HEADER LYASE 28-MAY-08 3DA2 TITLE X-RAY STRUCTURE OF HUMAN CARBONIC ANHYDRASE 13 IN COMPLEX WITH TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 13; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CARBONIC ANHYDRASE XIII, CARBONATE DEHYDRATASE XIII, CA- COMPND 5 XIII; COMPND 6 EC: 4.2.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: CA13; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS CARBONIC ANHYDRASE, SULFONAMIDE, SGC, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, LYASE, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR E.S.PILKA,S.S.PICAUD,W.W.YUE,O.N.F.KING,J.E.BRAY,P.FILIPPAKOPOULOS, AUTHOR 2 A.K.ROOS,A.C.W.PIKE,F.VON DELFT,C.H.ARROWSMITH,M.WIKSTROM, AUTHOR 3 A.M.EDWARDS,C.BOUNTRA,U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (SGC) REVDAT 5 30-AUG-23 3DA2 1 REMARK SEQADV LINK REVDAT 4 25-OCT-17 3DA2 1 REMARK REVDAT 3 13-JUL-11 3DA2 1 VERSN REVDAT 2 24-FEB-09 3DA2 1 VERSN REVDAT 1 15-JUL-08 3DA2 0 JRNL AUTH E.S.PILKA,S.S.PICAUD,W.W.YUE,O.N.F.KING,J.E.BRAY, JRNL AUTH 2 P.FILIPPAKOPOULOS,A.K.ROOS,A.C.W.PIKE,F.VON DELFT, JRNL AUTH 3 C.H.ARROWSMITH,M.WIKSTROM,A.M.EDWARDS,C.BOUNTRA,U.OPPERMANN JRNL TITL X-RAY STRUCTURE OF HUMAN CARBONIC ANHYDRASE 13 IN COMPLEX JRNL TITL 2 WITH INHIBITOR. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1734 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2359 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4063 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 435 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.160 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4267 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2840 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5834 ; 1.523 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6912 ; 0.918 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 525 ;14.167 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;29.481 ;24.149 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 654 ;13.488 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.502 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 628 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4778 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 846 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2621 ; 2.176 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1042 ; 0.628 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4247 ; 3.411 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1646 ; 5.499 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1587 ; 7.239 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 6 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6740 30.8910 13.7670 REMARK 3 T TENSOR REMARK 3 T11: 0.4662 T22: 0.2214 REMARK 3 T33: 0.3492 T12: 0.1191 REMARK 3 T13: 0.0256 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 18.6081 L22: 7.9689 REMARK 3 L33: 1.0181 L12: 3.9647 REMARK 3 L13: -4.0828 L23: 0.0636 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: -0.4526 S13: 0.5128 REMARK 3 S21: 0.0732 S22: -0.1866 S23: 0.3975 REMARK 3 S31: -1.2646 S32: -0.1375 S33: 0.1451 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6720 10.9410 16.2480 REMARK 3 T TENSOR REMARK 3 T11: 0.0181 T22: 0.0508 REMARK 