HEADER TRANSFERASE 05-JUN-08 3DDD TITLE CRYSTAL STRUCTURE OF A PUTATIVE ACETYLTRANSFERASE (NP_142035.1) FROM TITLE 2 PYROCOCCUS HORIKOSHII AT 2.25 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_COMMON: ARCHAEA; SOURCE 4 ORGANISM_TAXID: 53953; SOURCE 5 GENE: NP_142035.1, PH0012; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_142035.1, A PUTATIVE ACETYLTRANSFERASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, ACETYLTRANSFERASE (GNAT) FAMILY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3DDD 1 REMARK SEQADV REVDAT 5 24-JUL-19 3DDD 1 REMARK LINK REVDAT 4 25-OCT-17 3DDD 1 REMARK REVDAT 3 13-JUL-11 3DDD 1 VERSN REVDAT 2 24-FEB-09 3DDD 1 VERSN REVDAT 1 24-JUN-08 3DDD 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE ACETYLTRANSFERASE JRNL TITL 2 (NP_142035.1) FROM PYROCOCCUS HORIKOSHII AT 2.25 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1154 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1561 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2253 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 38.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.80000 REMARK 3 B22 (A**2) : -1.80000 REMARK 3 B33 (A**2) : 3.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.298 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2446 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1756 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3301 ; 1.635 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4236 ; 0.957 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 6.586 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;28.615 ;22.566 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 438 ;15.522 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;19.683 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 345 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2700 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 528 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 436 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1862 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1163 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1342 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 148 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.160 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.317 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.139 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1585 ; 2.035 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 589 ; 0.473 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2330 ; 2.894 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1104 ; 5.384 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 971 ; 6.637 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -11 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3437 4.7224 -0.1209 REMARK 3 T TENSOR REMARK 3 T11: -0.0831 T22: -0.0627 REMARK 3 T33: -0.0812 T12: 0.0092 REMARK 3 T13: 0.0173 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 0.9550 L22: 2.1622 REMARK 3 L33: 0.6468 L12: 0.0521 REMARK 3 L13: 0.0092 L23: 0.3372 REMARK 3 S TENSOR REMARK 3 S11: -0.0525 S12: -0.0461 S13: -0.0518 REMARK 3 S21: 0.0360 S22: -0.0001 S23: -0.0420 REMARK 3 S31: 0.0176 S32: -0.0068 S33: 0.0526 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 (1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 (2). ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 (3). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 (4). ONE COENZYME A (COA) MONOMER WAS MODELED BASED REMARK 3 ON THE PRESENCE OF CLEAR AND CONCLUSIVE ELECTRON DENSITY. REMARK 3 (5). ETHYLENE GLYCOL (EDO) MOLECULES FROM CRYO SOLUTION REMARK 3 WERE MODELED. REMARK 3 (6). RESIDUES -5 THROUGH -11 OF THE N-TERMINAL PURIFICATION REMARK 3 TAG ARE LOCATED IN POOR DENSITY. REMARK 4 REMARK 4 3DDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22597 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 29.037 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : 0.12900 REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.81500 REMARK 200 R SYM FOR SHELL (I) : 0.81500 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M SODIUM CITRATE, 0.3M SODIUM REMARK 280 CHLORIDE, 0.1M TRIS PH 7.0, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.37800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.83650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.83650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.06700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.83650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.83650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.68900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.83650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.83650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.06700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.83650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.83650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.68900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.37800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER REMARK 300 AS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -11 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 119 CE NZ REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 140 CD OE1 OE2 REMARK 470 LYS A 147 CD CE NZ REMARK 470 LYS A 158 CE NZ REMARK 470 LYS A 193 CE NZ REMARK 470 LYS A 227 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -10 -68.04 -155.67 REMARK 500 ASP A 53 -10.86 68.45 REMARK 500 TYR A 64 -159.13 -113.75 REMARK 500 GLU A 123 -80.32 -103.06 REMARK 500 LYS A 137 110.40 -177.06 REMARK 500 GLU A 182 -141.18 54.26 REMARK 500 ARG A 191 -126.32 54.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379751 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 3DDD A 1 269 UNP O57768 O57768_PYRHO 1 269 SEQADV 3DDD MSE A -18 UNP O57768 EXPRESSION TAG SEQADV 3DDD GLY A -17 UNP O57768 EXPRESSION TAG SEQADV 3DDD SER A -16 UNP O57768 EXPRESSION TAG SEQADV 3DDD ASP A -15 UNP O57768 EXPRESSION TAG SEQADV 3DDD LYS A -14 UNP O57768 EXPRESSION TAG SEQADV 3DDD ILE A -13 UNP O57768 EXPRESSION TAG SEQADV 3DDD HIS A -12 UNP O57768 EXPRESSION TAG SEQADV 3DDD HIS A -11 UNP O57768 EXPRESSION TAG SEQADV 3DDD HIS A -10 UNP O57768 EXPRESSION TAG SEQADV 3DDD HIS A -9 UNP O57768 EXPRESSION TAG SEQADV 3DDD HIS A -8 UNP O57768 EXPRESSION TAG SEQADV 3DDD HIS A -7 UNP O57768 EXPRESSION TAG SEQADV 3DDD GLU A -6 UNP O57768 EXPRESSION TAG SEQADV 3DDD ASN A -5 UNP O57768 EXPRESSION TAG SEQADV 3DDD LEU A -4 UNP O57768 EXPRESSION TAG SEQADV 3DDD TYR A -3 UNP O57768 EXPRESSION TAG SEQADV 3DDD PHE A -2 UNP O57768 EXPRESSION TAG SEQADV 3DDD GLN A -1 UNP O57768 EXPRESSION TAG SEQADV 3DDD GLY A 0 UNP O57768 EXPRESSION TAG SEQRES 1 A 288 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 288 ASN LEU TYR PHE GLN GLY MSE ILE ILE ARG TYR ALA THR SEQRES 3 A 288 PRO ASP ASP ILE GLU ASP MSE VAL SER ILE PHE ILE ASP SEQRES 4 A 288 ALA TYR ASN PHE PRO GLY PRO ARG GLU SER VAL LYS SER SEQRES 5 A 288 SER PHE GLU ILE SER LEU GLU VAL GLN PRO ASP GLY CYS SEQRES 6 A 288 LEU LEU ALA PHE LEU LYS ASP GLU PRO VAL GLY MSE GLY SEQRES 7 A 288 CYS ILE PHE PHE TYR ASN LYS GLN ALA TRP ILE GLY LEU SEQRES 8 A 288 MSE GLY VAL LYS LYS ALA TYR GLN ARG ARG GLY ILE GLY SEQRES 9 A 288 THR GLU VAL PHE ARG ARG LEU LEU GLU ILE GLY ARG ARG SEQRES 10 A 288 LYS VAL ASP THR ILE ARG LEU ASP ALA SER SER GLN GLY SEQRES 11 A 288 TYR GLY LEU TYR LYS LYS PHE LYS PHE VAL ASP GLU TYR SEQRES 12 A 288 ARG THR VAL ARG TYR GLU LEU MSE GLU ARG PRO ILE LYS SEQRES 13 A 288 ARG VAL GLU GLY VAL VAL GLU VAL ASN LYS ILE PRO ASN SEQRES 14 A 288 TRP VAL LYS GLU ILE ASP LYS LYS ALA PHE GLY ASP ASP SEQRES 15 