HEADER OXIDOREDUCTASE 30-MAY-08 3DAS TITLE STRUCTURE OF THE PQQ-BOUND FORM OF ALDOSE SUGAR DEHYDROGENASE (ADH) TITLE 2 FROM STREPTOMYCES COELICOLOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE OXIDOREDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 104-447; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALDOSE SUGAR DEHYDROGENASE, BETA PROPELLOR, PQQ, SGDH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.SOUTHALL,J.J.DOEL,A.OUBRIE,D.J.RICHARDSON REVDAT 3 30-OCT-24 3DAS 1 HETSYN REVDAT 2 29-JUL-20 3DAS 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE REVDAT 1 02-JUN-09 3DAS 0 JRNL AUTH S.M.SOUTHALL,J.J.DOEL,A.OUBRIE,D.J.RICHARDSON JRNL TITL STRUCTURAL AND ENZYMATIC CHARACTERIZATION OF A THERMOSTABLE JRNL TITL 2 PQQ-DEPENDENT SOLUBLE ALDOSE SUGAR DEHYDROGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 41068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2249 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2229 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.1380 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.1800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2490 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 481 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.515 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2953 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4058 ; 1.280 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ; 6.036 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;35.280 ;24.044 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;10.634 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.794 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2357 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1356 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1952 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 437 ; 0.129 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.039 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.174 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1850 ; 0.646 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2915 ; 0.956 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1321 ; 1.434 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1097 ; 2.086 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3171 ; 0.816 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 492 ; 2.455 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2847 ; 1.442 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE AUTHORS STATE THAT IN REMARK 500, THE WATERS ARE REMARK 3 INDEED ALTERNATIVE CONFORMATIONS OF THE LIGANDS AND THEIR REMARK 3 OCCUPANCIES ARE CORRECTLY SET AT 0.5. REMARK 4 REMARK 4 3DAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43328 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 20% PEG 6000, 0.1M CALCIUM REMARK 280 CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.63000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 MSE A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 THR A 11 REMARK 465 GLU A 12 REMARK 465 GLN A 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 281 O HOH A 4734 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 33 53.48 34.65 REMARK 500 TRP A 35 -75.82 -138.40 REMARK 500 SER A 77 128.51 -171.04 REMARK 500 LEU A 83 -122.14 -109.69 REMARK 500 SER A 160 16.09 58.06 REMARK 500 ASN A 203 116.26 -160.87 REMARK 500 GLN A 222 -91.41 -81.74 REMARK 500 GLN A 222 -93.56 -79.46 REMARK 500 ALA A 263 -88.74 -134.65 REMARK 500 SER A 266 -107.67 -113.22 REMARK 500 LEU A 280 -81.87 -76.62 REMARK 500 SER A 326 42.18 -145.