3 T33: -0.0306 T12: -0.0465 REMARK 3 T13: -0.0327 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 3.8443 L22: 1.9168 REMARK 3 L33: 2.5560 L12: -0.1638 REMARK 3 L13: -0.2163 L23: -0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.1093 S12: 0.1659 S13: -0.1741 REMARK 3 S21: 0.0400 S22: -0.2882 S23: -0.0267 REMARK 3 S31: 0.0299 S32: -0.1025 S33: 0.1788 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7570 11.3970 21.4280 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: 0.1799 REMARK 3 T33: 0.0030 T12: -0.0635 REMARK 3 T13: 0.0261 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 3.0672 L22: 1.3056 REMARK 3 L33: 3.3144 L12: -0.6292 REMARK 3 L13: -0.0557 L23: -0.0062 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: -0.0040 S13: -0.1774 REMARK 3 S21: 0.2409 S22: -0.1459 S23: 0.2642 REMARK 3 S31: 0.0435 S32: -0.6714 S33: 0.1291 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1550 9.2300 14.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.0217 T22: 0.1297 REMARK 3 T33: -0.0212 T12: -0.0405 REMARK 3 T13: 0.0071 T23: -0.0601 REMARK 3 L TENSOR REMARK 3 L11: 3.8271 L22: 1.8905 REMARK 3 L33: 2.7166 L12: -0.5577 REMARK 3 L13: -0.1010 L23: 0.2021 REMARK 3 S TENSOR REMARK 3 S11: 0.1153 S12: 0.3215 S13: -0.2702 REMARK 3 S21: 0.0887 S22: -0.2439 S23: 0.2081 REMARK 3 S31: 0.1058 S32: -0.4317 S33: 0.1287 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 45 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8520 -20.1360 19.6390 REMARK 3 T TENSOR REMARK 3 T11: 0.1187 T22: 0.0538 REMARK 3 T33: 0.0333 T12: -0.0406 REMARK 3 T13: -0.0155 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 2.5074 L22: 2.4529 REMARK 3 L33: 2.6110 L12: 0.6620 REMARK 3 L13: 0.0004 L23: -0.3772 REMARK 3 S TENSOR REMARK 3 S11: -0.0635 S12: -0.2553 S13: -0.4538 REMARK 3 S21: 0.1386 S22: 0.1519 S23: -0.0114 REMARK 3 S31: 0.4568 S32: -0.0983 S33: -0.0884 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 46 B 155 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6900 -4.5550 14.9510 REMARK 3 T TENSOR REMARK 3 T11: 0.0474 T22: 0.0391 REMARK 3 T33: -0.0037 T12: -0.0365 REMARK 3 T13: 0.0250 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.9185 L22: 2.9345 REMARK 3 L33: 2.2103 L12: 0.0695 REMARK 3 L13: 0.0885 L23: -0.5462 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: -0.0209 S13: 0.1681 REMARK 3 S21: -0.0463 S22: 0.2301 S23: 0.0369 REMARK 3 S31: -0.1706 S32: -0.0624 S33: -0.1619 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 156 B 180 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0460 5.6600 27.6840 REMARK 3 T TENSOR REMARK 3 T11: 0.3605 T22: 0.1521 REMARK 3 T33: 0.0580 T12: 0.1129 REMARK 3 T13: 0.0483 T23: -0.0625 REMARK 3 L TENSOR REMARK 3 L11: 3.6479 L22: 2.9722 REMARK 3 L33: 1.4562 L12: -2.2877 REMARK 3 L13: 1.5165 L23: -1.1897 REMARK 3 S TENSOR REMARK 3 S11: -0.2925 S12: -0.1760 S13: 0.4024 REMARK 3 S21: 0.7678 S22: 0.3106 S23: 0.0363 REMARK 3 S31: -0.7645 S32: -0.2812 S33: -0.0180 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 181 B 261 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4480 -9.1440 20.9300 REMARK 3 T TENSOR REMARK 3 T11: 0.0460 T22: 0.0323 REMARK 3 T33: -0.0272 T12: -0.0032 REMARK 3 T13: 0.0000 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.0489 L22: 2.5676 REMARK 3 L33: 2.6097 L12: 0.2621 REMARK 3 L13: 0.2870 L23: -0.3758 REMARK 3 S TENSOR REMARK 3 S11: -0.0814 S12: -0.1764 S13: 0.0223 REMARK 3 S21: 0.1646 S22: 0.1604 S23: -0.0946 REMARK 3 S31: -0.0790 S32: -0.0061 S33: -0.0789 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DA2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 43.