HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-JUN-08 3DCA TITLE CRYSTAL STRUCTURE OF THE RPA0582- PROTEIN OF UNKNOWN FUNCTION FROM TITLE 2 RHODOPSEUDOMONAS PALUSTRIS- A STRUCTURAL GENOMICS TARGET COMPND MOL_ID: 1; COMPND 2 MOLECULE: RPA0582; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 1076; SOURCE 4 GENE: RPA0582; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RP; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS ALPHA-BETA-BARREL, STRUCTURAL GENOMICS, SAD, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR P.SLEDZ,S.WANG,M.CHRUSZCZ,V.YIM,M.KUDRITSKA,E.EVDOKIMOVA,D.TURK, AUTHOR 2 A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (MCSG) REVDAT 5 30-OCT-24 3DCA 1 REMARK REVDAT 4 13-APR-22 3DCA 1 AUTHOR JRNL REMARK LINK REVDAT 3 24-FEB-09 3DCA 1 VERSN REVDAT 2 19-AUG-08 3DCA 1 AUTHOR REVDAT 1 05-AUG-08 3DCA 0 JRNL AUTH P.SLEDZ,S.WANG,M.CHRUSZCZ,V.YIM,M.KUDRITSKA,E.EVDOKIMOVA, JRNL AUTH 2 D.TURK,A.SAVCHENKO,A.EDWARDS,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF THE RPA0582- PROTEIN OF UNKNOWN JRNL TITL 2 FUNCTION FROM RHODOPSEUDOMONAS PALUSTRIS- A STRUCTURAL JRNL TITL 3 GENOMICS TARGET JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0017 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 22147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1133 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1558 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3864 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 98.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.615 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.437 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.899 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3996 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2607 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5466 ; 1.685 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6277 ; 4.250 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 6.695 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;34.406 ;21.687 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;17.871 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;20.579 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 596 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4551 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 872 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 133 1 REMARK 3 1 B 2 B 133 1 REMARK 3 1 C 2 C 133 1 REMARK 3 1 D 2 D 133 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1525 ; 0.05 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 1525 ; 0.07 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 C (A): 1525 ; 0.05 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 D (A): 1525 ; 0.06 ; 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3DCA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22256 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.350 REMARK 200 RESOLUTION RANGE LOW (A) : 36.