data_3DB0 # _entry.id 3DB0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DB0 pdb_00003db0 10.2210/pdb3db0/pdb RCSB RCSB047813 ? ? WWPDB D_1000047813 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 380201 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3DB0 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-05-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of Putative Pyridoxamine 5'-phosphate oxidase (NP_472219.1) from LISTERIA INNOCUA at 2.00 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3DB0 _cell.length_a 92.160 _cell.length_b 42.230 _cell.length_c 62.020 _cell.angle_alpha 90.000 _cell.angle_beta 91.590 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DB0 _symmetry.Int_Tables_number 5 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lin2891 protein' 14604.106 2 ? ? ? ? 2 water nat water 18.015 109 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)ENELEDKILAILEQHQVGVLTSVQGDFPHARY(MSE)TFLHDGLTLYTPSGKELPKTEEVRRNPHVCVLIGYDS PGSAFLEINGLASLEEDESIKERIWENISKDWFQGEDSPSFVVIKIVPEQIRILNS ; _entity_poly.pdbx_seq_one_letter_code_can ;GMENELEDKILAILEQHQVGVLTSVQGDFPHARYMTFLHDGLTLYTPSGKELPKTEEVRRNPHVCVLIGYDSPGSAFLEI NGLASLEEDESIKERIWENISKDWFQGEDSPSFVVIKIVPEQIRILNS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 380201 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 GLU n 1 4 ASN n 1 5 GLU n 1 6 LEU n 1 7 GLU n 1 8 ASP n 1 9 LYS n 1 10 ILE n 1 11 LEU n 1 12 ALA n 1 13 ILE n 1 14 LEU n 1 15 GLU n 1 16 GLN n 1 17 HIS n 1 18 GLN n 1 19 VAL n 1 20 GLY n 1 21 VAL n 1 22 LEU n 1 23 THR n 1 24 SER n 1 25 VAL n 1 26 GLN n 1 27 GLY n 1 28 ASP n 1 29 PHE n 1 30 PRO n 1 31 HIS n 1 32 ALA n 1 33 ARG n 1 34 TYR n 1 35 MSE n 1 36 THR n 1 37 PHE n 1 38 LEU n 1 39 HIS n 1 40 ASP n 1 41 GLY n 1 42 LEU n 1 43 THR n 1 44 LEU n 1 45 TYR n 1 46 THR n 1 47 PRO n 1 48 SER n 1 49 GLY n 1 50 LYS n 1 51 GLU n 1 52 LEU n 1 53 PRO n 1 54 LYS n 1 55 THR n 1 56 GLU n 1 57 GLU n 1 58 VAL n 1 59 ARG n 1 60 ARG n 1 61 ASN n 1 62 PRO n 1 63 HIS n 1 64 VAL n 1 65 CYS n 1 66 VAL n 1 67 LEU n 1 68 ILE n 1 69 GLY n 1 70 TYR n 1 71 ASP n 1 72 SER n 1 73 PRO n 1 74 GLY n 1 75 SER n 1 76 ALA n 1 77 PHE n 1 78 LEU n 1 79 GLU n 1 80 ILE n 1 81 ASN n 1 82 GLY n 1 83 LEU n 1 84 ALA n 1 85 SER n 1 86 LEU n 1 87 GLU n 1 88 GLU n 1 89 ASP n 1 90 GLU n 1 91 SER n 1 92 ILE n 1 93 LYS n 1 94 GLU n 1 95 ARG n 1 96 ILE n 1 97 TRP n 1 98 GLU n 1 99 ASN n 1 100 ILE n 1 101 SER n 1 102 LYS n 1 103 ASP n 1 104 TRP n 1 105 PHE n 1 106 GLN n 1 107 GLY n 1 108 GLU n 1 109 ASP n 1 110 SER n 1 111 PRO n 1 112 SER n 1 113 PHE n 1 114 VAL n 1 115 VAL n 1 116 ILE n 1 117 LYS n 1 118 ILE n 1 119 VAL n 1 120 PRO n 1 121 GLU n 1 122 GLN n 1 123 ILE n 1 124 ARG n 1 125 ILE n 1 126 LEU n 1 127 ASN n 1 128 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene lin2891 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Listeria innocua' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1642 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q926Z8_LISIN _struct_ref.pdbx_db_accession Q926Z8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MENELEDKILAILEQHQVGVLTSVQGDFPHARYMTFLHDGLTLYTPSGKELPKTEEVRRNPHVCVLIGYDSPGSAFLEIN GLASLEEDESIKERIWENISKDWFQGEDSPSFVVIKIVPEQIRILNS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DB0 A 2 ? 128 ? Q926Z8 1 ? 127 ? 1 127 2 1 3DB0 B 2 ? 128 ? Q926Z8 1 ? 127 ? 1 127 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DB0 GLY A 1 ? UNP Q926Z8 ? ? 