HEADER SUGAR BINDING PROTEIN 04-JUN-08 3DCQ TITLE LECB (PA-LII) IN COMPLEX WITH THE SYNTHETIC LIGAND 2G0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN PA-IIL; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LECB, PA3361; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22A KEYWDS LECTIN, CARBOHYDRATE, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.M.JOHANSSON,S.A.CRUSZ,E.KOLOMIETS,L.BUTS,R.U.KADAM,M.CACCIARINI, AUTHOR 2 K.M.BARTELS,S.P.DIGGLE,M.CAMARA,P.WILLIAMS,R.LORIS,C.NATIVI, AUTHOR 3 F.ROSENAU,K.E.JAEGER,T.DARBRE,J.L.REYMOND REVDAT 3 01-NOV-23 3DCQ 1 REMARK LINK REVDAT 2 25-OCT-17 3DCQ 1 REMARK REVDAT 1 13-JAN-09 3DCQ 0 JRNL AUTH E.M.JOHANSSON,S.A.CRUSZ,E.KOLOMIETS,L.BUTS,R.U.KADAM, JRNL AUTH 2 M.CACCIARINI,K.M.BARTELS,S.P.DIGGLE,M.CAMARA,P.WILLIAMS, JRNL AUTH 3 R.LORIS,C.NATIVI,F.ROSENAU,K.E.JAEGER,T.DARBRE,J.L.REYMOND JRNL TITL INHIBITION AND DISPERSION OF PSEUDOMONAS AERUGINOSA BIOFILMS JRNL TITL 2 BY GLYCOPEPTIDE DENDRIMERS TARGETING THE FUCOSE-SPECIFIC JRNL TITL 3 LECTIN LECB. JRNL REF CHEM.BIOL. V. 15 1249 2008 JRNL REFN ISSN 1074-5521 JRNL PMID 19101469 JRNL DOI 10.1016/J.CHEMBIOL.2008.10.009 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 35997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1792 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3265 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.801 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36055 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OVP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8000, 150MM AMMONIUM SULPHATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.66000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.51500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.76000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.51500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.66000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.76000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 33 CG OD1 ND2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 ASN C 29 OD1 ND2 REMARK 470 ASN C 33 CG OD1 ND2 REMARK 470 GLU C 35 CG CD OE1 OE2 REMARK 470 ARG C 72 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 33 CG OD1 ND2 REMARK 470 GLU D 35 CG CD OE1 OE2 REMARK 470 ARG D 72 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -39.69 -140.25 REMARK 500 TYR A 102 28.51 48.50 REMARK 500 GLU B 86 -43.67 -135.81 REMARK 500 TYR B 102 29.04 49.31 REMARK 500 GLU C 86 -41.40 -137.30 REMARK 500 TYR C 102 29.16 47.60 REMARK 500 ASN D 21 71.74 -150.34 REMARK 500 GLU D 86 -39.71 -143.54 REMARK 500 TYR D 102 28.25 49.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2G0 A 201 REMARK 610 2G0 B 201 REMARK 610 2G0 C 201 REMARK 610 2G0 D 201 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD2 154.0 REMARK 620 3 ASN A 103 OD1 87.0 76.0 REMARK 620 4 ASP A 104 OD1 78.9 118.7 86.3 REMARK 620 5 2G0 A 201 O3 132.2 72.3 134.2 81.0 REMARK 620 6 2G0 A 201 O4 79.0 112.1 160.8 103.4 64.4 REMARK 620 7 GLY B 114 O 81.2 78.9 88.4 159.7 116.2 76.