HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-JUN-08 3DCD TITLE X-RAY STRUCTURE OF THE GALACTOSE MUTAROTASE RELATED ENZYME Q5FKD7 FROM TITLE 2 LACTOBACILLUS ACIDOPHILUS AT THE RESOLUTION 1.9A. NORTHEAST TITLE 3 STRUCTURAL GENOMICS CONSORTIUM TARGET LAR33. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOSE MUTAROTASE RELATED ENZYME; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS ACIDOPHILUS; SOURCE 3 ORGANISM_TAXID: 1579 KEYWDS Q5FKD7 LAR33 NESG X-RAY, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.P.KUZIN,S.LEW,S.M.VOROBIEV,J.SEETHARAMAN,H.WANG,L.MAO,E.L.FOOTE, AUTHOR 2 R.XIAO,R.NAIR,M.C.BARAN,T.B.ACTON,B.ROST,G.T.MONTELIONE,J.F.HUNT, AUTHOR 3 L.TONG,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 30-OCT-24 3DCD 1 REMARK LINK REVDAT 4 25-OCT-17 3DCD 1 REMARK REVDAT 3 13-JUL-11 3DCD 1 VERSN REVDAT 2 24-FEB-09 3DCD 1 VERSN REVDAT 1 29-JUL-08 3DCD 0 JRNL AUTH A.P.KUZIN,S.LEW,S.M.VOROBIEV,J.SEETHARAMAN,H.WANG,L.MAO, JRNL AUTH 2 E.L.FOOTE,R.XIAO,R.NAIR,M.C.BARAN,T.B.ACTON,B.ROST, JRNL AUTH 3 G.T.MONTELIONE,J.F.HUNT,L.TONG JRNL TITL X-RAY STRUCTURE OF THE GALACTOSE MUTAROTASE RELATED ENZYME JRNL TITL 2 Q5FKD7 FROM LACTOBACILLUS ACIDOPHILUS AT THE RESOLUTION JRNL TITL 3 1.9A. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LAR33. JRNL TITL 4 (CASP TARGET) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2590 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2924 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4918 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 487 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.454 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5070 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6877 ; 1.302 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 602 ; 6.843 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 279 ;36.262 ;24.695 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 844 ;11.884 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.531 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 708 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3992 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2206 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3433 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 445 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.168 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.111 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3093 ; 0.845 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4852 ; 1.181 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2288 ; 2.355 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2023 ; 3.380 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 308 B 550 REMARK 3 RESIDUE RANGE : A 308 A 551 REMARK 3 RESIDUE RANGE : B 1 B 300 REMARK 3 RESIDUE RANGE : A 1 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3780 42.0660 77.5764 REMARK 3 T TENSOR REMARK 3 T11: -0.0754 T22: -0.0737 REMARK 3 T33: -0.0401 T12: -0.0045 REMARK 3 T13: -0.0072 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 0.3341 L22: 0.3557 REMARK 3 L33: 1.0323 L12: 0.0766 REMARK 3 L13: -0.1627 L23: -0.2685 