HEADER TOXIN/ANTITOXIN 02-JUN-08 3DBO TITLE CRYSTAL STRUCTURE OF A MEMBER OF THE VAPBC FAMILY OF TOXIN-ANTITOXIN TITLE 2 SYSTEMS, VAPBC-5, FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 ATCC: 25618; SOURCE 6 GENE: RV0626, MT0654; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET46DUET; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 14 ORGANISM_TAXID: 83332; SOURCE 15 STRAIN: H37RV; SOURCE 16 ATCC: 25618; SOURCE 17 GENE: RV0627; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PET46DUET KEYWDS TOXIN ANTITOXIN COMPLEX, VAPBC, MYCOBACTERIUM TUBERCULOSIS, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, INTEGRATED KEYWDS 3 CENTER FOR STRUCTURE AND FUNCTION INNOVATION, ISFI, TB STRUCTURAL KEYWDS 4 GENOMICS CONSORTIUM, TBSGC, TOXIN-ANTITOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.MIALLAU,D.CASCIO,D.EISENBERG,INTEGRATED CENTER FOR STRUCTURE AND AUTHOR 2 FUNCTION INNOVATION (ISFI),TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 8 21-FEB-24 3DBO 1 REMARK SEQADV LINK REVDAT 7 13-JUL-11 3DBO 1 VERSN REVDAT 6 09-JUN-09 3DBO 1 REVDAT REVDAT 5 24-FEB-09 3DBO 1 VERSN REVDAT 4 20-JAN-09 3DBO 1 REMARK REVDAT 3 13-JAN-09 3DBO 1 JRNL REVDAT 2 25-NOV-08 3DBO 1 JRNL REVDAT 1 15-JUL-08 3DBO 0 JRNL AUTH L.MIALLAU,M.FALLER,J.CHIANG,M.ARBING,F.GUO,D.CASCIO, JRNL AUTH 2 D.EISENBERG JRNL TITL STRUCTURE AND PROPOSED ACTIVITY OF A MEMBER OF THE VAPBC JRNL TITL 2 FAMILY OF TOXIN-ANTITOXIN SYSTEMS: VAPBC-5 FROM JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.BIOL.CHEM. V. 284 276 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 18952600 JRNL DOI 10.1074/JBC.M805061200 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0061 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.5 REMARK 3 NUMBER OF REFLECTIONS : 16830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 915 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 324 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 21.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.1580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.241 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1293 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1765 ; 1.282 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 161 ; 4.969 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;27.500 ;22.105 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 222 ;14.965 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.088 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 229 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 948 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 823 ; 0.801 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1338 ; 1.399 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 470 ; 1.995 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 427 ; 3.186 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-07; 21-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 77; NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; APS REMARK 200 BEAMLINE : 8.2.2; 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795; 1.5418 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19839 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 56.