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62100 REMARK 200 R SYM FOR SHELL (I) : 0.37200 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1AZM,1ZH9,1FLJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M (NH4)2H(CITRATE), REMARK 280 PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.81850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.56900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.81850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.56900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ARG B 3 REMARK 465 LEU B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 NE CZ NH1 NH2 REMARK 470 LYS A 18 NZ REMARK 470 LYS A 40 CE NZ REMARK 470 ARG A 46 NE CZ NH1 NH2 REMARK 470 LYS A 77 CE NZ REMARK 470 GLN A 159 CG CD OE1 NE2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 LYS B 18 NZ REMARK 470 PHE B 20 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 37 CD CE NZ REMARK 470 LYS B 40 CD CE NZ REMARK 470 ARG B 46 NE CZ NH1 NH2 REMARK 470 LYS B 77 CE NZ REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 LYS B 173 CD CE NZ REMARK 470 LYS B 214 CE NZ REMARK 470 GLN B 222 CD OE1 NE2 REMARK 470 GLU B 237 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 46 O HOH B 701 2.02 REMARK 500 O HOH A 505 O HOH B 685 2.03 REMARK 500 O HOH A 430 O HOH A 523 2.08 REMARK 500 ND2 ASN B 179 O HOH B 577 2.12 REMARK 500 O ASP B 181 O HOH B 697 2.14 REMARK 500 CD2 LEU A 48 O HOH A 588 2.15 REMARK 500 O HOH B 608 O HOH B 665 2.16 REMARK 500 OG SER B 63 O HOH B 612 2.17 REMARK 500 O HOH A 405 O HOH A 571 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 5 42.56 -103.81 REMARK 500 ASN A 76 40.28 -98.76 REMARK 500 LEU A 204 27.08 87.96 REMARK 500 ASN A 245 47.46 -149.72 REMARK 500 LYS B 58 -38.97 -131.97 REMARK 500 ARG B 92 -50.66 -126.86 REMARK 500 HIS B 104 68.68 -152.59 REMARK 500 LEU B 204 24.13 80.41 REMARK 500 ASN B 245 42.62 -143.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 203 LEU A 204 136.51 REMARK 500 PRO B 31 ILE B 32 143.83 REMARK 500 PRO B 203 LEU B 204 140.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 97 NE2 REMARK 620 2 HIS A 120 ND1 98.2 REMARK 620 3 4MD A 401 S1B 138.6 98.8 REMARK 620 4 4MD A 401 N1K 116.5 117.5 24.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 4MD B 401 S1B REMARK 620 2 4MD B 401 N1K 37.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4MD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4MD B 401 DBREF 3DA2 A 1 261 UNP Q8N1Q1 CAH13_HUMAN 1 261 DBREF 3DA2 B 1 261 UNP Q8N1Q1 CAH13_HUMAN 1 261 SEQADV 3DA2 SER A 0 UNP Q8N1Q1 EXPRESSION TAG SEQADV 3DA2 SER B 0 UNP Q8N1Q1 EXPRESSION TAG SEQRES 1 A 262 SER MET SER ARG LEU SER TRP GLY TYR ARG GLU HIS ASN SEQRES 2 A 262 GLY PRO ILE HIS TRP LYS GLU PHE PHE PRO ILE ALA ASP SEQRES 3 A 262 GLY ASP GLN GLN SER PRO ILE GLU ILE LYS THR