HEADER TRANSFERASE 05-JUN-08 3DD6 TITLE CRYSTAL STRUCTURE OF RPH, AN EXORIBONUCLEASE FROM BACILLUS ANTHRACIS TITLE 2 AT 1.7 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE PH; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNASE PH, TRNA NUCLEOTIDYLTRANSFERASE; COMPND 5 EC: 2.7.7.56; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 STRAIN: AMES; SOURCE 4 GENE: RPH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1392; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-YSBLIC KEYWDS EXORIBONUCLEASE, BACILLUS ANTHRACIS, TRNA MATURATION, RNASE PH., KEYWDS 2 TRANSFERASE, STRUCTURAL GENOMICS, STRUCTURAL PROTEOMICS IN EUROPE 2, KEYWDS 3 SPINE-2 EXPDTA X-RAY DIFFRACTION AUTHOR A.E.RAWLINGS,E.V.BLAGOVA,V.M.LEVDIKOV,M.J.FOGG,K.S.WILSON, AUTHOR 2 A.J.WILKINSON,STRUCTURAL PROTEOMICS IN EUROPE 2 (SPINE-2) REVDAT 3 30-AUG-23 3DD6 1 REMARK SEQADV REVDAT 2 18-JUL-18 3DD6 1 KEYWDS AUTHOR REMARK REVDAT 1 10-FEB-09 3DD6 0 JRNL AUTH A.E.RAWLINGS,E.V.BLAGOVA,V.M.LEVDIKOV,M.J.FOGG,K.S.WILSON, JRNL AUTH 2 A.J.WILKINSON JRNL TITL THE STRUCTURE OF RPH, AN EXORIBONUCLEASE FROM BACILLUS JRNL TITL 2 ANTHRACIS, AT 1.7 A RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 65 2 2009 JRNL REFN ESSN 1744-3091 JRNL PMID 19153445 JRNL DOI 10.1107/S1744309108041511 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 26895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1413 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1852 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 0.41000 REMARK 3 B12 (A**2) : -0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.834 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1931 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2613 ; 1.462 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 8.631 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;34.699 ;24.337 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;14.646 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.523 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 304 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1412 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1216 ; 0.760 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1958 ; 1.246 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 715 ; 2.235 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 654 ; 3.499 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 13 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8606 -5.3850 -18.8243 REMARK 3 T TENSOR REMARK 3 T11: 0.1349 T22: -0.0682 REMARK 3 T33: 0.2264 T12: 0.0241 REMARK 3 T13: -0.0935 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 2.8191 L22: 3.8236 REMARK 3 L33: 6.0411 L12: 0.7353 REMARK 3 L13: -4.0702 L23: -0.2880 REMARK 3 S TENSOR REMARK 3 S11: 0.4692 S12: 0.2056 S13: 0.1495 REMARK 3 S21: -0.5351 S22: -0.4121 S23: 0.0104 REMARK 3 S31: -0.2175 S32: 0.5088 S33: -0.0571 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 46 REMARK 3 RESIDUE RANGE : A 57 A 64 REMARK 3 RESIDUE RANGE : A 87 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2219 -23.9341 -40.1695 REMARK 3 T TENSOR REMARK 3 T11: -0.0935 T22: -0.0534 REMARK 3 T33: -0.1560 T12: -0.0216 REMARK 3 T13: -0.0376 T23: 0.0795 REMARK 3 L TENSOR REMARK 3 L11: 2.1578 L22: 1.9228 REMARK 3 L33: 1.4663 L12: -0.0471 REMARK 3 L13: 0.2553 L23: -0.4673 REMARK 3 S TENSOR REMARK 3 S11: -0.1536 S12: 0.3830 S13: 0.3588 REMARK 3 S21: -0.1877 S22: 0.0442 S23: 0.0856 REMARK 3 S31: 0.0675 S32: 0.1088 S33: 0.1094 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7343 -35.1039 -53.2185 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.1302 REMARK 3 T33: 0.0503 T12: -0.1524 REMARK 3 T13: -0.0306 T23: -0.0674 REMARK 3 L TENSOR REMARK 3 L11: 15.3988 L22: 4.8081 REMARK 3 L33: 14.4098 L12: -0.2723 REMARK 3 L13: 5.5859 L23: 0.3764 REMARK 3 S TENSOR REMARK 3 S11: 0.2046 S12: 0.2308 S13: -1.2823 REMARK 3 S21: -0.0826 S22: -0.2802 S23: 1.2201 REMARK 3 S31: 0.7501 S32: -0.4207 S33: 0.0756 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8179 -34.7273 -22.7510 REMARK 3 T TENSOR REMARK 3 T11: 0.1014 T22: 0.0261 REMARK 3 T33: -0.0965 T12: 0.0283 REMARK 3 T13: 0.0213 