'expression tag' 0 1 2 3DB0 GLY B 1 ? UNP Q926Z8 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3DB0 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.57 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '40.9% 1,2-propanediol, 0.1M sodium acetate pH 4.57, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-04-13 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97956 1.0 3 0.97908 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97956,0.97908 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3DB0 _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 26.055 _reflns.number_obs 16307 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_netI_over_sigmaI 8.880 _reflns.percent_possible_obs 98.100 _reflns.B_iso_Wilson_estimate 26.246 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.00 2.07 5490 ? 2885 0.459 1.8 ? ? ? ? ? 92.90 1 1 2.07 2.15 5869 ? 3059 0.379 2.3 ? ? ? ? ? 98.70 2 1 2.15 2.25 6207 ? 3211 0.273 2.9 ? ? ? ? ? 98.90 3 1 2.25 2.37 6144 ? 3185 0.231 3.5 ? ? ? ? ? 99.20 4 1 2.37 2.52 6156 ? 3185 0.176 4.5 ? ? ? ? ? 99.00 5 1 2.52 2.71 5983 ? 3086 0.145 5.7 ? ? ? ? ? 99.00 6 1 2.71 2.99 6264 ? 3228 0.087 8.7 ? ? ? ? ? 98.90 7 1 2.99 3.42 6059 ? 3109 0.052 13.6 ? ? ? ? ? 98.50 8 1 3.42 4.30 6060 ? 3098 0.033 20.4 ? ? ? ? ? 98.30 9 1 4.30 26.06 6127 ? 3130 0.025 25.1 ? ? ? ? ? 97.90 10 1 # _refine.entry_id 3DB0 _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 26.055 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.580 _refine.ls_number_reflns_obs 16307 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. ; _refine.ls_R_factor_obs 0.185 _refine.ls_R_factor_R_work 0.182 _refine.ls_R_factor_R_free 0.239 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 828 _refine.B_iso_mean 23.250 _refine.aniso_B[1][1] 0.040 _refine.aniso_B[2][2] 0.320 _refine.aniso_B[3][3] -0.430 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -1.270 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.930 _refine.pdbx_overall_ESU_R 0.191 _refine.pdbx_overall_ESU_R_Free 0.175 _refine.overall_SU_ML 0.119 _refine.overall_SU_B 8.466 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1863 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 109 _refine_hist.number_atoms_total 1972 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 26.055 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1929 0.017 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1256 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2630 1.725 1.962 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3094 1.005 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 242 3.978 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 84 32.051 25.119 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 316 12.326 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 14.793 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 305 0.099 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2144 0.008 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 363 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1213 1.942 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 485 0.725 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1967 3.193 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 716 5.578 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 663 8.194 11.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 'MEDIUM POSITIONAL' A 1104 0.510 0.500 1 'X-RAY DIFFRACTION' 1 ? ? ? 