data_3D9O # _entry.id 3D9O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3D9O pdb_00003d9o 10.2210/pdb3d9o/pdb RCSB RCSB047767 ? ? WWPDB D_1000047767 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-08-30 6 'Structure model' 1 5 2023-11-15 7 'Structure model' 1 6 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Data collection' 9 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' pdbx_initial_refinement_model 9 6 'Structure model' chem_comp_atom 10 6 'Structure model' chem_comp_bond 11 7 'Structure model' pdbx_entry_details 12 7 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 9 6 'Structure model' '_chem_comp_atom.atom_id' 10 6 'Structure model' '_chem_comp_bond.atom_id_2' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3D9O _pdbx_database_status.recvd_initial_deposition_date 2008-05-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1sz9 'The RNA polymerase II CTD in mRNA processing: beta-turn recognition and beta-spiral model' unspecified PDB 1sza 'The RNA polymerase II CTD in mRNA processing: beta-turn recognition and beta-spiral model' unspecified PDB 2bf0 'CRYSTAL STRUCTURE OF THE RPR OF PCF11' unspecified PDB 3clj 'Structure of the RNA polymerase II CTD-interacting domain of Nrd1' unspecified BMRB 6404 'Backbone assignment of PCF11 CTD binding domain' unspecified PDB 3D9I ;Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-POLYMERASE II ; unspecified PDB 3D9J ;Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-POLYMERASE II ; unspecified PDB 3D9K ;Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-POLYMERASE II (CTD phosphorylated at SER2 AND SER5) ; unspecified PDB 3D9L ;Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-POLYMERASE II (CTD phosphorylated at SER2) ; unspecified PDB 3D9M ;Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-POLYMERASE II (CTD phosphorylated at SER5) ; unspecified PDB 3D9N ;Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-POLYMERASE II (CTD phosphorylated at SER2 and SER7) ; unspecified PDB 3D9P ;Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-POLYMERASE II (CTD PHOSPHORYLATED AT SER2 AND SER5) ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Becker, R.' 1 'Loll, B.' 2 'Meinhart, A.' 3 # _citation.id primary _citation.title ;Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 283 _citation.page_first 22659 _citation.page_last 22669 _citation.year 2008 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18550522 _citation.pdbx_database_id_DOI 10.1074/jbc.M803540200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Becker, R.' 1 ? primary 'Loll, B.' 2 ? primary 'Meinhart, A.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA-binding protein 16' 17160.238 2 ? 'N15M, Y17M' 'CTD INTERACTING DOMAIN OF SCAF8, UNP residues 1-136' ? 2 polymer syn CTD-PEPTIDE 1457.496 1 ? ? ? ? 3 non-polymer syn 'AMMONIUM ION' 18.038 2 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 6 ? ? ? ? 5 water nat water 18.015 127 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNA-binding motif protein 16' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(MSE)EAVKTFNSELYSL(MSE)D(MSE)KPPISKAK(MSE)TQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLY VIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLD(MSE)AAALEH HHHHH ; ;MEAVKTFNSELYSLMDMKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQE KDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAALEHHHHHH ; A,B ? 2 'polypeptide(L)' no no YSPTSPSYSPTSPS YSPTSPSYSPTSPS Z ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'AMMONIUM ION' NH4 4 'SULFATE ION' SO4 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLU n 1 3 ALA n 1 4 VAL n 1 5 LYS n 1 6 THR n 1 7 PHE n 1 8 ASN n 1 9 SER n 1 10 GLU n 1 11 LEU n 1 12 TYR n 1 13 SER n 1 14 LEU n 1 15 MSE n 1 16 ASP n 1 17 MSE n 1 18 LYS n 1 19 PRO n 1 20 PRO n 1 21 ILE n 1 22 SER n 1 23 LYS n 1 24 ALA n 1 25 LYS n 1 26 MSE n 1 27 THR n 1 28 GLN n 1 29 ILE n 1 30 THR n 1 31 LYS n 1 32 ALA n 1 33 ALA n 1 34 ILE n 1 35 LYS n 1 36 ALA n 1 37 ILE n 1 38 LYS n 1 39 PHE n 1 40 TYR n 1 41 LYS n 1 42 HIS n 1 43 VAL n 1 44 VAL n 1 45 GLN n 1 46 SER n 1 47 VAL n 1 48 GLU n 1 49 LYS n 1 50 PHE n 1 51 ILE n 1 52 GLN n 1 53 LYS n 1 54 CYS n 1 55 LYS n 1 56 PRO n 1 57 GLU n 1 58 TYR n 1 59 LYS n 1 60 VAL n 1 61 PRO n 1 62 GLY n 1 63 LEU n 1 64 TYR n 1 65 VAL n 1 66 ILE n 1 67 ASP n 1 68 SER n 1 69 ILE n 1 70 VAL n 1 71 ARG n 1 72 GLN n 1 73 SER n 1 74 ARG n 1 75 HIS n 1 76 GLN n 1 77 PHE n 1 78 GLY n 1 79 GLN n 1 80 GLU n 1 81 LYS n 1 82 ASP n 1 83 VAL n 1 84 PHE n 1 85 ALA n 1 86 PRO n 1 87 ARG n 1 88 PHE n 1 89 SER n 1 90 ASN n 1 91 ASN n 1 92 ILE n 1 93 ILE n 1 94 SER n 1 95 THR n 1 96 PHE n 1 97 GLN n 1 98 ASN n 1 99 LEU n 1 100 TYR n 1 101 ARG n 1 102 CYS n 1 103 PRO n 1 104 GLY