HEADER HYDROLASE 05-JUN-08 3DDH TITLE THE STRUCTURE OF A PUTATIVE HALOACID DEHALOGENASE-LIKE FAMILY TITLE 2 HYDROLASE FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HALOACID DEHALOGENASE-LIKE FAMILY HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: BT_2180; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS HYDROLASE, HAD SUPERFAMILY, BACTEROIDES THETAIOTAOMICRON, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,E.DUGGAN,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 5 25-OCT-17 3DDH 1 REMARK REVDAT 4 16-APR-14 3DDH 1 REMARK REVDAT 3 13-JUL-11 3DDH 1 VERSN REVDAT 2 24-FEB-09 3DDH 1 VERSN REVDAT 1 30-SEP-08 3DDH 0 JRNL AUTH M.E.CUFF,E.DUGGAN,J.ABDULLAH,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A PUTATIVE HALOACID DEHALOGENASE-LIKE JRNL TITL 2 FAMILY HYDROLASE FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 31604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1595 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2031 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3565 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.29000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.423 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3659 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2502 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4936 ; 1.436 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6187 ; 0.925 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 5.828 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;38.277 ;25.828 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 709 ;13.769 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.374 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3940 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 655 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 768 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2529 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1794 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1817 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 253 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.063 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 58 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2468 ; 1.183 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 918 ; 0.243 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3645 ; 1.603 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1525 ; 2.687 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1289 ; 3.959 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4215 4.2898 14.5956 REMARK 3 T TENSOR REMARK 3 T11: -0.0898 T22: -0.0256 REMARK 3 T33: -0.0856 T12: -0.0250 REMARK 3 T13: 0.0687 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.9970 L22: 1.9137 REMARK 3 L33: 1.0769 L12: -0.3248 REMARK 3 L13: 0.0093 L23: 0.4323 REMARK 3 S TENSOR REMARK 3 S11: 0.1522 S12: 0.0861 S13: 0.0144 REMARK 3 S21: -0.1659 S22: -0.0707 S23: -0.1673 REMARK 3 S31: -0.1546 S32: 0.0907 S33: -0.0815 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 231 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9015 11.5186 38.6249 REMARK 3 T TENSOR REMARK 3 T11: -0.0904 T22: -0.0889 REMARK 3 T33: -0.0600 T12: 0.0147 REMARK 3 T13: 0.0320 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.4406 L22: 0.8189 REMARK 3 L33: 1.3165 L12: -0.0911 REMARK 3 L13: 0.3302 L23: -0.4635 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: -0.0298 S13: 0.0391 REMARK 3 S21: -0.0252 S22: 0.0284 S23: -0.0468 REMARK 3 S31: -0.1285 S32: 0.0344 S33: -0.0517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97855 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31723 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.44300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE, DM 5.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M HEPES PH7, 25% PEG REMARK 280 3350, 3% D(+) TREHALOSE DIHYDRATE , PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.05950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.60600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.11100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.60600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.05950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.11100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE DIMER IN THE AU IS LIKELY TO BE RELEVANT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 VAL A 208 REMARK 465 THR A 209 REMARK 465 GLU A 210 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 VAL B 202 REMARK 465 MSE B 203 REMARK 465 TRP B 204 REMARK 465 LYS B 205 REMARK 465 HIS B 206 REMARK 465 GLU B 207 REMARK 465 VAL B 208 REMARK 465 THR B 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS B 2 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 156 OE1 GLU B 159 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 -62.53 -102.18 REMARK 500 THR A 15 -52.31 -122.54 REMARK 500 HIS A 148 133.26 -175.79 REMARK 500 HIS A 206 83.55 -62.63 REMARK 500 ALA B 12 -66.22 -98.36 REMARK 500 ASN B 19 -49.21 -137.20 REMARK 500 ILE B 185 -60.53 -107.