HEADER VIRAL PROTEIN 23-MAY-08 3D8L TITLE CRYSTAL STRUCTURE OF ORF12 FROM THE LACTOCOCCUS LACTIS BACTERIOPHAGE TITLE 2 P2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF12; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS PHAGE P2; SOURCE 3 ORGANISM_TAXID: 254252; SOURCE 4 GENE: ORF12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETG20A KEYWDS LACTOCOCCAL PHAGE P2, ORF12, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.I.SIPONEN,S.SPINELLI,J.LICHIERE,S.MOINEAU,C.CAMBILLAU,V.CAMPANACCI REVDAT 4 20-MAR-24 3D8L 1 SEQADV REVDAT 3 21-SEP-16 3D8L 1 DBREF SOURCE REVDAT 2 13-JUL-11 3D8L 1 VERSN REVDAT 1 14-APR-09 3D8L 0 JRNL AUTH M.SIPONEN,G.SCIARA,M.VILLION,S.SPINELLI,C.CAMBILLAU, JRNL AUTH 2 S.MOINEAU,V.CAMPANACCI JRNL TITL CRYSTAL STRUCTURE OF ORF12 FROM LACTOCOCCUS LACTIS PHAGE P2 JRNL TITL 2 IDENTIFIES A TAPE MEASURE PROTEIN CHAPERONE JRNL REF J.BACTERIOL. V. 191 728 2009 JRNL REFN ISSN 0021-9193 JRNL PMID 19047351 JRNL DOI 10.1128/JB.01363-08 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 515 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 755 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2211 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 71.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.96000 REMARK 3 B22 (A**2) : -3.96000 REMARK 3 B33 (A**2) : 5.94000 REMARK 3 B12 (A**2) : -1.98000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.763 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.348 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.271 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.831 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2244 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1584 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2992 ; 1.591 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3878 ; 0.921 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 6.777 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;42.087 ;26.053 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 461 ;21.424 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;22.325 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 319 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2457 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 450 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 619 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1601 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1158 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1221 ; 0.098 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 38 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.268 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.316 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1698 ; 0.626 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 554 ; 0.086 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2128 ; 0.769 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1084 ; 1.196 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 864 ; 1.810 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 91 4 REMARK 3 1 B 1 B 91 4 REMARK 3 1 C 4 C 91 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1243 ; 0.41 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1243 ; 0.47 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1243 ; 0.46 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1243 ; 0.42 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1243 ; 0.40 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1243 ; 0.36 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 64.2320 31.2250 62.9570 REMARK 3 T TENSOR REMARK 3 T11: -0.1173 T22: -0.2257 REMARK 3 T33: -0.2443 T12: -0.0390 REMARK 3 T13: 0.0126 T23: -0.0591 REMARK 3 L TENSOR REMARK 3 L11: 9.9507 L22: 7.9449 REMARK 3 L33: 3.8763 L12: -1.5189 REMARK 3 L13: 1.7054 L23: -1.3081 REMARK 3 S TENSOR REMARK 3 S11: -0.0528 S12: 0.1741 S13: -0.4135 REMARK 3 S21: -0.2401 S22: -0.0614 S23: 0.3580 REMARK 3 S31: 0.5907 S32: -0.2322 S33: 0.1142 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): 52.3850 33.6900 92.1430 REMARK 3 T TENSOR REMARK 3 T11: -0.1784 T22: -0.0331 REMARK 3 T33: -0.2188 T12: -0.1237 REMARK 3 T13: 0.0571 T23: -0.1012 REMARK 3 L TENSOR REMARK 3 L11: 10.1643 L22: 6.6579 REMARK 3 L33: 6.3658 L12: 1.0452 REMARK 3 L13: 3.5661 L23: 2.5072 REMARK 3 S TENSOR REMARK 3 S11: 0.0696 S12: -0.2943 S13: -0.4578 REMARK 3 S21: -0.0787 S22: -0.3334 S23: 0.1814 REMARK 3 S31: 0.3634 S32: -0.6472 S33: 0.2638 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 91 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3270 25.4980 80.8320 REMARK 3 T TENSOR REMARK 3 T11: -0.1327 T22: 0.0589 REMARK 3 T33: -0.2422 T12: -0.1497 REMARK 3 T13: -0.0035 T23: -0.0611 REMARK 3 L TENSOR REMARK 3 L11: 8.6855 L22: 12.4684 REMARK 3 L33: 9.0440 L12: 2.5028 REMARK 3 L13: 1.7203 L23: 4.7377 REMARK 3 S TENSOR REMARK 3 S11: 0.3104 S12: -0.1977 S13: -0.2207 REMARK 3 S21: 0.0282 S22: -0.0738 S23: -0.2311 REMARK 3 S31: -0.3100 S32: 0.6368 S33: -0.2366 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D8L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : TYROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10739 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.40 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.00 REMARK 200 R MERGE FOR SHELL (I) : 0.09200 REMARK 200 R SYM FOR SHELL (I) : 0.44100 REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 