A 288 ARG ILE ARG VAL LEU GLU ALA TYR MSE ARG ARG GLY ALA SEQRES 16 A 288 ARG LEU LEU CYS ALA GLU ASN GLU GLY PHE GLY LEU VAL SEQRES 17 A 288 TYR ARG GLY LYS ILE GLY PRO LEU VAL ALA ASP SER PRO SEQRES 18 A 288 ARG VAL ALA GLU LYS ILE LEU LEU LYS ALA PHE GLN LEU SEQRES 19 A 288 GLY ALA ARG GLU ILE ILE ILE PRO GLU VAL ASN LYS ASP SEQRES 20 A 288 ALA LEU GLU LEU ILE LYS ILE PHE LYS PRO SER GLN VAL SEQRES 21 A 288 THR SER CYS MSE ARG MSE ARG LEU GLY SER LYS ILE GLU SEQRES 22 A 288 GLU LYS VAL ASP ILE TYR TYR GLY ILE LEU ALA TYR ALA SEQRES 23 A 288 LYS GLY MODRES 3DDD MSE A 1 MET SELENOMETHIONINE MODRES 3DDD MSE A 14 MET SELENOMETHIONINE MODRES 3DDD MSE A 58 MET SELENOMETHIONINE MODRES 3DDD MSE A 73 MET SELENOMETHIONINE MODRES 3DDD MSE A 132 MET SELENOMETHIONINE MODRES 3DDD MSE A 172 MET SELENOMETHIONINE MODRES 3DDD MSE A 245 MET SELENOMETHIONINE MODRES 3DDD MSE A 247 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 14 8 HET MSE A 58 8 HET MSE A 73 8 HET MSE A 132 8 HET MSE A 172 8 HET MSE A 245 8 HET MSE A 247 8 HET COA A 300 48 HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HETNAM MSE SELENOMETHIONINE HETNAM COA COENZYME A HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *175(H2 O) HELIX 1 1 THR A 7 ASP A 9 5 3 HELIX 2 2 ASP A 10 ASN A 23 1 14 HELIX 3 3 PRO A 27 GLN A 42 1 16 HELIX 4 4 LYS A 77 GLN A 80 5 4 HELIX 5 5 GLY A 83 VAL A 100 1 18 HELIX 6 6 GLY A 111 PHE A 118 1 8 HELIX 7 7 PRO A 149 GLY A 161 1 13 HELIX 8 8 ARG A 164 ARG A 174 1 11 HELIX 9 9 SER A 201 LEU A 215 1 15 HELIX 10 10 ASN A 226 LYS A 234 1 9 HELIX 11 11 ILE A 235 LYS A 237 5 3 HELIX 12 12 LYS A 256 ASP A 258 5 3 SHEET 1 A 8 ILE A 2 TYR A 5 0 SHEET 2 A 8 CYS A 46 LEU A 51 -1 O PHE A 50 N ILE A 2 SHEET 3 A 8 GLU A 54 PHE A 63 -1 O GLY A 57 N ALA A 49 SHEET 4 A 8 GLN A 67 VAL A 75 -1 O GLY A 74 N MSE A 58 SHEET 5 A 8 THR A 102 ALA A 107 1 O ARG A 104 N ALA A 68 SHEET 6 A 8 SER A 239 GLY A 250 -1 O MSE A 245 N ALA A 107 SHEET 7 A 8 VAL A 121 GLU A 130 -1 N ARG A 128 O VAL A 241 SHEET 8 A 8 GLU A 219 PRO A 223 -1 O ILE A 220 N TYR A 129 SHEET 1 B 5 VAL A 142 VAL A 145 0 SHEET 2 B 5 ARG A 177 ALA A 181 -1 O CYS A 180 N VAL A 143 SHEET 3 B 5 GLY A 185 TYR A 190 -1 O GLY A 187 N LEU A 179 SHEET 4 B 5 LYS A 193 ALA A 199 -1 O VAL A 198 N PHE A 186 SHEET 5 B 5 TYR A 260 GLY A 262 -1 O TYR A 261 N LEU A 197 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ILE A 2 1555 1555 1.32 LINK C ASP A 13 N MSE A 14 1555 1555 1.32 LINK C MSE A 14 N VAL A 15 1555 1555 1.34 LINK C GLY A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N GLY A 59 1555 1555 1.33 LINK C LEU A 72 N MSE A 73 1555 1555 1.34 LINK C MSE A 73 N GLY A 74 1555 1555 1.33 LINK C LEU A 131 N MSE A 132 1555 1555 1.32 LINK C MSE A 132 N GLU A 133 1555 1555 1.33 LINK C TYR A 171 N MSE A 172 1555 1555 1.32 LINK C MSE A 172 N ARG A 173 1555 1555 1.33 LINK C CYS A 244 N MSE A 245 1555 1555 1.32 LINK C MSE A 245 N ARG A 246 1555 1555 1.32 LINK C ARG A 246 N MSE A 247 1555 1555 1.33 LINK C MSE A 247 N ARG A 248 1555 1555 1.33 CISPEP 1 GLY A 195 PRO A 196 0 -5.68 SITE 1 AC1 21 ALA A 21 TYR A 22 GLY A 74 GLN A 80 SITE 2 AC1 21 ARG A 81 ARG A 82 GLY A 83 GLY A 85 SITE 3 AC1 21 THR A 86 SER A 108 GLN A 110 GLY A 111 SITE 4 AC1 21 GLY A 113 LEU A 114 TYR A 115 LYS A 117 SITE 5 AC1 21 HOH A 313 HOH A 346 HOH A 427 HOH A 450 SITE 6 AC1 21 HOH A 466 SITE 1 AC2 3 ILE A 3 ARG A 91 HOH A 324 SITE 1 AC3 6 TYR A -3 GLY A 175 ARG A 177 TYR A 190 SITE 2 AC3 6 ARG A 191 HOH A 374 SITE 1 AC4 6 ARG A 97 ASP A 101 ILE A 103 LEU A 249 SITE 2 AC4 6 GLY A 250 HOH A 414 SITE 1 AC5 5 ASN A -5 HIS A -7 HIS A -8 LEU A 215 SITE 2 AC5 5 HOH A 452 SITE 1 AC6 5 ARG A 97 ARG A 98 LYS A 99 ASP A 101 SITE 2 AC6 5 HOH A 459 CRYST1 113.673 113.673 70.756 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008797 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014133 0.00000