HEADER HYDROLASE 29-MAY-08 3DAO TITLE CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHATE (EUBREC_1417) FROM TITLE 2 EUBACTERIUM RECTALE AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHATE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EUBACTERIUM RECTALE; SOURCE 3 GENE: RER070207001050; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE PHOSPHATE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 24-JUL-19 3DAO 1 REMARK DBREF LINK REVDAT 4 25-OCT-17 3DAO 1 REMARK REVDAT 3 28-JUL-10 3DAO 1 TITLE KEYWDS REVDAT 2 24-FEB-09 3DAO 1 VERSN REVDAT 1 29-JUL-08 3DAO 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHATASE JRNL TITL 2 (RER070207001050) FROM EUBACTERIUM RECTALE AT 1.80 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2772 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3800 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4254 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.340 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4566 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3093 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6231 ; 1.739 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7581 ; 1.519 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 591 ; 4.605 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 211 ;32.396 ;24.360 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 779 ;11.437 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.327 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 687 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5136 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 938 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2784 ; 1.375 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1117 ; 0.296 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4535 ; 2.439 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1782 ; 4.089 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1671 ; 5.898 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. CITRATE (CIT) AND PEG-4000 (1PE) MOLECULES FROM THE REMARK 3 CRYSTALLIZATION/CRYO REMARK 3 SOLUTIONS ARE MODELED. REMARK 4 REMARK 4 3DAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047802. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915,0.97929,0.91162 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54677 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.934 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55800 REMARK 200 R SYM FOR SHELL (I) : 0.55800 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NH4OAC, 30.0000% PEG-4000, REMARK 280 0.1M CITRATE PH 5., NANODROP, PH 5.6, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.49700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.92750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.92750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.74850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.92750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.92750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.24550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.92750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.92750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.74850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.92750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.92750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.24550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.49700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 