1 'MEDIUM THERMAL' A 1104 1.690 2.000 1 'X-RAY DIFFRACTION' 2 ? ? ? # _refine_ls_shell.d_res_high 1.999 _refine_ls_shell.d_res_low 2.051 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.810 _refine_ls_shell.number_reflns_R_work 1100 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.205 _refine_ls_shell.R_factor_R_free 0.248 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1161 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 1 3 A 1 4 B 1 5 A 1 6 B # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 1 A 4 A 47 4 . . . . A 4 A 47 1 ? 2 1 B 4 B 47 4 . . . . B 4 B 47 1 ? 3 2 A 64 A 94 4 . . . . A 64 A 94 1 ? 4 2 B 64 B 94 4 . . . . B 64 B 94 1 ? 5 3 A 111 A 126 4 . . . . A 111 A 126 1 ? 6 3 B 111 B 126 4 . . . . B 111 B 126 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3DB0 _struct.title ;Crystal structure of Putative Pyridoxamine 5'-phosphate oxidase (NP_472219.1) from LISTERIA INNOCUA at 2.00 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.text ;NP_472219.1, Putative Pyridoxamine 5'-phosphate oxidase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, OXIDOREDUCTASE ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.entry_id 3DB0 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ;AUTHORS STATE THAT SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF AN DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. THE DIMER IS CONSISTENT AN ANALYSIS OF CRYSTAL PACKING AND A SIMILAR DIMER IS PREDICTED TO BE A STABLE FOR SEVERAL HOMOLOGS. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 2 ? GLN A 16 ? MSE A 1 GLN A 15 1 ? 15 HELX_P HELX_P2 2 ASP A 89 ? SER A 101 ? ASP A 88 SER A 100 1 ? 13 HELX_P HELX_P3 3 GLU B 5 ? HIS B 17 ? GLU B 4 HIS B 16 1 ? 13 HELX_P HELX_P4 4 LEU B 52 ? ASN B 61 ? LEU B 51 ASN B 60 1 ? 10 HELX_P HELX_P5 5 ASP B 89 ? SER B 101 ? ASP B 88 SER B 100 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A GLU 3 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale2 covale both ? A TYR 34 C ? ? ? 1_555 A MSE 35 N ? ? A TYR 33 A MSE 34 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? A MSE 35 C ? ? ? 1_555 A THR 36 N ? ? A MSE 34 A THR 35 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? B TYR 34 C ? ? ? 1_555 B MSE 35 N ? ? B TYR 33 B MSE 34 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale5 covale both ? B MSE 35 C ? ? ? 1_555 B THR 36 N ? ? B MSE 34 B THR 35 1_555 ? ? ? ? ? ? ? 1.325 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 29 ? THR A 36 ? PHE A 28 THR A 35 A 2 VAL A 19 ? GLN A 26 ? VAL A 18 GLN A 25 A 3 HIS A 63 ? ILE A 68 ? HIS A 62 ILE A 67 A 4 PHE A 77 ? LEU A 86 ? PHE A 76 LEU A 85 A 5 VAL A 114 ? LEU A 126 ? VAL A 113 LEU A 125 A 6 THR A 43 ? SER A 48 ? THR A 42 SER A 47 A 7 LEU A 38 ? ASP A 40 ? LEU A 37 ASP A 39 B 1 PHE B 29 ? THR B 36 ? PHE B 28 THR B 35 B 2 VAL B 19 ? GLN B 26 ? VAL B 18 GLN B 25 B 3 HIS B 63 ? ILE B 68 ? HIS B 62 ILE B 67 B 4 PHE B 77 ? LEU B 86 ? PHE B 76 LEU B 85 B 5 PHE B 113 ? LEU B 126 ? PHE B 112 LEU B 125 B 6 THR B 43 ? GLY B 49 ? THR B 42 GLY B 48 B 7 LEU B 38 ? ASP B 40 ? LEU B 37 ASP B 39 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG A 33 ? O ARG A 32 N LEU A 22 ? N LEU A 21 A 2 3 N VAL A 21 ? N VAL A 20 O LEU A 67 ? O LEU A 66 A 3 4 N ILE A 68 ? N ILE A 67 O LEU A 78 ? O LEU A 77 A 4 5 N PHE A 77 ? N PHE A 76 O LEU A 126 ? O LEU A 125 A 5 6 O ILE A 116 ? O ILE A 115 N THR A 46 ? N THR A 45 A 6 7 O TYR A 45 ? O TYR A 44 N LEU A 38 ? N LEU A 37 B 1 2 O ARG B 33 ? O ARG B 32 N LEU B 22 ? N LEU B 21 B 2 3 N VAL B 21 ? N VAL B 20 O LEU B 67 ? O LEU B 66 B 3 4 N VAL B 66 ? N VAL B 65 O ILE B 80 ? O ILE B 