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 115 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 51.9 REMARK 620 3 ASP A 99 OD1 85.1 84.7 REMARK 620 4 ASP A 101 OD1 79.9 131.5 86.8 REMARK 620 5 ASP A 104 OD1 119.5 125.2 148.7 79.6 REMARK 620 6 ASP A 104 OD2 83.2 75.5 160.1 106.7 50.5 REMARK 620 7 2G0 A 201 O2 137.7 85.9 93.9 142.4 80.6 84.2 REMARK 620 8 2G0 A 201 O3 147.1 143.6 71.9 75.8 77.5 124.9 68.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ASN B 21 O 79.5 REMARK 620 3 ASP B 101 OD2 78.2 149.7 REMARK 620 4 ASN B 103 OD1 86.3 84.7 73.6 REMARK 620 5 ASP B 104 OD1 160.3 81.4 117.6 87.3 REMARK 620 6 2G0 B 201 O4 77.5 80.0 114.5 159.4 103.8 REMARK 620 7 2G0 B 201 O3 117.0 136.8 72.5 133.0 80.5 66.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 115 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE1 REMARK 620 2 GLU B 95 OE2 51.3 REMARK 620 3 ASP B 99 OD1 84.5 79.6 REMARK 620 4 ASP B 101 OD1 78.8 128.8 86.0 REMARK 620 5 ASP B 104 OD1 117.1 126.9 152.4 82.1 REMARK 620 6 ASP B 104 OD2 82.4 77.7 157.2 109.5 49.7 REMARK 620 7 2G0 B 201 O3 148.9 141.8 74.6 77.1 78.5 124.2 REMARK 620 8 2G0 B 201 O2 137.4 87.0 97.3 143.8 78.5 80.2 69.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 115 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 21 O REMARK 620 2 ASP C 101 OD2 154.5 REMARK 620 3 ASN C 103 OD1 83.6 77.1 REMARK 620 4 ASP C 104 OD1 76.7 118.3 87.1 REMARK 620 5 2G0 C 201 O4 77.5 116.1 156.9 101.2 REMARK 620 6 2G0 C 201 O3 132.2 72.8 137.2 81.3 65.9 REMARK 620 7 GLY D 114 O 80.3 80.7 82.7 155.7 81.1 120.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 95 OE1 REMARK 620 2 GLU C 95 OE2 50.5 REMARK 620 3 ASP C 99 OD1 82.6 82.6 REMARK 620 4 ASP C 101 OD1 78.2 128.5 86.9 REMARK 620 5 ASP C 104 OD1 119.6 125.9 150.7 80.1 REMARK 620 6 ASP C 104 OD2 84.4 77.1 159.7 105.7 49.4 REMARK 620 7 2G0 C 201 O2 138.5 88.2 98.0 143.3 78.2 81.7 REMARK 620 8 2G0 C 201 O3 148.9 144.0 75.4 78.9 76.3 122.1 67.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C 114 O REMARK 620 2 ASN D 21 O 77.3 REMARK 620 3 ASP D 101 OD1 81.7 153.3 REMARK 620 4 ASN D 103 OD1 84.8 84.7 77.0 REMARK 620 5 ASP D 104 OD1 157.2 80.4 117.9 88.4 REMARK 620 6 2G0 D 201 O3 116.7 137.3 67.7 134.1 83.4 REMARK 620 7 2G0 D 201 O4 77.4 80.3 111.1 158.9 103.7 65.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 115 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 95 OE1 REMARK 620 2 GLU D 95 OE2 52.0 REMARK 620 3 ASP D 99 OD1 84.0 82.2 REMARK 620 4 ASP D 101 OD2 81.1 132.0 83.8 REMARK 620 5 ASP D 104 OD1 118.5 127.7 149.3 79.9 REMARK 620 6 ASP D 104 OD2 84.6 79.2 161.4 108.9 49.1 REMARK 620 7 2G0 D 201 O3 149.0 140.2 73.0 76.2 77.9 122.5 REMARK 620 8 2G0 D 201 O2 138.1 86.9 99.7 140.8 77.8 79.3 67.