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 0.1 M NA ACETATE PH 4.6, 0.2 REMARK 280 M NACL, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.76667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.88333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.32500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.44167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 137.20833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 109.76667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.88333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.44167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 82.32500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 137.20833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ALA A 3 REMARK 465 GLY A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 MET A 8 REMARK 465 SER A 9 REMARK 465 GLU A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 15 REMARK 465 LEU A 16 REMARK 465 ARG A 17 REMARK 465 ASN A 18 REMARK 465 ASP A 19 REMARK 465 THR A 20 REMARK 465 ALA A 21 REMARK 465 GLY A 22 REMARK 465 VAL A 23 REMARK 465 LEU A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 VAL A 27 REMARK 465 ARG A 28 REMARK 465 ALA A 29 REMARK 465 GLY A 30 REMARK 465 GLU A 31 REMARK 465 ASP A 32 REMARK 465 VAL A 33 REMARK 465 THR A 34 REMARK 465 ILE A 35 REMARK 465 THR A 36 REMARK 465 VAL A 37 REMARK 465 SER A 38 REMARK 465 GLY A 39 REMARK 465 ARG A 40 REMARK 465 PRO A 41 REMARK 465 VAL A 42 REMARK 465 ALA A 43 REMARK 465 VAL A 44 REMARK 465 LEU A 45 REMARK 465 THR A 46 REMARK 465 PRO A 47 REMARK 465 VAL A 48 REMARK 465 ARG A 49 REMARK 465 PRO A 50 REMARK 465 ARG A 51 REMARK 465 ARG A 52 REMARK 465 GLU A 87 REMARK 465 ASP A 88 REMARK 465 LEU A 89 REMARK 465 GLY A 90 REMARK 465 PRO A 91 REMARK 465 ILE A 92 REMARK 465 ARG A 93 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 VAL B 9 REMARK 465 ASP B 10 REMARK 465 ASP B 11 REMARK 465 ASP B 12 REMARK 465 ASP B 13 REMARK 465 LYS B 14 REMARK 465 MET B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 THR B 18 REMARK 465 THR B 19 REMARK 465 THR B 33 REMARK 465 GLU B 34 REMARK 465 SER B 35 REMARK 465 GLY B 36 REMARK 465 ARG B 37 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 82 28.87 -148.04 REMARK 500 THR B 50 -166.04 -128.62 REMARK 500 SER B 144 -2.94 66.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 25 O REMARK 620 2 THR B 51 OG1 144.2 REMARK 620 3 THR B 54 OG1 94.1 110.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 62 O REMARK 620 2 ALA B 65 O 118.3 REMARK 620 3 ARG B 71 NE 105.6 93.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 127 O REMARK 620 2 SER B 144 O 111.1 REMARK 620 3 GLU B 146 N 129.3 80.0 REMARK 620 4 HOH B 328 O 119.1 106.8 102.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV0626 RELATED DB: TARGETDB REMARK 900 TARGET ID OF ENTITY 1 REMARK 900 RELATED ID: RV0627 RELATED DB: TARGETDB REMARK 900 TARGET ID OF ENTITY 2 DBREF 3DBO A 8 93 UNP P96916 P96916_MYCTU 1 86 DBREF 3DBO B 17 150 UNP P96917 P96917_MYCTU 2 135 SEQADV 3DBO MET A 1 UNP P96916 EXPRESSION TAG SEQADV 3DBO GLN A 2 UNP P96916 EXPRESSION TAG SEQADV 3DBO ALA A 3 UNP P96916 EXPRESSION TAG SEQADV 3DBO GLY A 4 UNP P96916 EXPRESSION TAG SEQADV 3DBO PRO A 5 UNP P96916 EXPRESSION TAG SEQADV 3DBO ALA A 6 UNP P96916 EXPRESSION TAG SEQADV 3DBO LEU A 7 UNP P96916 EXPRESSION TAG SEQADV 3DBO MET B 1 UNP P96917 EXPRESSION TAG SEQADV 3DBO ALA B 2 UNP P96917 EXPRESSION TAG SEQADV 3DBO HIS B 3 UNP P96917 EXPRESSION TAG SEQADV 3DBO HIS B 4 UNP P96917 EXPRESSION TAG SEQADV 3DBO HIS B 5 UNP P96917 EXPRESSION TAG SEQADV 3DBO HIS B 6 UNP P96917 EXPRESSION TAG SEQADV 3DBO HIS B 7 UNP P96917 EXPRESSION TAG SEQADV 3DBO HIS B 8 UNP P96917 EXPRESSION TAG SEQADV 3DBO VAL B 9 UNP P96917 EXPRESSION