n 1 105 ASP n 1 106 ASP n 1 107 LYS n 1 108 SER n 1 109 LYS n 1 110 ILE n 1 111 VAL n 1 112 ARG n 1 113 VAL n 1 114 LEU n 1 115 ASN n 1 116 LEU n 1 117 TRP n 1 118 GLN n 1 119 LYS n 1 120 ASN n 1 121 ASN n 1 122 VAL n 1 123 PHE n 1 124 LYS n 1 125 SER n 1 126 GLU n 1 127 ILE n 1 128 ILE n 1 129 GLN n 1 130 PRO n 1 131 LEU n 1 132 LEU n 1 133 ASP n 1 134 MSE n 1 135 ALA n 1 136 ALA n 1 137 ALA n 1 138 LEU n 1 139 GLU n 1 140 HIS n 1 141 HIS n 1 142 HIS n 1 143 HIS n 1 144 HIS n 1 145 HIS n 2 1 TYR n 2 2 SER n 2 3 PRO n 2 4 THR n 2 5 SER n 2 6 PRO n 2 7 SER n 2 8 TYR n 2 9 SER n 2 10 PRO n 2 11 THR n 2 12 SER n 2 13 PRO n 2 14 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name man _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'RBM16, KIAA1116' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'PEPTIDE DERIVED FROM THE CONSERVED REPEAT SEQUENCE IN RNA POLYMERASE II CTD' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NH4 non-polymer . 'AMMONIUM ION' ? 'H4 N 1' 18.038 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 MSE 15 15 15 MSE MSE A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 MSE 17 17 17 MSE MSE A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 MSE 26 26 26 MSE MSE A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 HIS 42 42 42 HIS HIS A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 CYS 54 54 54 CYS CYS A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 HIS 75 75 75 HIS HIS A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 GLN 97 97 97 GLN GLN A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 CYS 102 102 102 CYS CYS A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 TRP 117 117 117 TRP TRP A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 ASN 120 120 120 ASN ASN A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 GLN 129 129 129 GLN GLN A . n A 1 130 PRO 130 130 130 PRO PRO A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 MSE 134 134 134 MSE MSE A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 GLU 139 139 ? ? ? A . n A 1 140 HIS 140 140 ? ? ? A . n A 1 141 HIS 141 141 ? ? ? A . n A 1 142 HIS 142 142 ? ? ? A . n A 1 143 HIS 143 143 ? ? ? A . n A 1 144 HIS 144 144 ? ? ? A . n A 1 145 HIS 145 145 ? ? ? A . n B 1 1 MSE 1 1 1 MSE MSE B . n B 1 2 GLU 2 2 2 GLU GLU B . n B 1 3 ALA 3 3 3 ALA ALA B . n B 1 4 VAL 4 4 4 VAL VAL B . n B 1 5 LYS 5 5 5 LYS LYS B . n B 1 6 THR 6 6 6 THR THR B . n B 1 7 PHE 7 7 7 PHE PHE B . n B 1 8 ASN 8 8 8 ASN ASN B . n B 1 9 SER 9 9 9 SER SER B . n B 1 10 GLU 10 10 10 GLU GLU B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 TYR 12 12 12 TYR TYR B . n B 1 13 SER 13 13 13 SER SER B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 MSE 15 15 15 MSE MSE B . n B 1 16 ASP 16 16 16 ASP ASP B . n B 1 17 MSE 17 17 17 MSE MSE B . n B 1 18 LYS 18 18 18 LYS LYS B . n B 1 19 PRO 19 19 19 PRO PRO B . n B 1 20 PRO 20 20 20 PRO PRO B . n B 1 21 ILE 21 21 21 ILE ILE B . n B 1 22 SER 22 22 22 SER SER B . n B 1 23 LYS 23 23 23 LYS LYS B . n B 1 24 ALA 24 24 24 ALA ALA B . n B 1 25 LYS 25 25 25 LYS LYS B . n B 1 26 MSE 26 26 26 MSE MSE B . n B 1 27 THR 27 27 27 THR THR B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 ILE 29 29 29 ILE ILE B . n B 1 30 THR 30 30 30 THR THR B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 ALA 32 32 32 ALA ALA B . n B 1 33 ALA 33 33 33 ALA ALA B . n B 1 34 ILE 34 34 34 ILE ILE B . n B 1 35 LYS 35 35 35 LYS LYS B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 ILE 37 37 37 ILE ILE B . n B 1 38 LYS 38 38 38 LYS LYS B . n B 1 39 PHE 39 39 39 PHE PHE B . n B 1 40 TYR 40 40 40 TYR TYR B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 HIS 42 42 42 HIS HIS B . n B 1 43 VAL 43 43 43 VAL VAL B . n B 1 44 VAL 44 44 44 VAL VAL B . n B 1 45 GLN 45 45 45 GLN GLN B . n B 1 46 SER 46 46 46 SER SER B . n B 1 47 VAL 47 47 47 VAL VAL B . n B 1 48 GLU 48 48 48 GLU GLU B . n B 1 49 LYS 49 49 49 LYS LYS B . n B 1 50 PHE 50 50 50 PHE PHE B . n B 1 51 ILE 51 51 51 ILE ILE B . n B 1 52 GLN 52 52 52 GLN GLN B . n B 1 53 LYS 53 53 53 LYS LYS B . n B 1 54 CYS 54 54 54 CYS CYS B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 PRO 56 56 56 PRO PRO B . n B 1 57 GLU 57 57 57 GLU GLU B . n B 1 58 TYR 58 58 58 TYR TYR B . n B 1 59 LYS 59 59 59 LYS LYS B . n B 1 60 VAL 60 60 60 VAL VAL B . n B 1 61 PRO 61 61 61 PRO PRO B . n B 1 62 GLY 62 62 62 GLY GLY B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 TYR 64 64 64 TYR TYR B . n B 1 65 VAL 65 65 65 VAL VAL B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 ASP 67 67 67 ASP ASP B . n B 1 68 SER 68 68 68 SER SER B . n B 1 69 ILE 69 69 69 ILE ILE B . n B 1 70 VAL 70 70 70 VAL VAL B . n B 1 71 ARG 71 71 71 ARG ARG B . n B 1 72 GLN 72 72 72 GLN GLN B . n B 1 73 SER 73 73 73 SER