79 B 4 5 N SER B 85 ? N SER B 84 O LYS B 117 ? O LYS B 116 B 5 6 O ILE B 118 ? O ILE B 117 N LEU B 44 ? N LEU B 43 B 6 7 O TYR B 45 ? O TYR B 44 N LEU B 38 ? N LEU B 37 # _atom_sites.entry_id 3DB0 _atom_sites.fract_transf_matrix[1][1] 0.010851 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000301 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023680 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016130 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 GLU 3 2 2 GLU GLU A . n A 1 4 ASN 4 3 3 ASN ASN A . n A 1 5 GLU 5 4 4 GLU GLU A . n A 1 6 LEU 6 5 5 LEU LEU A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 ASP 8 7 7 ASP ASP A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 ILE 10 9 9 ILE ILE A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 ILE 13 12 12 ILE ILE A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 GLN 16 15 15 GLN GLN A . n A 1 17 HIS 17 16 16 HIS HIS A . n A 1 18 GLN 18 17 17 GLN GLN A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 GLY 20 19 19 GLY GLY A . n A 1 21 VAL 21 20 20 VAL VAL A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 THR 23 22 22 THR THR A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 VAL 25 24 24 VAL VAL A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 PHE 29 28 28 PHE PHE A . n A 1 30 PRO 30 29 29 PRO PRO A . n A 1 31 HIS 31 30 30 HIS HIS A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 ARG 33 32 32 ARG ARG A . n A 1 34 TYR 34 33 33 TYR TYR A . n A 1 35 MSE 35 34 34 MSE MSE A . n A 1 36 THR 36 35 35 THR THR A . n A 1 37 PHE 37 36 36 PHE PHE A . n A 1 38 LEU 38 37 37 LEU LEU A . n A 1 39 HIS 39 38 38 HIS HIS A . n A 1 40 ASP 40 39 39 ASP ASP A . n A 1 41 GLY 41 40 40 GLY GLY A . n A 1 42 LEU 42 41 41 LEU LEU A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 TYR 45 44 44 TYR TYR A . n A 1 46 THR 46 45 45 THR THR A . n A 1 47 PRO 47 46 46 PRO PRO A . n A 1 48 SER 48 47 47 SER SER A . n A 1 49 GLY 49 48 ? ? ? A . n A 1 50 LYS 50 49 ? ? ? A . n A 1 51 GLU 51 50 ? ? ? A . n A 1 52 LEU 52 51 ? ? ? A . n A 1 53 PRO 53 52 52 PRO PRO A . n A 1 54 LYS 54 53 53 LYS LYS A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 GLU 56 55 55 GLU GLU A . n A 1 57 GLU 57 56 56 GLU GLU A . n A 1 58 VAL 58 57 57 VAL VAL A . n A 1 59 ARG 59 58 58 ARG ARG A . n A 1 60 ARG 60 59 59 ARG ARG A . n A 1 61 ASN 61 60 60 ASN ASN A . n A 1 62 PRO 62 61 61 PRO PRO A . n A 1 63 HIS 63 62 62 HIS HIS A . n A 1 64 VAL 64 63 63 VAL VAL A . n A 1 65 CYS 65 64 64 CYS CYS A . n A 1 66 VAL 66 65 65 VAL VAL A . n A 1 67 LEU 67 66 66 LEU LEU A . n A 1 68 ILE 68 67 67 ILE ILE A . n A 1 69 GLY 69 68 68 GLY GLY A . n A 1 70 TYR 70 69 69 TYR TYR A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 SER 72 71 71 SER SER A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 GLY 74 73 73 GLY GLY A . n A 1 75 SER 75 74 74 SER SER A . n A 1 76 ALA 76 75 75 ALA ALA A . n A 1 77 PHE 77 76 76 PHE PHE A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 GLU 79 78 78 GLU GLU A . n A 1 80 ILE 80 79 79 ILE ILE A . n A 1 81 ASN 81 80 80 ASN ASN A . n A 1 82 GLY 82 81 81 GLY GLY A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 ALA 84 83 83 ALA ALA A . n A 1 85 SER 85 84 84 SER SER A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 GLU 88 87 87 GLU GLU A . n A 1 89 ASP 89 88 88 ASP ASP A . n A 1 90 GLU 90 89 89 GLU GLU A . n A 1 91 SER 91 90 90 SER SER A . n A 1 92 ILE 92 91 91 ILE ILE A . n A 1 93 LYS 93 92 92 LYS LYS A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 