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 6.6308 L22: 0.5165 REMARK 3 L33: 1.0941 L12: -1.3912 REMARK 3 L13: 2.3219 L23: -0.7384 REMARK 3 S TENSOR REMARK 3 S11: -0.0812 S12: -0.0461 S13: -0.3187 REMARK 3 S21: 0.3597 S22: 0.1067 S23: 0.4293 REMARK 3 S31: 0.0844 S32: 0.0688 S33: -0.0255 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 163 REMARK 3 RESIDUE RANGE : A 223 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7878 -10.9584 -41.2868 REMARK 3 T TENSOR REMARK 3 T11: -0.0337 T22: -0.0799 REMARK 3 T33: 0.1015 T12: -0.0162 REMARK 3 T13: -0.0968 T23: 0.1361 REMARK 3 L TENSOR REMARK 3 L11: 2.7618 L22: 2.6200 REMARK 3 L33: 2.2020 L12: -0.5116 REMARK 3 L13: -1.0920 L23: 0.7537 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.4058 S13: 0.6975 REMARK 3 S21: -0.2292 S22: 0.0273 S23: 0.2235 REMARK 3 S31: -0.3367 S32: -0.0276 S33: -0.0197 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 164 A 187 REMARK 3 RESIDUE RANGE : A 188 A 203 REMARK 3 RESIDUE RANGE : A 204 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9582 -16.1484 -23.6883 REMARK 3 T TENSOR REMARK 3 T11: 0.0374 T22: -0.0987 REMARK 3 T33: 0.2211 T12: 0.0421 REMARK 3 T13: 0.0640 T23: -0.0778 REMARK 3 L TENSOR REMARK 3 L11: 2.9731 L22: 2.2401 REMARK 3 L33: 0.7306 L12: 0.8649 REMARK 3 L13: -0.9333 L23: -0.2473 REMARK 3 S TENSOR REMARK 3 S11: 0.1201 S12: -0.3068 S13: 0.7342 REMARK 3 S21: 0.4484 S22: -0.0708 S23: 0.5015 REMARK 3 S31: 0.0236 S32: -0.1190 S33: -0.0493 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, TLS REMARK 4 REMARK 4 3DD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28380 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 43.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38000 REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1OYR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, K/NA TARTRATE, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 43.37500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.04257 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 59.69333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 43.37500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.04257 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 59.69333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 43.37500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.04257 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.69333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 43.37500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.04257 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 59.69333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 43.37500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.04257 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.69333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 43.37500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.04257 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.69333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.08514 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 119.38667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 50.08514 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 119.38667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 50.08514 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 119.38667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 50.08514 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 119.38667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 50.08514 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 119.38667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 50.08514 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 119.38667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -496.