HEADER TRANSCRIPTION 27-MAY-08 3D9N TITLE SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT TITLE 2 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA-POLYMERASE TITLE 3 II COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 16; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CTD INTERACTING DOMAIN OF SCAF8, UNP RESIDUES 1-136; COMPND 5 SYNONYM: RNA-BINDING MOTIF PROTEIN 16; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CTD-PEPTIDE; COMPND 9 CHAIN: Y, Z; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: MAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM16, KIAA1116; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: PEPTIDE DERIVED FROM THE CONSERVED REPEAT SEQUENCE IN SOURCE 13 RNA POLYMERASE II CTD KEYWDS SCAF8, RNA POLYMERASE II CTD INTERACTING DOMAIN, ARM REPEATS, KEYWDS 2 PHOSPHO-CTD, PHOSPHOPROTEIN, RNA-BINDING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.BECKER,B.LOLL,A.MEINHART REVDAT 8 16-OCT-24 3D9N 1 REMARK REVDAT 7 30-AUG-23 3D9N 1 REMARK SEQADV LINK REVDAT 6 25-OCT-17 3D9N 1 REMARK REVDAT 5 13-JUL-11 3D9N 1 VERSN REVDAT 4 24-FEB-09 3D9N 1 VERSN REVDAT 3 19-AUG-08 3D9N 1 JRNL REVDAT 2 29-JUL-08 3D9N 1 JRNL REVDAT 1 10-JUN-08 3D9N 0 JRNL AUTH R.BECKER,B.LOLL,A.MEINHART JRNL TITL SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO JRNL TITL 2 DIFFERENT PHOSPHORYLATED FORMS OF THE CARBOXYL-TERMINAL JRNL TITL 3 DOMAIN OF RNA POLYMERASE II. JRNL REF J.BIOL.CHEM. V. 283 22659 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18550522 JRNL DOI 10.1074/JBC.M803540200 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2150 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3166 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2402 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 246 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.017 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2647 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3618 ; 1.269 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 4.001 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;36.904 ;24.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;12.508 ;15.118 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.395 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1939 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1354 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1842 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 199 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1588 ; 0.768 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2570 ; 1.216 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1170 ; 2.006 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1023 ; 3.116 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 44.5748 4.1145 16.7806 REMARK 3 T TENSOR REMARK 3 T11: -0.1910 T22: -0.1809 REMARK 3 T33: -0.1635 T12: -0.0007 REMARK 3 T13: -0.0126 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.7433 L22: 1.9915 REMARK 3 L33: 4.4930 L12: 0.4025 REMARK 3 L13: 0.9881 L23: 0.9830 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: -0.1056 S13: 0.1141 REMARK 3 S21: -0.0579 S22: -0.1528 S23: 0.0995 REMARK 3 S31: -0.0911 S32: -0.1164 S33: 0.1704 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3373 14.6198 -9.8896 REMARK 3 T TENSOR REMARK 3 T11: -0.1947 T22: -0.1695 REMARK 3 T33: -0.1272 T12: -0.0008 REMARK 3 T13: -0.0266 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.3860 L22: 2.2354 REMARK 3 L33: 4.2850 L12: -0.0382 REMARK 3 L13: 0.5748 L23: 0.8438 REMARK 3 S TENSOR REMARK 3 S11: -0.0782 S12: 0.0414 S13: -0.0576 REMARK 3 S21: 0.0388 S22: 0.1201 S23: -0.1152 REMARK 3 S31: -0.0821 S32: 0.0176 S33: -0.0419 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Z -1 Z 6 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0304 7.5489 -7.3469 REMARK 3 T TENSOR REMARK 3 T11: -0.0439 T22: 0.1646 REMARK 3 T33: 0.1088 T12: -0.0843 REMARK 3 T13: -0.0254 T23: 0.0612 REMARK 3 L TENSOR REMARK 3 L11: 19.6434 L22: 21.1682 REMARK 3 L33: 31.0596 L12: -5.6604 REMARK 3 L13: 9.1161 L23: -16.9077 REMARK 3 S TENSOR REMARK 3 S11: 0.5769 S12: -1.1262 S13: -1.2553 REMARK 3 S21: -0.0929 S22: 0.2414 