HEADER MOTOR PROTEIN 04-JUN-08 3DCO TITLE DROSOPHILA NOD (3DC4) AND BOVINE TUBULIN (1JFF) DOCKED INTO THE 11- TITLE 2 ANGSTROM CRYO-EM MAP OF NUCLEOTIDE-FREE NOD COMPLEXED TO THE TITLE 3 MICROTUBULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN-LIKE PROTEIN NOD; COMPND 3 CHAIN: N; COMPND 4 FRAGMENT: CATALYTIC CORE DOMAIN (RESIDUES 1-318); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BOVINE ALPHA TUBULIN; COMPND 8 CHAIN: A; COMPND 9 FRAGMENT: ALPHA TUBULIN SUBUNIT; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: BOVINE BETA TUBULIN; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: BETA TUBULIN SUBUNIT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CG1763, NOD, NODA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 13 ORGANISM_TAXID: 9913; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 16 ORGANISM_TAXID: 9913 KEYWDS KINESIN, CATALYTIC DOMAIN, ATPASE, MICROTUBULE, ADP, NUCLEOTIDE- KEYWDS 2 BINDING PROTEIN, CRYO-EM, 3D RECONSTRUCTION, TUBULIN, NUCLEOTIDE- KEYWDS 3 FREE, ATP-BINDING, COILED COIL, MOTOR PROTEIN, NUCLEOTIDE-BINDING EXPDTA ELECTRON MICROSCOPY AUTHOR C.V.SINDELAR,J.C.COCHRAN,F.J.KULL REVDAT 6 21-FEB-24 3DCO 1 REMARK SEQADV LINK REVDAT 5 18-JUL-18 3DCO 1 REMARK REVDAT 4 09-NOV-16 3DCO 1 SCALE REVDAT 3 02-FEB-10 3DCO 1 REMARK REVDAT 2 08-SEP-09 3DCO 1 REMARK SITE CRYST1 REVDAT 1 10-FEB-09 3DCO 0 JRNL AUTH J.C.COCHRAN,C.V.SINDELAR,N.K.MULKO,K.A.COLLINS,S.E.KONG, JRNL AUTH 2 R.S.HAWLEY,F.J.KULL JRNL TITL ATPASE CYCLE OF THE NONMOTILE KINESIN NOD ALLOWS MICROTUBULE JRNL TITL 2 END TRACKING AND DRIVES CHROMOSOME MOVEMENT. JRNL REF CELL(CAMBRIDGE,MASS.) V. 136 110 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19135893 JRNL DOI 10.1016/J.CELL.2008.11.048 REMARK 2 REMARK 2 RESOLUTION. 11.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SITUS, SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3DC4 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 11.00 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 3DCO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047872. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : HELICAL ARRAY REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : NUCLEOTIDE-FREE NOD REMARK 245 (3DC4)COMPLEXED TO MICROTUBULE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.90 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : JEOL 4000EX REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 1600.