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 351 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 221 O REMARK 620 2 GLN A 222 O 76.1 REMARK 620 3 PQQ A4331 O7A 144.8 80.4 REMARK 620 4 PQQ A4331 N6 140.7 142.8 64.6 REMARK 620 5 PQQ A4331 O5 82.6 141.0 130.8 67.3 REMARK 620 6 HOH A4348 O 112.2 79.4 88.5 87.1 79.0 REMARK 620 7 HOH A4350 O 82.9 111.0 81.5 77.2 98.1 163.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 350 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 227 OE1 REMARK 620 2 GLU A 227 OE2 52.7 REMARK 620 3 TYR A 237 O 142.4 163.0 REMARK 620 4 HOH A4343 O 80.0 119.9 76.1 REMARK 620 5 HOH A4344 O 76.1 97.9 82.4 104.8 REMARK 620 6 HOH A4363 O 108.6 80.9 96.6 82.2 172.3 REMARK 620 7 HOH A4375 O 127.4 81.6 81.4 152.4 87.6 84.7 REMARK 620 N 1 2 3 4 5 6 DBREF 3DAS A 4 347 UNP Q9Z571 Q9Z571_STRCO 104 447 SEQADV 3DAS GLY A 1 UNP Q9Z571 EXPRESSION TAG SEQADV 3DAS ALA A 2 UNP Q9Z571 EXPRESSION TAG SEQADV 3DAS MSE A 3 UNP Q9Z571 EXPRESSION TAG SEQRES 1 A 347 GLY ALA MSE SER SER PRO ALA GLY SER PRO THR GLU GLN SEQRES 2 A 347 ALA PRO PRO ALA LYS GLY SER VAL LYS VAL LEU ARG THR SEQRES 3 A 347 VAL ALA THR GLY LEU ASN SER PRO TRP GLY LEU ALA PRO SEQRES 4 A 347 LEU PRO GLY GLY ASP LEU LEU VAL SER SER ARG ASP GLU SEQRES 5 A 347 ALA THR ILE THR ARG VAL ASP ALA LYS THR GLY ARG LYS SEQRES 6 A 347 THR GLU LEU GLY GLU VAL PRO GLY VAL SER PRO SER GLY SEQRES 7 A 347 GLU GLY GLY LEU LEU GLY ILE ALA LEU SER PRO ASP TYR SEQRES 8 A 347 ALA SER ASP HIS MSE VAL TYR ALA TYR PHE THR SER ALA SEQRES 9 A 347 SER ASP ASN ARG ILE VAL ARG MSE LEU TYR ASP GLU LYS SEQRES 10 A 347 LYS PRO SER GLY GLU GLN LEU GLY ALA PRO ASP THR VAL SEQRES 11 A 347 PHE ARG GLY ILE PRO LYS GLY VAL ILE HIS ASN GLY GLY SEQRES 12 A 347 ARG ILE ALA PHE GLY PRO ASP LYS MSE LEU TYR ALA GLY SEQRES 13 A 347 THR GLY GLU SER GLY ASP THR GLY LEU SER GLN ASP ARG SEQRES 14 A 347 LYS SER LEU GLY GLY LYS ILE LEU ARG MSE THR PRO ASP SEQRES 15 A 347 GLY GLU PRO ALA PRO GLY ASN PRO PHE PRO GLY SER PRO SEQRES 16 A 347 VAL TYR SER TYR GLY HIS ARG ASN VAL GLN GLY LEU ALA SEQRES 17 A 347 TRP ASP ASP LYS GLN ARG LEU PHE ALA SER GLU PHE GLY SEQRES 18 A 347 GLN ASP THR TRP ASP GLU LEU ASN ALA ILE LYS PRO GLY SEQRES 19 A 347 ASP ASN TYR GLY TRP PRO GLU ALA GLU GLY LYS GLY GLY SEQRES 20 A 347 GLY SER GLY PHE HIS ASP PRO VAL ALA GLN TRP SER THR SEQRES 21 A 347 ASP GLU ALA SER PRO SER GLY ILE ALA TYR ALA GLU GLY SEQRES 22 A 347 SER VAL TRP MSE ALA GLY LEU ARG GLY GLU ARG LEU TRP SEQRES 23 A 347 ARG ILE PRO LEU LYS GLY THR ALA ALA ALA ALA ASP PRO SEQRES 24 A 347 GLN ALA PHE LEU GLU GLY GLU TYR GLY ARG LEU ARG THR SEQRES 25 A 347 VAL ALA PRO ALA GLY GLY ASP LYS LEU TRP LEU VAL THR SEQRES 26 A 347 SER ASN THR ASP GLY ARG GLY ASP ALA LYS GLY GLY ASP SEQRES 27 A 347 ASP ARG ILE LEU GLU LEU GLU VAL GLU MODRES 3DAS MSE A 96 MET SELENOMETHIONINE MODRES 3DAS MSE A 112 MET SELENOMETHIONINE MODRES 3DAS MSE A 152 MET SELENOMETHIONINE MODRES 3DAS MSE A 179 MET SELENOMETHIONINE MODRES 3DAS MSE A 277 MET SELENOMETHIONINE HET MSE A 96 13 HET MSE A 112 8 HET MSE A 152 8 HET MSE A 179 8 HET MSE A 277 8 HET ARA A 348 10 HET ARA A 349 10 HET CA A 350 1 HET CA A 351 1 HET PQQ A4331 