35 CD CE NZ REMARK 470 LYS A 75 CD CE NZ REMARK 470 LYS A 172 CE NZ REMARK 470 ASP A 209 CG OD1 OD2 REMARK 470 LYS B 52 CD CE NZ REMARK 470 ARG B 126 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 141 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 217 O HOH B 482 2.04 REMARK 500 OE2 GLU B 115 O ASP B 137 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 8 CB - CG - OD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 GLU B 210 C - N - CA ANGL. DEV. = -18.2 DEGREES REMARK 500 GLU B 210 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 81 73.34 -119.49 REMARK 500 ASP A 156 -2.33 -154.85 REMARK 500 LYS A 157 47.67 -148.78 REMARK 500 VAL A 165 -49.58 -133.22 REMARK 500 ASP B 156 -4.47 -150.87 REMARK 500 PRO B 208 -22.37 -34.27 REMARK 500 ASP B 216 -16.67 -141.23 REMARK 500 ASP B 216 -14.80 -142.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN B -1 -11.20 REMARK 500 GLN B -1 12.41 REMARK 500 LEU B 207 -18.11 REMARK 500 LEU B 207 15.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 265 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 388491 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 3DAO A -18 264 PDB 3DAO 3DAO -18 264 DBREF 3DAO B -18 264 PDB 3DAO 3DAO -18 264 SEQRES 1 A 283 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 283 ASN LEU TYR PHE GLN GLY MSE ILE LYS LEU ILE ALA THR SEQRES 3 A 283 ASP ILE ASP GLY THR LEU VAL LYS ASP GLY SER LEU LEU SEQRES 4 A 283 ILE ASP PRO GLU TYR MSE SER VAL ILE ASP ARG LEU ILE SEQRES 5 A 283 ASP LYS GLY ILE ILE PHE VAL VAL CYS SER GLY ARG GLN SEQRES 6 A 283 PHE SER SER GLU PHE LYS LEU PHE ALA PRO ILE LYS HIS SEQRES 7 A 283 LYS LEU LEU TYR ILE THR ASP GLY GLY THR VAL VAL ARG SEQRES 8 A 283 THR PRO LYS GLU ILE LEU LYS THR TYR PRO MSE ASP GLU SEQRES 9 A 283 ASP ILE TRP LYS GLY MSE CYS ARG MSE VAL ARG ASP GLU SEQRES 10 A 283 LEU PRO ALA CYS ASP TYR PHE ALA ALA THR PRO ASP PHE SEQRES 11 A 283 CYS PHE ALA GLU ASP GLY GLY SER PRO ILE PHE HIS LEU SEQRES 12 A 283 LEU ARG ASP SER TYR GLY PHE GLU MSE ARG GLU VAL ASP SEQRES 13 A 283 ASP ILE THR ARG LEU ASP ARG ASN ASP ILE ILE LYS PHE SEQRES 14 A 283 THR VAL PHE HIS PRO ASP LYS CYS GLU GLU LEU CYS THR SEQRES 15 A 283 PRO VAL PHE ILE PRO ALA TRP ASN LYS LYS ALA HIS LEU SEQRES 16 A 283 ALA ALA ALA GLY LYS GLU TRP VAL ASP CYS ASN ALA LYS SEQRES 17 A 283 GLY VAL SER LYS TRP THR ALA LEU SER TYR LEU ILE ASP SEQRES 18 A 283 ARG PHE ASP LEU LEU PRO ASP GLU VAL CYS CYS PHE GLY SEQRES 19 A 283 ASP ASN LEU ASN ASP ILE GLU MSE LEU GLN ASN ALA GLY SEQRES 20 A 283 ILE SER TYR ALA VAL SER ASN ALA ARG GLN GLU VAL ILE SEQRES 21 A 283 ALA ALA ALA LYS HIS THR CYS ALA PRO TYR TRP GLU ASN SEQRES 22 A 283 GLY VAL LEU SER VAL LEU LYS SER PHE LEU SEQRES 1 B 283 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 283 ASN LEU TYR PHE GLN GLY MSE ILE LYS LEU ILE ALA THR SEQRES 3 B 283 ASP ILE ASP GLY THR LEU VAL LYS ASP GLY SER LEU LEU SEQRES 4 B 283 ILE ASP PRO GLU TYR MSE SER VAL ILE ASP ARG LEU ILE SEQRES 5 B 283 ASP LYS