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 60000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : LAB6 REMARK 245 ACCELERATION VOLTAGE (KV) : 400 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: N, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET N -14 REMARK 465 ALA N -13 REMARK 465 SER N -12 REMARK 465 ASP N -11 REMARK 465 TYR N -10 REMARK 465 LYS N -9 REMARK 465 ASP N -8 REMARK 465 ASP N -7 REMARK 465 ASP N -6 REMARK 465 ASP N -5 REMARK 465 LYS N -4 REMARK 465 ARG N -3 REMARK 465 ARG N -2 REMARK 465 ARG N -1 REMARK 465 GLY N 0 REMARK 465 MET N 1 REMARK 465 GLU N 2 REMARK 465 GLY N 3 REMARK 465 GLN N 20 REMARK 465 PHE N 21 REMARK 465 LEU N 22 REMARK 465 GLY N 23 REMARK 465 ARG N 24 REMARK 465 ARG N 25 REMARK 465 GLU N 26 REMARK 465 VAL N 193 REMARK 465 ARG N 194 REMARK 465 PRO N 195 REMARK 465 THR N 196 REMARK 465 ASN N 197 REMARK 465 MET N 198 REMARK 465 ASN N 199 REMARK 465 SER N 200 REMARK 465 ASN N 201 REMARK 465 SER N 202 REMARK 465 ARG N 234 REMARK 465 ARG N 235 REMARK 465 THR N 236 REMARK 465 GLY N 237 REMARK 465 HIS N 238 REMARK 465 GLU N 239 REMARK 465 GLY N 240 REMARK 465 VAL N 241 REMARK 465 ALA N 242 REMARK 465 ARG N 243 REMARK 465 GLN N 244 REMARK 465 GLU N 245 REMARK 465 GLY N 246 REMARK 465 HIS N 325 REMARK 465 HIS N 326 REMARK 465 HIS N 327 REMARK 465 HIS N 328 REMARK 465 HIS N 329 REMARK 465 MET A 1 REMARK 465 GLN A 35 REMARK 465 MET A 36 REMARK 465 PRO A 37 REMARK 465 SER A 38 REMARK 465 ASP A 39 REMARK 465 LYS A 40 REMARK 465 THR A 41 REMARK 465 ILE A 42 REMARK 465 GLY A 43 REMARK 465 GLY A 44 REMARK 465 GLY A 45 REMARK 465 ASP A 46 REMARK 465 ASP A 47 REMARK 465 SER A 48 REMARK 465 PHE A 49 REMARK 465 ASN A 50 REMARK 465 THR A 51 REMARK 465 PHE A 52 REMARK 465 PHE A 53 REMARK 465 SER A 54 REMARK 465 GLU A 55 REMARK 465 THR A 56 REMARK 465 GLY A 57 REMARK 465 ALA A 58 REMARK 465 GLY A 59 REMARK 465 LYS A 60 REMARK 465 VAL A 440 REMARK 465 GLU A 441 REMARK 465 GLY A 442 REMARK 465 GLU A 443 REMARK 465 GLY A 444 REMARK 465 GLU A 445 REMARK 465 GLU A 446 REMARK 465 GLU A 447 REMARK 465 GLY A 448 REMARK 465 GLU A 449 REMARK 465 GLU A 450 REMARK 465 TYR A 451 REMARK 465 MET B 1 REMARK 465 ALA B 438 REMARK 465 THR B 439 REMARK 465 ALA B 440 REMARK 465 ASP B 441 REMARK 465 GLU B 442 REMARK 465 GLN B 443 REMARK 465 GLY B 444 REMARK 465 GLU B 445 REMARK 465 PHE B 446 REMARK 465 GLU B 447 REMARK 465 GLU B 448 REMARK 465 GLU B 449 REMARK 465 GLY B 450 REMARK 465 GLU B 451 REMARK 465 GLU B 452 REMARK 465 ASP B 453 REMARK 465 GLU B 454 REMARK 465 ALA B 455 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N VAL N 269 CG GLU B 431 0.25 REMARK 500 CB SER N 316 CB GLU A 415 0.31 REMARK 500 CB THR N 268 C GLU B 431 0.55 REMARK 500 CE1 HIS N 267 CZ PHE B 262 0.71 REMARK 500 SD MET N 261 CD ARG A 402 0.78 REMARK 500 CG HIS N 267 OH TYR B 435 0.88 REMARK 500 OG SER N 316 CA GLU A 415 0.97 REMARK 500 OG1 THR N 268 O GLU B 431 0.98 REMARK 500 CG2 THR N 268 N TYR B 432 0.99 REMARK 500 CA SER N 316 CG GLU A 415 0.99 REMARK 500 CA SER N 316 CD GLU A 415 1.01 REMARK 500 CG1 VAL N 269 CG ARG B 264 1.03 REMARK 500 CB THR