HEADER OXIDOREDUCTASE 26-MAY-08 3D8X TITLE CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE NDPPH DEPENDENT TITLE 2 THIOREDOXIN REDUCTASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_TAXID: 4932; SOURCE 4 STRAIN: S288C; SOURCE 5 GENE: TRR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS THIOREDOXIN REDUCTASE, NADPH, YEAST, MODPIPE MODEL OF A6Z, FAD, KEYWDS 2 FLAVOPROTEIN, OXIDOREDUCTASE, REDOX-ACTIVE CENTER EXPDTA X-RAY DIFFRACTION AUTHOR Z.Y.ZHANG,R.BAO,J.YU,Y.X.CHEN,C.-Z.ZHOU REVDAT 6 16-OCT-24 3D8X 1 REMARK REVDAT 5 01-NOV-23 3D8X 1 REMARK SEQADV REVDAT 4 20-NOV-13 3D8X 1 HET HETATM HETNAM REVDAT 3 13-JUL-11 3D8X 1 VERSN REVDAT 2 13-JAN-09 3D8X 1 JRNL REVDAT 1 09-DEC-08 3D8X 0 JRNL AUTH Z.ZHANG,R.BAO,Y.ZHANG,J.YU,C.-Z.ZHOU,Y.CHEN JRNL TITL CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE CYTOPLASMIC JRNL TITL 2 THIOREDOXIN REDUCTASE TRR1 REVEALS THE STRUCTURAL BASIS FOR JRNL TITL 3 SPECIES-SPECIFIC RECOGNITION OF THIOREDOXIN JRNL REF BIOCHIM.BIOPHYS.ACTA V.1794 124 2009 JRNL REFN ISSN 0006-3002 JRNL PMID 18930846 JRNL DOI 10.1016/J.BBAPAP.2008.09.011 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 16736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 912 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1225 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 56.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.91000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : 1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.370 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.260 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.462 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5004 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6793 ; 1.223 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 634 ;13.505 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;36.772 ;25.080 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;20.052 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.419 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 774 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3652 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2266 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3427 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 162 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.125 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3209 ; 0.470 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5048 ; 0.732 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2098 ; 0.885 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1745 ; 1.448 