ARG 95 94 94 ARG ARG A . n A 1 96 ILE 96 95 95 ILE ILE A . n A 1 97 TRP 97 96 96 TRP TRP A . n A 1 98 GLU 98 97 97 GLU GLU A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 ILE 100 99 99 ILE ILE A . n A 1 101 SER 101 100 100 SER SER A . n A 1 102 LYS 102 101 101 LYS LYS A . n A 1 103 ASP 103 102 102 ASP ASP A . n A 1 104 TRP 104 103 103 TRP TRP A . n A 1 105 PHE 105 104 104 PHE PHE A . n A 1 106 GLN 106 105 105 GLN GLN A . n A 1 107 GLY 107 106 ? ? ? A . n A 1 108 GLU 108 107 ? ? ? A . n A 1 109 ASP 109 108 ? ? ? A . n A 1 110 SER 110 109 ? ? ? A . n A 1 111 PRO 111 110 ? ? ? A . n A 1 112 SER 112 111 ? ? ? A . n A 1 113 PHE 113 112 112 PHE PHE A . n A 1 114 VAL 114 113 113 VAL VAL A . n A 1 115 VAL 115 114 114 VAL VAL A . n A 1 116 ILE 116 115 115 ILE ILE A . n A 1 117 LYS 117 116 116 LYS LYS A . n A 1 118 ILE 118 117 117 ILE ILE A . n A 1 119 VAL 119 118 118 VAL VAL A . n A 1 120 PRO 120 119 119 PRO PRO A . n A 1 121 GLU 121 120 120 GLU GLU A . n A 1 122 GLN 122 121 121 GLN GLN A . n A 1 123 ILE 123 122 122 ILE ILE A . n A 1 124 ARG 124 123 123 ARG ARG A . n A 1 125 ILE 125 124 124 ILE ILE A . n A 1 126 LEU 126 125 125 LEU LEU A . n A 1 127 ASN 127 126 126 ASN ASN A . n A 1 128 SER 128 127 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MSE 2 1 ? ? ? B . n B 1 3 GLU 3 2 ? ? ? B . n B 1 4 ASN 4 3 ? ? ? B . n B 1 5 GLU 5 4 4 GLU GLU B . n B 1 6 LEU 6 5 5 LEU LEU B . n B 1 7 GLU 7 6 6 GLU GLU B . n B 1 8 ASP 8 7 7 ASP ASP B . n B 1 9 LYS 9 8 8 LYS LYS B . n B 1 10 ILE 10 9 9 ILE ILE B . n B 1 11 LEU 11 10 10 LEU LEU B . n B 1 12 ALA 12 11 11 ALA ALA B . n B 1 13 ILE 13 12 12 ILE ILE B . n B 1 14 LEU 14 13 13 LEU LEU B . n B 1 15 GLU 15 14 14 GLU GLU B . n B 1 16 GLN 16 15 15 GLN GLN B . n B 1 17 HIS 17 16 16 HIS HIS B . n B 1 18 GLN 18 17 17 GLN GLN B . n B 1 19 VAL 19 18 18 VAL VAL B . n B 1 20 GLY 20 19 19 GLY GLY B . n B 1 21 VAL 21 20 20 VAL VAL B . n B 1 22 LEU 22 21 21 LEU LEU B . n B 1 23 THR 23 22 22 THR THR B . n B 1 24 SER 24 23 23 SER SER B . n B 1 25 VAL 25 24 24 VAL VAL B . n B 1 26 GLN 26 25 25 GLN GLN B . n B 1 27 GLY 27 26 26 GLY GLY B . n B 1 28 ASP 28 27 27 ASP ASP B . n B 1 29 PHE 29 28 28 PHE PHE B . n B 1 30 PRO 30 29 29 PRO PRO B . n B 1 31 HIS 31 30 30 HIS HIS B . n B 1 32 ALA 32 31 31 ALA ALA B . n B 1 33 ARG 33 32 32 ARG ARG B . n B 1 34 TYR 34 33 33 TYR TYR B . n B 1 35 MSE 35 34 34 MSE MSE B . n B 1 36 THR 36 35 35 THR THR B . n B 1 37 PHE 37 36 36 PHE PHE B . n B 1 38 LEU 38 37 37 LEU LEU B . n B 1 39 HIS 39 38 38 HIS HIS B . n B 1 40 ASP 40 39 39 ASP ASP B . n B 1 41 GLY 41 40 40 GLY GLY B . n B 1 42 LEU 42 41 41 LEU LEU B . n B 1 43 THR 43 42 42 THR THR B . n B 1 44 LEU 44 43 43 LEU LEU B . n B 1 45 TYR 45 44 44 TYR TYR B . n B 1 46 THR 46 45 45 THR THR B . n B 1 47 PRO 47 46 46 PRO PRO B . n B 1 48 SER 48 47 47 SER SER B . n B 1 49 GLY 49 48 48 GLY GLY B . n B 1 50 LYS 50 49 49 LYS LYS B . n B 1 51 GLU 51 50 50 GLU GLU B . n B 1 52 LEU 52 51 51 LEU LEU B . n B 1 53 PRO 53 52 52 PRO PRO B . n B 1 54 LYS 54 53 53 LYS LYS B . n B 1 55 THR 55 54 54 THR THR B . n B 1 56 GLU 56 55 55 GLU GLU B . n B 1 57 GLU 57 56 56 GLU GLU B . n B 1 58 VAL 58 57 57 VAL VAL B . n B 1 59 ARG 59 58 58 ARG ARG B . n B 1 60 ARG 60 59 59 ARG ARG B . n B 1 61 ASN 61 60 60 ASN ASN B . n B 1 62 PRO 62 61 61 PRO PRO B . n B 1 63 HIS 63 62 62 HIS HIS B . n B 1 64 VAL 64 63 63 VAL VAL B . n B 1 65 CYS 65 64 64 CYS CYS B . n B 1 66 VAL 66 65 65 VAL VAL B . n B 1 67 LEU 67 66 66 LEU LEU B . n B 1 68 ILE 68 67 67 ILE