SER B . n B 1 74 ARG 74 74 74 ARG ARG B . n B 1 75 HIS 75 75 75 HIS HIS B . n B 1 76 GLN 76 76 76 GLN GLN B . n B 1 77 PHE 77 77 77 PHE PHE B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 GLN 79 79 79 GLN GLN B . n B 1 80 GLU 80 80 80 GLU GLU B . n B 1 81 LYS 81 81 81 LYS LYS B . n B 1 82 ASP 82 82 82 ASP ASP B . n B 1 83 VAL 83 83 83 VAL VAL B . n B 1 84 PHE 84 84 84 PHE PHE B . n B 1 85 ALA 85 85 85 ALA ALA B . n B 1 86 PRO 86 86 86 PRO PRO B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 PHE 88 88 88 PHE PHE B . n B 1 89 SER 89 89 89 SER SER B . n B 1 90 ASN 90 90 90 ASN ASN B . n B 1 91 ASN 91 91 91 ASN ASN B . n B 1 92 ILE 92 92 92 ILE ILE B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 SER 94 94 94 SER SER B . n B 1 95 THR 95 95 95 THR THR B . n B 1 96 PHE 96 96 96 PHE PHE B . n B 1 97 GLN 97 97 97 GLN GLN B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 LEU 99 99 99 LEU LEU B . n B 1 100 TYR 100 100 100 TYR TYR B . n B 1 101 ARG 101 101 101 ARG ARG B . n B 1 102 CYS 102 102 102 CYS CYS B . n B 1 103 PRO 103 103 103 PRO PRO B . n B 1 104 GLY 104 104 104 GLY GLY B . n B 1 105 ASP 105 105 105 ASP ASP B . n B 1 106 ASP 106 106 106 ASP ASP B . n B 1 107 LYS 107 107 107 LYS LYS B . n B 1 108 SER 108 108 108 SER SER B . n B 1 109 LYS 109 109 109 LYS LYS B . n B 1 110 ILE 110 110 110 ILE ILE B . n B 1 111 VAL 111 111 111 VAL VAL B . n B 1 112 ARG 112 112 112 ARG ARG B . n B 1 113 VAL 113 113 113 VAL VAL B . n B 1 114 LEU 114 114 114 LEU LEU B . n B 1 115 ASN 115 115 115 ASN ASN B . n B 1 116 LEU 116 116 116 LEU LEU B . n B 1 117 TRP 117 117 117 TRP TRP B . n B 1 118 GLN 118 118 118 GLN GLN B . n B 1 119 LYS 119 119 119 LYS LYS B . n B 1 120 ASN 120 120 120 ASN ASN B . n B 1 121 ASN 121 121 121 ASN ASN B . n B 1 122 VAL 122 122 122 VAL VAL B . n B 1 123 PHE 123 123 123 PHE PHE B . n B 1 124 LYS 124 124 124 LYS LYS B . n B 1 125 SER 125 125 125 SER SER B . n B 1 126 GLU 126 126 126 GLU GLU B . n B 1 127 ILE 127 127 127 ILE ILE B . n B 1 128 ILE 128 128 128 ILE ILE B . n B 1 129 GLN 129 129 129 GLN GLN B . n B 1 130 PRO 130 130 130 PRO PRO B . n B 1 131 LEU 131 131 131 LEU LEU B . n B 1 132 LEU 132 132 132 LEU LEU B . n B 1 133 ASP 133 133 133 ASP ASP B . n B 1 134 MSE 134 134 134 MSE MSE B . n B 1 135 ALA 135 135 135 ALA ALA B . n B 1 136 ALA 136 136 136 ALA ALA B . n B 1 137 ALA 137 137 137 ALA ALA B . n B 1 138 LEU 138 138 138 LEU LEU B . n B 1 139 GLU 139 139 139 GLU GLU B . n B 1 140 HIS 140 140 140 HIS HIS B . n B 1 141 HIS 141 141 ? ? ? B . n B 1 142 HIS 142 142 ? ? ? B . n B 1 143 HIS 143 143 ? ? ? B . n B 1 144 HIS 144 144 ? ? ? B . n B 1 145 HIS 145 145 ? ? ? B . n C 2 1 TYR 1 -6 ? ? ? Z . n C 2 2 SER 2 -5 ? ? ? Z . n C 2 3 PRO 3 -4 ? ? ? Z . n C 2 4 THR 4 -3 ? ? ? Z . n C 2 5 SER 5 -2 ? ? ? Z . n C 2 6 PRO 6 -1 -1 PRO PRO Z . n C 2 7 SER 7 0 0 SER SER Z . n C 2 8 TYR 8 1 1 TYR TYR Z . n C 2 9 SER 9 2 2 SER SER Z . n C 2 10 PRO 10 3 3 PRO PRO Z . n C 2 11 THR 11 4 4 THR THR Z . n C 2 12 SER 12 5 5 SER SER Z . n C 2 13 PRO 13 6 6 PRO PRO Z . n C 2 14 SER 14 7 7 SER SER Z . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NH4 1 401 401 NH4 NH4 A . E 4 SO4 1 500 500 SO4 SO4 A . F 4 SO4 1 501 501 SO4 SO4 A . G 4 SO4 1 502 502 SO4 SO4 A . H 3 NH4 1 402 402 NH4 NH4 B . I 4 SO4 1 504 504 SO4 SO4 B . J 4 SO4 1 505 505 SO4 SO4 B . K 4 SO4 1 507 507 SO4 SO4 Z . L 5 HOH 1 503 503 HOH HOH A . L 5 HOH 2 504 504 HOH HOH A . L 5 HOH 3 505 505 HOH HOH A . L 5 HOH 4 506 506 HOH HOH A . L 5 HOH 5 507 507 HOH HOH A . L 5 HOH 6 508 508 HOH HOH A . L 5 HOH 7 509 509 HOH HOH A . L 5 HOH 8 510 510 HOH HOH A . L 5 HOH 9 511 511 HOH HOH A . L 5 HOH 10 512 512 HOH HOH A . L 5 HOH 11 513 513 HOH HOH A . L 5 HOH 12 514 514 HOH HOH A . L 5 HOH 13 515 515 HOH HOH A . L 5 HOH 14 516 516 HOH HOH A . L 5 HOH 15 517 517 HOH HOH A . L 5 HOH 16 518 518 HOH HOH A . L 5 HOH 17 519 519 HOH HOH A . L 5 HOH 18 520 520 HOH HOH A . L 5 HOH 19 521 521 HOH HOH A . L 5 HOH 20 522 522 HOH HOH A . L 5 HOH 21 523 523 HOH HOH A . L 5 HOH 22 524 524 HOH HOH A . L 5 HOH 23 525 525 HOH HOH A . L 5 HOH 24 526 526 HOH HOH A . L 5 HOH 25 527 527 HOH HOH A . L 5 HOH 26 528 528 HOH HOH A . L 5 HOH 27 529 529 HOH HOH A . L 5 HOH 28 530 530 HOH HOH A . L 5 HOH 29 531 531 HOH HOH A . L 5 HOH 30 532 532 HOH HOH A . L 5 HOH 31 533 533 HOH HOH A . L 5 HOH 32 534 534 HOH HOH A . L 5 HOH 33 535 535 HOH HOH A . L 5 HOH 34 536 536 HOH HOH A . L 5 HOH 35 537 537 HOH HOH A . L 5 HOH 36 538 538 HOH HOH A . L 5 HOH 37 539 539 HOH HOH A . L 5 HOH 38 540 540 HOH HOH A . L 5 HOH 39 541 541 HOH HOH A . L 5 HOH 40 542 542 HOH HOH A . L 5 HOH 41 543 543 HOH HOH A . L 5 HOH 42 544 544 HOH HOH A . L 5 HOH 43 545 545 HOH HOH A . L 5 HOH 44 546 546 HOH HOH A . L 5 HOH 45 547 547 HOH HOH A . L 5 HOH 