GLY ILE ILE PHE VAL VAL CYS SER GLY ARG GLN SEQRES 6 B 283 PHE SER SER GLU PHE LYS LEU PHE ALA PRO ILE LYS HIS SEQRES 7 B 283 LYS LEU LEU TYR ILE THR ASP GLY GLY THR VAL VAL ARG SEQRES 8 B 283 THR PRO LYS GLU ILE LEU LYS THR TYR PRO MSE ASP GLU SEQRES 9 B 283 ASP ILE TRP LYS GLY MSE CYS ARG MSE VAL ARG ASP GLU SEQRES 10 B 283 LEU PRO ALA CYS ASP TYR PHE ALA ALA THR PRO ASP PHE SEQRES 11 B 283 CYS PHE ALA GLU ASP GLY GLY SER PRO ILE PHE HIS LEU SEQRES 12 B 283 LEU ARG ASP SER TYR GLY PHE GLU MSE ARG GLU VAL ASP SEQRES 13 B 283 ASP ILE THR ARG LEU ASP ARG ASN ASP ILE ILE LYS PHE SEQRES 14 B 283 THR VAL PHE HIS PRO ASP LYS CYS GLU GLU LEU CYS THR SEQRES 15 B 283 PRO VAL PHE ILE PRO ALA TRP ASN LYS LYS ALA HIS LEU SEQRES 16 B 283 ALA ALA ALA GLY LYS GLU TRP VAL ASP CYS ASN ALA LYS SEQRES 17 B 283 GLY VAL SER LYS TRP THR ALA LEU SER TYR LEU ILE ASP SEQRES 18 B 283 ARG PHE ASP LEU LEU PRO ASP GLU VAL CYS CYS PHE GLY SEQRES 19 B 283 ASP ASN LEU ASN ASP ILE GLU MSE LEU GLN ASN ALA GLY SEQRES 20 B 283 ILE SER TYR ALA VAL SER ASN ALA ARG GLN GLU VAL ILE SEQRES 21 B 283 ALA ALA ALA LYS HIS THR CYS ALA PRO TYR TRP GLU ASN SEQRES 22 B 283 GLY VAL LEU SER VAL LEU LYS SER PHE LEU MODRES 3DAO MSE A 1 MET SELENOMETHIONINE MODRES 3DAO MSE A 26 MET SELENOMETHIONINE MODRES 3DAO MSE A 83 MET SELENOMETHIONINE MODRES 3DAO MSE A 91 MET SELENOMETHIONINE MODRES 3DAO MSE A 94 MET SELENOMETHIONINE MODRES 3DAO MSE A 133 MET SELENOMETHIONINE MODRES 3DAO MSE A 223 MET SELENOMETHIONINE MODRES 3DAO MSE B 1 MET SELENOMETHIONINE MODRES 3DAO MSE B 26 MET SELENOMETHIONINE MODRES 3DAO MSE B 83 MET SELENOMETHIONINE MODRES 3DAO MSE B 91 MET SELENOMETHIONINE MODRES 3DAO MSE B 94 MET SELENOMETHIONINE MODRES 3DAO MSE B 133 MET SELENOMETHIONINE MODRES 3DAO MSE B 223 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 26 8 HET MSE A 83 13 HET MSE A 91 8 HET MSE A 94 8 HET MSE A 133 8 HET MSE A 223 8 HET MSE B 1 16 HET MSE B 26 8 HET MSE B 83 13 HET MSE B 91 8 HET MSE B 94 8 HET MSE B 133 8 HET MSE B 223 8 HET 1PE A 265 16 HET CIT B 265 13 HETNAM MSE SELENOMETHIONINE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM CIT CITRIC ACID HETSYN 1PE PEG400 FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 1PE C10 H22 O6 FORMUL 4 CIT C6 H8 O7 FORMUL 5 HOH *680(H2 O) HELIX 1 1 ASP A 22 LYS A 35 1 14 HELIX 2 2 GLN A 46 PHE A 54 1 9 HELIX 3 3 ALA A 55 LEU A 61 5 7 HELIX 4 4 ASP A 84 LEU A 99 1 16 HELIX 5 5 SER A 119 SER A 128 1 10 HELIX 6 6 ASP A 138 LEU A 142 5 5 HELIX 7 7 LYS A 157 THR A 163 1 7 HELIX 8 8 VAL A 165 ASN A 171 1 7 HELIX 9 9 SER A 192 PHE A 204 1 13 HELIX 10 10 LEU A 207 ASP A 209 5 3 HELIX 11 11 ASN A 217 ASN A 219 5 3 HELIX 12 12 ASP A 220 ALA A 227 1 8 HELIX 13 13 ARG A 237 ALA A 244 1 8 HELIX 14 14 PRO A 250 GLU A 253 5 4 HELIX 15 15 ASN A 254 PHE A 263 1 10 HELIX 16 16 ASP B 22 LYS B 35 1 14 HELIX 17 17 GLN B 46 PHE B 54 1 9 HELIX 18 18 ALA B 55 LEU B 61 5 7 HELIX 19 19 ASP B 84 LEU B 99 1 16 HELIX 20 20 HIS B 123 SER B 128 1 6 HELIX 21 21 ASP B 138 LEU B 142 5 5 HELIX 22 22 LYS B 157 THR B 163 1 7 HELIX 23 23 VAL B 165 ASN B 171 1 7 HELIX 24 24 SER B 192 PHE B 204 1 13 HELIX 25 25 LEU B 207 ASP B 209 5 3 HELIX 26 26 ASN B 217 ASN B 219 5 3 HELIX 27 27 ASP B 220 ALA B 227 1 8 HELIX 28 28 ARG B 237 ALA B 