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -43.37500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -75.12770 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 43.37500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -75.12770 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 43.37500 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -25.04257 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -59.69333 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 -100.17027 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -59.69333 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 -43.37500 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 -25.04257 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -59.69333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 556 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 615 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 80 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PRO A 49 CB CG REMARK 480 GLN A 72 CG CD OE1 NE2 REMARK 480 GLU A 168 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 49 CB - CA - C ANGL. DEV. = 13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 82 142.00 -178.11 REMARK 500 ASP A 122 49.58 -143.61 REMARK 500 GLU A 168 117.96 -37.45 REMARK 500 ASP A 175 76.44 56.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 306 DBREF 3DD6 A 1 245 UNP Q81LA9 RNPH_BACAN 1 245 SEQADV 3DD6 MET A -9 UNP Q81LA9 EXPRESSION TAG SEQADV 3DD6 GLY A -8 UNP Q81LA9 EXPRESSION TAG SEQADV 3DD6 SER A -7 UNP Q81LA9 EXPRESSION TAG SEQADV 3DD6 SER A -6 UNP Q81LA9 EXPRESSION TAG SEQADV 3DD6 HIS A -5 UNP Q81LA9 EXPRESSION TAG SEQADV 3DD6 HIS A -4 UNP Q81LA9 EXPRESSION TAG SEQADV 3DD6 HIS A -3 UNP Q81LA9 EXPRESSION TAG SEQADV 3DD6 HIS A -2 UNP Q81LA9 EXPRESSION TAG SEQADV 3DD6 HIS A -1 UNP Q81LA9 EXPRESSION TAG SEQADV 3DD6 HIS A 0 UNP Q81LA9 EXPRESSION TAG SEQRES 1 A 255 MET GLY SER SER HIS HIS HIS HIS HIS HIS MET ARG VAL SEQRES 2 A 255 ASP GLY ARG GLU LYS THR GLU LEU ARG HIS ILE HIS ILE SEQRES 3 A 255 HIS THR ASN TYR LEU LYS HIS PRO GLU GLY SER VAL LEU SEQRES 4 A 255 ILE GLU VAL GLY ASP THR LYS VAL ILE CYS SER ALA THR SEQRES 5 A 255 ILE GLU GLU ARG VAL PRO PRO PHE MET ARG GLY GLU GLY SEQRES 6 A 255 LYS GLY TRP VAL THR ALA GLU TYR ALA MET ILE PRO ARG SEQRES 7 A 255 ALA THR GLU GLN ARG THR ILE ARG GLU SER SER LYS GLY SEQRES 8 A 255 LYS VAL THR GLY ARG THR MET GLU ILE GLN ARG LEU ILE SEQRES 9 A 255 GLY ARG ALA LEU ARG ALA VAL VAL ASP LEU GLU ALA LEU SEQRES 10 A 255 GLY GLU ARG THR VAL TRP ILE ASP CYS ASP VAL ILE GLN SEQRES 11 A 255 ALA ASP GLY GLY THR ARG THR ALA SER ILE THR GLY ALA SEQRES 12 A 255 TYR VAL ALA MET VAL LEU ALA PHE GLU LYS LEU LEU GLN SEQRES 13 A 255 ALA GLU LYS VAL SER LYS ILE PRO VAL LYS ASP TYR LEU SEQRES 14 A 255 ALA ALA THR SER VAL GLY ILE VAL GLU GLU GLN GLY VAL SEQRES 15 A 255 VAL LEU ASP LEU ASN TYR ALA GLU ASP SER LYS ALA ASP SEQRES 16 A 255 VAL ASP MET ASN VAL ILE MET THR GLY LYS GLY GLN PHE SEQRES 17 A 255 VAL GLU VAL GLN GLY THR GLY GLU GLU ALA THR PHE SER SEQRES 18 A 255 ARG ALA GLN LEU ASN GLU LEU LEU ASP ALA ALA GLU GLN SEQRES 19 A 255 GLY ILE PHE GLN LEU ILE ASP ILE GLN LYS GLU ALA LEU SEQRES 20 A 255 GLY ASP ILE VAL SER HIS ILE GLU HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 305 5 HET SO4 A 306 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 HOH *144(H2 O) HELIX 1 1 PRO A 48 ARG A 52 5 5 HELIX 2 2 THR A 84 VAL A 102 1 19 HELIX 3 3 ASP A 103 GLY A 108 1 6 HELIX 4 4 GLY A 124 ALA A 147 1 24 HELIX 5 5 ASN A 177 LYS A 183 1 7 HELIX 6 6 SER A 211 GLY A 238 1 28 HELIX 7 7 ASP A 239 ILE A 244 5 6 SHEET 1 A 5 ILE A 14 THR A 18 0 SHEET 2 A 5 GLY A 26 VAL A 32 -1 O LEU A 29 N HIS A 17 SHEET 3 A 5 THR A 35 GLU A 44 -1 O THR A 35 N VAL A 32 SHEET 4 A 5 THR A 111 GLN A 120 -1 O TRP A 113 N THR A 42 SHEET 5 A 5 TRP A 58 MET A 65 1 N ALA A 64 O VAL A 118 SHEET 1 B 4 GLY A 171 LEU A 174 0 SHEET 2 B 4 LEU A 159 VAL A 167 -1 N VAL A 167 O GLY A 171 SHEET 3 B 4 ALA A 184 THR A 193 -1 O MET A 188 N VAL A 164 SHEET 4 B 4 PHE A 198 GLY A 205 -1 O VAL A 199 N ILE A 191 SITE 1 AC1 4 ARG A 86 GLY A 124 THR A 125 ARG A 126 SITE 1 AC2 4 ARG A 86 ARG A 92 ARG A 126 HOH A 549 SITE 1 AC3 6 TRP A 58 THR A 60 ARG A 99 HOH A 505 SITE 2 AC3 6 HOH A 520 HOH A 573 SITE 1 AC4 6 LYS A 56 LEU A 104 GLU A 105 LYS A 156 SITE 2 AC4 6 GLU A 207 HOH A 529 SITE 1 AC5 4 ARG A 6 ARG A 12 ASN A 177 HOH A 617 CRYST1 86.750 86.750 179.080 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011527 0.006655 0.000000 0.00000 SCALE2 0.000000 0.013311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005584 0.00000