46 548 548 HOH HOH A . L 5 HOH 47 549 549 HOH HOH A . L 5 HOH 48 550 550 HOH HOH A . L 5 HOH 49 551 551 HOH HOH A . L 5 HOH 50 552 552 HOH HOH A . L 5 HOH 51 553 553 HOH HOH A . L 5 HOH 52 554 554 HOH HOH A . L 5 HOH 53 555 555 HOH HOH A . L 5 HOH 54 556 556 HOH HOH A . L 5 HOH 55 557 557 HOH HOH A . L 5 HOH 56 558 558 HOH HOH A . L 5 HOH 57 559 559 HOH HOH A . M 5 HOH 1 506 506 HOH HOH B . M 5 HOH 2 507 507 HOH HOH B . M 5 HOH 3 508 508 HOH HOH B . M 5 HOH 4 509 509 HOH HOH B . M 5 HOH 5 510 510 HOH HOH B . M 5 HOH 6 511 511 HOH HOH B . M 5 HOH 7 512 512 HOH HOH B . M 5 HOH 8 513 513 HOH HOH B . M 5 HOH 9 514 514 HOH HOH B . M 5 HOH 10 515 515 HOH HOH B . M 5 HOH 11 516 516 HOH HOH B . M 5 HOH 12 517 517 HOH HOH B . M 5 HOH 13 518 518 HOH HOH B . M 5 HOH 14 519 519 HOH HOH B . M 5 HOH 15 520 520 HOH HOH B . M 5 HOH 16 521 521 HOH HOH B . M 5 HOH 17 522 522 HOH HOH B . M 5 HOH 18 523 523 HOH HOH B . M 5 HOH 19 524 524 HOH HOH B . M 5 HOH 20 525 525 HOH HOH B . M 5 HOH 21 526 526 HOH HOH B . M 5 HOH 22 527 527 HOH HOH B . M 5 HOH 23 528 528 HOH HOH B . M 5 HOH 24 529 529 HOH HOH B . M 5 HOH 25 530 530 HOH HOH B . M 5 HOH 26 531 531 HOH HOH B . M 5 HOH 27 532 532 HOH HOH B . M 5 HOH 28 533 533 HOH HOH B . M 5 HOH 29 534 534 HOH HOH B . M 5 HOH 30 535 535 HOH HOH B . M 5 HOH 31 536 536 HOH HOH B . M 5 HOH 32 537 537 HOH HOH B . M 5 HOH 33 538 538 HOH HOH B . M 5 HOH 34 539 539 HOH HOH B . M 5 HOH 35 540 540 HOH HOH B . M 5 HOH 36 541 541 HOH HOH B . M 5 HOH 37 542 542 HOH HOH B . M 5 HOH 38 543 543 HOH HOH B . M 5 HOH 39 544 544 HOH HOH B . M 5 HOH 40 545 545 HOH HOH B . M 5 HOH 41 546 546 HOH HOH B . M 5 HOH 42 547 547 HOH HOH B . M 5 HOH 43 548 548 HOH HOH B . M 5 HOH 44 549 549 HOH HOH B . M 5 HOH 45 550 550 HOH HOH B . M 5 HOH 46 551 551 HOH HOH B . M 5 HOH 47 552 552 HOH HOH B . M 5 HOH 48 553 553 HOH HOH B . M 5 HOH 49 554 554 HOH HOH B . M 5 HOH 50 555 555 HOH HOH B . M 5 HOH 51 556 556 HOH HOH B . M 5 HOH 52 557 557 HOH HOH B . M 5 HOH 53 558 558 HOH HOH B . M 5 HOH 54 559 559 HOH HOH B . M 5 HOH 55 560 560 HOH HOH B . M 5 HOH 56 561 561 HOH HOH B . M 5 HOH 57 562 562 HOH HOH B . M 5 HOH 58 563 563 HOH HOH B . M 5 HOH 59 564 564 HOH HOH B . M 5 HOH 60 565 565 HOH HOH B . M 5 HOH 61 566 566 HOH HOH B . M 5 HOH 62 567 567 HOH HOH B . M 5 HOH 63 568 568 HOH HOH B . M 5 HOH 64 569 569 HOH HOH B . M 5 HOH 65 570 570 HOH HOH B . M 5 HOH 66 571 571 HOH HOH B . N 5 HOH 1 53 53 HOH HOH Z . N 5 HOH 2 87 87 HOH HOH Z . N 5 HOH 3 95 95 HOH HOH Z . N 5 HOH 4 113 113 HOH HOH Z . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MAR345 'data collection' SOFTWARE ? 2 XDS 'data reduction' . ? 3 XSCALE 'data scaling' . ? 4 REFMAC phasing 5.2.0019 ? 5 # _cell.entry_id 3D9O _cell.length_a 57.444 _cell.length_b 57.444 _cell.length_c 107.675 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D9O _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3D9O _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '1.2M Li2SO4, 1.6M (NH4)2SO4, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2007-09-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9794 # _reflns.entry_id 3D9O _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 50.0 _reflns.number_all ? _reflns.number_obs 23561 _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06 _reflns.pdbx_netI_over_sigmaI 17.4 _reflns.B_iso_Wilson_estimate 36.3 _reflns.pdbx_redundancy 3.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.2 _reflns_shell.percent_possible_all 95.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.38 _reflns_shell.meanI_over_sigI_obs 4.3 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 11086 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3D9O _refine.ls_number_reflns_obs 22384 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.76 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.92 _refine.ls_R_factor_obs 0.20613 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2044 _refine.ls_R_factor_R_free 0.23994 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1177 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.B_iso_mean 33.719 _refine.aniso_B[1][1] 0.43 _refine.aniso_B[2][2] 0.43 _refine.aniso_B[3][3] -0.86 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'Pdb entry 3D9J' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.189 _refine.pdbx_overall_ESU_R_Free 0.164 _refine.overall_SU_ML 0.118 _refine.overall_SU_B 8.130 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2315 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 2474 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 40.76 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 2456 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.070 1.976 ? 3323 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.563 5.000 ? 