N 268 O GLU B 431 1.03 REMARK 500 CG ARG N 273 OE2 GLU B 196 1.03 REMARK 500 O THR N 315 OE2 GLU A 415 1.06 REMARK 500 CE1 HIS N 267 CE2 PHE B 262 1.07 REMARK 500 OG SER N 316 C GLU A 415 1.08 REMARK 500 C THR N 268 CB GLU B 431 1.08 REMARK 500 CB HIS N 267 OH TYR B 435 1.12 REMARK 500 C THR N 268 CG GLU B 431 1.14 REMARK 500 CA HIS N 267 CE1 TYR B 435 1.18 REMARK 500 NE2 HIS N 267 CZ PHE B 262 1.18 REMARK 500 CA THR N 268 C GLU B 431 1.23 REMARK 500 CB THR N 268 N TYR B 432 1.24 REMARK 500 CB VAL N 269 OE2 GLU B 431 1.27 REMARK 500 CA THR N 268 CA GLU B 431 1.32 REMARK 500 N SER N 316 CD GLU A 415 1.35 REMARK 500 CE MET N 261 CG ARG A 402 1.36 REMARK 500 N SER N 316 OE1 GLU A 415 1.36 REMARK 500 SD MET N 261 CG ARG A 402 1.36 REMARK 500 CA HIS N 267 CZ TYR B 435 1.37 REMARK 500 CD ARG N 273 OE2 GLU B 196 1.37 REMARK 500 CG2 THR N 268 C GLU B 431 1.38 REMARK 500 CD ARG N 273 CD GLU B 196 1.38 REMARK 500 CG2 VAL N 269 OE2 GLU B 431 1.42 REMARK 500 CE LYS N 258 CB HIS A 406 1.43 REMARK 500 CE1 HIS N 267 CE1 PHE B 262 1.46 REMARK 500 ND1 HIS N 267 CG PHE B 262 1.46 REMARK 500 NZ LYS N 258 CG HIS A 406 1.46 REMARK 500 OG SER N 316 CB GLU A 415 1.48 REMARK 500 CA THR N 268 O GLU B 431 1.49 REMARK 500 O HIS N 267 OE1 GLU B 431 1.52 REMARK 500 CB HIS N 267 CZ TYR B 435 1.54 REMARK 500 CB SER N 316 CG GLU A 415 1.54 REMARK 500 O THR N 268 CB GLU B 431 1.56 REMARK 500 ND1 HIS N 267 CD1 PHE B 262 1.57 REMARK 500 CE MET N 261 CD ARG A 402 1.58 REMARK 500 N VAL N 269 CD GLU B 431 1.58 REMARK 500 CG MET N 261 CG ARG A 402 1.59 REMARK 500 N VAL N 269 CB GLU B 431 1.59 REMARK 500 REMARK 500 THIS ENTRY HAS 132 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR N 268 CB - CA - C ANGL. DEV. = -24.4 DEGREES REMARK 500 GLN N 288 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 PRO A 173 C - N - CA ANGL. DEV. = 13.8 DEGREES REMARK 500 MET B 235 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO B 263 C - N - CA ANGL. DEV. = 13.0 DEGREES REMARK 500 PRO B 263 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE N 50 -157.94 -128.44 REMARK 500 GLU N 104 42.27 -95.58 REMARK 500 ALA N 164 -10.20 -156.10 REMARK 500 GLN N 167 -50.63 -137.84 REMARK 500 ARG N 168 90.96 -66.61 REMARK 500 ASN N 248 21.61 80.24 REMARK 500 ILE N 249 -72.97 78.29 REMARK 500 LEU N 251 -40.87 148.86 REMARK 500 LEU N 253 -60.97 -23.97 REMARK 500 VAL N 269 115.26 -165.38 REMARK 500 LEU N 285 59.90 -97.49 REMARK 500 LEU A 23 -38.39 -38.55 REMARK 500 TYR A 24 -79.92 -51.85 REMARK 500 GLN A 31 -179.93 -53.30 REMARK 500 PRO A 32 -59.29 -29.40 REMARK 500 PRO A 63 -153.08 -59.31 REMARK 500 ARG A 64 44.40 -166.16 REMARK 500 PRO A 89 3.88 -52.59 REMARK 500 LYS A 96 -26.94 -27.21 REMARK 500 GLU A 97 -131.65 -51.29 REMARK 500 ALA A 100 112.25 74.09 REMARK 500 ASN A 