24 HET EDO A4332 4 HET EDO A4333 4 HET EDO A4334 4 HET EDO A4335 4 HET EDO A4336 4 HET EDO A4337 4 HET EDO A4338 4 HET EDO A4339 4 HETNAM MSE SELENOMETHIONINE HETNAM ARA ALPHA-L-ARABINOPYRANOSE HETNAM CA CALCIUM ION HETNAM PQQ PYRROLOQUINOLINE QUINONE HETNAM EDO 1,2-ETHANEDIOL HETSYN ARA ALPHA-L-ARABINOSE; L-ARABINOSE; ARABINOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 ARA 2(C5 H10 O5) FORMUL 4 CA 2(CA 2+) FORMUL 6 PQQ C14 H6 N2 O8 FORMUL 7 EDO 8(C2 H6 O2) FORMUL 15 HOH *481(H2 O) HELIX 1 1 ASP A 90 HIS A 95 1 6 HELIX 2 2 ASP A 162 SER A 166 5 5 SHEET 1 A 4 SER A 20 ALA A 28 0 SHEET 2 A 4 ILE A 341 GLU A 347 -1 O ILE A 341 N VAL A 27 SHEET 3 A 4 LYS A 320 THR A 325 -1 N LEU A 323 O LEU A 342 SHEET 4 A 4 LEU A 310 GLY A 317 -1 N ALA A 314 O TRP A 322 SHEET 1 B 4 PRO A 34 PRO A 39 0 SHEET 2 B 4 LEU A 45 SER A 49 -1 O LEU A 46 N ALA A 38 SHEET 3 B 4 THR A 54 VAL A 58 -1 O VAL A 58 N LEU A 45 SHEET 4 B 4 LYS A 65 GLU A 70 -1 O THR A 66 N ARG A 57 SHEET 1 C 4 LEU A 82 LEU A 87 0 SHEET 2 C 4 MSE A 96 THR A 102 -1 O TYR A 98 N ALA A 86 SHEET 3 C 4 ASN A 107 LEU A 113 -1 O MSE A 112 N VAL A 97 SHEET 4 C 4 ASP A 128 ILE A 134 -1 O PHE A 131 N ILE A 109 SHEET 1 D 4 ILE A 145 PHE A 147 0 SHEET 2 D 4 LEU A 153 GLY A 156 -1 O TYR A 154 N ALA A 146 SHEET 3 D 4 ILE A 176 MSE A 179 -1 O LEU A 177 N ALA A 155 SHEET 4 D 4 VAL A 196 SER A 198 -1 O TYR A 197 N ILE A 176 SHEET 1 E 4 GLY A 206 TRP A 209 0 SHEET 2 E 4 LEU A 215 GLU A 219 -1 O PHE A 216 N ALA A 208 SHEET 3 E 4 ASP A 226 ILE A 231 -1 O ASN A 229 N ALA A 217 SHEET 4 E 4 ALA A 256 TRP A 258 -1 O TRP A 258 N ASP A 226 SHEET 1 F 4 PRO A 265 ALA A 271 0 SHEET 2 F 4 SER A 274 GLY A 279 -1 O TRP A 276 N ALA A 269 SHEET 3 F 4 LEU A 285 LYS A 291 -1 O TRP A 286 N MSE A 277 SHEET 4 F 4 ALA A 294 ALA A 295 -1 O ALA A 294 N LYS A 291 SHEET 1 G 4 PRO A 265 ALA A 271 0 SHEET 2 G 4 SER A 274 GLY A 279 -1 O TRP A 276 N ALA A 269 SHEET 3 G 4 LEU A 285 LYS A 291 -1 O TRP A 286 N MSE A 277 SHEET 4 G 4 GLN A 300 PHE A 302 -1 O GLN A 300 N ARG A 287 LINK C HIS A 95 N MSE A 96 1555 1555 1.34 LINK C MSE A 96 N VAL A 97 1555 1555 1.33 LINK C ARG A 111 N AMSE A 112 1555 1555 1.33 LINK C AMSE A 112 N LEU A 113 1555 1555 1.33 LINK C LYS A 151 N AMSE A 152 1555 1555 1.33 LINK C AMSE A 152 N LEU A 153 1555 1555 1.33 LINK C ARG A 178 N MSE A 179 1555 1555 1.32 LINK C MSE A 179 N THR A 180 1555 1555 1.33 LINK C TRP A 276 N AMSE A 277 1555 1555 1.33 LINK C AMSE A 277 N ALA A 278 1555 1555 1.33 LINK O GLY A 221 CA CA A 351 1555 1555 2.38 LINK O GLN A 222 CA CA A 351 1555 1555 2.46 LINK OE1 GLU A 227 CA CA A 350 1555 1555 2.49 LINK OE2 GLU A 227 CA CA A 350 1555 1555 2.46 LINK O TYR A 237 CA CA A 350 1555 1555 2.36 LINK CA CA A 350 O HOH A4343 1555 1555 2.42 LINK CA CA A 350 O HOH A4344 1555 1555 2.44 LINK CA CA A 350 O HOH A4363 1555 1555 2.37 LINK CA CA A 350 O HOH A4375 1555 1555 2.41 LINK CA CA A 351 O7A PQQ A4331 1555 1555 2.46 LINK CA CA A 351 N6 PQQ A4331 1555 1555 2.45 LINK CA CA A 351 O5 PQQ A4331 1555 1555 2.45 LINK CA CA A 351 O HOH A4348 1555 1555 2.43 LINK CA CA A 351 O HOH A4350 1555 1555 2.46 CISPEP 1 TRP A 239 PRO A 240 0 2.25 CISPEP 2 ASP A 338 ASP A 339 0 -9.33 CRYST1 49.033 41.260 85.931 90.00 93.58 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020395 0.000000 0.001275 0.00000 SCALE2 0.000000 0.024237 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011660 0.00000