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2G0 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2G0 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2G0 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2G0 D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OXC RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH THE NATURAL SUGAR FUCOSE REMARK 900 RELATED ID: 1OUX RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A LIGAND-FREE STATE DBREF 3DCQ A 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 DBREF 3DCQ B 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 DBREF 3DCQ C 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 DBREF 3DCQ D 1 114 UNP Q9HYN5 Q9HYN5_PSEAE 2 115 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 A 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 A 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 A 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 B 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 B 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 B 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 B 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 B 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 B 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 B 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 B 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 C 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 C 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 C 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 C 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 C 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 C 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 C 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 C 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 D 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR ARG SEQRES 2 D 114 PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR GLN SEQRES 3 D 114 THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA THR SEQRES 4 D 114 PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY THR SEQRES 5 D 114 GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN VAL SEQRES 6 D 114 GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SER SEQRES 7 D 114 ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA LEU SEQRES 8 D 114 VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN ASP SEQRES 9 D 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY HET CA A 115 1 HET CA A 116 1 HET 2G0 A 201 35 HET CA B 115 1 HET CA B 116 1 HET 2G0 B 201 31 HET CA C 115 1 HET CA C 116 1 HET 2G0 C 201 17 HET CA D 115 1 HET CA D 116 1 HET 2G0 D 201 11 HETNAM CA CALCIUM ION HETNAM 2G0 (2S)-1-[(2S)-6-AMINO-2-({[(2S,3S,4R,5S,6S)-3,4,5- HETNAM 2 2G0 TRIHYDROXY-6-METHYLTETRAHYDRO-2H-PYRAN-2- HETNAM 3 2G0 YL]ACETYL}AMINO)HEXANOYL]-N-[(1S)-1-CARBAMOYL-3- HETNAM 4 2G0 METHYLBUTYL]PYRROLIDINE-2-CARBOXAMIDE FORMUL 5 CA 8(CA 2+) FORMUL 7 2G0 4(C25 H45 N5 O8) FORMUL 17 HOH *340(H2 O) SHEET 1 A12 VAL A 5 THR A 7 0 SHEET 2 A12 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 A12 ARG A 13 VAL A 32 -1 N LEU A 31 O GLN A 64 SHEET 4 A12 ALA A 105 TRP A 111 -1 O VAL A 106 N PHE A 19 SHEET 5 A12 LEU A 87 GLU A 95 -1 N VAL A 92 O VAL A 107 SHEET 6 A12 ASP A 75 LEU A 83 -1 N ALA A 79 O LEU A 91 SHEET 7 A12 ASP D 75 LEU D 83 -1 O GLN D 80 N ILE A 82 SHEET 8 A12 LEU D 87 GLU D 95 -1 O LEU D 91 N ALA D 79 SHEET 9 A12 ALA D 105 TRP D 111 -1 O ILE D 109 N ALA D 90 SHEET 10 A12 ARG D 13 VAL D 32 -1 N PHE D 19 O VAL D 106 SHEET 11 A12 LYS D 62 VAL D 69 -1 O GLN D 64 N LEU D 31 SHEET 12 A12 VAL D 5 THR D 7 -1 N PHE D 6 O VAL D 63 SHEET 1 B 4 ARG A 72 PRO A 73 0 SHEET 2 B 4 LYS A 62 VAL A 69 -1 N VAL A 69 O ARG A 72 SHEET 3 B 4 ARG A 13 VAL A 32 -1 N LEU A 31 O GLN A 64 SHEET 4 B 4 GLU A 35 ASN A 56 -1 O ALA A 37 N VAL A 30 SHEET 1 C 4 GLU D 35 ASN D 56 0 SHEET 2 C 4 ARG D 13 VAL D 32 -1 N VAL D 30 O ALA D 37 SHEET 3 C 4 LYS D 62 VAL D 69 -1 O GLN D 64 N LEU D 31 SHEET 4 C 4 ARG D 72 PRO D 73 -1 O ARG D 72 N VAL D 69 SHEET 1 D 4 VAL B 5 THR B 7 0 SHEET 2 D 4 LYS B 62 VAL B 69 -1 O VAL B 63 N PHE B 6 SHEET 3 D 4 GLN B 26 VAL B 32 -1 N LEU B 31 O GLN B 64 SHEET 4 D 4 GLU B 35 GLY B 42 -1 O ALA B 37 N VAL B 30 SHEET 1 E 3 VAL B 5 THR B 7 0 SHEET 2 E 3 LYS B 62 VAL B 69 -1 O VAL B 63 N PHE B 6 SHEET 3 E 3 ARG B 72 PRO B 73 -1 O ARG B 72 N VAL B 69 SHEET 1 F11 ALA B 48 ASN B 56 0 SHEET 2 F11 ARG B 13 ALA B 20 -1 N PHE B 14 O LEU B 55 SHEET 3 F11 ALA B 105 TRP B 111 -1 O VAL B 106 N PHE B 19 SHEET 4 F11 LEU B 87 GLU B 95 -1 N ALA B 90 O ILE B 109 SHEET 5 F11 ASP B 75 LEU B 83 -1 N ALA B 79 O LEU B 91 SHEET 6 F11 ASP C 75 LEU C 83 -1 O ILE C 82 N GLN B 80 SHEET 7 F11 LEU C 87 GLU C 95 -1 O LEU C 91 N ALA C 79 SHEET 8 F11 ALA C 105 TRP C 111 -1 O TRP C 111 N ASN C 88 SHEET 9 F11 ARG C 13 VAL C 32 -1 N PHE C 19 O VAL C 106 SHEET 10 F11 LYS C 62 VAL C 69 -1 O GLN C 64 N LEU C 31 SHEET 11 F11 GLU C 35 ASN C 56 0 SHEET 1 G 4 VAL C 5 THR C 7 0 SHEET 2 G 4 LYS C 62 VAL C 69 -1 O VAL C 63 N PHE C 6 SHEET 3 G 4 ARG C 13 VAL C 32 -1 N LEU C 31 O GLN C 64 SHEET 4 G 4 ARG C 72 PRO C 73 0 LINK O ASN A 21 CA CA A 116 1555 1555 2.40 LINK OE1 GLU A 95 CA CA A 115 1555 1555 2.53 LINK OE2 GLU A 95 CA CA A 115 1555 1555 2.49 LINK OD1 ASP A 99 CA CA A 115 1555 1555 2.37 LINK OD1 ASP A 101 CA CA A 115 1555 1555 2.42 LINK OD2 ASP A 101 CA CA A 116 1555 1555 2.45 LINK OD1 ASN A 103 CA CA A 116 1555 1555 2.37 LINK OD1 ASP A 104 CA CA A 115 1555 1555 2.68 LINK OD2 ASP A 104 CA CA A 115 1555 1555 2.44 LINK OD1 ASP A 104 CA CA A 116 1555 1555 2.44 LINK O GLY A 114 CA CA B 116 1555 1555 2.49 LINK CA CA A 115 O2 2G0 A 201 1555 1555 2.60 LINK CA CA A 115 O3 2G0 A 201 1555 1555 2.50 LINK CA CA A 116 O3 2G0 A 201 1555 1555 2.56 LINK CA CA A 116 O4 2G0 A 201 1555 1555 2.53 LINK CA CA A 116 O GLY B 114 1555 1555 2.52 LINK O ASN B 21 CA CA B 116 1555 1555 2.44 LINK OE1 GLU B 95 CA CA B 115 1555 1555 2.58 LINK OE2 GLU B 95 CA CA B 115 1555 1555 2.53 LINK OD1 ASP B 99 CA CA B 115 1555 1555 2.41 LINK OD1 ASP B 101 CA CA B 115 1555 1555 2.42 LINK OD2 ASP B 101 CA CA B 116 1555 1555 2.52 LINK OD1 ASN B 103 CA CA B 116 1555 1555 2.38 LINK OD1 ASP B 104 CA CA B 115 1555 1555 2.67 LINK OD2 ASP B 104 CA CA B 115 1555 