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: -0.0213 S13: 0.0803 REMARK 3 S21: 0.0257 S22: 0.0029 S23: 0.0666 REMARK 3 S31: -0.0607 S32: 0.0146 S33: -0.0062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99285 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M KNO3, 0.1M TRIS HCL, 24% PEG8K, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.63500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.77000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.13500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.77000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.63500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.13500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 GLU B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MSE A 9 CA CB CG SE CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 9 CG MSE A 9 SE -0.232 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 42 107.62 -162.12 REMARK 500 ALA A 46 63.63 -168.58 REMARK 500 PHE A 50 139.67 -174.26 REMARK 500 TYR A 105 100.23 -160.68 REMARK 500 ASN A 119 -131.32 52.05 REMARK 500 HIS A 143 43.13 -154.27 REMARK 500 ASP A 203 -166.45 74.38 REMARK 500 ASN A 223 -167.82 -164.51 REMARK 500 HIS A 226 116.06 -160.55 REMARK 500 ARG A 232 -124.88 47.33 REMARK 500 TRP A 256 58.36 -113.77 REMARK 500 ILE B 41 -62.28 -120.78 REMARK 500 ALA B 46 60.35 -168.86 REMARK 500 PHE B 50 139.39 -176.99 REMARK 500 ASN B 119 -130.55 53.97 REMARK 500 HIS B 143 41.15 -153.83 REMARK 500 HIS B 152 50.83 -140.94 REMARK 500 ASP B 203 -163.91 75.20 REMARK 500 ASN B 223 -161.56 -161.49 REMARK 500 ARG B 232 -125.85 53.15 REMARK 500 TRP B 256 60.44 -115.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: LAR33 RELATED DB: TARGETDB DBREF 3DCD A 1 299 UNP Q5FKD7 Q5FKD7_LACAC 1 299 DBREF 3DCD B 1 299 UNP Q5FKD7 Q5FKD7_LACAC 1 299 SEQADV 3DCD LEU A 300 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD GLU A 301 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD HIS A 302 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD HIS A 303 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD HIS A 304 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD HIS A 305 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD HIS A 306 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD HIS A 307 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD LEU B 300 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD GLU B 301 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD HIS B 302 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD HIS B 303 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD HIS B 304 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD HIS B 305 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD HIS B 306 UNP Q5FKD7 EXPRESSION TAG SEQADV 3DCD HIS B 307 UNP Q5FKD7 EXPRESSION TAG SEQRES 1 A 307 MSE ASP TYR THR ILE GLU ASN ASN MSE ILE LYS VAL VAL SEQRES 2 A 307 ILE SER ASP HIS GLY ALA GLU ILE GLN SER VAL LYS SER SEQRES 3 A 307 ALA HIS THR ASP GLU GLU PHE MSE TRP GLN ALA ASN PRO SEQRES 4 A 307 GLU ILE TRP GLY ARG HIS ALA PRO VAL LEU PHE PRO ILE SEQRES 5 A 307 VAL GLY ARG LEU LYS ASN ASP GLU