LYS GLU SEQRES 4 A 262 VAL LYS TYR ASP SER SER LEU ARG PRO LEU SER ILE LYS SEQRES 5 A 262 TYR ASP PRO SER SER ALA LYS ILE ILE SER ASN SER GLY SEQRES 6 A 262 HIS SER PHE ASN VAL ASP PHE ASP ASP THR GLU ASN LYS SEQRES 7 A 262 SER VAL LEU ARG GLY GLY PRO LEU THR GLY SER TYR ARG SEQRES 8 A 262 LEU ARG GLN VAL HIS LEU HIS TRP GLY SER ALA ASP ASP SEQRES 9 A 262 HIS GLY SER GLU HIS ILE VAL ASP GLY VAL SER TYR ALA SEQRES 10 A 262 ALA GLU LEU HIS VAL VAL HIS TRP ASN SER ASP LYS TYR SEQRES 11 A 262 PRO SER PHE VAL GLU ALA ALA HIS GLU PRO ASP GLY LEU SEQRES 12 A 262 ALA VAL LEU GLY VAL PHE LEU GLN ILE GLY GLU PRO ASN SEQRES 13 A 262 SER GLN LEU GLN LYS ILE THR ASP THR LEU ASP SER ILE SEQRES 14 A 262 LYS GLU LYS GLY LYS GLN THR ARG PHE THR ASN PHE ASP SEQRES 15 A 262 LEU LEU SER LEU LEU PRO PRO SER TRP ASP TYR TRP THR SEQRES 16 A 262 TYR PRO GLY SER LEU THR VAL PRO PRO LEU LEU GLU SER SEQRES 17 A 262 VAL THR TRP ILE VAL LEU LYS GLN PRO ILE ASN ILE SER SEQRES 18 A 262 SER GLN GLN LEU ALA LYS PHE ARG SER LEU LEU CYS THR SEQRES 19 A 262 ALA GLU GLY GLU ALA ALA ALA PHE LEU VAL SER ASN HIS SEQRES 20 A 262 ARG PRO PRO GLN PRO LEU LYS GLY ARG LYS VAL ARG ALA SEQRES 21 A 262 SER PHE SEQRES 1 B 262 SER MET SER ARG LEU SER TRP GLY TYR ARG GLU HIS ASN SEQRES 2 B 262 GLY PRO ILE HIS TRP LYS GLU PHE PHE PRO ILE ALA ASP SEQRES 3 B 262 GLY ASP GLN GLN SER PRO ILE GLU ILE LYS THR LYS GLU SEQRES 4 B 262 VAL LYS TYR ASP SER SER LEU ARG PRO LEU SER ILE LYS SEQRES 5 B 262 TYR ASP PRO SER SER ALA LYS ILE ILE SER ASN SER GLY SEQRES 6 B 262 HIS SER PHE ASN VAL ASP PHE ASP ASP THR GLU ASN LYS SEQRES 7 B 262 SER VAL LEU ARG GLY GLY PRO LEU THR GLY SER TYR ARG SEQRES 8 B 262 LEU ARG GLN VAL HIS LEU HIS TRP GLY SER ALA ASP ASP SEQRES 9 B 262 HIS GLY SER GLU HIS ILE VAL ASP GLY VAL SER TYR ALA SEQRES 10 B 262 ALA GLU LEU HIS VAL VAL HIS TRP ASN SER ASP LYS TYR SEQRES 11 B 262 PRO SER PHE VAL GLU ALA ALA HIS GLU PRO ASP GLY LEU SEQRES 12 B 262 ALA VAL LEU GLY VAL PHE LEU GLN ILE GLY GLU PRO ASN SEQRES 13 B 262 SER GLN LEU GLN LYS ILE THR ASP THR LEU ASP SER ILE SEQRES 14 B 262 LYS GLU LYS GLY LYS GLN THR ARG PHE THR ASN PHE ASP SEQRES 15 B 262 LEU LEU SER LEU LEU PRO PRO SER TRP ASP TYR TRP THR SEQRES 16 B 262 TYR PRO GLY SER LEU THR VAL PRO PRO LEU LEU GLU SER SEQRES 17 B 262 VAL THR TRP ILE VAL LEU LYS GLN PRO ILE ASN ILE SER SEQRES 18 B 262 SER GLN GLN LEU ALA LYS PHE ARG SER LEU LEU CYS THR SEQRES 19 B 262 ALA GLU GLY GLU ALA ALA ALA PHE LEU VAL SER ASN HIS SEQRES 20 B 262 ARG PRO PRO GLN PRO LEU LYS GLY ARG LYS VAL ARG ALA SEQRES 21 B 262 SER PHE HET ZN A 301 1 HET 4MD A 401 23 HET ZN B 301 1 HET CL B 302 1 HET CL B 303 1 HET 4MD B 401 23 HETNAM ZN ZINC ION HETNAM 4MD N-(4-CHLOROBENZYL)-N-METHYLBENZENE-1,4-DISULFONAMIDE HETNAM CL CHLORIDE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 4MD 2(C14 H15 CL N2 O4 S2) FORMUL 6 CL 2(CL 1-) FORMUL 9 HOH *435(H2 O) HELIX 1 1 GLY A 13 LYS A 18 1 6 HELIX 2 2 GLU A 19 PHE A 20 5 2 HELIX 3 3 PHE A 21 GLY A 26 5 6 HELIX 4 4 LYS A 35 VAL A 39 5 5 HELIX 5 5 ASP A 53 SER A 55 5 3 HELIX 6 6 SER A 131 ALA A 136 1 6 HELIX 7 7 LEU A 158 ASP A 163 1 6 HELIX 8 8 ASP A 181 LEU A 186 1 6 HELIX 9 9 SER A 220 SER A 229 1 10 HELIX 10 10 GLY B 13 PHE B 20 5 8 HELIX 11 11 PHE