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : 0.08800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7160 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : 0.42600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, MAIN REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULPHATE, 0.1M NA REMARK 280 CACODILATE PH6.5, 30%PEG8K, , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 96.74750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 55.85720 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.61600 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 96.74750 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 55.85720 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.61600 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 96.74750 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 55.85720 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.61600 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 111.71439 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 79.23200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 111.71439 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 79.23200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 111.71439 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 79.23200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 143 LIES ON A SPECIAL POSITION. REMARK 375 O3 SO4 A 143 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 41 REMARK 465 ARG A 42 REMARK 465 GLY A 134 REMARK 465 LYS A 135 REMARK 465 GLY A 136 REMARK 465 PHE A 137 REMARK 465 GLY A 138 REMARK 465 GLU A 139 REMARK 465 ILE A 140 REMARK 465 PRO A 141 REMARK 465 THR A 142 REMARK 465 MSE B 1 REMARK 465 GLY B 41 REMARK 465 ARG B 42 REMARK 465 GLY B 134 REMARK 465 LYS B 135 REMARK 465 GLY B 136 REMARK 465 PHE B 137 REMARK 465 GLY B 138 REMARK 465 GLU B 139 REMARK 465 ILE B 140 REMARK 465 PRO B 141 REMARK 465 THR B 142 REMARK 465 MSE C 1 REMARK 465 GLY C 41 REMARK 465 ARG C 42 REMARK 465 GLY C 134 REMARK 465 LYS C 135 REMARK 465 GLY C 136 REMARK 465 PHE C 137 REMARK 465 GLY C 138 REMARK 465 GLU C 139 REMARK 465 ILE C 140 REMARK 465 PRO C 141 REMARK 465 THR C 142 REMARK 465 MSE D 1 REMARK 465 GLY D 41 REMARK 465 ARG D 42 REMARK 465 GLY D 134 REMARK 465 LYS D 135 REMARK 465 GLY D 136 REMARK 465 PHE D 137 REMARK 465 GLY D 138 REMARK 465 GLU D 139 REMARK 465 ILE D 140 REMARK 465 PRO D 141 REMARK 465 THR D 142 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 GLU A 10 CD OE1 OE2 REMARK 470 ARG A 20 CZ NH1 NH2 REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 40 CG OD1 OD2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 ARG A 55 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 56 CG OD1 OD2 REMARK 470 PHE A 61 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 GLN A 82 CG CD OE1 NE2 REMARK 470 ASP A 83 CG OD1 OD2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 ASP B 6 CG OD1 OD2 REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 GLU B 10 CD OE1 OE2 REMARK 470 VAL B 30 CG1 CG2 REMARK 470 ARG B 33 CD NE CZ NH1 NH2 REMARK 470 ARG B 35 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 43 CG CD OE1 OE2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 SER B 57 OG REMARK 470 PHE B 61 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 GLN B 82 CG CD OE1 NE2 REMARK 470 ASP B 83 CG OD1 OD2 REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 GLN B 117 CG