 102 VAL ILE PRO LYS GLY VAL GLU HIS LYS PRO MSE ALA LYS SEQRES 8 C 102 GLU GLU CYS LYS ILE MSE ILE ILE GLU PRO ARG SEQRES 1 D 102 GLY MSE GLN THR LYS VAL ILE ASN PHE ASN ASP LYS PHE SEQRES 2 D 102 SER LEU PHE ASN GLN HIS TRP SER PRO ARG VAL ILE ALA SEQRES 3 D 102 GLU MSE ASN ASP TYR GLN PHE LYS LEU VAL LYS VAL GLU SEQRES 4 D 102 GLY GLU PHE VAL TRP HIS GLU HIS ALA ASP THR ASP GLU SEQRES 5 D 102 VAL PHE ILE VAL MSE GLU GLY THR LEU GLN ILE ALA PHE SEQRES 6 D 102 ARG ASP GLN ASN ILE THR LEU GLN ALA GLY GLU MSE TYR SEQRES 7 D 102 VAL ILE PRO LYS GLY VAL GLU HIS LYS PRO MSE ALA LYS SEQRES 8 D 102 GLU GLU CYS LYS ILE MSE ILE ILE GLU PRO ARG SEQRES 1 E 102 GLY MSE GLN THR LYS VAL ILE ASN PHE ASN ASP LYS PHE SEQRES 2 E 102 SER LEU PHE ASN GLN HIS TRP SER PRO ARG VAL ILE ALA SEQRES 3 E 102 GLU MSE ASN ASP TYR GLN PHE LYS LEU VAL LYS VAL GLU SEQRES 4 E 102 GLY GLU PHE VAL TRP HIS GLU HIS ALA ASP THR ASP GLU SEQRES 5 E 102 VAL PHE ILE VAL MSE GLU GLY THR LEU GLN ILE ALA PHE SEQRES 6 E 102 ARG ASP GLN ASN ILE THR LEU GLN ALA GLY GLU MSE TYR SEQRES 7 E 102 VAL ILE PRO LYS GLY VAL GLU HIS LYS PRO MSE ALA LYS SEQRES 8 E 102 GLU GLU CYS LYS ILE MSE ILE ILE GLU PRO ARG MODRES 3D82 MSE A 1 MET SELENOMETHIONINE MODRES 3D82 MSE A 27 MET SELENOMETHIONINE MODRES 3D82 MSE A 56 MET SELENOMETHIONINE MODRES 3D82 MSE A 76 MET SELENOMETHIONINE MODRES 3D82 MSE A 88 MET SELENOMETHIONINE MODRES 3D82 MSE A 96 MET SELENOMETHIONINE MODRES 3D82 MSE B 1 MET SELENOMETHIONINE MODRES 3D82 MSE B 27 MET SELENOMETHIONINE MODRES 3D82 MSE B 56 MET SELENOMETHIONINE MODRES 3D82 MSE B 76 MET SELENOMETHIONINE MODRES 3D82 MSE B 88 MET SELENOMETHIONINE MODRES 3D82 MSE B 96 MET SELENOMETHIONINE MODRES 3D82 MSE C 1 MET SELENOMETHIONINE MODRES 3D82 MSE C 27 MET SELENOMETHIONINE MODRES 3D82 MSE C 56 MET SELENOMETHIONINE MODRES 3D82 MSE C 76 MET SELENOMETHIONINE MODRES 3D82 MSE C 88 MET SELENOMETHIONINE MODRES 3D82 MSE C 96 MET SELENOMETHIONINE MODRES 3D82 MSE D 1 MET SELENOMETHIONINE MODRES 3D82 MSE D 27 MET SELENOMETHIONINE MODRES 3D82 MSE D 56 MET SELENOMETHIONINE MODRES 3D82 MSE D 76 MET SELENOMETHIONINE MODRES 3D82 MSE D 88 MET SELENOMETHIONINE MODRES 3D82 MSE D 96 MET SELENOMETHIONINE MODRES 3D82 MSE E 1 MET