1555 2.52 LINK OD1 ASP B 104 CA CA B 116 1555 1555 2.46 LINK CA CA B 115 O3 2G0 B 201 1555 1555 2.46 LINK CA CA B 115 O2 2G0 B 201 1555 1555 2.58 LINK CA CA B 116 O4 2G0 B 201 1555 1555 2.49 LINK CA CA B 116 O3 2G0 B 201 1555 1555 2.57 LINK O ASN C 21 CA CA C 115 1555 1555 2.48 LINK OE1 GLU C 95 CA CA C 116 1555 1555 2.64 LINK OE2 GLU C 95 CA CA C 116 1555 1555 2.56 LINK OD1 ASP C 99 CA CA C 116 1555 1555 2.42 LINK OD2 ASP C 101 CA CA C 115 1555 1555 2.42 LINK OD1 ASP C 101 CA CA C 116 1555 1555 2.44 LINK OD1 ASN C 103 CA CA C 115 1555 1555 2.42 LINK OD1 ASP C 104 CA CA C 115 1555 1555 2.47 LINK OD1 ASP C 104 CA CA C 116 1555 1555 2.73 LINK OD2 ASP C 104 CA CA C 116 1555 1555 2.44 LINK O GLY C 114 CA CA D 116 1555 1555 2.51 LINK CA CA C 115 O4 2G0 C 201 1555 1555 2.50 LINK CA CA C 115 O3 2G0 C 201 1555 1555 2.54 LINK CA CA C 115 O GLY D 114 1555 1555 2.51 LINK CA CA C 116 O2 2G0 C 201 1555 1555 2.58 LINK CA CA C 116 O3 2G0 C 201 1555 1555 2.55 LINK O ASN D 21 CA CA D 116 1555 1555 2.39 LINK OE1 GLU D 95 CA CA D 115 1555 1555 2.56 LINK OE2 GLU D 95 CA CA D 115 1555 1555 2.54 LINK OD1 ASP D 99 CA CA D 115 1555 1555 2.43 LINK OD2 ASP D 101 CA CA D 115 1555 1555 2.37 LINK OD1 ASP D 101 CA CA D 116 1555 1555 2.44 LINK OD1 ASN D 103 CA CA D 116 1555 1555 2.40 LINK OD1 ASP D 104 CA CA D 115 1555 1555 2.70 LINK OD2 ASP D 104 CA CA D 115 1555 1555 2.54 LINK OD1 ASP D 104 CA CA D 116 1555 1555 2.43 LINK CA CA D 115 O3 2G0 D 201 1555 1555 2.58 LINK CA CA D 115 O2 2G0 D 201 1555 1555 2.57 LINK CA CA D 116 O3 2G0 D 201 1555 1555 2.56 LINK CA CA D 116 O4 2G0 D 201 1555 1555 2.49 CISPEP 1 TRP A 111 PRO A 112 0 -0.35 CISPEP 2 TRP B 111 PRO B 112 0 0.08 CISPEP 3 TRP C 111 PRO C 112 0 -0.34 CISPEP 4 TRP D 111 PRO D 112 0 -0.12 SITE 1 AC1 4 GLU A 95 ASP A 99 ASP A 101 ASP A 104 SITE 1 AC2 5 ASN A 21 ASP A 101 ASN A 103 ASP A 104 SITE 2 AC2 5 GLY B 114 SITE 1 AC3 4 GLU B 95 ASP B 99 ASP B 101 ASP B 104 SITE 1 AC4 5 GLY A 114 ASN B 21 ASP B 101 ASN B 103 SITE 2 AC4 5 ASP B 104 SITE 1 AC5 5 ASN C 21 ASP C 101 ASN C 103 ASP C 104 SITE 2 AC5 5 GLY D 114 SITE 1 AC6 4 GLU C 95 ASP C 99 ASP C 101 ASP C 104 SITE 1 AC7 4 GLU D 95 ASP D 99 ASP D 101 ASP D 104 SITE 1 AC8 5 GLY C 114 ASN D 21 ASP D 101 ASN D 103 SITE 2 AC8 5 ASP D 104 SITE 1 AC9 14 ASN A 21 SER A 22 SER A 23 ASN A 70 SITE 2 AC9 14 GLU A 95 ASP A 96 ASP A 99 ASP A 101 SITE 3 AC9 14 ASP A 104 ASN B 70 GLY B 71 GLY B 114 SITE 4 AC9 14 GLY C 42 GLN C 43 SITE 1 BC1 13 SER A 68 GLY A 71 ARG A 72 PRO A 73 SITE 2 BC1 13 GLY A 114 ASN B 21 SER B 22 SER B 23 SITE 3 BC1 13 GLU B 95 ASP B 96 ASP B 99 ASP B 101 SITE 4 BC1 13 ASP B 104 SITE 1 BC2 9 ASN C 21 SER C 22 SER C 23 GLU C 95 SITE 2 BC2 9 ASP C 96 ASP C 99 ASP C 101 ASP C 104 SITE 3 BC2 9 GLY D 114 SITE 1 BC3 9 GLY C 114 ASN D 21 SER D 22 SER D 23 SITE 2 BC3 9 GLU D 95 ASP D 96 ASP D 99 ASP D 101 SITE 3 BC3 9 ASP D 104 CRYST1 51.320 75.520 99.030 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019486 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010098 0.00000