CD OE1 NE2 REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 SER B 123 OG REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 ASP C 6 CG OD1 OD2 REMARK 470 LYS C 9 CG CD CE NZ REMARK 470 GLU C 10 CD OE1 OE2 REMARK 470 ARG C 16 CZ NH1 NH2 REMARK 470 ARG C 33 NH1 NH2 REMARK 470 ARG C 35 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 43 CG CD OE1 OE2 REMARK 470 THR C 44 OG1 CG2 REMARK 470 GLU C 48 CD OE1 OE2 REMARK 470 SER C 57 OG REMARK 470 PHE C 61 CD1 CD2 CE1 CE2 CZ REMARK 470 GLU C 62 CG CD OE1 OE2 REMARK 470 LYS C 67 CE NZ REMARK 470 GLN C 82 CG CD OE1 NE2 REMARK 470 ASP C 83 CG OD1 OD2 REMARK 470 GLU C 93 CD OE1 OE2 REMARK 470 VAL C 108 CG1 CG2 REMARK 470 ARG C 110 NE CZ NH1 NH2 REMARK 470 GLU C 111 CG CD OE1 OE2 REMARK 470 LYS C 114 CG CD CE NZ REMARK 470 GLN C 117 CG CD OE1 NE2 REMARK 470 GLU C 121 CG CD OE1 OE2 REMARK 470 LEU C 128 CD1 CD2 REMARK 470 LYS C 129 CG CD CE NZ REMARK 470 LYS C 132 CG CD CE NZ REMARK 470 THR D 2 OG1 CG2 REMARK 470 ASP D 6 CG OD1 OD2 REMARK 470 LYS D 9 CG CD CE NZ REMARK 470 GLU D 10 CD OE1 OE2 REMARK 470 LEU D 32 CG CD1 CD2 REMARK 470 ARG D 35 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 43 CG CD OE1 OE2 REMARK 470 THR D 44 OG1 CG2 REMARK 470 GLU D 48 CG CD OE1 OE2 REMARK 470 SER D 57 OG REMARK 470 PHE D 61 CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 62 CG CD OE1 OE2 REMARK 470 LYS D 67 CE NZ REMARK 470 GLN D 82 CG CD OE1 NE2 REMARK 470 ASP D 83 CG OD1 OD2 REMARK 470 GLU D 93 CD OE1 OE2 REMARK 470 ARG D 110 NE CZ NH1 NH2 REMARK 470 GLU D 111 CG CD OE1 OE2 REMARK 470 VAL D 113 CG1 CG2 REMARK 470 LYS D 114 CG CD CE NZ REMARK 470 GLN D 117 CG CD OE1 NE2 REMARK 470 SER D 123 OG REMARK 470 ARG D 127 CZ NH1 NH2 REMARK 470 LYS D 129 CG CD CE NZ REMARK 470 LYS D 132 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 35.75 35.55 REMARK 500 PRO A 39 167.55 -48.04 REMARK 500 MSE A 77 76.43 -107.49 REMARK 500 ASP B 19 35.12 35.20 REMARK 500 ARG B 20 150.74 -49.98 REMARK 500 PRO B 39 168.32 -47.46 REMARK 500 MSE B 77 79.21 -107.27 REMARK 500 ASP C 19 32.53 35.63 REMARK 500 ARG C 20 150.89 -48.78 REMARK 500 MSE C 77 79.28 -107.18 REMARK 500 ASP D 19 35.77 34.08 REMARK 500 PRO D 39 -177.76 -66.24 REMARK 500 MSE D 77 77.20 -107.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 38 PRO A 39 147.97 REMARK 500 TYR B 38 PRO B 39 149.03 REMARK 500 TYR C 38 PRO C 39 147.95 REMARK 500 TYR D 38 PRO D 39 148.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 144 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6229 RELATED DB: TARGETDB DBREF 3DCA A 1 142 UNP Q6NC90 Q6NC90_RHOPA 1 142 DBREF 3DCA B 1 142 UNP Q6NC90 Q6NC90_RHOPA 1 142 DBREF 3DCA C 1 142 UNP Q6NC90 Q6NC90_RHOPA 1 142 DBREF 3DCA D 1 142 UNP Q6NC90 Q6NC90_RHOPA 1 142 SEQRES 1 A 142 MSE THR GLY HIS ILE ASP PRO THR LYS GLU VAL PHE ALA SEQRES 2 A 142 GLN PHE ARG ALA ASN ASP ARG GLU GLY PRO ILE HIS MSE SEQRES 3 A 142 LEU ASN LEU VAL ARG LEU ARG PRO ARG ALA ALA TYR PRO SEQRES 4 A 142 ASP GLY ARG GLU THR THR GLY ALA GLU ALA TYR ALA ALA SEQRES 5 A 142 TYR GLY ARG ASP SER GLY PRO VAL PHE GLU ARG LEU GLY SEQRES 6 A 142 GLY LYS VAL VAL TRP GLN GLY GLN PHE GLU LEU MSE LEU SEQRES 7 A 142 ILE GLY PRO GLN ASP GLU HIS TRP