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 121 REMARK 3 RESIDUE RANGE : A 251 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2890 -9.2850 30.0710 REMARK 3 T TENSOR REMARK 3 T11: -0.1683 T22: -0.0006 REMARK 3 T33: -0.1854 T12: 0.0434 REMARK 3 T13: -0.0464 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 1.3929 L22: 1.5487 REMARK 3 L33: 2.2233 L12: -0.4551 REMARK 3 L13: -0.1030 L23: 0.1914 REMARK 3 S TENSOR REMARK 3 S11: -0.1471 S12: -0.2375 S13: -0.1084 REMARK 3 S21: 0.1264 S22: 0.1194 S23: 0.0939 REMARK 3 S31: -0.0432 S32: -0.0264 S33: 0.0277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D8X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19676 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1VDC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5, EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 62.50200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 GLY A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 MET B -6 REMARK 465 GLY B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 227 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 125 OE2 GLU A 131 2.06 REMARK 500 O SER B 75 CG2 THR B 80 2.16 REMARK 500 OG SER A 11 N GLY A 43 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 50 -80.99 -97.84 REMARK 500 PHE A 103 -3.33 74.41 REMARK 500 PRO A 109 150.17 -48.40 REMARK 500 ALA A 121 84.46 -152.89 REMARK 500 THR B 50 -94.58 -89.45 REMARK 500 ALA B 121 85.27 -153.49 REMARK 500 CYS B 142 102.46 -160.03 REMARK 500 LYS B 221 -32.32 -134.78 REMARK 500 ASN B 234 49.25 33.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NDP A 481 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 481 DBREF 3D8X A 2 319 UNP P29509 TRXB1_YEAST 2 319 DBREF 3D8X B 2 319 UNP P29509 TRXB1_YEAST 2 319 SEQADV 3D8X MET A -6 UNP P29509 EXPRESSION TAG SEQADV 3D8X GLY A -5 UNP P29509 EXPRESSION TAG SEQADV 3D8X HIS A -4 UNP P29509 EXPRESSION TAG SEQADV 3D8X HIS A -3 UNP P29509 EXPRESSION TAG SEQADV 3D8X HIS A -2 UNP P29509 EXPRESSION TAG SEQADV 3D8X HIS A -1 UNP P29509 EXPRESSION TAG SEQADV 3D8X HIS A 0 UNP P29509 EXPRESSION TAG SEQADV 3D8X HIS A 1 UNP P29509 EXPRESSION TAG SEQADV 3D8X MET B -6 UNP P29509 EXPRESSION TAG SEQADV 3D8X GLY B -5 UNP P29509 EXPRESSION TAG SEQADV 3D8X HIS B -4 UNP P29509 EXPRESSION TAG SEQADV 3D8X HIS B -3 UNP P29509 EXPRESSION TAG SEQADV 3D8X HIS B -2 UNP P29509 EXPRESSION TAG SEQADV 3D8X HIS B -1 UNP P29509 EXPRESSION TAG SEQADV 3D8X HIS B 0 UNP P29509 EXPRESSION TAG SEQADV 3D8X HIS B 1 UNP P29509 EXPRESSION TAG SEQRES 1 A 326 MET GLY HIS HIS HIS HIS HIS HIS VAL HIS ASN LYS VAL SEQRES 2 A 326 THR