HEADER TRANSCRIPTION REGULATOR 03-JUN-08 3DCF TITLE CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR OF THE TETR/ACRR FAMILY TITLE 2 (YP_290855.1) FROM THERMOBIFIDA FUSCA YX-ER1 AT 2.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR OF THE TETR/ACRR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA YX; SOURCE 3 ORGANISM_TAXID: 269800; SOURCE 4 GENE: YP_290855.1, TFU_2799; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_290855.1, TRANSCRIPTIONAL REGULATOR OF THE TETR/ACRR FAMILY, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, DNA-BINDING, TRANSCRIPTION, KEYWDS 4 TRANSCRIPTION REGULATION, BACTERIAL REGULATORY PROTEINS, TETR KEYWDS 5 FAMILY, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 30-OCT-24 3DCF 1 REMARK REVDAT 5 01-FEB-23 3DCF 1 SEQADV REVDAT 4 24-JUL-19 3DCF 1 REMARK LINK REVDAT 3 25-OCT-17 3DCF 1 REMARK REVDAT 2 24-FEB-09 3DCF 1 VERSN REVDAT 1 15-JUL-08 3DCF 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR OF THE JRNL TITL 2 TETR/ACRR FAMILY (YP_290855.1) FROM THERMOBIFIDA FUSCA JRNL TITL 3 YX-ER1 AT 2.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 15414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 772 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 974 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2967 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.78000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.691 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.260 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.675 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3037 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2090 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4121 ; 1.438 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5025 ; 1.284 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 3.086 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;30.887 ;22.418 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;12.450 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ; 9.972 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3387 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 677 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 592 ; 0.150 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1813 ; 0.118 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1426 ; 0.144 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1400 ; 0.069 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 90 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.055 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.098 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.055 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2327 ; 0.846 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 743 ; 0.135 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2958 ; 1.144 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1367 ; 2.317 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1161 ; 3.259 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 30 A 215 1 REMARK 3 1 B 30 B 215 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2447 ; 0.020 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 2447 ; 0.040 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 4 REMARK 4 3DCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97968,0.97917,0.91837 