101 43.75 -73.64 REMARK 500 TYR A 103 -79.78 -38.47 REMARK 500 ALA A 104 -70.05 -21.27 REMARK 500 TYR A 108 -116.92 -70.92 REMARK 500 THR A 109 -94.27 -11.62 REMARK 500 ILE A 110 -70.72 -67.62 REMARK 500 GLU A 113 -38.89 -39.62 REMARK 500 ASP A 116 -73.06 -40.04 REMARK 500 CYS A 129 -164.38 -67.36 REMARK 500 SER A 140 65.50 -112.27 REMARK 500 PHE A 141 -67.78 11.56 REMARK 500 SER A 147 -70.40 -81.94 REMARK 500 PHE A 149 -74.63 -26.92 REMARK 500 SER A 158 -18.45 -48.57 REMARK 500 TYR A 161 44.00 -146.98 REMARK 500 LYS A 163 44.21 -81.91 REMARK 500 PRO A 173 120.00 -23.29 REMARK 500 GLN A 176 -21.11 -144.25 REMARK 500 VAL A 177 57.64 -103.88 REMARK 500 THR A 179 -77.70 -116.10 REMARK 500 GLU A 183 -64.06 6.95 REMARK 500 HIS A 197 -24.23 -140.92 REMARK 500 ALA A 208 -5.80 -53.69 REMARK 500 LEU A 217 -23.37 176.41 REMARK 500 ASP A 218 104.04 55.95 REMARK 500 ILE A 219 118.89 179.74 REMARK 500 ARG A 221 56.42 -113.49 REMARK 500 THR A 225 -9.14 -54.06 REMARK 500 GLN A 233 -62.61 -97.79 REMARK 500 REMARK 500 THIS ENTRY HAS 189 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG N 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER N 94 OG REMARK 620 2 ADP N 401 O2B 83.7 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DC4 RELATED DB: PDB REMARK 900 NOD-ADP COMPLEX REMARK 900 RELATED ID: 3DCB RELATED DB: PDB REMARK 900 NOD-AMPPNP COMPLEX REMARK 900 RELATED ID: 1JFF RELATED DB: PDB REMARK 900 BOVINE TUBULIN REMARK 900 RELATED ID: EMD-5038 RELATED DB: EMDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCES OF TUBULIN A AND B (CHAINS A AND B) IN THE SAMPLE WERE REMARK 999 DERIVED FROM COW, WHILE THE MODELS USED FOR FITTING THE MAP WERE REMARK 999 FROM PIG. DBREF 3DCO N 1 318 UNP P18105 NOD_DROME 1 318 DBREF 3DCO A 1 451 PDB 3DCO 3DCO 1 451 DBREF 3DCO B 1 455 PDB 3DCO 3DCO 1 455 SEQADV 3DCO MET N -14 UNP P18105 EXPRESSION TAG SEQADV 3DCO ALA N -13 UNP P18105 EXPRESSION TAG SEQADV 3DCO SER N -12 UNP P18105 EXPRESSION TAG SEQADV 3DCO ASP N -11 UNP P18105 EXPRESSION TAG SEQADV 3DCO TYR N -10 UNP P18105 EXPRESSION TAG SEQADV 3DCO LYS N -9 UNP P18105 EXPRESSION TAG SEQADV 3DCO ASP N -8 UNP P18105 EXPRESSION TAG SEQADV 3DCO ASP N -7 UNP P18105 EXPRESSION TAG SEQADV 3DCO ASP N -6 UNP P18105 EXPRESSION TAG SEQADV 3DCO ASP N -5 UNP P18105 EXPRESSION TAG SEQADV 3DCO LYS N -4 UNP P18105 EXPRESSION TAG SEQADV 3DCO ARG N -3 UNP P18105 EXPRESSION TAG SEQADV 3DCO ARG N -2 UNP P18105 EXPRESSION TAG SEQADV 3DCO ARG N -1 UNP P18105 EXPRESSION TAG SEQADV 3DCO GLY N 0 UNP P18105 EXPRESSION TAG SEQADV 3DCO ALA N 319 UNP P18105 EXPRESSION TAG SEQADV 3DCO ALA N 320 UNP P18105 EXPRESSION TAG SEQADV 3DCO ALA N 321 UNP P18105 EXPRESSION TAG SEQADV 3DCO LEU N 322 UNP P18105 EXPRESSION TAG SEQADV 3DCO GLU N 323 UNP P18105 EXPRESSION TAG