B 21 GLY B 26 5 6 HELIX 12 12 LYS B 35 VAL B 39 5 5 HELIX 13 13 ASP B 53 SER B 55 5 3 HELIX 14 14 SER B 131 HIS B 137 1 7 HELIX 15 15 GLN B 157 ASP B 163 1 7 HELIX 16 16 THR B 164 LYS B 169 5 6 HELIX 17 17 ASP B 181 LEU B 186 5 6 HELIX 18 18 SER B 220 ARG B 228 1 9 SHEET 1 A 2 GLU A 33 ILE A 34 0 SHEET 2 A 2 ILE A 109 VAL A 110 1 O ILE A 109 N ILE A 34 SHEET 1 B10 LYS A 40 TYR A 41 0 SHEET 2 B10 ARG A 258 ALA A 259 1 O ALA A 259 N LYS A 40 SHEET 3 B10 TYR A 192 GLY A 197 -1 N THR A 194 O ARG A 258 SHEET 4 B10 VAL A 208 LEU A 213 -1 O VAL A 208 N GLY A 197 SHEET 5 B10 LEU A 142 ILE A 151 1 N GLY A 146 O LEU A 213 SHEET 6 B10 ALA A 117 ASN A 125 -1 N LEU A 119 O VAL A 147 SHEET 7 B10 TYR A 89 TRP A 98 -1 N GLN A 93 O VAL A 122 SHEET 8 B10 PHE A 67 PHE A 71 -1 N PHE A 71 O ARG A 92 SHEET 9 B10 ALA A 57 ASN A 62 -1 N LYS A 58 O ASP A 70 SHEET 10 B10 GLN A 174 ARG A 176 -1 O THR A 175 N ILE A 60 SHEET 1 C 6 LEU A 48 LYS A 51 0 SHEET 2 C 6 VAL A 79 GLY A 82 -1 O ARG A 81 N SER A 49 SHEET 3 C 6 TYR A 89 TRP A 98 -1 O TYR A 89 N LEU A 80 SHEET 4 C 6 ALA A 117 ASN A 125 -1 O VAL A 122 N GLN A 93 SHEET 5 C 6 LEU A 142 ILE A 151 -1 O VAL A 147 N LEU A 119 SHEET 6 C 6 ILE A 217 ILE A 219 1 O ILE A 217 N GLN A 150 SHEET 1 D 2 GLU B 33 ILE B 34 0 SHEET 2 D 2 ILE B 109 VAL B 110 1 O ILE B 109 N ILE B 34 SHEET 1 E10 LYS B 40 TYR B 41 0 SHEET 2 E10 ARG B 258 ALA B 259 1 O ALA B 259 N LYS B 40 SHEET 3 E10 TYR B 192 GLY B 197 -1 N THR B 194 O ARG B 258 SHEET 4 E10 VAL B 208 LEU B 213 -1 O VAL B 208 N GLY B 197 SHEET 5 E10 LEU B 142 ILE B 151 1 N GLY B 146 O ILE B 211 SHEET 6 E10 ALA B 117 ASN B 125 -1 N LEU B 119 O VAL B 147 SHEET 7 E10 TYR B 89 TRP B 98 -1 N GLN B 93 O VAL B 122 SHEET 8 E10 PHE B 67 PHE B 71 -1 N PHE B 71 O ARG B 92 SHEET 9 E10 ALA B 57 ASN B 62 -1 N ILE B 59 O ASP B 70 SHEET 10 E10 GLN B 174 ARG B 176 -1 O THR B 175 N ILE B 60 SHEET 1 F 6 LEU B 48 LYS B 51 0 SHEET 2 F 6 VAL B 79 GLY B 82 -1 O ARG B 81 N SER B 49 SHEET 3 F 6 TYR B 89 TRP B 98 -1 O TYR B 89 N LEU B 80 SHEET 4 F 6 ALA B 117 ASN B 125 -1 O VAL B 122 N GLN B 93 SHEET 5 F 6 LEU B 142 ILE B 151 -1 O VAL B 147 N LEU B 119 SHEET 6 F 6 ILE B 217 ILE B 219 1 O ILE B 217 N GLN B 150 LINK NE2 HIS A 97 ZN ZN A 301 1555 1555 2.36 LINK ND1 HIS A 120 ZN ZN A 301 1555 1555 2.18 LINK ZN ZN A 301 S1B 4MD A 401 1555 1555 2.83 LINK ZN ZN A 301 N1K 4MD A 401 1555 1555 1.43 LINK ZN ZN B 301 S1B 4MD B 401 1555 1555 2.58 LINK ZN ZN B 301 N1K 4MD B 401 1555 1555 1.53 CISPEP 1 SER A 30 PRO A 31 0 0.45 CISPEP 2 PRO A 202 PRO A 203 0 6.90 CISPEP 3 SER B 30 PRO B 31 0 2.70 CISPEP 4 PRO B 202 PRO B 203 0 13.88 SITE 1 AC1 3 HIS A 95 HIS A 97 HIS A 120 SITE 1 AC2 3 HIS B 95 HIS B 97 HIS B 120 SITE 1 AC3 1 ARG B 90 SITE 1 AC4 2 ALA B 259 PHE B 261 SITE 1 AC5 9 GLN A 93 HIS A 95 HIS A 97 HIS A 120 SITE 2 AC5 9 PHE A 132 ALA A 136 HIS A 137 LEU A 199 SITE 3 AC5 9 THR A 200 SITE 1 AC6 11 GLN B 93 HIS B 95 HIS B 97 HIS B 120 SITE 2 AC6 11 PHE B 132 ALA B 136 HIS B 137 LEU B 199 SITE 3 AC6 11 THR B 200 PRO B 203 TRP B 210 CRYST1 153.637 45.138 87.938 90.00 116.28 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006509 0.000000 0.003214 0.00000 SCALE2 0.000000 0.022155 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012682 0.00000