15.9% PEG600, PH6.8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 79.15900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.70247 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 33.17467 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 79.15900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 45.70247 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 33.17467 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 79.15900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 45.70247 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 33.17467 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 79.15900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 45.70247 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.17467 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 79.15900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 45.70247 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 33.17467 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 79.15900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 45.70247 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.17467 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 91.40494 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 66.34933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 91.40494 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 66.34933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 91.40494 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 66.34933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 91.40494 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.34933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 91.40494 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 66.34933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 91.40494 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 66.34933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 1 REMARK 465 ALA C 2 REMARK 465 LYS C 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 42 OG SER B 6 16546 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 32 N - CA - C ANGL. DEV. = 23.9 DEGREES REMARK 500 GLU A 33 N - CA - CB ANGL. DEV. = 26.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 66.91 -69.89 REMARK 500 LYS A 32 -157.32 71.92 REMARK 500 GLU A 33 -89.09 170.95 REMARK 500 ASP A 34 43.96 -105.24 REMARK 500 GLU A 36 43.18 -99.30 REMARK 500 PHE A 71 10.69 59.94 REMARK 500 LYS A 89 6.42 -69.69 REMARK 500 ALA B 2 77.93 -49.86 REMARK 500 GLU B 33 -76.32 -130.94 REMARK 500 ASP B 34 60.37 -113.12 REMARK 500 GLU B 36 46.88 -142.28 REMARK 500 LYS C 32 170.84 53.33 REMARK 500 GLU C 33 -67.53 -125.75 REMARK 500 ASP C 34 63.12 -108.51 REMARK 500 GLU C 36 37.90 -95.06 REMARK 500 PHE C 71 4.50 57.90 REMARK 500 LEU C 80 -62.83 -29.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 32 -13.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 3D8L A 1 91 UNP D3WAD0 D3WAD0_9CAUD 1 91 DBREF 3D8L B 1 91 UNP D3WAD0 D3WAD0_9CAUD 1 91 DBREF 3D8L C 1 91 UNP D3WAD0 D3WAD0_9CAUD 1 91 SEQADV 3D8L GLY A 1 UNP D3WAD0 MET 1 ENGINEERED MUTATION SEQADV 3D8L GLY B 1 UNP D3WAD0 MET 1 ENGINEERED MUTATION SEQADV 3D8L GLY C 1 UNP D3WAD0 MET 1 ENGINEERED MUTATION SEQRES 1 A 91 GLY ALA LYS GLN LEU SER THR ALA ARG LYS PHE LYS MET SEQRES 2 A 91 ILE THR GLY LYS ASP LEU PHE GLN GLN GLN LYS ALA MET SEQRES 3 A 91 ASP THR GLU LEU LYS LYS GLU ASP GLY GLU ILE THR ASP SEQRES 4 A 91 LEU MET GLU PHE VAL GLN TYR GLY LEU TYR LEU ALA LEU SEQRES 5 A 91 PHE GLN ASP ASN ILE VAL LYS ALA LYS SER ASP PHE SER SEQRES 6 A 91 ASP PHE ARG SER SER PHE GLU PHE ASP THR ASP GLY LYS SEQRES 7 A 91 GLY LEU LYS GLU LEU VAL GLU LEU TRP GLN LYS GLU ILE SEQRES 1 B 91 GLY ALA LYS GLN LEU SER THR ALA ARG LYS PHE LYS MET SEQRES 2 B 91 ILE THR GLY LYS ASP LEU PHE GLN GLN GLN LYS ALA MET SEQRES 3 B 91 ASP THR GLU LEU LYS LYS GLU ASP GLY GLU ILE THR ASP SEQRES 4 B 91 LEU MET GLU PHE VAL GLN TYR GLY LEU TYR LEU ALA LEU SEQRES 5 B 91 PHE GLN ASP ASN ILE VAL LYS ALA LYS SER ASP PHE SER SEQRES 6 B 91 ASP PHE ARG SER SER PHE GLU PHE ASP THR ASP GLY LYS SEQRES 7 B 91 GLY LEU LYS GLU LEU VAL GLU LEU TRP GLN LYS GLU ILE SEQRES 1 C 91 GLY ALA LYS GLN LEU SER THR ALA ARG LYS PHE LYS MET SEQRES 2 C 91 ILE THR GLY LYS ASP LEU PHE GLN GLN GLN LYS ALA MET SEQRES 3 C 91 ASP THR GLU LEU LYS LYS GLU ASP GLY GLU ILE THR ASP SEQRES 4 C 91 LEU MET GLU PHE VAL GLN TYR GLY LEU TYR LEU ALA LEU SEQRES 5 C 91 PHE GLN ASP ASN ILE VAL LYS ALA LYS SER ASP PHE SER SEQRES 6 C 91 ASP PHE ARG SER SER PHE GLU PHE ASP THR ASP GLY LYS SEQRES 7 C 91 GLY LEU LYS GLU LEU VAL GLU LEU TRP GLN LYS GLU ILE FORMUL 4 HOH *4(H2 O) HELIX 1 1 SER A 6 GLY A 16 1 11 HELIX 2 2 ASP A 18 LYS A 32 1 15 HELIX 3 3 GLU A 36 GLN A 54 1 19 HELIX 4 4 ASN A 56 PHE A 71 1 16 HELIX 5 5 GLY A 79 LYS A 89 1 11 HELIX 6 6 SER B 6 GLY B 16 1 11 HELIX 7 7 ASP B 18 LYS B 31 1 14 HELIX 8 8 GLU B 36 GLN B 54 1 19 HELIX 9 9 ASN B 56 PHE B 71 1 16 HELIX 10 10 GLY B 79 GLN B 88 1 10 HELIX 11 11 LYS B 89 ILE B 91 5 3 HELIX 12 12 SER C 6 GLY C 16 1 11 HELIX 13 13 ASP C 18 LYS C 32 1 15 HELIX 14 14 GLU C 36 GLN C 54 1 19 HELIX 15 15 ASN C 56 PHE C 71 1 16 HELIX 16 16 GLY C 79 GLU C 90 1 12 CRYST1 158.318 158.318 99.524 90.00 90.00 120.00 H 3 2 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006316 0.003647 0.000000 0.00000 SCALE2 0.000000 0.007294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010048 0.00000