ILE B . n B 1 69 GLY 69 68 68 GLY GLY B . n B 1 70 TYR 70 69 69 TYR TYR B . n B 1 71 ASP 71 70 70 ASP ASP B . n B 1 72 SER 72 71 71 SER SER B . n B 1 73 PRO 73 72 72 PRO PRO B . n B 1 74 GLY 74 73 73 GLY GLY B . n B 1 75 SER 75 74 74 SER SER B . n B 1 76 ALA 76 75 75 ALA ALA B . n B 1 77 PHE 77 76 76 PHE PHE B . n B 1 78 LEU 78 77 77 LEU LEU B . n B 1 79 GLU 79 78 78 GLU GLU B . n B 1 80 ILE 80 79 79 ILE ILE B . n B 1 81 ASN 81 80 80 ASN ASN B . n B 1 82 GLY 82 81 81 GLY GLY B . n B 1 83 LEU 83 82 82 LEU LEU B . n B 1 84 ALA 84 83 83 ALA ALA B . n B 1 85 SER 85 84 84 SER SER B . n B 1 86 LEU 86 85 85 LEU LEU B . n B 1 87 GLU 87 86 86 GLU GLU B . n B 1 88 GLU 88 87 87 GLU GLU B . n B 1 89 ASP 89 88 88 ASP ASP B . n B 1 90 GLU 90 89 89 GLU GLU B . n B 1 91 SER 91 90 90 SER SER B . n B 1 92 ILE 92 91 91 ILE ILE B . n B 1 93 LYS 93 92 92 LYS LYS B . n B 1 94 GLU 94 93 93 GLU GLU B . n B 1 95 ARG 95 94 94 ARG ARG B . n B 1 96 ILE 96 95 95 ILE ILE B . n B 1 97 TRP 97 96 96 TRP TRP B . n B 1 98 GLU 98 97 97 GLU GLU B . n B 1 99 ASN 99 98 98 ASN ASN B . n B 1 100 ILE 100 99 99 ILE ILE B . n B 1 101 SER 101 100 100 SER SER B . n B 1 102 LYS 102 101 101 LYS LYS B . n B 1 103 ASP 103 102 102 ASP ASP B . n B 1 104 TRP 104 103 103 TRP TRP B . n B 1 105 PHE 105 104 104 PHE PHE B . n B 1 106 GLN 106 105 105 GLN GLN B . n B 1 107 GLY 107 106 106 GLY GLY B . n B 1 108 GLU 108 107 107 GLU GLU B . n B 1 109 ASP 109 108 108 ASP ASP B . n B 1 110 SER 110 109 109 SER SER B . n B 1 111 PRO 111 110 110 PRO PRO B . n B 1 112 SER 112 111 111 SER SER B . n B 1 113 PHE 113 112 112 PHE PHE B . n B 1 114 VAL 114 113 113 VAL VAL B . n B 1 115 VAL 115 114 114 VAL VAL B . n B 1 116 ILE 116 115 115 ILE ILE B . n B 1 117 LYS 117 116 116 LYS LYS B . n B 1 118 ILE 118 117 117 ILE ILE B . n B 1 119 VAL 119 118 118 VAL VAL B . n B 1 120 PRO 120 119 119 PRO PRO B . n B 1 121 GLU 121 120 120 GLU GLU B . n B 1 122 GLN 122 121 121 GLN GLN B . n B 1 123 ILE 123 122 122 ILE ILE B . n B 1 124 ARG 124 123 123 ARG ARG B . n B 1 125 ILE 125 124 124 ILE ILE B . n B 1 126 LEU 126 125 125 LEU LEU B . n B 1 127 ASN 127 126 126 ASN ASN B . n B 1 128 SER 128 127 127 SER SER B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 128 2 HOH HOH A . C 2 HOH 2 129 7 HOH HOH A . C 2 HOH 3 130 11 HOH HOH A . C 2 HOH 4 131 12 HOH HOH A . C 2 HOH 5 132 13 HOH HOH A . C 2 HOH 6 133 14 HOH HOH A . C 2 HOH 7 134 15 HOH HOH A . C 2 HOH 8 135 19 HOH HOH A . C 2 HOH 9 136 28 HOH HOH A . C 2 HOH 10 137 32 HOH HOH A . C 2 HOH 11 138 33 HOH HOH A . C 2 HOH 12 139 34 HOH HOH A . C 2 HOH 13 140 35 HOH HOH A . C 2 HOH 14 141 37 HOH HOH A . C 2 HOH 15 142 40 HOH HOH A . C 2 HOH 16 143 44 HOH HOH A . C 2 HOH 17 144 46 HOH HOH A . C 2 HOH 18 145 47 HOH HOH A . C 2 HOH 19 146 48 HOH HOH A . C 2 HOH 20 147 50 HOH HOH A . C 2 HOH 21 148 52 HOH HOH A . C 2 HOH 22 149 57 HOH HOH A . C 2 HOH 23 150 59 HOH HOH A . C 2 HOH 24 151 62 HOH HOH A . C 2 HOH 25 152 64 HOH HOH A . C 2 HOH 26 153 65 HOH HOH A . C 2 HOH 27 154 71 HOH HOH A . C 2 HOH 28 155 76 HOH HOH A . C 2 HOH 29 156 79 HOH HOH A . C 2 HOH 30 157 81 HOH HOH A . C 2 HOH 31 158 83 HOH HOH A . C 2 HOH 32 159 86 HOH HOH A . C 2 HOH 33 160 87 HOH HOH A . C 2 HOH 34 161 88 HOH HOH A . C 2 HOH 35 162 89 HOH HOH A . C 2 HOH 36 163 90 HOH HOH A . C 2 HOH 37 164 91 HOH HOH A . C 2 HOH 38 165 92 HOH HOH A . C 2 HOH 39 166 93 HOH HOH A . C 2 HOH 40 167 96 HOH HOH A . C 2 HOH 41 168 97 HOH HOH A . C 2 HOH 42 169 99 HOH HOH A . C 2 HOH 43 170 100 HOH HOH A . C 2 HOH 