ILE ILE GLY SER GLY PRO ALA ALA HIS THR ALA ALA SEQRES 3 A 326 ILE TYR LEU ALA ARG ALA GLU ILE LYS PRO ILE LEU TYR SEQRES 4 A 326 GLU GLY MET MET ALA ASN GLY ILE ALA ALA GLY GLY GLN SEQRES 5 A 326 LEU THR THR THR THR GLU ILE GLU ASN PHE PRO GLY PHE SEQRES 6 A 326 PRO ASP GLY LEU THR GLY SER GLU LEU MET ASP ARG MET SEQRES 7 A 326 ARG GLU GLN SER THR LYS PHE GLY THR GLU ILE ILE THR SEQRES 8 A 326 GLU THR VAL SER LYS VAL ASP LEU SER SER LYS PRO PHE SEQRES 9 A 326 LYS LEU TRP THR GLU PHE ASN GLU ASP ALA GLU PRO VAL SEQRES 10 A 326 THR THR ASP ALA ILE ILE LEU ALA THR GLY ALA SER ALA SEQRES 11 A 326 LYS ARG MET HIS LEU PRO GLY GLU GLU THR TYR TRP GLN SEQRES 12 A 326 LYS GLY ILE SER ALA CYS ALA VAL CYS ASP GLY ALA VAL SEQRES 13 A 326 PRO ILE PHE ARG ASN LYS PRO LEU ALA VAL ILE GLY GLY SEQRES 14 A 326 GLY ASP SER ALA CYS GLU GLU ALA GLN PHE LEU THR LYS SEQRES 15 A 326 TYR GLY SER LYS VAL PHE MET LEU VAL ARG LYS ASP HIS SEQRES 16 A 326 LEU ARG ALA SER THR ILE MET GLN LYS ARG ALA GLU LYS SEQRES 17 A 326 ASN GLU LYS ILE GLU ILE LEU TYR ASN THR VAL ALA LEU SEQRES 18 A 326 GLU ALA LYS GLY ASP GLY LYS LEU LEU ASN ALA LEU ARG SEQRES 19 A 326 ILE LYS ASN THR LYS LYS ASN GLU GLU THR ASP LEU PRO SEQRES 20 A 326 VAL SER GLY LEU PHE TYR ALA ILE GLY HIS THR PRO ALA SEQRES 21 A 326 THR LYS ILE VAL ALA GLY GLN VAL ASP THR ASP GLU ALA SEQRES 22 A 326 GLY TYR ILE LYS THR VAL PRO GLY SER SER LEU THR SER SEQRES 23 A 326 VAL PRO GLY PHE PHE ALA ALA GLY ASP VAL GLN ASP SER SEQRES 24 A 326 LYS TYR ARG GLN ALA ILE THR SER ALA GLY SER GLY CYS SEQRES 25 A 326 MET ALA ALA LEU ASP ALA GLU LYS TYR LEU THR SER LEU SEQRES 26 A 326 GLU SEQRES 1 B 326 MET GLY HIS HIS HIS HIS HIS HIS VAL HIS ASN LYS VAL SEQRES 2 B 326 THR ILE ILE GLY SER GLY PRO ALA ALA HIS THR ALA ALA SEQRES 3 B 326 ILE TYR LEU ALA ARG ALA GLU ILE LYS PRO ILE LEU TYR SEQRES 4 B 326 GLU GLY MET MET ALA ASN GLY ILE ALA ALA GLY GLY GLN SEQRES 5 B 326 LEU THR THR THR THR GLU ILE GLU ASN PHE PRO GLY PHE SEQRES 6 B 326 PRO ASP GLY LEU THR GLY SER GLU LEU MET ASP ARG MET SEQRES 7 B 326 ARG GLU GLN SER THR LYS PHE GLY THR GLU ILE ILE THR SEQRES 8 B 326 GLU THR VAL SER LYS VAL ASP LEU SER SER LYS PRO PHE SEQRES 9 B 326 LYS LEU TRP THR GLU PHE ASN GLU ASP ALA GLU PRO VAL SEQRES 10 B 326 THR THR ASP ALA ILE ILE LEU ALA THR GLY ALA SER ALA SEQRES 11 B 326 LYS ARG MET HIS LEU PRO GLY GLU GLU THR TYR TRP GLN SEQRES 12 B 326 LYS GLY ILE SER ALA CYS ALA VAL CYS ASP GLY ALA VAL SEQRES 13 B 326 PRO ILE PHE ARG ASN LYS PRO LEU ALA VAL ILE GLY GLY SEQRES 14 B 326 GLY ASP SER ALA CYS GLU GLU ALA GLN PHE LEU THR LYS SEQRES 15 B 326 TYR GLY SER LYS VAL