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HO RIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15426 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.074 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31.0% 2-METHYL-2,4-PENTANEDIOL, 0.2M REMARK 280 SODIUM CHLORIDE, 0.1M TRIS PH 7.0, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.81000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUPPORTS THE REMARK 300 ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 3 REMARK 465 ARG A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 ASP A 8 REMARK 465 HIS A 9 REMARK 465 VAL A 10 REMARK 465 MSE A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 ALA A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 ASP A 17 REMARK 465 LYS A 18 REMARK 465 ARG A 19 REMARK 465 GLN A 20 REMARK 465 GLY A 21 REMARK 465 HIS A 22 REMARK 465 THR A 23 REMARK 465 ARG A 24 REMARK 465 GLY A 25 REMARK 465 ARG A 26 REMARK 465 THR A 27 REMARK 465 GLY A 28 REMARK 465 GLU A 131 REMARK 465 ARG A 132 REMARK 465 GLY A 133 REMARK 465 LEU A 134 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 GLN B 3 REMARK 465 ARG B 4 REMARK 465 SER B 5 REMARK 465 ASP B 6 REMARK 465 SER B 7 REMARK 465 ASP B 8 REMARK 465 HIS B 9 REMARK 465 VAL B 10 REMARK 465 MSE B 11 REMARK 465 ALA B 12 REMARK 465 GLU B 13 REMARK 465 ALA B 14 REMARK 465 THR B 15 REMARK 465 THR B 16 REMARK 465 ASP B 17 REMARK 465 LYS B 18 REMARK 465 ARG B 19 REMARK 465 GLN B 20 REMARK 465 GLY B 21 REMARK 465 HIS B 22 REMARK 465 THR B 23 REMARK 465 ARG B 24 REMARK 465 GLY B 25 REMARK 465 ARG B 26 REMARK 465 THR B 27 REMARK 465 GLY B 28 REMARK 465 GLU B 131 REMARK 465 ARG B 132 REMARK 465 GLY B 133 REMARK 465 LEU B 134 REMARK 465 PRO B 216 REMARK 465 ALA B 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 31 NH1 NH2 REMARK 470 GLN A 34 CD OE1 NE2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 59 CD NE CZ NH1 NH2 REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 GLU B 41 CD OE1 OE2 REMARK 470 ASN B 130 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 44 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -71.02 -62.54 REMARK 500 ASP B 30 -73.10 -58.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390257 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE DNA REMARK 999 SEQUENCING OF THE CLONED CONSTRUCT SHOWS A LEUCINE AT POSITION 127 REMARK 999 INSTEAD OF A VALINE. THE LEUCINE AT POSITION 127 IS SUPPORTED BY REMARK 999 THE ELECTRON DENSITY. DBREF 3DCF A 1 217 UNP Q47L40 Q47L40_THEFY 1 217 DBREF 3DCF B 1 217 UNP Q47L40 Q47L40_THEFY 1 217 SEQADV 3DCF GLY A 0 UNP Q47L40 EXPRESSION TAG SEQADV 3DCF LEU A 127 UNP Q47L40 VAL 127 SEE REMARK 999 SEQADV 3DCF GLY B 0 UNP Q47L40 EXPRESSION TAG SEQADV 3DCF LEU B 127 UNP Q47L40 VAL 127 SEE REMARK 999 SEQRES 1 A 218 GLY MSE GLY GLN ARG SER ASP SER ASP HIS VAL MSE ALA SEQRES 2 A 218 GLU ALA THR THR ASP LYS ARG GLN GLY HIS THR ARG GLY SEQRES 3 A 218 ARG THR GLY ASN ASP ARG ARG THR GLN ILE ILE LYS VAL SEQRES 4 A 218 ALA THR GLU LEU PHE ARG GLU LYS GLY TYR TYR ALA THR SEQRES 5 A 218 SER LEU ASP ASP ILE ALA ASP ARG ILE GLY PHE THR LYS SEQRES 6 A 218 PRO ALA ILE TYR TYR TYR PHE LYS SER LYS GLU ASP VAL SEQRES 7 A 218 LEU PHE ALA ILE VAL ASN SER ILE VAL ASP GLU ALA LEU SEQRES 8 A 218 GLU ARG PHE HIS ALA ILE ALA ALA GLY PRO GLY