44 171 103 HOH HOH A . C 2 HOH 45 172 104 HOH HOH A . C 2 HOH 46 173 106 HOH HOH A . C 2 HOH 47 174 109 HOH HOH A . D 2 HOH 1 128 1 HOH HOH B . D 2 HOH 2 129 3 HOH HOH B . D 2 HOH 3 130 4 HOH HOH B . D 2 HOH 4 131 5 HOH HOH B . D 2 HOH 5 132 6 HOH HOH B . D 2 HOH 6 133 8 HOH HOH B . D 2 HOH 7 134 9 HOH HOH B . D 2 HOH 8 135 10 HOH HOH B . D 2 HOH 9 136 16 HOH HOH B . D 2 HOH 10 137 17 HOH HOH B . D 2 HOH 11 138 18 HOH HOH B . D 2 HOH 12 139 20 HOH HOH B . D 2 HOH 13 140 21 HOH HOH B . D 2 HOH 14 141 22 HOH HOH B . D 2 HOH 15 142 23 HOH HOH B . D 2 HOH 16 143 24 HOH HOH B . D 2 HOH 17 144 25 HOH HOH B . D 2 HOH 18 145 26 HOH HOH B . D 2 HOH 19 146 27 HOH HOH B . D 2 HOH 20 147 29 HOH HOH B . D 2 HOH 21 148 30 HOH HOH B . D 2 HOH 22 149 31 HOH HOH B . D 2 HOH 23 150 36 HOH HOH B . D 2 HOH 24 151 38 HOH HOH B . D 2 HOH 25 152 39 HOH HOH B . D 2 HOH 26 153 41 HOH HOH B . D 2 HOH 27 154 42 HOH HOH B . D 2 HOH 28 155 43 HOH HOH B . D 2 HOH 29 156 45 HOH HOH B . D 2 HOH 30 157 49 HOH HOH B . D 2 HOH 31 158 51 HOH HOH B . D 2 HOH 32 159 53 HOH HOH B . D 2 HOH 33 160 54 HOH HOH B . D 2 HOH 34 161 55 HOH HOH B . D 2 HOH 35 162 56 HOH HOH B . D 2 HOH 36 163 58 HOH HOH B . D 2 HOH 37 164 60 HOH HOH B . D 2 HOH 38 165 61 HOH HOH B . D 2 HOH 39 166 63 HOH HOH B . D 2 HOH 40 167 66 HOH HOH B . D 2 HOH 41 168 67 HOH HOH B . D 2 HOH 42 169 68 HOH HOH B . D 2 HOH 43 170 69 HOH HOH B . D 2 HOH 44 171 70 HOH HOH B . D 2 HOH 45 172 72 HOH HOH B . D 2 HOH 46 173 73 HOH HOH B . D 2 HOH 47 174 74 HOH HOH B . D 2 HOH 48 175 75 HOH HOH B . D 2 HOH 49 176 77 HOH HOH B . D 2 HOH 50 177 78 HOH HOH B . D 2 HOH 51 178 80 HOH HOH B . D 2 HOH 52 179 82 HOH HOH B . D 2 HOH 53 180 84 HOH HOH B . D 2 HOH 54 181 85 HOH HOH B . D 2 HOH 55 182 94 HOH HOH B . D 2 HOH 56 183 95 HOH HOH B . D 2 HOH 57 184 98 HOH HOH B . D 2 HOH 58 185 101 HOH HOH B . D 2 HOH 59 186 102 HOH HOH B . D 2 HOH 60 187 105 HOH HOH B . D 2 HOH 61 188 107 HOH HOH B . D 2 HOH 62 189 108 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 35 A MSE 34 ? MET SELENOMETHIONINE 3 B MSE 35 B MSE 34 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PISA tetrameric 4 3 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D 2 1,3 A,B,C,D 3 1 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5500 ? 1 MORE -43 ? 1 'SSA (A^2)' 24610 ? 2 'ABSA (A^2)' 5680 ? 2 MORE -39 ? 2 'SSA (A^2)' 24430 ? 3 'ABSA (A^2)' 1770 ? 3 MORE -17 ? 3 'SSA (A^2)' 13280 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -1.7208796956 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 61.9961206292 3 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 16.9728 10.1908 13.2338 -0.0025 0.0422 0.0035 0.0402 -0.0181 -0.0359 1.5534 1.6881 0.9667 -0.6175 0.1829 -0.0042 -0.0079 0.0678 -0.0599 0.0117 -0.1494 -0.0393 -0.0057 0.1495 0.1567 'X-RAY DIFFRACTION' 2 ? refined -2.9192 22.9543 18.0694 -0.0610 -0.0937 -0.0652 -0.0002 0.0030 0.0103 0.8808 0.7775 1.6368 -0.5379 0.2632 0.5827 0.0223 -0.0185 -0.0037 -0.0049 -0.0175 0.0265 0.0139 0.0230 -0.0816 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 2 A 127 ? A 1 A 126 'X-RAY DIFFRACTION' ? 