PHE MET LEU VAL ARG LYS ASP HIS SEQRES 16 B 326 LEU ARG ALA SER THR ILE MET GLN LYS ARG ALA GLU LYS SEQRES 17 B 326 ASN GLU LYS ILE GLU ILE LEU TYR ASN THR VAL ALA LEU SEQRES 18 B 326 GLU ALA LYS GLY ASP GLY LYS LEU LEU ASN ALA LEU ARG SEQRES 19 B 326 ILE LYS ASN THR LYS LYS ASN GLU GLU THR ASP LEU PRO SEQRES 20 B 326 VAL SER GLY LEU PHE TYR ALA ILE GLY HIS THR PRO ALA SEQRES 21 B 326 THR LYS ILE VAL ALA GLY GLN VAL ASP THR ASP GLU ALA SEQRES 22 B 326 GLY TYR ILE LYS THR VAL PRO GLY SER SER LEU THR SER SEQRES 23 B 326 VAL PRO GLY PHE PHE ALA ALA GLY ASP VAL GLN ASP SER SEQRES 24 B 326 LYS TYR ARG GLN ALA ILE THR SER ALA GLY SER GLY CYS SEQRES 25 B 326 MET ALA ALA LEU ASP ALA GLU LYS TYR LEU THR SER LEU SEQRES 26 B 326 GLU HET FAD A1001 53 HET NDP A 481 24 HET FAD B1001 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 NDP C21 H30 N7 O17 P3 FORMUL 6 HOH *100(H2 O) HELIX 1 1 GLY A 12 ALA A 25 1 14 HELIX 2 2 MET A 36 ILE A 40 5 5 HELIX 3 3 GLY A 44 THR A 49 5 6 HELIX 4 4 THR A 63 PHE A 78 1 16 HELIX 5 5 GLY A 130 TRP A 135 1 6 HELIX 6 6 CYS A 142 GLY A 147 1 6 HELIX 7 7 VAL A 149 ARG A 153 5 5 HELIX 8 8 GLY A 163 THR A 174 1 12 HELIX 9 9 SER A 192 ASN A 202 1 11 HELIX 10 10 THR A 254 ALA A 258 5 5 HELIX 11 11 GLY A 287 ASP A 291 5 5 HELIX 12 12 GLN A 296 GLU A 319 1 24 HELIX 13 13 GLY B 12 ALA B 25 1 14 HELIX 14 14 MET B 36 ILE B 40 5 5 HELIX 15 15 GLY B 44 THR B 49 5 6 HELIX 16 16 GLY B 64 PHE B 78 1 15 HELIX 17 17 GLY B 130 TRP B 135 1 6 HELIX 18 18 CYS B 142 GLY B 147 1 6 HELIX 19 19 VAL B 149 ARG B 153 5 5 HELIX 20 20 GLY B 163 THR B 174 1 12 HELIX 21 21 SER B 192 ASN B 202 1 11 HELIX 22 22 THR B 254 ALA B 258 5 5 HELIX 23 23 GLY B 287 ASP B 291 5 5 HELIX 24 24 GLN B 296 GLU B 319 1 24 SHEET 1 A 6 GLU A 81 ILE A 83 0 SHEET 2 A 6 ILE A 30 TYR A 32 1 N LEU A 31 O GLU A 81 SHEET 3 A 6 HIS A 3 ILE A 9 1 N ILE A 8 O ILE A 30 SHEET 4 A 6 VAL A 110 LEU A 117 1 O ILE A 116 N ILE A 9 SHEET 5 A 6 PHE A 97 THR A 101 -1 N LEU A 99 O VAL A 110 SHEET 6 A 6 VAL A 87 ASP A 91 -1 N ASP A 91 O LYS A 98 SHEET 1 B 5 GLU A 81 ILE A 83 0 SHEET 2 B 5 ILE A 30 TYR A 32 1 N LEU A 31 O GLU A 81 SHEET 3 B 5 HIS A 3 ILE A 9 1 N ILE A 8 O ILE A 30 SHEET 4 B 5 VAL A 110 LEU A 117 1 O ILE A 116 N ILE A 9 SHEET 5 B 5 PHE A 283 ALA A 285 1 O PHE A 284 N LEU A 117 SHEET 1 C 2 ALA A 121 ALA A 123 0 SHEET 2 C 2 HIS A 250 PRO A 252 -1 O THR A 251 N SER A 122 SHEET 1 D 5 ILE A 139 SER A 140 0 SHEET 2 D 5 GLY A 243 TYR A 246 1 O TYR A 246 N SER A 140 SHEET 3 D 5 PRO A 156 ILE A 160 1 N ALA A 158 O PHE A 245 SHEET 4 D 5 LYS A 179 LEU A 183 1 O PHE A 181 N LEU A 157 SHEET 5 D 5 ILE A 205 LEU