TYR THR TYR LYS GLY SEQRES 6 A 307 LYS THR TYR HIS LEU GLY GLN HIS GLY PHE ALA ARG ASN SEQRES 7 A 307 ALA ASP PHE GLU VAL GLU ASN HIS THR LYS GLU SER ILE SEQRES 8 A 307 THR PHE LEU LEU LYS ASP ASN GLU GLU THR ARG LYS VAL SEQRES 9 A 307 TYR PRO PHE LYS PHE GLU PHE ARG VAL ASN TYR ASN LEU SEQRES 10 A 307 MSE ASN ASN LEU LEU GLU GLU ASN PHE SER VAL VAL ASN SEQRES 11 A 307 LYS SER ASP GLU THR MSE ILE PHE GLY VAL GLY GLY HIS SEQRES 12 A 307 PRO GLY PHE ASN LEU PRO THR ASP HIS GLY GLU ASN LYS SEQRES 13 A 307 GLU ASP PHE TYR PHE ASP MSE HIS PRO SER VAL THR ARG SEQRES 14 A 307 VAL ARG ILE PRO LEU LYS ASP ALA SER LEU ASP TRP ASN SEQRES 15 A 307 ASN ARG SER LEU ALA PRO THR ASP SER LEU ILE ALA LEU SEQRES 16 A 307 SER ASP ASP LEU PHE LYS ASP ASP ALA LEU ILE TYR GLU SEQRES 17 A 307 LEU ARG GLY ASN ASP ASN LYS VAL SER LEU ARG THR ASP SEQRES 18 A 307 LYS ASN LYS PHE HIS VAL ASN VAL TRP THR ARG ASP ALA SEQRES 19 A 307 PRO PHE VAL GLY ILE TRP SER GLN TYR PRO LYS THR ASP SEQRES 20 A 307 ASN TYR VAL CYS ILE GLU PRO TRP TRP GLY ILE ALA ASP SEQRES 21 A 307 ARG ASP ASP ALA ASP GLY ASP LEU GLU HIS LYS TYR GLY SEQRES 22 A 307 MSE ASN HIS LEU LYS PRO GLY LYS GLU PHE GLN ALA GLY SEQRES 23 A 307 PHE SER MSE THR TYR HIS SER THR THR ASP GLU VAL LYS SEQRES 24 A 307 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 307 MSE ASP TYR THR ILE GLU ASN ASN MSE ILE LYS VAL VAL SEQRES 2 B 307 ILE SER ASP HIS GLY ALA GLU ILE GLN SER VAL LYS SER SEQRES 3 B 307 ALA HIS THR ASP GLU GLU PHE MSE TRP GLN ALA ASN PRO SEQRES 4 B 307 GLU ILE TRP GLY ARG HIS ALA PRO VAL LEU PHE PRO ILE SEQRES 5 B 307 VAL GLY ARG LEU LYS ASN ASP GLU TYR THR TYR LYS GLY SEQRES 6 B 307 LYS THR TYR HIS LEU GLY GLN HIS GLY PHE ALA ARG ASN SEQRES 7 B 307 ALA ASP PHE GLU VAL GLU ASN HIS THR LYS GLU SER ILE SEQRES 8 B 307 THR PHE LEU LEU LYS ASP ASN GLU GLU THR ARG LYS VAL SEQRES 9 B 307 TYR PRO PHE LYS PHE GLU PHE ARG VAL ASN TYR ASN LEU SEQRES 10 B 307 MSE ASN ASN LEU LEU GLU GLU ASN PHE SER VAL VAL ASN SEQRES 11 B 307 LYS SER ASP GLU THR MSE ILE PHE GLY VAL GLY GLY HIS SEQRES 12 B 307 PRO GLY PHE ASN LEU PRO THR ASP HIS GLY GLU ASN LYS SEQRES 13 B 307 GLU ASP PHE TYR PHE ASP MSE HIS PRO SER VAL THR ARG SEQRES 14 B 307 VAL ARG ILE PRO LEU LYS ASP ALA SER LEU ASP TRP ASN SEQRES 15 B 307 ASN ARG SER LEU ALA PRO THR ASP SER LEU ILE ALA LEU SEQRES 16 B 307 SER ASP ASP LEU PHE LYS ASP ASP ALA LEU ILE TYR GLU SEQRES 17 B 307 LEU ARG GLY ASN ASP ASN LYS VAL SER LEU ARG THR ASP SEQRES 18 B 307 LYS ASN LYS PHE HIS VAL ASN VAL TRP THR ARG ASP ALA SEQRES 19 B 307 PRO PHE VAL GLY ILE TRP SER GLN TYR PRO LYS THR ASP SEQRES 20 B 307 ASN TYR VAL CYS ILE GLU PRO TRP TRP GLY ILE ALA ASP SEQRES 21 B 307 ARG ASP ASP ALA ASP GLY ASP LEU GLU HIS LYS TYR GLY SEQRES 22 B 307 MSE ASN HIS LEU LYS PRO GLY LYS GLU PHE GLN ALA GLY SEQRES 23 B 307 PHE SER MSE THR TYR HIS SER THR THR ASP GLU VAL LYS SEQRES 24 B 307 LEU GLU HIS HIS HIS HIS HIS HIS MODRES 3DCD MSE A 1 MET SELENOMETHIONINE MODRES 3DCD MSE A 9 MET SELENOMETHIONINE MODRES 3DCD MSE A 34 MET SELENOMETHIONINE MODRES 3DCD MSE A 118 MET SELENOMETHIONINE MODRES 3DCD MSE A 136 MET SELENOMETHIONINE MODRES 3DCD MSE A 163 MET SELENOMETHIONINE