299 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.409 24.673 ? 107 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.898 15.000 ? 478 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.218 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.082 0.200 ? 366 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1785 'X-RAY DIFFRACTION' ? r_nbd_refined 0.195 0.200 ? 1155 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.299 0.200 ? 1717 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.103 0.200 ? 126 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.169 0.200 ? 45 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.100 0.200 ? 9 'X-RAY DIFFRACTION' ? r_mcbond_it 0.771 1.500 ? 1517 'X-RAY DIFFRACTION' ? r_mcangle_it 0.932 2.000 ? 2409 'X-RAY DIFFRACTION' ? r_scbond_it 1.585 3.000 ? 1064 'X-RAY DIFFRACTION' ? r_scangle_it 2.333 4.500 ? 906 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 1650 _refine_ls_shell.R_factor_R_work 0.23 _refine_ls_shell.percent_reflns_obs 99.54 _refine_ls_shell.R_factor_R_free 0.285 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 88 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1650 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3D9O _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3D9O _struct.title ;Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D9O _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'SCAF8, RNA POLYMERASE II CTD INTERACTING DOMAIN, ARM REPEATS, PHOSPHO-CTD, Phosphoprotein, RNA-binding, Transcription' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 5 ? M N N 5 ? N N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RBM16_HUMAN Q9UPN6 1 ;MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQE KDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAA ; 1 ? 2 PDB 3D9O 3D9O 2 YSPTSPSYSPTSPS ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3D9O A 1 ? 136 ? Q9UPN6 1 ? 136 ? 1 136 2 1 3D9O B 1 ? 136 ? Q9UPN6 1 ? 136 ? 1 136 3 2 3D9O Z 1 ? 14 ? 3D9O -6 ? 7 ? -6 7 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3D9O MSE A 15 ? UNP Q9UPN6 ASN 15 'engineered mutation' 15 1 1 3D9O MSE A 17 ? UNP Q9UPN6 TYR 17 'engineered mutation' 17 2 1 3D9O ALA A 137 ? UNP Q9UPN6 ? ? 'expression tag' 137 3 1 3D9O LEU A 138 ? UNP Q9UPN6 ? ? 'expression tag' 138 4 1 3D9O GLU A 139 ? UNP Q9UPN6 ? ? 'expression tag' 139 5 1 3D9O HIS A 140 ? UNP Q9UPN6 ? ? 'expression tag' 140 6 1 3D9O HIS A 141 ? UNP Q9UPN6 ? ? 'expression tag' 141 7 1 3D9O HIS A 142 ? UNP Q9UPN6 ? ? 'expression tag' 142 8 1 3D9O HIS A 143 ? UNP Q9UPN6 ? ? 'expression tag' 143 9 1 3D9O HIS A 144 ? UNP Q9UPN6 ? ? 'expression tag' 144 10 1 3D9O HIS A 145 ? UNP Q9UPN6 ? ? 'expression tag' 145 11 2 3D9O MSE B 15 ? UNP Q9UPN6 ASN 15 'engineered mutation' 15 12 2 3D9O MSE B 17 ? UNP Q9UPN6 TYR 17 'engineered mutation' 17 13 2 3D9O ALA B 137 ? UNP Q9UPN6 ? ? 'expression tag' 137 14 2 3D9O LEU B 138 ? UNP Q9UPN6 ? ? 'expression tag' 138 15 2 3D9O GLU B 139 ? UNP Q9UPN6 ? ? 'expression tag' 139 16 2 3D9O HIS B 140 ? UNP Q9UPN6 ? ? 'expression tag' 140 17 2 3D9O HIS B 141 ? UNP Q9UPN6 ? ? 'expression tag' 141 18 2 3D9O HIS B 142 ? UNP Q9UPN6 ? ? 'expression tag' 142 19 2 3D9O HIS B 143 ? UNP Q9UPN6 ? ? 'expression tag' 143 20 2 3D9O HIS B 144 ? UNP Q9UPN6 ? ? 'expression tag' 144 21 2 3D9O HIS B 145 ? UNP Q9UPN6 ? ? 'expression tag' 145 22 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1770 ? 1 MORE -41 ? 1 'SSA (A^2)' 8230 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 B,C,H,I,J,K,M,N 2 1 A,D,E,F,G,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 2 ? SER A 13 ? GLU A 2 SER A 13 1 ? 12 HELX_P HELX_P2 2 LEU A 14 ? MSE A 17 ? LEU A 14 MSE A 17 5 ? 4 HELX_P HELX_P3 3 SER A 22 ? ALA A 36 ? SER A 22 ALA A 36 1 ? 15 HELX_P HELX_P4 4 PHE A 39 ? CYS A 54 ? PHE A 39 CYS A 54 1 ? 16 HELX_P HELX_P5 5 LYS A 55 ? GLU A 57 ? LYS A 55 GLU A 57 5 ? 3 HELX_P HELX_P6 6 TYR A 58 ? GLY A 78 ? TYR A 58 GLY A 78 1 ? 21 HELX_P HELX_P7 7 VAL A 83 ? ASN A 90 ? VAL A 83 ASN A 90 1 ? 8 HELX_P HELX_P8 8 ASN A 91 ? TYR A 100 ? ASN A 91 TYR A 100 1 ? 10 HELX_P HELX_P9 9 ARG A 101 ? CYS A 102 ? ARG A 101 CYS A 102 5 ? 2 HELX_P HELX_P10 10 PRO A 103 ? ASP A 105 ? PRO A 103 ASP A 105 5 ? 3 HELX_P HELX_P11 11 ASP A 106 ? ASN A 120 ? ASP A 106 ASN A 120 1 ? 15 HELX_P HELX_P12 12 LYS A 124 ? LEU A 138 ? LYS A 124 LEU A 138 1 ? 15 HELX_P HELX_P13 13 MSE B 1 ? SER B 13 ? MSE B 1 SER B 13 1 ? 13 HELX_P HELX_P14 14 LEU B 14 ? MSE B 17 ? LEU B 14 MSE B 17 5 ? 4 HELX_P HELX_P15 15 SER B 22 ? ALA B 36 ? SER B 22 ALA B 36 1 ? 15 HELX_P HELX_P16 16 PHE B 39 ? CYS B 54 ? PHE B 39 CYS B 54 1 ? 16 HELX_P HELX_P17 17 LYS B 55 ? GLU B 57 ? LYS B 55 GLU B 57 5 ? 3 HELX_P HELX_P18 18 TYR B 58 ? GLY B 78 ? TYR B 58 GLY B 78 1 ? 