SEQADV 3DCO HIS N 324 UNP P18105 EXPRESSION TAG SEQADV 3DCO HIS N 325 UNP P18105 EXPRESSION TAG SEQADV 3DCO HIS N 326 UNP P18105 EXPRESSION TAG SEQADV 3DCO HIS N 327 UNP P18105 EXPRESSION TAG SEQADV 3DCO HIS N 328 UNP P18105 EXPRESSION TAG SEQADV 3DCO HIS N 329 UNP P18105 EXPRESSION TAG SEQRES 1 N 344 MET ALA SER ASP TYR LYS ASP ASP ASP ASP LYS ARG ARG SEQRES 2 N 344 ARG GLY MET GLU GLY ALA LYS LEU SER ALA VAL ARG ILE SEQRES 3 N 344 ALA VAL ARG GLU ALA PRO TYR ARG GLN PHE LEU GLY ARG SEQRES 4 N 344 ARG GLU PRO SER VAL VAL GLN PHE PRO PRO TRP SER ASP SEQRES 5 N 344 GLY LYS SER LEU ILE VAL ASP GLN ASN GLU PHE HIS PHE SEQRES 6 N 344 ASP HIS ALA PHE PRO ALA THR ILE SER GLN ASP GLU MET SEQRES 7 N 344 TYR GLN ALA LEU ILE LEU PRO LEU VAL ASP LYS LEU LEU SEQRES 8 N 344 GLU GLY PHE GLN CYS THR ALA LEU ALA TYR GLY GLN THR SEQRES 9 N 344 GLY THR GLY LYS SER TYR SER MET GLY MET THR PRO PRO SEQRES 10 N 344 GLY GLU ILE LEU PRO GLU HIS LEU GLY ILE LEU PRO ARG SEQRES 11 N 344 ALA LEU GLY ASP ILE PHE GLU ARG VAL THR ALA ARG GLN SEQRES 12 N 344 GLU ASN ASN LYS ASP ALA ILE GLN VAL TYR ALA SER PHE SEQRES 13 N 344 ILE GLU ILE TYR ASN GLU LYS PRO PHE ASP LEU LEU GLY SEQRES 14 N 344 SER THR PRO HIS MET PRO MET VAL ALA ALA ARG CYS GLN SEQRES 15 N 344 ARG CYS THR CYS LEU PRO LEU HIS SER GLN ALA ASP LEU SEQRES 16 N 344 HIS HIS ILE LEU GLU LEU GLY THR ARG ASN ARG ARG VAL SEQRES 17 N 344 ARG PRO THR ASN MET ASN SER ASN SER SER ARG SER HIS SEQRES 18 N 344 ALA ILE VAL THR ILE HIS VAL LYS SER LYS THR HIS HIS SEQRES 19 N 344 SER ARG MET ASN ILE VAL ASP LEU ALA GLY SER GLU GLY SEQRES 20 N 344 VAL ARG ARG THR GLY HIS GLU GLY VAL ALA ARG GLN GLU SEQRES 21 N 344 GLY VAL ASN ILE ASN LEU GLY LEU LEU SER ILE ASN LYS SEQRES 22 N 344 VAL VAL MET SER MET ALA ALA GLY HIS THR VAL ILE PRO SEQRES 23 N 344 TYR ARG ASP SER VAL LEU THR THR VAL LEU GLN ALA SER SEQRES 24 N 344 LEU THR ALA GLN SER TYR LEU THR PHE LEU ALA CYS ILE SEQRES 25 N 344 SER PRO HIS GLN CYS ASP LEU SER GLU THR LEU SER THR SEQRES 26 N 344 LEU ARG PHE GLY THR SER ALA LYS ALA ALA ALA LEU GLU SEQRES 27 N 344 HIS HIS HIS HIS HIS HIS SEQRES 1 A 451 MET ARG GLU CYS ILE SER ILE HIS VAL GLY GLN ALA GLY SEQRES 2 A 451 VAL GLN ILE GLY ASN ALA CYS TRP GLU LEU TYR CYS LEU SEQRES 3 A 451 GLU HIS GLY ILE GLN PRO ASP GLY GLN MET PRO SER ASP SEQRES 4 A 451 LYS THR ILE GLY GLY GLY ASP ASP SER PHE ASN THR PHE SEQRES 5 A 451 PHE SER GLU THR GLY ALA GLY LYS HIS VAL PRO ARG ALA SEQRES 6 A 451 VAL PHE VAL ASP LEU GLU PRO THR VAL ILE ASP GLU VAL SEQRES 7 A 451 ARG THR GLY THR TYR ARG GLN LEU PHE HIS PRO GLU GLN SEQRES 8 A 451 LEU ILE THR GLY LYS GLU ASP ALA ALA ASN ASN TYR ALA SEQRES 9 A 451 ARG GLY HIS TYR THR ILE GLY LYS GLU ILE ILE ASP LEU SEQRES 10 A 451 VAL LEU ASP ARG ILE ARG LYS LEU ALA ASP GLN CYS THR SEQRES 11 