SER PRO SEQRES 9 A 218 GLY GLU ARG ILE HIS ALA LEU LEU VAL GLU HIS THR ARG SEQRES 10 A 218 THR ILE LEU ARG ASN LEU ASP ALA ASN THR LEU PHE TYR SEQRES 11 A 218 ASN GLU ARG GLY LEU LEU SER PRO GLU ARG GLU ARG GLU SEQRES 12 A 218 MSE ARG LYS ARG GLU ARG GLU TYR THR GLU ILE MSE GLN SEQRES 13 A 218 ARG LEU TYR ALA GLU GLY VAL ALA THR GLY GLU LEU LEU SEQRES 14 A 218 ASP VAL ASP PRO THR VAL ALA THR ALA THR LEU LEU GLY SEQRES 15 A 218 ALA ALA ILE TRP THR TYR ARG TRP TYR ASP PRO GLU GLY SEQRES 16 A 218 ARG LEU SER ALA ASP GLU VAL VAL GLU GLN ILE THR ARG SEQRES 17 A 218 LEU LEU LEU ASN GLY TYR ARG ARG PRO ALA SEQRES 1 B 218 GLY MSE GLY GLN ARG SER ASP SER ASP HIS VAL MSE ALA SEQRES 2 B 218 GLU ALA THR THR ASP LYS ARG GLN GLY HIS THR ARG GLY SEQRES 3 B 218 ARG THR GLY ASN ASP ARG ARG THR GLN ILE ILE LYS VAL SEQRES 4 B 218 ALA THR GLU LEU PHE ARG GLU LYS GLY TYR TYR ALA THR SEQRES 5 B 218 SER LEU ASP ASP ILE ALA ASP ARG ILE GLY PHE THR LYS SEQRES 6 B 218 PRO ALA ILE TYR TYR TYR PHE LYS SER LYS GLU ASP VAL SEQRES 7 B 218 LEU PHE ALA ILE VAL ASN SER ILE VAL ASP GLU ALA LEU SEQRES 8 B 218 GLU ARG PHE HIS ALA ILE ALA ALA GLY PRO GLY SER PRO SEQRES 9 B 218 GLY GLU ARG ILE HIS ALA LEU LEU VAL GLU HIS THR ARG SEQRES 10 B 218 THR ILE LEU ARG ASN LEU ASP ALA ASN THR LEU PHE TYR SEQRES 11 B 218 ASN GLU ARG GLY LEU LEU SER PRO GLU ARG GLU ARG GLU SEQRES 12 B 218 MSE ARG LYS ARG GLU ARG GLU TYR THR GLU ILE MSE GLN SEQRES 13 B 218 ARG LEU TYR ALA GLU GLY VAL ALA THR GLY GLU LEU LEU SEQRES 14 B 218 ASP VAL ASP PRO THR VAL ALA THR ALA THR LEU LEU GLY SEQRES 15 B 218 ALA ALA ILE TRP THR TYR ARG TRP TYR ASP PRO GLU GLY SEQRES 16 B 218 ARG LEU SER ALA ASP GLU VAL VAL GLU GLN ILE THR ARG SEQRES 17 B 218 LEU LEU LEU ASN GLY TYR ARG ARG PRO ALA MODRES 3DCF MSE A 143 MET SELENOMETHIONINE MODRES 3DCF MSE A 154 MET SELENOMETHIONINE MODRES 3DCF MSE B 143 MET SELENOMETHIONINE MODRES 3DCF MSE B 154 MET SELENOMETHIONINE HET MSE A 143 8 HET MSE A 154 8 HET MSE B 143 8 HET MSE B 154 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *71(H2 O) HELIX 1 1 ASN A 29 LYS A 46 1 18 HELIX 2 2 SER A 52 GLY A 61 1 10 HELIX 3 3 THR A 63 PHE A 71 1 9 HELIX 4 4 SER A 73 ALA A 98 1 26 HELIX 5 5 SER A 102 ASN A 121 1 20 HELIX 6 6 ASN A 121 ASN A 130 1 10 HELIX 7 7 SER A 136 THR A 164 1 29 HELIX 8 8 ASP A 171 TRP A 185 1 15 HELIX 9 9 TRP A 185 TYR A 190 1 6 HELIX 10 10 SER A 197 GLY A 212 1 16 HELIX 11 11 ASN B 29 LYS B 46 1 18 HELIX 12 12 SER B 52 GLY B 61 1 10 HELIX 13 13 THR B 63 PHE B 71 1 9 HELIX 14 14 SER B 73 ALA B 98 1 26 HELIX 15 15 SER B 102 ASN B 121 1 20 HELIX 16 16 ASN B 121 ASN B 130 1 10 HELIX 17 17 SER B 136 THR B 164 1 29 HELIX 18 18 ASP B 171 TRP B 185 1 15 HELIX 19 19 TRP B 185 TYR B 190 1 6 HELIX 20 20 SER B 197 GLY B 212 1 16 LINK C GLU A 142 N MSE A 143 1555 1555 1.34 LINK C MSE A 143 N ARG A 144 1555 1555 1.34 LINK C ILE A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N GLN A 155 1555 1555 1.34 LINK C GLU B 142 N MSE B 143 1555 1555 1.34 LINK C MSE B 143 N ARG B 144 1555 1555 1.34 LINK C ILE B 153 N MSE B 154 1555 1555 1.33 LINK C MSE B 154 N GLN B 155 1555 1555 1.34 CRYST1 47.870 67.620 72.980 90.00 104.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020890 0.000000 0.005297 0.00000 SCALE2 0.000000 0.014789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014136 0.00000