SELENOMETHIONINE MODRES 3D82 MSE E 27 MET SELENOMETHIONINE MODRES 3D82 MSE E 56 MET SELENOMETHIONINE MODRES 3D82 MSE E 76 MET SELENOMETHIONINE MODRES 3D82 MSE E 88 MET SELENOMETHIONINE MODRES 3D82 MSE E 96 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 27 8 HET MSE A 56 8 HET MSE A 76 8 HET MSE A 88 8 HET MSE A 96 8 HET MSE B 1 8 HET MSE B 27 8 HET MSE B 56 8 HET MSE B 76 8 HET MSE B 88 8 HET MSE B 96 8 HET MSE C 1 8 HET MSE C 27 8 HET MSE C 56 8 HET MSE C 76 8 HET MSE C 88 8 HET MSE C 96 8 HET MSE D 1 8 HET MSE D 27 8 HET MSE D 56 8 HET MSE D 76 8 HET MSE D 88 8 HET MSE D 96 8 HET MSE E 1 8 HET MSE E 27 8 HET MSE E 56 8 HET MSE E 76 8 HET MSE E 88 8 HET MSE E 96 8 HET NI A 500 1 HET UNL A 501 9 HET NI B 500 1 HET UNL B 501 9 HET NI C 500 1 HET UNL C 501 9 HET NI D 500 1 HET UNL D 501 9 HET GOL D 502 6 HET NI E 500 1 HET UNL E 501 9 HET GOL E 502 6 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM UNL UNKNOWN LIGAND HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 30(C5 H11 N O2 SE) FORMUL 6 NI 5(NI 2+) FORMUL 14 GOL 2(C3 H8 O3) FORMUL 18 HOH *237(H2 O) HELIX 1 1 GLY A 0 VAL A 5 5 6 HELIX 2 2 ASN A 7 LEU A 14 1 8 HELIX 3 3 PHE B 8 LEU B 14 1 7 HELIX 4 4 PHE C 8 LEU C 14 1 7 HELIX 5 5 GLY D 0 VAL D 5 5 6 HELIX 6 6 PHE D 8 LEU D 14 1 7 HELIX 7 7 GLY E 0 VAL E 5 5 6 HELIX 8 8 PHE E 8 LEU E 14 1 7 SHEET 1 A 5 ARG A 22 MSE A 27 0 SHEET 2 A 5 TYR A 30 GLU A 40 -1 O PHE A 32 N ILE A 24 SHEET 3 A 5 LYS A 86 PRO A 100 -1 O ALA A 89 N GLY A 39 SHEET 4 A 5 THR A 59 ALA A 63 -1 N GLN A 61 O MSE A 88 SHEET 5 A 5 ASN A 68 GLN A 72 -1 O LEU A 71 N LEU A 60 SHEET 1 B 5 ARG A 22 MSE A 27 0 SHEET 2 B 5 TYR A 30 GLU A 40 -1 O PHE A 32 N ILE A 24 SHEET 3 B 5 LYS A 86 PRO A 100 -1 O ALA A 89 N GLY A 39 SHEET 4 B 5 GLU A 51 GLU A 57 -1 N MSE A 56 O LYS A 94 SHEET 5 B 5 GLU A 75 ILE A 79 -1 O ILE A 79 N GLU A 51 SHEET 1 C 6 ILE B 6 ASN B 7 0 SHEET 2 C 6 GLU C 75 ILE C 79 -1 O MSE C 76 N ILE B 6 SHEET 3 C 6 GLU C 51 GLU C 57 -1 N GLU C 51 O ILE C 79 SHEET 4 C 6 LYS C 86 PRO C 100 -1 O LYS C 94 N GLU C 57 SHEET 5 C 6 TYR C 30 GLU C 40 -1 N GLY C 39 O ALA C 89 SHEET 6 C 6 ARG C 22 MSE C 27 -1 N ILE C 24 O PHE C 32 SHEET 1 D 6 ILE B 6 ASN B 7 0 SHEET 2 D 6 GLU C 75 ILE C 79 -1 O MSE C 76 N ILE B 6 SHEET 3 D 6 GLU C 51 GLU C 57 -1 N GLU C 51 O ILE C 79 SHEET 4 D 6 LYS C 86 PRO C 100 -1 O LYS C 94 N GLU C 57 SHEET 5 D 6 THR C 59 ALA C 63 -1 N GLN C 61 O MSE C 88 SHEET 6 D 6 ASN C 68 GLN C 72 -1 O LEU C 71 N LEU C 60 SHEET 1 E 5 ARG B 22 MSE B 27 0 SHEET 2 E 5 TYR B 30 GLU B 40 -1 O PHE B 32 N ILE B 24 SHEET 3 E 5 LYS B 86 PRO B 100 -1 O ALA B 89 N GLY B 39 SHEET 4 E 5 THR B 59 ALA B 63 -1 N GLN B 61 O MSE B 88 SHEET 5 E 5 ASN B 68 GLN B 72 -1 O LEU B 71 N LEU B 60 SHEET 1 F 6 ARG B 22 MSE B 27 0 SHEET 2 F 6 TYR B 30 GLU B 40 -1 O PHE B 32 N ILE B 24 SHEET 3 F 6 LYS B 86 PRO B 100 -1 O ALA B 89 N GLY B 39 SHEET 4 F 6 GLU B 51 GLU B 57 -1 N MSE B 56 O LYS B 94 SHEET 5 F 6 GLU B 75 ILE B 79 -1 O ILE B 79 N GLU B 51 SHEET 6 F 6 ILE C 6 ASN C 7 -1 O ILE C 6 N MSE B 76 SHEET 1 G 6 ILE D 6 ASN D 7 0 SHEET 2 G 6 GLU E 75 ILE E 79 -1 O MSE E 76 N ILE D 6 SHEET 3 G 6 GLU E 51 GLU E 57 -1 N GLU E 51 O ILE E 79 SHEET 4 G 6 LYS E 86 PRO E 100 -1 O LYS E 94 N GLU E 57 SHEET 5 G 6 TYR E 30 GLU E 40 -1 N GLY E 39 O ALA E 89 SHEET 6 G 6 ARG E 22 MSE E 27 -1 N ILE E 24 O PHE E 32 SHEET 1 H 6 ILE D 6 ASN D 7 0 SHEET 2 H 6 GLU E 75 ILE E 79 -1 O MSE E 76 N ILE D 6 SHEET 3 H 6 GLU E 51 GLU E 57 -1 N GLU E 51 O ILE E 79 SHEET 4 H 6 LYS E 86 PRO E 100 -1 O LYS E 94 N GLU E 57 SHEET 5 H 6 THR E 59 ALA E 63 -1 N GLN E 61 O MSE E 88 SHEET 6 H 6 ASN E 68 GLN E 72 -1 O LEU E 71 N LEU E 60 SHEET 1 I 5 ARG D 22 MSE D 27 0 SHEET 2 I 5 TYR D 30 GLU D 40 -1 O LEU D 34 N ARG D 22 SHEET 3 I 5 HIS D 85 PRO D 100 -1 O ALA D 89 N GLY D 39 SHEET 4 I 5 THR D 59 PHE D 64 -1 N GLN D 61 O MSE D 88 SHEET 5 I 5 ASN D 68 GLN D 72 -1 O LEU D 71 N LEU D 60 SHEET 1 J 6 ARG D 22 MSE D 27 0 SHEET 2 J 6 TYR D 30 GLU D 40 -1 O LEU D 34 N ARG D 22 SHEET 3 J 6 HIS D 85 PRO D 100 -1 O ALA D 89 N GLY D 39 SHEET 4 J 6 GLU D 51 GLU D 57 -1 N MSE D 56 O LYS D 94 SHEET 5 J 6 GLU D 75 ILE D 79 -1 O ILE D 79 N GLU D 51 SHEET 6 J 6 ILE E 6 ASN E 7 -1 O ILE E 6 N MSE D 76 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N GLN A 2 1555 1555 1.34 LINK C GLU A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N ASN A 28 1555 1555 1.34 LINK C VAL A 55 N MSE A 56 1555 1555 1.34 LINK C MSE A 56 N