S23: 1.6563 REMARK 3 S31: 0.5589 S32: -1.8712 S33: -0.8183 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Y -1 Y 6 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9664 -1.0647 13.5314 REMARK 3 T TENSOR REMARK 3 T11: 0.1941 T22: 0.2576 REMARK 3 T33: 0.1482 T12: -0.0467 REMARK 3 T13: -0.0148 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 27.2282 L22: 41.1051 REMARK 3 L33: 28.4571 L12: -9.1340 REMARK 3 L13: 21.3673 L23: -28.2550 REMARK 3 S TENSOR REMARK 3 S11: 0.5587 S12: 0.6267 S13: -1.3938 REMARK 3 S21: -0.4504 S22: -0.4771 S23: 2.0548 REMARK 3 S31: 0.8904 S32: -0.9917 S33: -0.0816 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D9N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0001 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44673 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: PDB ENTRY 3D9J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2 M (NH4)2SO4, 1% (V/V) ETHYLENE REMARK 280 GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.19500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.79250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.59750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 MET B 1 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 TYR Y -6 REMARK 465 SEP Y -5 REMARK 465 PRO Y -4 REMARK 465 THR Y -3 REMARK 465 SER Y -2 REMARK 465 SEP Y 7 REMARK 465 TYR Z -6 REMARK 465 SEP Z -5 REMARK 465 PRO Z -4 REMARK 465 THR Z -3 REMARK 465 SER Z -2 REMARK 465 SEP Z 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 101 41.75 -87.77 REMARK 500 ARG B 101 34.81 -85.90 REMARK 500 ARG B 101 36.07 -87.02 REMARK 500 PRO Y 3 67.34 -65.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1114 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1115 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SZ9 RELATED DB: PDB REMARK 900 THE RNA POLYMERASE II CTD IN MRNA PROCESSING: BETA-TURN RECOGNITION REMARK 900 AND BETA-SPIRAL MODEL REMARK 900 RELATED ID: 1SZA RELATED DB: PDB REMARK 900 THE RNA POLYMERASE II CTD IN MRNA PROCESSING: BETA-TURN RECOGNITION REMARK 900 AND BETA-SPIRAL MODEL REMARK 900 RELATED ID: 2BF0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RPR OF PCF11 REMARK 900 RELATED ID: 3CLJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE RNA POLYMERASE II CTD-INTERACTING DOMAIN OF NRD1 REMARK 900 RELATED ID: 6404 RELATED DB: BMRB REMARK 900 BACKBONE ASSIGNMENT OF PCF11 CTD BINDING DOMAIN REMARK 900 RELATED ID: 3D9I RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II REMARK 900 RELATED ID: 3D9J RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II REMARK 900 RELATED ID: 3D9K RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER2 AND SER5) REMARK 900 RELATED ID: 3D9L RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER2) REMARK 900 RELATED ID: 3D9M RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER5) REMARK 900 RELATED ID: 3D9O RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD UNPHOSPHORYLATED) REMARK 900 RELATED ID: 3D9P RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER2 AND SER5) DBREF 3D9N A 1 136 UNP Q9UPN6 RBM16_HUMAN 1 136 DBREF 3D9N B 1 136 UNP Q9UPN6 RBM16_HUMAN 1 136 DBREF 3D9N Y -6 7 PDB 3D9N 3D9N -6 7 DBREF 3D9N Z -6 7 PDB 3D9N 3D9N -6 7 SEQADV 3D9N ALA A 137 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N LEU A 138 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N GLU A 139 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N HIS A 140 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N HIS A 141 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N HIS A 142 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N HIS A 143 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N HIS A 144 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N HIS A 145 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N ALA B 137 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N LEU B 138 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N GLU B 139 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N HIS B 140 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N HIS B 141 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N HIS B 142 