TAG SEQADV 3DBO ASP B 10 UNP P96917 EXPRESSION TAG SEQADV 3DBO ASP B 11 UNP P96917 EXPRESSION TAG SEQADV 3DBO ASP B 12 UNP P96917 EXPRESSION TAG SEQADV 3DBO ASP B 13 UNP P96917 EXPRESSION TAG SEQADV 3DBO LYS B 14 UNP P96917 EXPRESSION TAG SEQADV 3DBO MET B 15 UNP P96917 EXPRESSION TAG SEQADV 3DBO VAL B 16 UNP P96917 EXPRESSION TAG SEQRES 1 A 93 MET GLN ALA GLY PRO ALA LEU MET SER GLU VAL ALA SER SEQRES 2 A 93 ARG GLU LEU ARG ASN ASP THR ALA GLY VAL LEU ARG ARG SEQRES 3 A 93 VAL ARG ALA GLY GLU ASP VAL THR ILE THR VAL SER GLY SEQRES 4 A 93 ARG PRO VAL ALA VAL LEU THR PRO VAL ARG PRO ARG ARG SEQRES 5 A 93 ARG ARG TRP LEU SER LYS THR GLU PHE LEU SER ARG LEU SEQRES 6 A 93 ARG GLY ALA GLN ALA ASP PRO GLY LEU ARG ASN ASP LEU SEQRES 7 A 93 ALA VAL LEU ALA GLY ASP THR THR GLU ASP LEU GLY PRO SEQRES 8 A 93 ILE ARG SEQRES 1 B 150 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 150 LYS MET VAL SER THR THR PRO ALA ALA GLY VAL LEU ASP SEQRES 3 B 150 THR SER VAL PHE ILE ALA THR GLU SER GLY ARG GLN LEU SEQRES 4 B 150 ASP GLU ALA LEU ILE PRO ASP ARG VAL ALA THR THR VAL SEQRES 5 B 150 VAL THR LEU ALA GLU LEU ARG VAL GLY VAL LEU ALA ALA SEQRES 6 B 150 ALA THR THR ASP ILE ARG ALA GLN ARG LEU ALA THR LEU SEQRES 7 B 150 GLU SER VAL ALA ASP MET GLU THR LEU PRO VAL ASP ASP SEQRES 8 B 150 ASP ALA ALA ARG MET TRP ALA ARG LEU ARG ILE HIS LEU SEQRES 9 B 150 ALA GLU SER GLY ARG ARG VAL ARG ILE ASN ASP LEU TRP SEQRES 10 B 150 ILE ALA ALA VAL ALA ALA SER ARG ALA LEU PRO VAL ILE SEQRES 11 B 150 THR GLN ASP ASP ASP PHE ALA ALA LEU ASP GLY ALA ALA SEQRES 12 B 150 SER VAL GLU ILE ILE ARG VAL HET NA B 301 1 HET NA B 302 1 HET NA B 303 1 HET NA B 304 1 HET ACT B 305 4 HET BME B 306 4 HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 3 NA 4(NA 1+) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 BME C2 H6 O S FORMUL 9 HOH *46(H2 O) HELIX 1 1 LYS A 58 ARG A 66 1 9 HELIX 2 2 GLY A 73 GLY A 83 1 11 HELIX 3 3 THR B 27 ILE B 31 5 5 HELIX 4 4 ASP B 40 ILE B 44 5 5 HELIX 5 5 VAL B 52 ALA B 65 1 14 HELIX 6 6 THR B 67 SER B 80 1 14 HELIX 7 7 ASP B 90 GLY B 108 1 19 HELIX 8 8 ARG B 112 ARG B 125 1 14 HELIX 9 9 ASP B 135 ASP B 140 5 6 SHEET 1 A 3 LEU A 56 SER A 57 0 SHEET 2 A 3 ARG B 47 THR B 51 -1 O VAL B 48 N LEU A 56 SHEET 3 A 3 THR B 86 LEU B 87 1 O LEU B 87 N THR B 50 SHEET 1 B 5 LEU A 56 SER A 57 0 SHEET 2 B 5 ARG B 47 THR B 51 -1 O VAL B 48 N LEU A 56 SHEET 3 B 5 ALA B 22 LEU B 25 1 N LEU B 25 O ALA B 49 SHEET 4 B 5 VAL B 129 THR B 131 1 O ILE B 130 N VAL B 24 SHEET 5 B 5 ILE B 147 ARG B 149 1 O ILE B 148 N VAL B 129 LINK O LEU B 25 NA NA B 301 1555 1555 2.86 LINK OG1 THR B 51 NA NA B 301 1555 1555 2.69 LINK OG1 THR B 54 NA NA B 301 1555 1555 2.60 LINK O VAL B 62 NA NA B 304 1555 1555 2.79 LINK O ALA B 65 NA NA B 304 1555 1555 2.73 LINK NE ARG B 71 NA NA B 304 1555 1555 2.81 LINK O LEU B 127 NA NA B 302 1555 1555 2.67 LINK O SER B 144 NA NA B 302 1555 1555 2.85 LINK N GLU B 146 NA NA B 302 1555 1555 2.93 LINK NA NA B 302 O HOH B 328 1555 1555 2.74 LINK NA NA B 303 O ACT B 305 1555 1555 2.84 SITE 1 AC1 5 LEU B 25 THR B 50 THR B 51 THR B 54 SITE 2 AC1 5 ILE B 118 SITE 1 AC2 3 LEU B 127 SER B 144 GLU B 146 SITE 1 AC3 1 LEU B 78 SITE 1 AC4 3 LEU B 63 ALA B 65 ARG B 71 SITE 1 AC5 2 GLU B 79 ALA B 82 SITE 1 AC6 4 ASP B 69 HIS B 103 ALA B 142 ALA B 143 CRYST1 64.830 64.830 164.650 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015425 0.008906 0.000000 0.00000 SCALE2 0.000000 0.017811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006073 0.00000