A 451 GLY LEU GLN GLY PHE SER VAL PHE HIS SER PHE GLY GLY SEQRES 12 A 451 GLY THR GLY SER GLY PHE THR SER LEU LEU MET GLU ARG SEQRES 13 A 451 LEU SER VAL ASP TYR GLY LYS LYS SER LYS LEU GLU PHE SEQRES 14 A 451 SER ILE TYR PRO ALA PRO GLN VAL SER THR ALA VAL VAL SEQRES 15 A 451 GLU PRO TYR ASN SER ILE LEU THR THR HIS THR THR LEU SEQRES 16 A 451 GLU HIS SER ASP CYS ALA PHE MET VAL ASP ASN GLU ALA SEQRES 17 A 451 ILE TYR ASP ILE CYS ARG ARG ASN LEU ASP ILE GLU ARG SEQRES 18 A 451 PRO THR TYR THR ASN LEU ASN ARG LEU ILE GLY GLN ILE SEQRES 19 A 451 VAL SER SER ILE THR ALA SER LEU ARG PHE ASP GLY ALA SEQRES 20 A 451 LEU ASN VAL ASP LEU THR GLU PHE GLN THR ASN LEU VAL SEQRES 21 A 451 PRO TYR PRO ARG GLY HIS PHE PRO LEU ALA THR TYR ALA SEQRES 22 A 451 PRO VAL ILE SER ALA GLU LYS ALA TYR HIS GLU GLN LEU SEQRES 23 A 451 SER VAL ALA GLU ILE THR ASN ALA CYS PHE GLU PRO ALA SEQRES 24 A 451 ASN GLN MET VAL LYS CYS ASP PRO ARG HIS GLY LYS TYR SEQRES 25 A 451 MET ALA CYS CYS LEU LEU TYR ARG GLY ASP VAL VAL PRO SEQRES 26 A 451 LYS ASP VAL ASN ALA ALA ILE ALA THR ILE LYS THR LYS SEQRES 27 A 451 ARG THR ILE GLN PHE VAL ASP TRP CYS PRO THR GLY PHE SEQRES 28 A 451 LYS VAL GLY ILE ASN TYR GLU PRO PRO THR VAL VAL PRO SEQRES 29 A 451 GLY GLY ASP LEU ALA LYS VAL GLN ARG ALA VAL CYS MET SEQRES 30 A 451 LEU SER ASN THR THR ALA ILE ALA GLU ALA TRP ALA ARG SEQRES 31 A 451 LEU ASP HIS LYS PHE ASP LEU MET TYR ALA LYS ARG ALA SEQRES 32 A 451 PHE VAL HIS TRP TYR VAL GLY GLU GLY MET GLU GLU GLY SEQRES 33 A 451 GLU PHE SER GLU ALA ARG GLU ASP MET ALA ALA LEU GLU SEQRES 34 A 451 LYS ASP TYR GLU GLU VAL GLY VAL ASP SER VAL GLU GLY SEQRES 35 A 451 GLU GLY GLU GLU GLU GLY GLU GLU TYR SEQRES 1 B 445 MET ARG GLU ILE VAL HIS ILE GLN ALA GLY GLN CYS GLY SEQRES 2 B 445 ASN GLN ILE GLY ALA LYS PHE TRP GLU VAL ILE SER ASP SEQRES 3 B 445 GLU HIS GLY ILE ASP PRO THR GLY SER TYR HIS GLY ASP SEQRES 4 B 445 SER ASP LEU GLN LEU GLU ARG ILE ASN VAL TYR TYR ASN SEQRES 5 B 445 GLU ALA ALA GLY ASN LYS TYR VAL PRO ARG ALA ILE LEU SEQRES 6 B 445 VAL ASP LEU GLU PRO GLY THR MET ASP SER VAL ARG SER SEQRES 7 B 445 GLY PRO PHE GLY GLN ILE PHE ARG PRO ASP ASN PHE VAL SEQRES 8 B 445 PHE GLY GLN SER GLY ALA GLY ASN ASN TRP ALA LYS GLY SEQRES 9 B 445 HIS TYR THR GLU GLY ALA GLU LEU VAL ASP SER VAL LEU SEQRES 10 B 445 ASP VAL VAL ARG LYS GLU SER GLU SER CYS ASP CYS LEU SEQRES 11 B 445 GLN GLY PHE GLN LEU THR HIS SER LEU GLY GLY GLY THR SEQRES 12 B 445 GLY SER GLY MET GLY THR LEU LEU ILE SER LYS ILE ARG SEQRES 13 B 445 GLU GLU TYR PRO ASP ARG ILE MET ASN THR PHE SER VAL SEQRES 14 B 445 VAL PRO SER PRO LYS VAL SER ASP THR VAL VAL GLU PRO SEQRES 15 B 445 TYR ASN ALA THR LEU SER VAL HIS GLN LEU VAL GLU ASN SEQRES 16 B 445 THR ASP GLU THR TYR CYS ILE ASP ASN GLU ALA LEU TYR SEQRES 17 B 