MODRES 3DCD MSE A 274 MET SELENOMETHIONINE MODRES 3DCD MSE A 289 MET SELENOMETHIONINE MODRES 3DCD MSE B 1 MET SELENOMETHIONINE MODRES 3DCD MSE B 9 MET SELENOMETHIONINE MODRES 3DCD MSE B 34 MET SELENOMETHIONINE MODRES 3DCD MSE B 118 MET SELENOMETHIONINE MODRES 3DCD MSE B 136 MET SELENOMETHIONINE MODRES 3DCD MSE B 163 MET SELENOMETHIONINE MODRES 3DCD MSE B 274 MET SELENOMETHIONINE MODRES 3DCD MSE B 289 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 9 13 HET MSE A 34 8 HET MSE A 118 13 HET MSE A 136 8 HET MSE A 163 8 HET MSE A 274 8 HET MSE A 289 8 HET MSE B 1 8 HET MSE B 9 8 HET MSE B 34 8 HET MSE B 118 8 HET MSE B 136 8 HET MSE B 163 8 HET MSE B 274 8 HET MSE B 289 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 HOH *487(H2 O) HELIX 1 1 LEU A 56 ASN A 58 5 3 HELIX 2 2 PHE A 75 ALA A 79 5 5 HELIX 3 3 ASN A 98 TYR A 105 1 8 HELIX 4 4 ASN A 155 GLU A 157 5 3 HELIX 5 5 TRP A 181 ARG A 184 5 4 HELIX 6 6 ASP A 197 LYS A 201 5 5 HELIX 7 7 ASP A 267 LYS A 271 5 5 HELIX 8 8 LEU B 56 ASN B 58 5 3 HELIX 9 9 PHE B 75 ALA B 79 5 5 HELIX 10 10 ASN B 98 TYR B 105 1 8 HELIX 11 11 ASN B 155 GLU B 157 5 3 HELIX 12 12 TRP B 181 ARG B 184 5 4 HELIX 13 13 ASP B 197 LYS B 201 5 5 HELIX 14 14 ASP B 267 LYS B 271 5 5 SHEET 1 A 3 ASP A 2 GLU A 6 0 SHEET 2 A 3 ILE A 10 SER A 15 -1 O ILE A 14 N TYR A 3 SHEET 3 A 3 GLU A 20 SER A 26 -1 O GLN A 22 N VAL A 13 SHEET 1 B 4 VAL A 48 LEU A 49 0 SHEET 2 B 4 VAL A 140 GLY A 142 -1 O GLY A 141 N LEU A 49 SHEET 3 B 4 TYR A 249 TRP A 256 -1 O TRP A 256 N VAL A 140 SHEET 4 B 4 GLY A 145 ASN A 147 -1 N PHE A 146 O VAL A 250 SHEET 1 C 5 VAL A 48 LEU A 49 0 SHEET 2 C 5 VAL A 140 GLY A 142 -1 O GLY A 141 N LEU A 49 SHEET 3 C 5 TYR A 249 TRP A 256 -1 O TRP A 256 N VAL A 140 SHEET 4 C 5 PHE A 236 TRP A 240 -1 N GLY A 238 O GLU A 253 SHEET 5 C 5 LEU A 205 GLU A 208 -1 N LEU A 205 O ILE A 239 SHEET 1 D 2 GLU A 60 TYR A 63 0 SHEET 2 D 2 LYS A 66 HIS A 69 -1 O TYR A 68 N TYR A 61 SHEET 1 E 9 GLU A 82 THR A 87 0 SHEET 2 E 9 SER A 90 LYS A 96 -1 O LEU A 94 N GLU A 82 SHEET 3 E 9 PHE A 109 MSE A 118 -1 O PHE A 111 N LEU A 95 SHEET 4 E 9 LEU A 121 ASN A 130 -1 O ASN A 125 N ASN A 114 SHEET 5 E 9 GLU A 282 HIS A 292 -1 O ALA A 285 N PHE A 126 SHEET 6 E 9 HIS A 226 ARG A 232 -1 N TRP A 230 O SER A 288 SHEET 7 E 9 ASN A 214 THR A 220 -1 N LEU A 218 O VAL A 227 SHEET 8 E 9 PHE A 159 HIS A 164 -1 N ASP A 162 O SER A 217 SHEET 9 E 9 ILE A 193 ALA A 194 -1 O ILE A 193 N PHE A 161 SHEET 1 F 2 MSE A 136 PHE A 138 0 SHEET 2 F 2 ASN A 275 LEU A 277 -1 O ASN A 275 N PHE A 138 SHEET 1 G 2 ARG A 169 ARG A 171 0 SHEET 2 G 2 SER A 185 ALA A 187 -1 O ALA A 187 N ARG A 169 SHEET 1 H 2 LEU A 174 LYS A 175 0 SHEET 2 H 2 SER A 178 LEU A 179 -1 O SER A 178 N LYS A 175 SHEET 1 I 3 ASP B 2 GLU B 6 0 SHEET 2 I 3 ILE B 10 SER B 15 -1 O VAL B 12 N ILE B 5 SHEET 3 I 3 GLU B 20 SER B 26 -1 O GLN B 22 N VAL B 13 SHEET 1 J 4 VAL B 48 LEU B 49 0 SHEET 2 J 4 VAL B 140 GLY B 142 -1 O GLY B 141 N LEU B 49 SHEET 3 J 4 TYR B 249 TRP B 256 -1 O TRP B 256 N VAL B 140 SHEET 4 J 4 GLY B 145 ASN B 147 -1 N PHE B 146 O VAL B 250 SHEET 1 K 5 VAL B 48 LEU B 49 0 SHEET 2 K 5 VAL B 140 GLY B 142 -1 O GLY B 141 N LEU B 49 