21 HELX_P HELX_P19 19 VAL B 83 ? ASN B 90 ? VAL B 83 ASN B 90 1 ? 8 HELX_P HELX_P20 20 ASN B 91 ? TYR B 100 ? ASN B 91 TYR B 100 1 ? 10 HELX_P HELX_P21 21 ARG B 101 ? CYS B 102 ? ARG B 101 CYS B 102 5 ? 2 HELX_P HELX_P22 22 PRO B 103 ? ASP B 105 ? PRO B 103 ASP B 105 5 ? 3 HELX_P HELX_P23 23 ASP B 106 ? ASN B 120 ? ASP B 106 ASN B 120 1 ? 15 HELX_P HELX_P24 24 LYS B 124 ? GLU B 139 ? LYS B 124 GLU B 139 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 14 C ? ? ? 1_555 A MSE 15 N ? ? A LEU 14 A MSE 15 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MSE 15 C ? ? ? 1_555 A ASP 16 N ? ? A MSE 15 A ASP 16 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A ASP 16 C ? ? ? 1_555 A MSE 17 N ? ? A ASP 16 A MSE 17 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale4 covale both ? A MSE 17 C ? ? ? 1_555 A LYS 18 N ? ? A MSE 17 A LYS 18 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale5 covale both ? A LYS 25 C ? ? ? 1_555 A MSE 26 N ? ? A LYS 25 A MSE 26 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? A MSE 26 C ? ? ? 1_555 A THR 27 N ? ? A MSE 26 A THR 27 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale7 covale both ? A ASP 133 C ? ? ? 1_555 A MSE 134 N ? ? A ASP 133 A MSE 134 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale8 covale both ? A MSE 134 C ? ? ? 1_555 A ALA 135 N ? ? A MSE 134 A ALA 135 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale9 covale both ? B MSE 1 C ? ? ? 1_555 B GLU 2 N ? ? B MSE 1 B GLU 2 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale10 covale both ? B LEU 14 C ? ? ? 1_555 B MSE 15 N ? ? B LEU 14 B MSE 15 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale11 covale both ? B MSE 15 C ? ? ? 1_555 B ASP 16 N ? ? B MSE 15 B ASP 16 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale12 covale both ? B ASP 16 C ? ? ? 1_555 B MSE 17 N ? ? B ASP 16 B MSE 17 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale13 covale both ? B MSE 17 C ? ? ? 1_555 B LYS 18 N ? ? B MSE 17 B LYS 18 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale14 covale both ? B LYS 25 C ? ? ? 1_555 B MSE 26 N ? ? B LYS 25 B MSE 26 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale15 covale both ? B MSE 26 C ? ? ? 1_555 B THR 27 N ? ? B MSE 26 B THR 27 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale16 covale both ? B ASP 133 C ? ? ? 1_555 B MSE 134 N ? ? B ASP 133 B MSE 134 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale17 covale both ? B MSE 134 C ? ? ? 1_555 B ALA 135 N ? ? B MSE 134 B ALA 135 1_555 ? ? ? ? ? ? ? 1.334 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 15 ? . . . . MSE A 15 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 17 ? . . . . MSE A 17 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 26 ? . . . . MSE A 26 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE A 134 ? . . . . MSE A 134 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE B 1 ? . . . . MSE B 1 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 6 MSE B 15 ? . . . . MSE B 15 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 7 MSE B 17 ? . . . . MSE B 17 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 8 MSE B 26 ? . . . . MSE B 26 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 9 MSE B 134 ? . . . . MSE B 134 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 19 A . ? PRO 19 A PRO 20 A ? PRO 20 A 1 4.23 2 PRO 19 B . ? PRO 19 B PRO 20 B ? PRO 20 B 1 10.23 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NH4 401 ? 5 'BINDING SITE FOR RESIDUE NH4 A 401' AC2 Software B NH4 402 ? 4 'BINDING SITE FOR RESIDUE NH4 B 402' AC3 Software A SO4 500 ? 3 'BINDING SITE FOR RESIDUE SO4 A 500' AC4 Software A SO4 501 ? 2 'BINDING SITE FOR RESIDUE SO4 A 501' AC5 Software A SO4 502 ? 3 'BINDING SITE FOR RESIDUE SO4 A 502' AC6 Software B SO4 504 ? 3 'BINDING SITE FOR RESIDUE SO4 B 504' AC7 Software B SO4 505 ? 2 'BINDING SITE FOR RESIDUE SO4 B 505' AC8 Software Z SO4 507 ? 3 'BINDING SITE FOR RESIDUE SO4 Z 507' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ILE A 37 ? ILE A 37 . ? 1_555 ? 2 AC1 5 SER A 73 ? SER A 73 . ? 1_555 ? 3 AC1 5 PHE A 77 ? PHE A 77 . ? 1_555 ? 4 AC1 5 LYS A 81 ? LYS A 81 . ? 1_555 ? 5 AC1 5 ASP A 82 ? ASP A 82 . ? 1_555 ? 6 AC2 4 ILE B 37 ? ILE B 37 . ? 1_555 ? 7 AC2 4 SER B 73 ? SER B 73 . ? 1_555 ? 8 AC2 4 PHE B 77 ? PHE B 77 . ? 1_555 ? 9 AC2 4 ASP B 82 ? ASP B 82 . ? 1_555 ? 10 AC3 3 TYR A 40 ? TYR A 40 . ? 1_555 ? 11 AC3 3 ARG A 87 ? ARG A 87 . ? 1_555 ? 12 AC3 3 ASN A 90 ? ASN A 90 . ? 1_555 ? 13 AC4 2 LYS A 41 ? LYS A 41 . ? 1_555 ? 14 AC4 2 ARG A 87 ? ARG A 87 . ? 1_555 ? 15 AC5 3 LEU A 116 ? LEU A 116 . ? 1_555 ? 16 AC5 3 ASN A 120 ? ASN A 120 . ? 1_555 ? 17 AC5 3 HIS B 140 ? HIS B 140 . ? 2_655 ? 18 AC6 3 TYR B 40 ? TYR B 40 . ? 