445 ASP ILE CYS PHE ARG THR LEU LYS LEU THR THR PRO THR SEQRES 18 B 445 TYR GLY ASP LEU ASN HIS LEU VAL SER ALA THR MET SER SEQRES 19 B 445 GLY VAL THR THR CYS LEU ARG PHE PRO GLY GLN LEU ASN SEQRES 20 B 445 ALA ASP LEU ARG LYS LEU ALA VAL ASN MET VAL PRO PHE SEQRES 21 B 445 PRO ARG LEU HIS PHE PHE MET PRO GLY PHE ALA PRO LEU SEQRES 22 B 445 THR SER ARG GLY SER GLN GLN TYR ARG ALA LEU THR VAL SEQRES 23 B 445 PRO GLU LEU THR GLN GLN MET PHE ASP ALA LYS ASN MET SEQRES 24 B 445 MET ALA ALA CYS ASP PRO ARG HIS GLY ARG TYR LEU THR SEQRES 25 B 445 VAL ALA ALA VAL PHE ARG GLY ARG MET SER MET LYS GLU SEQRES 26 B 445 VAL ASP GLU GLN MET LEU ASN VAL GLN ASN LYS ASN SER SEQRES 27 B 445 SER TYR PHE VAL GLU TRP ILE PRO ASN ASN VAL LYS THR SEQRES 28 B 445 ALA VAL CYS ASP ILE PRO PRO ARG GLY LEU LYS MET SER SEQRES 29 B 445 ALA THR PHE ILE GLY ASN SER THR ALA ILE GLN GLU LEU SEQRES 30 B 445 PHE LYS ARG ILE SER GLU GLN PHE THR ALA MET PHE ARG SEQRES 31 B 445 ARG LYS ALA PHE LEU HIS TRP TYR THR GLY GLU GLY MET SEQRES 32 B 445 ASP GLU MET GLU PHE THR GLU ALA GLU SER ASN MET ASN SEQRES 33 B 445 ASP LEU VAL SER GLU TYR GLN GLN TYR GLN ASP ALA THR SEQRES 34 B 445 ALA ASP GLU GLN GLY GLU PHE GLU GLU GLU GLY GLU GLU SEQRES 35 B 445 ASP GLU ALA HET MG N 402 1 HET ADP N 401 27 HET MG A 501 1 HET ZN A 900 1 HET GTP B 500 32 HET GDP B 600 28 HET TA1 B 601 62 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM TA1 TAXOL FORMUL 4 MG 2(MG 2+) FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 7 ZN ZN 2+ FORMUL 8 GTP C10 H16 N5 O14 P3 FORMUL 9 GDP C10 H15 N5 O11 P2 FORMUL 10 TA1 C47 H51 N O14 HELIX 1 1 SER N 59 ILE N 68 1 10 HELIX 2 2 ILE N 68 GLY N 78 1 11 HELIX 3 3 GLY N 92 GLY N 98 1 7 HELIX 4 4 PRO N 101 ILE N 105 5 5 HELIX 5 5 LEU N 106 LEU N 110 5 5 HELIX 6 6 GLY N 111 ARG N 127 1 17 HELIX 7 7 SER N 176 ASN N 190 1 15 HELIX 8 8 LEU N 251 ALA N 265 1 15 HELIX 9 9 PRO N 271 ASP N 274 5 4 HELIX 10 10 SER N 275 LEU N 281 1 7 HELIX 11 11 HIS N 300 CYS N 302 5 3 HELIX 12 12 ASP N 303 ALA N 321 1 19 HELIX 13 13 GLY A 10 GLU A 27 1 18 HELIX 14 14 GLU A 71 GLY A 81 1 11 HELIX 15 15 ASN A 102 TYR A 108 1 7 HELIX 16 16 TYR A 108 CYS A 129 1 22 HELIX 17 17 SER A 147 TYR A 161 1 15 HELIX 18 18 GLU A 183 LEU A 195 1 13 HELIX 19 19 ASP A 205 ASN A 216 1 12 HELIX 20 20 THR A 223 ARG A 243 1 21 HELIX 21 21 ASP A 251 VAL A 260 1 10 HELIX 22 22 SER A 287 THR A 292 1 6 HELIX 23 23 THR A 292 GLU A 297 1 6 HELIX 24 24 VAL A 324 THR A 337 1 14 HELIX 25 25 ILE A 384 ALA A 400 1 17 HELIX 26 26 LYS A 401 PHE A 404 5 4 HELIX 27 27 VAL A 405 GLY A 410 1 6 HELIX 28 28 GLU A 414 LYS A 430 1 17 HELIX 29 29 LYS A 430 VAL A 435 1 6 HELIX 30 30 GLN B 11 GLU B 27 1 17 HELIX 31 31 ARG B 48 TYR B 53 5 6 HELIX 32 32 GLU B 71 ARG B 79 1 9 HELIX 33 33 PRO B 82 ILE B 86 5 5 