2 2 B 5 B 128 ? B 4 B 127 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0067 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3DB0 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT INCLUDES AMINO ACIDS 1-127 OF THE FULL LENGTH PROTEIN CONSISTING OF 139 RESIDUES AND WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 100 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -119.78 _pdbx_validate_torsion.psi 77.21 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 TRP A 103 ? ? PHE A 104 ? ? -127.15 2 1 PHE A 104 ? ? GLN A 105 ? ? -134.82 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 2 ? CG ? A GLU 3 CG 2 1 Y 1 A GLU 2 ? CD ? A GLU 3 CD 3 1 Y 1 A GLU 2 ? OE1 ? A GLU 3 OE1 4 1 Y 1 A GLU 2 ? OE2 ? A GLU 3 OE2 5 1 Y 1 A GLU 4 ? CG ? A GLU 5 CG 6 1 Y 1 A GLU 4 ? CD ? A GLU 5 CD 7 1 Y 1 A GLU 4 ? OE1 ? A GLU 5 OE1 8 1 Y 1 A GLU 4 ? OE2 ? A GLU 5 OE2 9 1 Y 1 A LYS 8 ? CD ? A LYS 9 CD 10 1 Y 1 A LYS 8 ? CE ? A LYS 9 CE 11 1 Y 1 A LYS 8 ? NZ ? A LYS 9 NZ 12 1 Y 1 A GLN 17 ? CG ? A GLN 18 CG 13 1 Y 1 A GLN 17 ? CD ? A GLN 18 CD 14 1 Y 1 A GLN 17 ? OE1 ? A GLN 18 OE1 15 1 Y 1 A GLN 17 ? NE2 ? A GLN 18 NE2 16 1 Y 1 A ARG 59 ? CG ? A ARG 60 CG 17 1 Y 1 A ARG 59 ? CD ? A ARG 60 CD 18 1 Y 1 A ARG 59 ? NE ? A ARG 60 NE 19 1 Y 1 A ARG 59 ? CZ ? A ARG 60 CZ 20 1 Y 1 A ARG 59 ? NH1 ? A ARG 60 NH1 21 1 Y 1 A ARG 59 ? NH2 ? A ARG 60 NH2 22 1 Y 1 A GLU 93 ? CD ? A GLU 94 CD 23 1 Y 1 A GLU 93 ? OE1 ? A GLU 94 OE1 24 1 Y 1 A GLU 93 ? OE2 ? A GLU 94 OE2 25 1 Y 1 A ARG 94 ? CG ? A ARG 95 CG 26 1 Y 1 A ARG 94 ? CD ? A ARG 95 CD 27 1 Y 1 A ARG 94 ? NE ? A ARG 95 NE 28 1 Y 1 A ARG 94 ? CZ ? A ARG 95 CZ 29 1 Y 1 A ARG 94 ? NH1 ? A ARG 95 NH1 30 1 Y 1 A ARG 94 ? NH2 ? A ARG 95 NH2 31 1 Y 1 A GLU 97 ? CG ? A GLU 98 CG 32 1 Y 1 A GLU 97 ? CD ? A GLU 98 CD 33 1 Y 1 A GLU 97 ? OE1 ? A GLU 98 OE1 34 1 Y 1 A GLU 97 ? OE2 ? A GLU 98 OE2 35 1 Y 1 A ASN 98 ? CG ? A ASN 99 CG 36 1 Y 1 A ASN 98 ? OD1 ? A ASN 99 OD1 37 1 Y 1 A ASN 98 ? ND2 ? A ASN 99 ND2 38 1 Y 1 A SER 100 ? OG ? A SER 101 OG 39 1 Y 1 A LYS 101 ? CB ? A LYS 102 CB 40 1 Y 1 A LYS 101 ? CG ? A LYS 102 CG 41 1 Y 1 A LYS 101 ? CD ? A LYS 102 CD 42 1 Y 1 A LYS 101 ? CE ? A LYS 102 CE 43 1 Y 1 A LYS 101 ? NZ ? A LYS 102 NZ 44 1 Y 1 A ASP 102 ? CG ? A ASP 103 CG 45 1 Y 1 A ASP 102 ? OD1 ? A ASP 103 OD1 46 1 Y 1 A ASP 102 ? OD2 ? A ASP 103 OD2 47 1 Y 1 A PHE 104 ? CG ? A PHE 105 CG 48 1 Y 1 A PHE 104 ? CD1 ? A PHE 105 CD1 49 1 Y 1 A PHE 104 ? CD2 ? A PHE 105 CD2 50 1 Y 1 A PHE 104 ? CE1 ? A PHE 105 CE1 51 1 Y 1 A PHE 104 ? CE2 ? A PHE 105 CE2 52 1 Y 1 A PHE 104 ? CZ ? A PHE 105 CZ 53 1 Y 1 A GLN 105 ? CG ? A GLN 106 CG 54 1 Y 1 A GLN 105 ? CD ? A GLN 106 CD 55 1 Y 1 A GLN 105 ? OE1 ? A GLN 106 OE1 56 1 Y 1 A GLN 105 ? NE2 ? A GLN 106 NE2 57 1 Y 1 A ARG 123 ? NE ? A ARG 124 NE 58 1 Y 1 A ARG 123 ? CZ ? A ARG 124 CZ 59 1 Y 1 A ARG 123 ? NH1 ? A ARG 124 NH1 60 1 Y 1 A ARG 123 ? NH2 ? A ARG 124 NH2 61 1 Y 1 B GLU 4 ? CD ? B GLU 5 CD 62 1 Y 1 B GLU 4 ? OE1 ? B GLU 5 OE1 63 1 Y 1 B GLU 4 ? OE2 ? B GLU 5 OE2 64 1 Y 1 B LYS 8 ? CG ? B LYS 9 CG 65 1 Y 1 B LYS 8 ? CD ? B LYS 9 CD 66 1 Y 1 B LYS 8 ? CE ? B LYS 9 CE 67 1 Y 1 B LYS 8 ? NZ ? B LYS 9 NZ 68 1 Y 1 B GLU 107 ? CG ? B GLU 108 CG 69 1 Y 1 B GLU 107 ? CD ? B GLU 108 CD 70 1 Y 1 B GLU 107 ? OE1 ? B GLU 108 OE1 71 1 Y 1 B GLU 107 ? OE2 ? B GLU 108 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLY 48 ? A GLY 49 3 1 Y 1 A LYS 49 ? A LYS 50 4 1 Y 1 A GLU 50 ? A GLU 51 5 1 Y 1 A LEU 51 ? A LEU 52 6 1 Y 1 A GLY 106 ? A GLY 107 7 1 Y 1 A GLU 107 ? A GLU 108 8 1 Y 1 A ASP 108 ? A ASP 109 9 1 Y 1 A SER 109 ? A SER 110 10 1 Y 1 A PRO 110 ? A PRO 111 11 1 Y 1 A SER 111 ? A SER 112 12 1 Y 1 A SER 127 ? A SER 128 13 1 Y 1 B GLY 0 ? B GLY 1 14 1 Y 1 B MSE 1 ? B MSE 2 15 1 Y 1 B GLU 2 ? B GLU 3 16 1 Y 1 B ASN 3 ? B ASN 4 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 3 'gel filtration' ? 2 3 'light scattering' ? 3 3 homology ? #