1_555 ? 19 AC6 3 ARG B 87 ? ARG B 87 . ? 1_555 ? 20 AC6 3 ASN B 90 ? ASN B 90 . ? 1_555 ? 21 AC7 2 LYS B 41 ? LYS B 41 . ? 1_555 ? 22 AC7 2 ARG B 87 ? ARG B 87 . ? 1_555 ? 23 AC8 3 ARG B 71 ? ARG B 71 . ? 1_555 ? 24 AC8 3 PRO C 13 ? PRO Z 6 . ? 1_555 ? 25 AC8 3 SER C 14 ? SER Z 7 . ? 1_555 ? # _pdbx_entry_details.entry_id 3D9O _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 15 A MSE 15 ? MET SELENOMETHIONINE 2 A MSE 17 A MSE 17 ? MET SELENOMETHIONINE 3 A MSE 26 A MSE 26 ? MET SELENOMETHIONINE 4 A MSE 134 A MSE 134 ? MET SELENOMETHIONINE 5 B MSE 1 B MSE 1 ? MET SELENOMETHIONINE 6 B MSE 15 B MSE 15 ? MET SELENOMETHIONINE 7 B MSE 17 B MSE 17 ? MET SELENOMETHIONINE 8 B MSE 26 B MSE 26 ? MET SELENOMETHIONINE 9 B MSE 134 B MSE 134 ? MET SELENOMETHIONINE # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 44.5055 3.8529 16.8574 -0.1812 -0.1441 -0.1246 0.0174 -0.0438 0.0345 2.8163 4.0973 7.0404 0.4661 0.5353 1.4791 -0.0367 0.1277 0.3551 -0.4633 -0.3843 0.1616 -0.3038 0.2391 0.4210 'X-RAY DIFFRACTION' 2 ? refined 24.4747 14.7122 -10.1054 -0.2456 -0.1924 -0.1513 -0.0069 -0.0318 -0.0038 2.8419 4.0831 6.2585 -0.4105 0.4980 2.1241 -0.1591 -0.1167 -0.1921 0.1311 0.2058 -0.2916 -0.0511 0.0137 -0.0468 'X-RAY DIFFRACTION' 3 ? refined 12.9090 9.0271 -7.8068 -0.0642 0.2230 0.0754 -0.0295 0.0333 0.0416 3.8572 46.1449 14.2951 13.2018 -2.5535 -5.2601 0.2617 -0.8204 -0.8886 1.7485 -0.7993 1.7034 -0.3664 -1.6137 0.5375 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 2 A 2 A 138 A 138 ? 'X-RAY DIFFRACTION' ? 2 2 B 1 B 1 B 140 B 140 ? 'X-RAY DIFFRACTION' ? 3 3 Z -1 C 6 Z 7 C 14 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A GLU 139 ? A GLU 139 3 1 Y 1 A HIS 140 ? A HIS 140 4 1 Y 1 A HIS 141 ? A HIS 141 5 1 Y 1 A HIS 142 ? A HIS 142 6 1 Y 1 A HIS 143 ? A HIS 143 7 1 Y 1 A HIS 144 ? A HIS 144 8 1 Y 1 A HIS 145 ? A HIS 145 9 1 Y 1 B HIS 141 ? B HIS 141 10 1 Y 1 B HIS 142 ? B HIS 142 11 1 Y 1 B HIS 143 ? B HIS 143 12 1 Y 1 B HIS 144 ? B HIS 144 13 1 Y 1 B HIS 145 ? B HIS 145 14 1 Y 1 Z TYR -6 ? C TYR 1 15 1 Y 1 Z SER -5 ? C SER 2 16 1 Y 1 Z PRO -4 ? C PRO 3 17 1 Y 1 Z THR -3 ? C THR 4 18 1 Y 1 Z SER -2 ? C SER 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MSE N N N N 230 MSE CA C N S 231 MSE C C N N 232 MSE O O N N 233 MSE OXT O N N 234 MSE CB C N N 235 MSE CG C N N 236 MSE SE SE N N 237 MSE CE C N N 238 MSE H H N N 239 MSE H2 H N N 240 MSE HA H N N 241 MSE HXT H N N 242 MSE HB2 H N N 243 MSE HB3 H N N 244 MSE HG2 H N N 245 MSE HG3 H N N 246 MSE HE1 H N N 247 MSE HE2 H N N 248 MSE HE3 H N N 249 NH4 N N N N 250 NH4 HN1 H N N 251 NH4 HN2 H N N 252 NH4 HN3 H N N 253 NH4 HN4 H N N 254 PHE N N N N 255 PHE CA C N S 256 PHE C C N N 257 PHE O O N N 258 PHE CB C N N 259 PHE CG C Y N 260 PHE CD1 C Y N 261 PHE CD2 C Y N 262 PHE CE1 C Y N 263 PHE CE2 C Y N 264 PHE CZ C Y N 265 PHE OXT O N N 266 PHE H H N N 267 PHE H2 H N N 268 PHE HA H N N 269 PHE HB2 H N N 270 PHE HB3 H N N 271 PHE HD1 H N N 272 PHE HD2 H N N 273 PHE HE1 H N N 274 PHE HE2 H N N 275 PHE HZ H N N 276 PHE HXT H N N 277 PRO N N N N 278 PRO CA C N S 279 PRO C C N N 280 PRO O O N N 281 PRO CB C N N 282 PRO CG C N N 283 PRO CD C N N 284 PRO OXT O N N 285 PRO H H N N 286 PRO HA H N N 287 PRO HB2 H N N 288 PRO HB3 H N N 289 PRO HG2 H N N 290 PRO HG3 H N N 291 PRO HD2 H N N 292 PRO HD3 H N N 293 PRO HXT H N N 294 SER N N N N 295 SER CA C N S 296 SER C C N N 297 SER O O N N 298 SER CB C N N 299 SER OG O N N 300 SER OXT O N N 301 SER H H N N 302 SER H2 H N N 303 SER HA H N N 304 SER HB2 H N N 305 SER HB3 H N N 306 SER HG H N N 307 SER HXT H N N 308 SO4 S S N N 309 SO4 O1 O N N 310 SO4 O2 O N N 311 SO4 O3 O N N 312 SO4 O4 O N N 313 THR N N N N 314 THR CA C N S 315 THR C C N N 316 THR O O N N 317 THR CB C N R 318 THR OG1 O N N 319 THR CG2 C N N 320 THR OXT O N N 321 THR H H N N 322 THR H2 H N N 323 THR HA H N N 324 THR HB H N N 325 THR HG1 H N N 326 THR HG21 H N N 327 THR HG22 H N N 328 THR HG23 H N N 329 THR HXT H N N 330 TRP N N N N 331 TRP CA C N S 332 TRP C C N N 333 TRP O O N N 334 TRP CB C N N 335 TRP CG C Y N 336 TRP CD1 C Y N 337 TRP CD2 C Y N 338 TRP NE1 N Y N 339 TRP CE2 C Y N 340 TRP CE3 C Y N 341 TRP CZ2 C Y N 342 TRP CZ3 C Y N 343 TRP CH2 C Y N 344 TRP OXT O N N 345 TRP H H N N 346 TRP H2 H N N 347 TRP HA H N N 348 TRP HB2 H N N 349 TRP HB3 H N N 350 TRP HD1 H N N 351 TRP HE1 H N N 352 TRP HE3 H N N 353 TRP HZ2 H N N 354 TRP HZ3 H N N 355 TRP HH2 H N N 356 TRP HXT H N N 357 TYR N N N N 358 TYR CA C N S 359 TYR C C N N 360 TYR O O N N 361 TYR CB C N N 362 TYR CG C Y N 363 TYR CD1 C Y N 364 TYR CD2 C Y N 365 TYR CE1 C Y N 366 TYR CE2 C Y N 367 TYR CZ C Y N 368 TYR OH O N N 369 TYR OXT O N N 370 TYR H H N N 371 TYR H2 H N N 372 TYR HA H N N 373 TYR HB2 H N N 374 TYR HB3 H N N 375 TYR HD1 