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N HIS B 143 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N HIS B 144 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9N HIS B 145 UNP Q9UPN6 EXPRESSION TAG SEQRES 1 A 145 MET GLU ALA VAL LYS THR PHE ASN SER GLU LEU TYR SER SEQRES 2 A 145 LEU ASN ASP TYR LYS PRO PRO ILE SER LYS ALA LYS MET SEQRES 3 A 145 THR GLN ILE THR LYS ALA ALA ILE LYS ALA ILE LYS PHE SEQRES 4 A 145 TYR LYS HIS VAL VAL GLN SER VAL GLU LYS PHE ILE GLN SEQRES 5 A 145 LYS CYS LYS PRO GLU TYR LYS VAL PRO GLY LEU TYR VAL SEQRES 6 A 145 ILE ASP SER ILE VAL ARG GLN SER ARG HIS GLN PHE GLY SEQRES 7 A 145 GLN GLU LYS ASP VAL PHE ALA PRO ARG PHE SER ASN ASN SEQRES 8 A 145 ILE ILE SER THR PHE GLN ASN LEU TYR ARG CYS PRO GLY SEQRES 9 A 145 ASP ASP LYS SER LYS ILE VAL ARG VAL LEU ASN LEU TRP SEQRES 10 A 145 GLN LYS ASN ASN VAL PHE LYS SER GLU ILE ILE GLN PRO SEQRES 11 A 145 LEU LEU ASP MET ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 12 A 145 HIS HIS SEQRES 1 B 145 MET GLU ALA VAL LYS THR PHE ASN SER GLU LEU TYR SER SEQRES 2 B 145 LEU ASN ASP TYR LYS PRO PRO ILE SER LYS ALA LYS MET SEQRES 3 B 145 THR GLN ILE THR LYS ALA ALA ILE LYS ALA ILE LYS PHE SEQRES 4 B 145 TYR LYS HIS VAL VAL GLN SER VAL GLU LYS PHE ILE GLN SEQRES 5 B 145 LYS CYS LYS PRO GLU TYR LYS VAL PRO GLY LEU TYR VAL SEQRES 6 B 145 ILE ASP SER ILE VAL ARG GLN SER ARG HIS GLN PHE GLY SEQRES 7 B 145 GLN GLU LYS ASP VAL PHE ALA PRO ARG PHE SER ASN ASN SEQRES 8 B 145 ILE ILE SER THR PHE GLN ASN LEU TYR ARG CYS PRO GLY SEQRES 9 B 145 ASP ASP LYS SER LYS ILE VAL ARG VAL LEU ASN LEU TRP SEQRES 10 B 145 GLN LYS ASN ASN VAL PHE LYS SER GLU ILE ILE GLN PRO SEQRES 11 B 145 LEU LEU ASP MET ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 12 B 145 HIS HIS SEQRES 1 Y 14 TYR SEP PRO THR SER PRO SEP TYR SEP PRO THR SER PRO SEQRES 2 Y 14 SEP SEQRES 1 Z 14 TYR SEP PRO THR SER PRO SEP TYR SEP PRO THR SER PRO SEQRES 2 Z 14 SEP MODRES 3D9N SEP Y 0 SER PHOSPHOSERINE MODRES 3D9N SEP Y 2 SER PHOSPHOSERINE MODRES 3D9N SEP Z 0 SER PHOSPHOSERINE MODRES 3D9N SEP Z 2 SER PHOSPHOSERINE HET SEP Y 0 10 HET SEP Y 2 10 HET SEP Z 0 10 HET SEP Z 2 10 HET SO4 A1004 5 HET SO4 A1010 5 HET SO4 A1112 5 HET SO4 A1113 5 HET SO4 A1114 5 HET SO4 A1115 5 HET SO4 B1007 5 HET SO4 B1008 5 HET SO4 B1009 5 HET SO4 B1111 5 HETNAM SEP PHOSPHOSERINE HETNAM SO4 SULFATE ION HETSYN SEP PHOSPHONOSERINE FORMUL 3 SEP 4(C3 H8 N O6 P) FORMUL 5 SO4 10(O4 S 2-) FORMUL 15 HOH *246(H2 O) HELIX 1 1 GLU A 2 SER A 13 1 12 HELIX 2 2 LEU A 14 TYR A 17 5 4 HELIX 3 3 SER A 22 ALA A 36 1 15 HELIX 4 4 PHE A 39 CYS A 54 1 16 HELIX 5 5 LYS A 55 GLU A 57 5 3 HELIX 6 6 TYR A 58 GLY A 78 1 21 HELIX 7 7 VAL A 83 ASN A 90 1 8 HELIX 8 8 ASN A 91 TYR A 100 1 10 HELIX 9 9 PRO A 103 ASP A 105 5 3 HELIX 10 10 ASP A 106 ASN A 120 1 15 HELIX 11 11 LYS A 124 GLU A 139 1 16 HELIX 12 12 GLU B 2 SER B 13 1 12 HELIX 13 13 LEU B 14 TYR B 17 5 4 HELIX 14 14 SER B 22 ALA B 36 1 15 HELIX 15 15 PHE B 39 CYS B 54 1 16 HELIX 16 16 LYS B 55 GLU B 57 5 3 HELIX 17 17 TYR B 58 GLY B 78 1 21 HELIX 18 18 VAL B 83 ASN B 90 1 8 HELIX 19 19 ASN B 91 TYR B 100 1 10 HELIX 20 20 PRO B 103 ASP B 105 5 3 HELIX 21 21 ASP B 106 ASN B 120 1 15 HELIX 22 22 LYS B 124 HIS B 141 1 18 LINK C PRO Y -1 N SEP Y 0 1555 1555 1.34 LINK C SEP Y 0 N TYR Y 1 1555 1555 1.33 LINK C TYR Y 1 N SEP Y 2 1555 1555 1.33 LINK C SEP Y 2 N PRO Y 3 1555 1555 1.35 LINK C PRO Z -1 N SEP Z 0 1555 1555 1.34 LINK C SEP Z 0 N TYR Z 1 1555 1555 1.33 LINK C TYR Z 1 N SEP Z 2 1555 1555 1.33 LINK C SEP Z 2 N PRO Z 3 1555 1555 1.35 CISPEP 1 PRO A 19 PRO A 20 0 2.66 CISPEP 2 PRO B 19 PRO B 20 0 3.71 SITE 1 AC1 3 LYS A 35 ASN A 91 SER A 94 SITE 1 AC2 3 TYR B 40 ARG B 87 ASN B 90 SITE 1 AC3 2 LYS B 41 ARG B 87 SITE 1 AC4 3 LYS B 35 ASN B 91 SER B 94 SITE 1 AC5 4 GLN A 72 HIS A 75 GLN A 97 ARG A 101 SITE 1 AC6 3 LYS A 81 TYR B 64 LYS B 109 SITE 1 AC7 4 PRO A 20 TYR A 64 LYS A 109 TYR Y 1 SITE 1 AC8 2 LYS A 41 ARG A 87 SITE 1 AC9 4 TYR A 40 LYS A 41 ARG A 87 ASN A 90 SITE 1 BC1 6 ARG A 71 LEU A 116 ASN A 120 ALA B 136 SITE 2 BC1 6 HIS B 140 PRO Y 3 CRYST1 57.530 57.530 106.390 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009399 0.00000