GLU A 57 1555 1555 1.34 LINK C GLU A 75 N MSE A 76 1555 1555 1.34 LINK C MSE A 76 N TYR A 77 1555 1555 1.33 LINK C PRO A 87 N MSE A 88 1555 1555 1.34 LINK C MSE A 88 N ALA A 89 1555 1555 1.33 LINK C ILE A 95 N MSE A 96 1555 1555 1.33 LINK C MSE A 96 N ILE A 97 1555 1555 1.34 LINK C MSE B 1 N GLN B 2 1555 1555 1.34 LINK C GLU B 26 N MSE B 27 1555 1555 1.34 LINK C MSE B 27 N ASN B 28 1555 1555 1.34 LINK C VAL B 55 N MSE B 56 1555 1555 1.33 LINK C MSE B 56 N GLU B 57 1555 1555 1.34 LINK C GLU B 75 N MSE B 76 1555 1555 1.33 LINK C MSE B 76 N TYR B 77 1555 1555 1.32 LINK C PRO B 87 N MSE B 88 1555 1555 1.34 LINK C MSE B 88 N ALA B 89 1555 1555 1.33 LINK C ILE B 95 N MSE B 96 1555 1555 1.33 LINK C MSE B 96 N ILE B 97 1555 1555 1.33 LINK C MSE C 1 N GLN C 2 1555 1555 1.34 LINK C GLU C 26 N MSE C 27 1555 1555 1.33 LINK C MSE C 27 N ASN C 28 1555 1555 1.32 LINK C VAL C 55 N MSE C 56 1555 1555 1.33 LINK C MSE C 56 N GLU C 57 1555 1555 1.34 LINK C GLU C 75 N MSE C 76 1555 1555 1.33 LINK C MSE C 76 N TYR C 77 1555 1555 1.33 LINK C PRO C 87 N MSE C 88 1555 1555 1.32 LINK C MSE C 88 N ALA C 89 1555 1555 1.33 LINK C ILE C 95 N MSE C 96 1555 1555 1.33 LINK C MSE C 96 N ILE C 97 1555 1555 1.33 LINK C GLY D 0 N MSE D 1 1555 1555 1.34 LINK C MSE D 1 N GLN D 2 1555 1555 1.34 LINK C GLU D 26 N MSE D 27 1555 1555 1.33 LINK C MSE D 27 N ASN D 28 1555 1555 1.33 LINK C VAL D 55 N MSE D 56 1555 1555 1.33 LINK C MSE D 56 N GLU D 57 1555 1555 1.34 LINK C GLU D 75 N MSE D 76 1555 1555 1.33 LINK C MSE D 76 N TYR D 77 1555 1555 1.33 LINK C PRO D 87 N MSE D 88 1555 1555 1.33 LINK C MSE D 88 N ALA D 89 1555 1555 1.34 LINK C ILE D 95 N MSE D 96 1555 1555 1.33 LINK C MSE D 96 N ILE D 97 1555 1555 1.33 LINK C GLY E 0 N MSE E 1 1555 1555 1.34 LINK C MSE E 1 N GLN E 2 1555 1555 1.34 LINK C GLU E 26 N MSE E 27 1555 1555 1.34 LINK C MSE E 27 N ASN E 28 1555 1555 1.32 LINK C VAL E 55 N MSE E 56 1555 1555 1.33 LINK C MSE E 56 N GLU E 57 1555 1555 1.33 LINK C GLU E 75 N MSE E 76 1555 1555 1.33 LINK C MSE E 76 N TYR E 77 1555 1555 1.33 LINK C PRO E 87 N MSE E 88 1555 1555 1.33 LINK C MSE E 88 N ALA E 89 1555 1555 1.33 LINK C ILE E 95 N MSE E 96 1555 1555 1.33 LINK C MSE E 96 N ILE E 97 1555 1555 1.33 LINK NE2 