ASP HIS VAL PHE ILE SEQRES 8 A 142 ALA GLU TYR PRO SER VAL ALA ALA PHE VAL GLU MSE ILE SEQRES 9 A 142 ARG ASP PRO VAL TYR ARG GLU ALA VAL LYS HIS ARG GLN SEQRES 10 A 142 ALA ALA VAL GLU ASP SER ARG LEU ILE ARG LEU LYS PRO SEQRES 11 A 142 LEU LYS PRO GLY LYS GLY PHE GLY GLU ILE PRO THR SEQRES 1 B 142 MSE THR GLY HIS ILE ASP PRO THR LYS GLU VAL PHE ALA SEQRES 2 B 142 GLN PHE ARG ALA ASN ASP ARG GLU GLY PRO ILE HIS MSE SEQRES 3 B 142 LEU ASN LEU VAL ARG LEU ARG PRO ARG ALA ALA TYR PRO SEQRES 4 B 142 ASP GLY ARG GLU THR THR GLY ALA GLU ALA TYR ALA ALA SEQRES 5 B 142 TYR GLY ARG ASP SER GLY PRO VAL PHE GLU ARG LEU GLY SEQRES 6 B 142 GLY LYS VAL VAL TRP GLN GLY GLN PHE GLU LEU MSE LEU SEQRES 7 B 142 ILE GLY PRO GLN ASP GLU HIS TRP ASP HIS VAL PHE ILE SEQRES 8 B 142 ALA GLU TYR PRO SER VAL ALA ALA PHE VAL GLU MSE ILE SEQRES 9 B 142 ARG ASP PRO VAL TYR ARG GLU ALA VAL LYS HIS ARG GLN SEQRES 10 B 142 ALA ALA VAL GLU ASP SER ARG LEU ILE ARG LEU LYS PRO SEQRES 11 B 142 LEU LYS PRO GLY LYS GLY PHE GLY GLU ILE PRO THR SEQRES 1 C 142 MSE THR GLY HIS ILE ASP PRO THR LYS GLU VAL PHE ALA SEQRES 2 C 142 GLN PHE ARG ALA ASN ASP ARG GLU GLY PRO ILE HIS MSE SEQRES 3 C 142 LEU ASN LEU VAL ARG LEU ARG PRO ARG ALA ALA TYR PRO SEQRES 4 C 142 ASP GLY ARG GLU THR THR GLY ALA GLU ALA TYR ALA ALA SEQRES 5 C 142 TYR GLY ARG ASP SER GLY PRO VAL PHE GLU ARG LEU GLY SEQRES 6 C 142 GLY LYS VAL VAL TRP GLN GLY GLN PHE GLU LEU MSE LEU SEQRES 7 C 142 ILE GLY PRO GLN ASP GLU HIS TRP ASP HIS VAL PHE ILE SEQRES 8 C 142 ALA GLU TYR PRO SER VAL ALA ALA PHE VAL GLU MSE ILE SEQRES 9 C 142 ARG ASP PRO VAL TYR ARG GLU ALA VAL LYS HIS ARG GLN SEQRES 10 C 142 ALA ALA VAL GLU ASP SER ARG LEU ILE ARG LEU LYS PRO SEQRES 11 C 142 LEU LYS PRO GLY LYS GLY PHE GLY GLU ILE PRO THR SEQRES 1 D 142 MSE THR GLY HIS ILE ASP PRO THR LYS GLU VAL PHE ALA SEQRES 2 D 142 GLN PHE ARG ALA ASN ASP ARG GLU GLY PRO ILE HIS MSE SEQRES 3 D 142 LEU ASN LEU VAL ARG LEU ARG PRO ARG ALA ALA TYR PRO SEQRES 4 D 142 ASP GLY ARG GLU THR THR GLY ALA GLU ALA TYR ALA ALA SEQRES 5 D 142 TYR GLY ARG ASP SER GLY PRO VAL PHE GLU ARG LEU GLY SEQRES 6 D 142 GLY LYS VAL VAL TRP GLN GLY GLN PHE GLU LEU MSE LEU SEQRES 7 D 142 ILE GLY PRO GLN ASP GLU HIS TRP ASP HIS VAL PHE ILE SEQRES 8 D 142 ALA GLU TYR PRO SER VAL ALA ALA PHE VAL GLU MSE ILE SEQRES 9 D 142 ARG ASP PRO VAL TYR ARG GLU ALA VAL LYS HIS ARG GLN SEQRES 10 D 142 ALA ALA VAL GLU ASP SER ARG LEU ILE ARG LEU LYS PRO SEQRES 11 D 142 LEU LYS PRO GLY LYS GLY PHE GLY GLU ILE PRO THR MODRES 3DCA MSE A 26 MET SELENOMETHIONINE MODRES 3DCA MSE A 77 MET SELENOMETHIONINE MODRES 3DCA MSE A 103 MET SELENOMETHIONINE MODRES 3DCA MSE B 26 MET SELENOMETHIONINE MODRES 3DCA MSE B 77 MET SELENOMETHIONINE MODRES 3DCA MSE B 103 MET SELENOMETHIONINE MODRES 3DCA MSE C 26 MET SELENOMETHIONINE MODRES 3DCA MSE C 77 MET SELENOMETHIONINE MODRES 3DCA MSE C 103 MET SELENOMETHIONINE MODRES 3DCA MSE D 26 MET SELENOMETHIONINE MODRES 3DCA MSE D 77 MET SELENOMETHIONINE MODRES 3DCA MSE D 103 MET SELENOMETHIONINE HET MSE A 26 8 HET MSE A 77 8 HET MSE A 103 8 HET MSE B 26 8 HET MSE B 77 8 HET MSE B 103 8 HET MSE C 26 8 HET MSE C 77 8 HET MSE C 103 8 HET MSE D 26 8 HET MSE D 77 8 HET MSE D 103 8 