244 1 8 HELIX 29 29 PRO B 250 GLU B 253 5 4 HELIX 30 30 ASN B 254 PHE B 263 1 10 SHEET 1 A 8 ILE A 77 THR A 80 0 SHEET 2 A 8 VAL A 70 ARG A 72 -1 N VAL A 71 O LEU A 78 SHEET 3 A 8 LEU A 62 THR A 65 -1 N TYR A 63 O ARG A 72 SHEET 4 A 8 ILE A 38 CYS A 42 1 N VAL A 41 O ILE A 64 SHEET 5 A 8 LEU A 4 THR A 7 1 N ILE A 5 O ILE A 38 SHEET 6 A 8 VAL A 211 GLY A 215 1 O CYS A 212 N LEU A 4 SHEET 7 A 8 ILE A 229 VAL A 233 1 O TYR A 231 N CYS A 213 SHEET 8 A 8 HIS A 246 CYS A 248 1 O CYS A 248 N ALA A 232 SHEET 1 B 6 MSE A 133 GLU A 135 0 SHEET 2 B 6 CYS A 112 ALA A 114 1 N CYS A 112 O ARG A 134 SHEET 3 B 6 ASP A 103 ALA A 107 -1 N ALA A 106 O PHE A 113 SHEET 4 B 6 LYS A 149 PHE A 153 -1 O LYS A 149 N ALA A 107 SHEET 5 B 6 TRP A 183 ALA A 188 -1 O VAL A 184 N VAL A 152 SHEET 6 B 6 ALA A 174 ALA A 179 -1 N ALA A 179 O TRP A 183 SHEET 1 C 8 ILE B 77 THR B 80 0 SHEET 2 C 8 VAL B 70 ARG B 72 -1 N VAL B 71 O LEU B 78 SHEET 3 C 8 LEU B 62 THR B 65 -1 N TYR B 63 O ARG B 72 SHEET 4 C 8 ILE B 38 CYS B 42 1 N VAL B 41 O ILE B 64 SHEET 5 C 8 LEU B 4 THR B 7 1 N THR B 7 O CYS B 42 SHEET 6 C 8 VAL B 211 GLY B 215 1 O CYS B 212 N ALA B 6 SHEET 7 C 8 ILE B 229 VAL B 233 1 O TYR B 231 N CYS B 213 SHEET 8 C 8 HIS B 246 CYS B 248 1 O HIS B 246 N ALA B 232 SHEET 1 D 6 MSE B 133 GLU B 135 0 SHEET 2 D 6 CYS B 112 ALA B 114 1 N CYS B 112 O ARG B 134 SHEET 3 D 6 ASP B 103 ALA B 107 -1 N ALA B 106 O PHE B 113 SHEET 4 D 6 LYS B 149 PHE B 153 -1 O THR B 151 N PHE B 105 SHEET 5 D 6 TRP B 183 ALA B 188 -1 O VAL B 184 N VAL B 152 SHEET 6 D 6 ALA B 174 ALA B 179 -1 N HIS B 175 O ASN B 187 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ILE A 2 1555 1555 1.32 LINK C TYR A 25 N MSE A 26 1555 1555 1.32 LINK C MSE A 26 N SER A 27 1555 1555 1.33 LINK C PRO A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N ASP A 84 1555 1555 1.32 LINK C GLY A 90 N MSE A 91 1555 1555 1.33 LINK C MSE A 91 N CYS A 92 1555 1555 1.32 LINK C ARG A 93 N MSE A 94 1555 1555 1.33 LINK C MSE A 94 N VAL A 95 1555 1555 1.33 LINK C GLU A 132 N MSE A 133 1555 1555 1.33 LINK C MSE A 133 N ARG A 134 1555 1555 1.34 LINK C GLU A 222 N MSE A 223 1555 1555 1.33 LINK C MSE A 223 N LEU A 224 1555 1555 1.33 LINK C AGLY B 0 N AMSE B 1 1555 1555 1.32 LINK C BGLY B 0 N BMSE B 1 1555 1555 1.33 LINK C AMSE B 1 N ILE B 2 1555 1555 1.33 LINK C BMSE B 1 N ILE B 2 1555 1555 1.36 LINK C TYR B 25 N MSE B 26 1555 1555 1.33 LINK C MSE B 26 N SER B 27 1555 1555 1.33 LINK C PRO B 82 N MSE B 83 1555 1555 1.32 LINK C MSE B 83 N ASP B 84 1555 1555 1.32 LINK C GLY B 90 N MSE B 91 1555 1555 1.32 LINK C MSE B 91 N CYS B 92 1555 1555 1.32 LINK C ARG B 93 N MSE B 94 1555 1555 1.32 LINK C MSE B 94 N VAL B 95 1555 1555 1.33 LINK C GLU B 132 N MSE B 133 1555 1555 1.31 LINK C MSE B 133 N ARG B 134 1555 1555 1.32 LINK C GLU B 222 N MSE B 223 1555 1555 1.33 LINK C MSE B 223 N LEU B 224 1555 1555 1.33 SITE 1 AC1 5 GLY A 44 GLN A 46 LEU A 125 LYS A 149 SITE 2 AC1 5 ASP A 185 SITE 1 AC2 8 ASP B 8 ILE B 9 ASP B 10 SER B 43 SITE 2 AC2 8 GLY B 44 LYS B 193 ASN B 217 ASN B 219 CRYST1 101.855 101.855 110.994 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009818 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009818 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009009 0.00000