HIS A 44 NI NI A 500 1555 1555 2.35 LINK NE2 HIS A 46 NI NI A 500 1555 1555 2.39 LINK OE1 GLU A 51 NI NI A 500 1555 1555 2.28 LINK NE2 HIS A 85 NI NI A 500 1555 1555 2.51 LINK NI NI A 500 O9 UNL A 501 1555 1555 2.14 LINK NE2 HIS B 44 NI NI B 500 1555 1555 2.50 LINK NE2 HIS B 46 NI NI B 500 1555 1555 2.42 LINK OE1 GLU B 51 NI NI B 500 1555 1555 2.44 LINK NE2 HIS B 85 NI NI B 500 1555 1555 2.50 LINK NI NI B 500 O8 UNL B 501 1555 1555 2.30 LINK NE2 HIS C 44 NI NI C 500 1555 1555 2.26 LINK NE2 HIS C 46 NI NI C 500 1555 1555 2.25 LINK OE1 GLU C 51 NI NI C 500 1555 1555 2.24 LINK NE2 HIS C 85 NI NI C 500 1555 1555 2.39 LINK NI NI C 500 O9 UNL C 501 1555 1555 2.42 LINK NI NI C 500 O8 UNL C 501 1555 1555 2.32 LINK NE2 HIS D 44 NI NI D 500 1555 1555 2.33 LINK NE2 HIS D 46 NI NI D 500 1555 1555 2.37 LINK OE1 GLU D 51 NI NI D 500 1555 1555 2.42 LINK NE2 HIS D 85 NI NI D 500 1555 1555 2.40 LINK NI NI D 500 O9 UNL D 501 1555 1555 2.08 LINK NI NI D 500 O8 UNL D 501 1555 1555 2.44 LINK NE2 HIS E 44 NI NI E 500 1555 1555 2.32 LINK NE2 HIS E 46 NI NI E 500 1555 1555 2.44 LINK OE1 GLU E 51 NI NI E 500 1555 1555 2.35 LINK NE2 HIS E 85 NI NI E 500 1555 1555 2.56 LINK NI NI E 500 O8 UNL E 501 1555 1555 2.45 LINK NI NI E 500 O9 UNL E 501 1555 1555 2.50 SITE 1 AC1 4 HIS A 44 HIS A 46 GLU A 51 HIS A 85 SITE 1 AC2 4 HIS B 44 HIS B 46 GLU B 51 HIS B 85 SITE 1 AC3 4 HIS C 44 HIS C 46 GLU C 51 HIS C 85 SITE 1 AC4 4 HIS D 44 HIS D 46 GLU D 51 HIS D 85 SITE 1 AC5 4 HIS E 44 HIS E 46 GLU E 51 HIS E 85 SITE 1 AC6 5 TRP A 19 HIS A 44 HIS A 46 GLU A 51 SITE 2 AC6 5 PHE A 53 SITE 1 AC7 6 TRP B 19 HIS B 44 HIS B 46 GLU B 51 SITE 2 AC7 6 PHE B 53 PRO B 87 SITE 1 AC8 5 TRP C 19 HIS C 44 HIS C 46 GLU C 51 SITE 2 AC8 5 PHE C 53 SITE 1 AC9 5 TRP D 19 HIS D 44 HIS D 46 GLU D 51 SITE 2 AC9 5 PHE D 53 SITE 1 BC1 7 TRP E 19 HIS E 44 HIS E 46 GLU E 51 SITE 2 BC1 7 PHE E 53 PRO E 87 ILE E 97 SITE 1 BC2 4 ASN D 9 PHE D 12 GLU D 57 GLY E 74 SITE 1 BC3 2 GLY D 74 GLY E 74 CRYST1 56.920 95.140 237.370 90.00 90.00 90.00 C 2 2 21 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017569 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010511 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004213 0.00000