H N N 376 TYR HD2 H N N 377 TYR HE1 H N N 378 TYR HE2 H N N 379 TYR HH H N N 380 TYR HXT H N N 381 VAL N N N N 382 VAL CA C N S 383 VAL C C N N 384 VAL O O N N 385 VAL CB C N N 386 VAL CG1 C N N 387 VAL CG2 C N N 388 VAL OXT O N N 389 VAL H H N N 390 VAL H2 H N N 391 VAL HA H N N 392 VAL HB H N N 393 VAL HG11 H N N 394 VAL HG12 H N N 395 VAL HG13 H N N 396 VAL HG21 H N N 397 VAL HG22 H N N 398 VAL HG23 H N N 399 VAL HXT H N N 400 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MSE N CA sing N N 218 MSE N H sing N N 219 MSE N H2 sing N N 220 MSE CA C sing N N 221 MSE CA CB sing N N 222 MSE CA HA sing N N 223 MSE C O doub N N 224 MSE C OXT sing N N 225 MSE OXT HXT sing N N 226 MSE CB CG sing N N 227 MSE CB HB2 sing N N 228 MSE CB HB3 sing N N 229 MSE CG SE sing N N 230 MSE CG HG2 sing N N 231 MSE CG HG3 sing N N 232 MSE SE CE sing N N 233 MSE CE HE1 sing N N 234 MSE CE HE2 sing N N 235 MSE CE HE3 sing N N 236 NH4 N HN1 sing N N 237 NH4 N HN2 sing N N 238 NH4 N HN3 sing N N 239 NH4 N HN4 sing N N 240 PHE N CA sing N N 241 PHE N H sing N N 242 PHE N H2 sing N N 243 PHE CA C sing N N 244 PHE CA CB sing N N 245 PHE CA HA sing N N 246 PHE C O doub N N 247 PHE C OXT sing N N 248 PHE CB CG sing N N 249 PHE CB HB2 sing N N 250 PHE CB HB3 sing N N 251 PHE CG CD1 doub Y N 252 PHE CG CD2 sing Y N 253 PHE CD1 CE1 sing Y N 254 PHE CD1 HD1 sing N N 255 PHE CD2 CE2 doub Y N 256 PHE CD2 HD2 sing N N 257 PHE CE1 CZ doub Y N 258 PHE CE1 HE1 sing N N 259 PHE CE2 CZ sing Y N 260 PHE CE2 HE2 sing N N 261 PHE CZ HZ sing N N 262 PHE OXT HXT sing N N 263 PRO N CA sing N N 264 PRO N CD sing N N 265 PRO N H sing N N 266 PRO CA C sing N N 267 PRO CA CB sing N N 268 PRO CA HA sing N N 269 PRO C O doub N N 270 PRO C OXT sing N N 271 PRO CB CG sing N N 272 PRO CB HB2 sing N N 273 PRO CB HB3 sing N N 274 PRO CG CD sing N N 275 PRO CG HG2 sing N N 276 PRO CG HG3 sing N N 277 PRO CD HD2 sing N N 278 PRO CD HD3 sing N N 279 PRO OXT HXT sing N N 280 SER N CA sing N N 281 SER N H sing N N 282 SER N H2 sing N N 283 SER CA C sing N N 284 SER CA CB sing N N 285 SER CA HA sing N N 286 SER C O doub N N 287 SER C OXT sing N N 288 SER CB OG sing N N 289 SER CB HB2 sing N N 290 SER CB HB3 sing N N 291 SER OG HG sing N N 292 SER OXT HXT sing N N 293 SO4 S O1 doub N N 294 SO4 S O2 doub N N 295 SO4 S O3 sing N N 296 SO4 S O4 sing N N 297 THR N CA sing N N 298 THR N H sing N N 299 THR N H2 sing N N 300 THR CA C sing N N 301 THR CA CB sing N N 302 THR CA HA sing N N 303 THR C O doub N N 304 THR C OXT sing N N 305 THR CB OG1 sing N N 306 THR CB CG2 sing N N 307 THR CB HB sing N N 308 THR OG1 HG1 sing N N 309 THR CG2 HG21 sing N N 310 THR CG2 HG22 sing N N 311 THR CG2 HG23 sing N N 312 THR OXT HXT sing N N 313 TRP N CA sing N N 314 TRP N H sing N N 315 TRP N H2 sing N N 316 TRP CA C sing N N 317 TRP CA CB sing N N 318 TRP CA HA sing N N 319 TRP C O doub N N 320 TRP C OXT sing N N 321 TRP CB CG sing N N 322 TRP CB HB2 sing N N 323 TRP CB HB3 sing N N 324 TRP CG CD1 doub Y N 325 TRP CG CD2 sing Y N 326 TRP CD1 NE1 sing Y N 327 TRP CD1 HD1 sing N N 328 TRP CD2 CE2 doub Y N 329 TRP CD2 CE3 sing Y N 330 TRP NE1 CE2 sing Y N 331 TRP NE1 HE1 sing N N 332 TRP CE2 CZ2 sing Y N 333 TRP CE3 CZ3 doub Y N 334 TRP CE3 HE3 sing N N 335 TRP CZ2 CH2 doub Y N 336 TRP CZ2 HZ2 sing N N 337 TRP CZ3 CH2 sing Y N 338 TRP CZ3 HZ3 sing N N 339 TRP CH2 HH2 sing N N 340 TRP OXT HXT sing N N 341 TYR N CA sing N N 342 TYR N H sing N N 343 TYR N H2 sing N N 344 TYR CA C sing N N 345 TYR CA CB sing N N 346 TYR CA HA sing N N 347 TYR C O doub N N 348 TYR C OXT sing N N 349 TYR CB CG sing N N 350 TYR CB HB2 sing N N 351 TYR CB HB3 sing N N 352 TYR CG CD1 doub Y N 353 TYR CG CD2 sing Y N 354 TYR CD1 CE1 sing Y N 355 TYR CD1 HD1 sing N N 356 TYR CD2 CE2 doub Y N 357 TYR CD2 HD2 sing N N 358 TYR CE1 CZ doub Y N 359 TYR CE1 HE1 sing N N 360 TYR CE2 CZ sing Y N 361 TYR CE2 HE2 sing N N 362 TYR CZ OH sing N N 363 TYR OH HH sing N N 364 TYR OXT HXT sing N N 365 VAL N CA sing N N 366 VAL N H sing N N 367 VAL N H2 sing N N 368 VAL CA C sing N N 369 VAL CA CB sing N N 370 VAL CA HA sing N N 371 VAL C O doub N N 372 VAL C OXT sing N N 373 VAL CB CG1 sing N N 374 VAL CB CG2 sing N N 375 VAL CB HB sing N N 376 VAL CG1 HG11 sing N N 377 VAL CG1 HG12 sing N N 378 VAL CG1 HG13 sing N N 379 VAL CG2 HG21 sing N N 380 VAL CG2 HG22 sing N N 381 VAL CG2 HG23 sing N N 382 VAL OXT HXT sing N N 383 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3D9J _pdbx_initial_refinement_model.details 'Pdb entry 3D9J' # _atom_sites.entry_id 3D9O _atom_sites.fract_transf_matrix[1][1] 0.017408 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017408 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009287 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_