HET SO4 A 143 5 HET SO4 A 144 5 HET SO4 B 143 5 HET SO4 C 143 5 HET SO4 D 143 5 HET SO4 D 144 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 SO4 6(O4 S 2-) HELIX 1 1 THR A 8 ASP A 19 1 12 HELIX 2 2 THR A 45 GLY A 65 1 21 HELIX 3 3 SER A 96 ARG A 105 1 10 HELIX 4 4 ASP A 106 ALA A 119 1 14 HELIX 5 5 THR B 8 ASP B 19 1 12 HELIX 6 6 THR B 45 GLY B 65 1 21 HELIX 7 7 SER B 96 ARG B 105 1 10 HELIX 8 8 ASP B 106 ALA B 119 1 14 HELIX 9 9 THR C 8 ASP C 19 1 12 HELIX 10 10 THR C 45 GLY C 65 1 21 HELIX 11 11 SER C 96 ARG C 105 1 10 HELIX 12 12 ASP C 106 ALA C 119 1 14 HELIX 13 13 THR D 8 ASP D 19 1 12 HELIX 14 14 THR D 45 GLY D 65 1 21 HELIX 15 15 SER D 96 ARG D 105 1 10 HELIX 16 16 ASP D 106 ALA D 119 1 14 SHEET 1 A 9 ILE A 24 LEU A 32 0 SHEET 2 A 9 HIS A 88 TYR A 94 -1 O ALA A 92 N MSE A 26 SHEET 3 A 9 LYS A 67 ILE A 79 -1 N LYS A 67 O GLU A 93 SHEET 4 A 9 VAL B 120 PRO B 130 -1 O ARG B 127 N GLU A 75 SHEET 5 A 9 ILE B 24 LEU B 32 -1 N LEU B 29 O ARG B 124 SHEET 6 A 9 HIS B 88 TYR B 94 -1 O ALA B 92 N MSE B 26 SHEET 7 A 9 LYS B 67 ILE B 79 -1 N LYS B 67 O GLU B 93 SHEET 8 A 9 VAL A 120 PRO A 130 -1 N ARG A 127 O LEU B 76 SHEET 9 A 9 ILE A 24 LEU A 32 -1 N LEU A 29 O ARG A 124 SHEET 1 B 4 LYS C 67 GLY C 72 0 SHEET 2 B 4 HIS C 88 TYR C 94 -1 O GLU C 93 N LYS C 67 SHEET 3 B 4 ILE C 24 LEU C 32 -1 N MSE C 26 O ALA C 92 SHEET 4 B 4 VAL C 120 LEU C 128 -1 O ARG C 124 N LEU C 29 SHEET 1 C 4 LYS D 67 GLY D 72 0 SHEET 2 C 4 HIS D 88 TYR D 94 -1 O GLU D 93 N LYS D 67 SHEET 3 C 4 ILE D 24 LEU D 32 -1 N MSE D 26 O ALA D 92 SHEET 4 C 4 VAL D 120 LEU D 128 -1 O ARG D 124 N LEU D 29 LINK C HIS A 25 N MSE A 26 1555 1555 1.32 LINK C MSE A 26 N LEU A 27 1555 1555 1.33 LINK C LEU A 76 N MSE A 77 1555 1555 1.33 LINK C MSE A 77 N LEU A 78 1555 1555 1.33 LINK C GLU A 102 N MSE A 103 1555 1555 1.33 LINK C MSE A 103 N ILE A 104 1555 1555 1.33 LINK C HIS B 25 N MSE B 26 1555 1555 1.33 LINK C MSE B 26 N LEU B 27 1555 1555 1.33 LINK C LEU B 76 N MSE B 77 1555 1555 1.33 LINK C MSE B 77 N LEU B 78 1555 1555 1.33 LINK C GLU B 102 N MSE B 103 1555 1555 1.33 LINK C MSE B 103 N ILE B 104 1555 1555 1.33 LINK C HIS C 25 N MSE C 26 1555 1555 1.32 LINK C MSE C 26 N LEU C 27 1555 1555 1.33 LINK C LEU C 76 N MSE C 77 1555 1555 1.33 LINK C MSE C 77 N LEU C 78 1555 1555 1.33 LINK C GLU C 102 N MSE C 103 1555 1555 1.33 LINK C MSE C 103 N ILE C 104 1555 1555 1.33 LINK C HIS D 25 N MSE D 26 1555 1555 1.32 LINK C MSE D 26 N LEU D 27 1555 1555 1.33 LINK C LEU D 76 N MSE D 77 1555 1555 1.33 LINK C MSE D 77 N LEU D 78 1555 1555 1.33 LINK C GLU D 102 N MSE D 103 1555 1555 1.33 LINK C MSE D 103 N ILE D 104 1555 1555 1.33 SITE 1 AC1 1 ARG A 105 SITE 1 AC2 3 ARG B 105 ARG C 105 ARG D 105 SITE 1 AC3 6 ILE A 79 TYR B 53 ILE B 104 TYR B 109 SITE 2 AC3 6 ARG B 116 LEU B 125 SITE 1 AC4 5 TYR C 53 ILE C 104 TYR C 109 ARG C 116 SITE 2 AC4 5 ILE D 79 SITE 1 AC5 3 TYR A 53 TYR A 109 ARG A 116 SITE 1 AC6 7 ILE C 79 PRO D 7 TYR D 53 ILE D 104 SITE 2 AC6 7 TYR D 109 ARG D 116 LEU D 125 CRYST1 193.495 193.495 118.848 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005170 0.002980 0.000000 0.00000 SCALE2 0.000000 0.005970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008410 0.00000