SHEET 3 K 5 TYR B 249 TRP B 256 -1 O TRP B 256 N VAL B 140 SHEET 4 K 5 PHE B 236 TRP B 240 -1 N TRP B 240 O CYS B 251 SHEET 5 K 5 LEU B 205 GLU B 208 -1 N LEU B 205 O ILE B 239 SHEET 1 L 2 GLU B 60 TYR B 63 0 SHEET 2 L 2 LYS B 66 HIS B 69 -1 O TYR B 68 N TYR B 61 SHEET 1 M 9 GLU B 82 THR B 87 0 SHEET 2 M 9 SER B 90 LYS B 96 -1 O SER B 90 N THR B 87 SHEET 3 M 9 PHE B 109 MSE B 118 -1 O VAL B 113 N PHE B 93 SHEET 4 M 9 LEU B 121 ASN B 130 -1 O SER B 127 N ARG B 112 SHEET 5 M 9 GLU B 282 HIS B 292 -1 O ALA B 285 N PHE B 126 SHEET 6 M 9 HIS B 226 ARG B 232 -1 N TRP B 230 O SER B 288 SHEET 7 M 9 ASN B 214 THR B 220 -1 N LEU B 218 O VAL B 227 SHEET 8 M 9 PHE B 159 HIS B 164 -1 N ASP B 162 O SER B 217 SHEET 9 M 9 ILE B 193 ALA B 194 -1 O ILE B 193 N PHE B 161 SHEET 1 N 2 MSE B 136 PHE B 138 0 SHEET 2 N 2 ASN B 275 LEU B 277 -1 O ASN B 275 N PHE B 138 SHEET 1 O 2 ARG B 169 ARG B 171 0 SHEET 2 O 2 SER B 185 ALA B 187 -1 O SER B 185 N ARG B 171 SHEET 1 P 2 LEU B 174 LYS B 175 0 SHEET 2 P 2 SER B 178 LEU B 179 -1 O SER B 178 N LYS B 175 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C ASN A 8 N MSE A 9 1555 1555 1.34 LINK C MSE A 9 N ILE A 10 1555 1555 1.34 LINK C PHE A 33 N MSE A 34 1555 1555 1.33 LINK C MSE A 34 N TRP A 35 1555 1555 1.33 LINK C LEU A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N ASN A 119 1555 1555 1.33 LINK C THR A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N ILE A 137 1555 1555 1.33 LINK C ASP A 162 N MSE A 163 1555 1555 1.32 LINK C MSE A 163 N HIS A 164 1555 1555 1.33 LINK C GLY A 273 N MSE A 274 1555 1555 1.33 LINK C MSE A 274 N ASN A 275 1555 1555 1.33 LINK C SER A 288 N MSE A 289 1555 1555 1.33 LINK C MSE A 289 N THR A 290 1555 1555 1.33 LINK C MSE B 1 N ASP B 2 1555 1555 1.34 LINK C ASN B 8 N MSE B 9 1555 1555 1.33 LINK C MSE B 9 N ILE B 10 1555 1555 1.33 LINK C PHE B 33 N MSE B 34 1555 1555 1.33 LINK C MSE B 34 N TRP B 35 1555 1555 1.33 LINK C LEU B 117 N MSE B 118 1555 1555 1.33 LINK C MSE B 118 N ASN B 119 1555 1555 1.33 LINK C THR B 135 N MSE B 136 1555 1555 1.33 LINK C MSE B 136 N ILE B 137 1555 1555 1.33 LINK C ASP B 162 N MSE B 163 1555 1555 1.32 LINK C MSE B 163 N HIS B 164 1555 1555 1.33 LINK C GLY B 273 N MSE B 274 1555 1555 1.34 LINK C MSE B 274 N ASN B 275 1555 1555 1.32 LINK C SER B 288 N MSE B 289 1555 1555 1.33 LINK C MSE B 289 N THR B 290 1555 1555 1.33 CISPEP 1 PHE A 50 PRO A 51 0 2.27 CISPEP 2 HIS A 164 PRO A 165 0 -3.36 CISPEP 3 TYR A 243 PRO A 244 0 1.97 CISPEP 4 PHE B 50 PRO B 51 0 1.64 CISPEP 5 HIS B 164 PRO B 165 0 0.86 CISPEP 6 TYR B 243 PRO B 244 0 1.75 CRYST1 53.270 88.270 139.540 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018772 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007166 0.00000 HETATM 1 N MSE A 1 6.508 36.165 111.371 1.00 19.83 N HETATM 2 CA MSE A 1 5.195 35.490 111.172 1.00 20.94 C HETATM 3 C MSE A 1 5.160 34.807 109.800 1.00 19.76 C HETATM 4 O MSE A 1 5.607 35.391 108.819 1.00 19.21 O HETATM 5 CB MSE A 1 4.054 36.505 111.275 1.00 22.01 C HETATM 6 CG MSE A 1 2.699 35.945 110.853 1.00 24.46 C HETATM 7 SE MSE A 1 2.136 34.473 112.027 1.00 35.22 SE HETATM 8 CE MSE A 1 1.135 33.328 110.794 1.00 30.92 C