HELIX 34 34 ARG B 88 ASP B 90 5 3 HELIX 35 35 GLU B 110 GLU B 127 1 18 HELIX 36 36 GLY B 143 TYR B 161 1 19 HELIX 37 37 GLU B 183 VAL B 195 1 13 HELIX 38 38 ASP B 205 ARG B 215 1 11 HELIX 39 39 THR B 223 ARG B 243 1 21 HELIX 40 40 ASP B 251 VAL B 260 1 10 HELIX 41 41 VAL B 288 PHE B 296 1 9 HELIX 42 42 ASP B 306 GLY B 310 5 5 HELIX 43 43 SER B 324 ASN B 339 1 16 HELIX 44 44 ILE B 384 ARG B 400 1 17 HELIX 45 45 LYS B 402 PHE B 404 5 3 HELIX 46 46 LEU B 405 GLY B 410 1 6 HELIX 47 47 ASP B 414 ASP B 437 1 24 SHEET 1 A 8 HIS N 52 PHE N 54 0 SHEET 2 A 8 ALA N 8 GLU N 15 1 N VAL N 13 O PHE N 54 SHEET 3 A 8 TYR N 290 ILE N 297 1 O ALA N 295 N ALA N 12 SHEET 4 A 8 CYS N 81 TYR N 86 1 N LEU N 84 O LEU N 294 SHEET 5 A 8 HIS N 219 ASP N 226 1 O ASN N 223 N CYS N 81 SHEET 6 A 8 SER N 205 LYS N 214 -1 N ALA N 207 O ASP N 226 SHEET 7 A 8 GLN N 136 TYR N 145 -1 N GLN N 136 O LYS N 214 SHEET 8 A 8 PRO N 149 ASP N 151 -1 O PHE N 150 N GLU N 143 SHEET 1 B 8 HIS N 52 PHE N 54 0 SHEET 2 B 8 ALA N 8 GLU N 15 1 N VAL N 13 O PHE N 54 SHEET 3 B 8 TYR N 290 ILE N 297 1 O ALA N 295 N ALA N 12 SHEET 4 B 8 CYS N 81 TYR N 86 1 N LEU N 84 O LEU N 294 SHEET 5 B 8 HIS N 219 ASP N 226 1 O ASN N 223 N CYS N 81 SHEET 6 B 8 SER N 205 LYS N 214 -1 N ALA N 207 O ASP N 226 SHEET 7 B 8 GLN N 136 TYR N 145 -1 N GLN N 136 O LYS N 214 SHEET 8 B 8 LEU N 172 PRO N 173 -1 O LEU N 172 N ALA N 139 SHEET 1 C 3 VAL N 30 GLN N 31 0 SHEET 2 C 3 SER N 40 VAL N 43 -1 O ILE N 42 N GLN N 31 SHEET 3 C 3 ASN N 46 HIS N 49 -1 O PHE N 48 N LEU N 41 SHEET 1 D 6 LEU A 92 THR A 94 0 SHEET 2 D 6 ALA A 65 ASP A 69 1 N PHE A 67 O ILE A 93 SHEET 3 D 6 CYS A 4 VAL A 9 1 N SER A 6 O VAL A 66 SHEET 4 D 6 GLY A 134 HIS A 139 1 O SER A 136 N ILE A 5 SHEET 5 D 6 LEU A 167 SER A 170 1 O PHE A 169 N VAL A 137 SHEET 6 D 6 CYS A 200 MET A 203 1 O PHE A 202 N SER A 170 SHEET 1 E 4 LEU A 269 THR A 271 0 SHEET 2 E 4 ARG A 373 THR A 381 -1 O SER A 379 N LEU A 269 SHEET 3 E 4 TYR A 312 GLY A 321 -1 N CYS A 316 O LEU A 378 SHEET 4 E 4 PHE A 351 ILE A 355 1 O GLY A 354 N TYR A 319 SHEET 1 F10 PHE B 92 PHE B 94 0 SHEET 2 F10 ALA B 65 ASP B 69 1 N LEU B 67 O VAL B 93 SHEET 3 F10 HIS B 6 ALA B 9 1 N GLN B 8 O ILE B 66 SHEET 4 F10 GLY B 134 HIS B 139 1 O THR B 138 N ILE B 7 SHEET 5 F10 ILE B 165 SER B 170 1 O PHE B 169 N LEU B 137 SHEET 6 F10 GLU B 200 TYR B 202 1 O TYR B 202 N THR B 168 SHEET 7 F10 PHE B 267 GLY B 271 1 O PHE B 268 N THR B 201 SHEET 8 F10 ALA B 375 SER B 381 -1 O PHE B 377 N GLY B 271 SHEET 9 F10 TYR B 312 ARG B 320 -1 N VAL B 318 O THR B 376 SHEET 10 F10 VAL B 351 CYS B 356 1 O CYS B 356 N PHE B 319 LINK OG SER N 94 MG MG N 402 1555 1555 2.15 LINK O2B ADP N 401 MG MG N 402 1555 1555 2.27 LINK MG MG A 501 O1G GTP B 500 1555 1555 2.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000