A 208 1 O LEU A 208 N MET A 182 SHEET 1 E 3 THR A 211 GLY A 218 0 SHEET 2 E 3 LEU A 223 ASN A 230 -1 O ARG A 227 N LEU A 214 SHEET 3 E 3 GLU A 235 LEU A 239 -1 O LEU A 239 N LEU A 226 SHEET 1 F 6 GLU B 81 ILE B 83 0 SHEET 2 F 6 ILE B 30 TYR B 32 1 N LEU B 31 O GLU B 81 SHEET 3 F 6 HIS B 3 ILE B 9 1 N ILE B 8 O ILE B 30 SHEET 4 F 6 VAL B 110 LEU B 117 1 O ILE B 116 N ILE B 9 SHEET 5 F 6 PHE B 97 THR B 101 -1 N LEU B 99 O VAL B 110 SHEET 6 F 6 VAL B 87 ASP B 91 -1 N ASP B 91 O LYS B 98 SHEET 1 G 5 GLU B 81 ILE B 83 0 SHEET 2 G 5 ILE B 30 TYR B 32 1 N LEU B 31 O GLU B 81 SHEET 3 G 5 HIS B 3 ILE B 9 1 N ILE B 8 O ILE B 30 SHEET 4 G 5 VAL B 110 LEU B 117 1 O ILE B 116 N ILE B 9 SHEET 5 G 5 PHE B 283 ALA B 285 1 O PHE B 284 N LEU B 117 SHEET 1 H 2 GLU B 51 ILE B 52 0 SHEET 2 H 2 LEU B 62 THR B 63 -1 O LEU B 62 N ILE B 52 SHEET 1 I 2 ALA B 121 ALA B 123 0 SHEET 2 I 2 HIS B 250 PRO B 252 -1 O THR B 251 N SER B 122 SHEET 1 J 5 ILE B 139 SER B 140 0 SHEET 2 J 5 GLY B 243 TYR B 246 1 O TYR B 246 N SER B 140 SHEET 3 J 5 PRO B 156 ILE B 160 1 N ALA B 158 O PHE B 245 SHEET 4 J 5 LYS B 179 LEU B 183 1 O PHE B 181 N LEU B 157 SHEET 5 J 5 ILE B 205 LEU B 208 1 O LEU B 208 N MET B 182 SHEET 1 K 3 THR B 211 GLY B 218 0 SHEET 2 K 3 LEU B 223 ASN B 230 -1 O ALA B 225 N LYS B 217 SHEET 3 K 3 GLU B 235 PRO B 240 -1 O LEU B 239 N LEU B 226 SSBOND 1 CYS A 142 CYS A 145 1555 1555 2.03 SSBOND 2 CYS B 142 CYS B 145 1555 1555 2.03 CISPEP 1 LYS A 95 PRO A 96 0 -2.77 CISPEP 2 LYS B 95 PRO B 96 0 -4.09 SITE 1 AC1 29 ILE A 9 GLY A 10 SER A 11 GLY A 12 SITE 2 AC1 29 PRO A 13 ALA A 14 TYR A 32 GLU A 33 SITE 3 AC1 29 GLY A 34 ALA A 37 ILE A 40 ALA A 41 SITE 4 AC1 29 GLY A 44 GLN A 45 LEU A 46 ILE A 52 SITE 5 AC1 29 ASN A 54 THR A 86 THR A 119 GLY A 120 SITE 6 AC1 29 TRP A 135 CYS A 145 GLY A 287 ASP A 288 SITE 7 AC1 29 ARG A 295 GLN A 296 ALA A 297 SER A 300 SITE 8 AC1 29 TYR B 21 SITE 1 AC2 29 TYR A 21 ILE B 9 GLY B 10 SER B 11 SITE 2 AC2 29 GLY B 12 PRO B 13 ALA B 14 TYR B 32 SITE 3 AC2 29 GLU B 33 GLY B 34 ALA B 37 ILE B 40 SITE 4 AC2 29 ALA B 41 GLY B 44 GLN B 45 LEU B 46 SITE 5 AC2 29 THR B 49 ILE B 52 ASN B 54 THR B 119 SITE 6 AC2 29 GLY B 120 TRP B 135 CYS B 145 GLY B 287 SITE 7 AC2 29 ASP B 288 ARG B 295 GLN B 296 ALA B 297 SITE 8 AC2 29 SER B 300 SITE 1 AC3 9 MET A 126 GLY A 161 GLY A 163 SER A 165 SITE 2 AC3 9 ARG A 185 LYS A 186 ARG A 190 ILE A 248 SITE 3 AC3 9 ASP B 106 CRYST1 54.229 125.004 60.967 90.00 114.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018440 0.000000 0.008270 0.00000 SCALE2 0.000000 0.008000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017976 0.00000