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 232 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD2 REMARK 620 2 ASP A 13 O 93.0 REMARK 620 3 ASN A 179 OD1 87.3 96.7 REMARK 620 4 HOH A 236 O 88.8 177.5 85.0 REMARK 620 5 HOH A 247 O 178.4 86.4 91.3 91.8 REMARK 620 6 HOH A 325 O 92.4 93.9 169.4 84.4 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 234 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 129 OD1 REMARK 620 2 ASP A 129 OD2 49.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 232 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 11 OD2 REMARK 620 2 ASP B 13 O 91.5 REMARK 620 3 ASN B 179 OD1 92.2 91.9 REMARK 620 4 HOH B 449 O 94.1 173.6 90.9 REMARK 620 5 HOH B 452 O 95.4 91.3 171.7 85.2 REMARK 620 6 HOH B 444 O 173.9 82.5 88.8 91.8 84.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 233 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 488 O REMARK 620 2 HOH B 489 O 71.5 REMARK 620 3 HOH B 490 O 93.7 153.1 REMARK 620 4 HOH A 354 O 165.4 98.2 91.6 REMARK 620 5 HOH B 475 O 82.2 75.3 80.7 85.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 235 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC81699 RELATED DB: TARGETDB DBREF 3DDH A 2 231 UNP Q8A5Q8 Q8A5Q8_BACTN 2 231 DBREF 3DDH B 2 231 UNP Q8A5Q8 Q8A5Q8_BACTN 2 231 SEQADV 3DDH SER A -2 UNP Q8A5Q8 EXPRESSION TAG SEQADV 3DDH ASN A -1 UNP Q8A5Q8 EXPRESSION TAG SEQADV 3DDH ALA A 0 UNP Q8A5Q8 EXPRESSION TAG SEQADV 3DDH MSE A 1 UNP Q8A5Q8 EXPRESSION TAG SEQADV 3DDH SER B -2 UNP Q8A5Q8 EXPRESSION TAG SEQADV 3DDH ASN B -1 UNP Q8A5Q8 EXPRESSION TAG SEQADV 3DDH ALA B 0 UNP Q8A5Q8 EXPRESSION TAG SEQADV 3DDH MSE B 1 UNP Q8A5Q8 EXPRESSION TAG SEQRES 1 A 234 SER ASN ALA MSE LYS GLU LEU ILE LYS VAL ILE ALA PHE SEQRES 2 A 234 ASP ALA ASP ASP THR LEU TRP SER ASN GLU PRO PHE PHE SEQRES 3 A 234 GLN GLU VAL GLU LYS GLN TYR THR ASP LEU LEU LYS PRO SEQRES 4 A 234 TYR GLY THR SER LYS GLU ILE SER ALA ALA LEU PHE GLN SEQRES 5 A 234 THR GLU MSE ASN ASN LEU GLN ILE LEU GLY TYR GLY ALA SEQRES 6 A 234 LYS ALA PHE THR ILE SER MSE VAL GLU THR ALA LEU GLN SEQRES 7 A 234 ILE SER ASN GLY LYS ILE ALA ALA ASP ILE ILE ARG GLN SEQRES 8 A 234 ILE VAL ASP LEU GLY LYS SER LEU LEU LYS MSE PRO ILE SEQRES 9 A 234 GLU LEU LEU PRO GLY VAL LYS GLU THR LEU LYS THR LEU SEQRES 10 A 234 LYS GLU THR GLY LYS TYR LYS LEU VAL VAL ALA THR LYS SEQRES 11 A 234 GLY ASP LEU LEU ASP GLN GLU ASN LYS LEU GLU ARG SER SEQRES 12 A 234 GLY LEU SER PRO TYR PHE ASP HIS ILE GLU VAL MSE SER SEQRES 13 A 234 ASP LYS THR GLU LYS GLU TYR LEU ARG LEU LEU SER ILE SEQRES 14 A 234 LEU GLN ILE ALA PRO SER GLU LEU LEU MSE VAL GLY ASN SEQRES 15 A 234 SER PHE LYS SER ASP ILE GLN PRO VAL LEU SER LEU GLY SEQRES 16 A 234 GLY TYR GLY VAL HIS ILE PRO PHE GLU VAL MSE TRP LYS SEQRES 17 A 234 HIS GLU VAL THR GLU THR PHE ALA HIS GLU ARG LEU LYS SEQRES 18 A 234 GLN VAL LYS ARG LEU ASP ASP LEU LEU SER LEU LEU GLY SEQRES 1 B 234 SER ASN ALA MSE LYS GLU LEU ILE LYS VAL ILE ALA PHE SEQRES 2 B 234 ASP ALA ASP ASP THR LEU TRP SER ASN GLU PRO PHE PHE SEQRES 3 B 234 GLN GLU VAL GLU LYS GLN TYR THR ASP LEU LEU LYS PRO SEQRES 4 B 234 TYR GLY THR SER LYS GLU ILE SER ALA ALA LEU PHE GLN SEQRES 5 B 234 THR GLU MSE ASN ASN LEU GLN ILE LEU GLY TYR GLY ALA SEQRES 6 B 234 LYS ALA PHE THR ILE SER MSE VAL GLU THR ALA LEU GLN SEQRES 7 B 234 ILE SER ASN GLY LYS ILE ALA ALA ASP ILE ILE ARG GLN SEQRES 8 B 234 ILE VAL ASP LEU GLY LYS SER LEU LEU LYS MSE PRO ILE SEQRES 9 B 234 GLU LEU LEU PRO GLY VAL LYS GLU THR LEU LYS THR LEU SEQRES 10 B 234 LYS GLU THR GLY LYS TYR LYS LEU VAL VAL ALA THR LYS SEQRES 11 B 234 GLY ASP LEU LEU ASP GLN GLU ASN LYS LEU GLU ARG SER SEQRES 12 B 234 GLY LEU SER PRO TYR PHE ASP HIS ILE GLU VAL MSE SER SEQRES 13 B 234 ASP LYS THR GLU LYS GLU TYR LEU ARG LEU LEU SER ILE SEQRES 14 B 234 LEU GLN ILE ALA PRO SER GLU LEU LEU MSE VAL GLY ASN SEQRES 15 B 234 SER PHE LYS SER ASP ILE GLN PRO VAL LEU SER LEU GLY SEQRES 16 B 234 GLY TYR GLY VAL HIS ILE PRO PHE GLU VAL MSE TRP LYS SEQRES 17 B 234 HIS GLU VAL THR GLU THR PHE ALA HIS GLU ARG LEU LYS SEQRES 18 B 234 GLN VAL LYS ARG LEU ASP ASP LEU LEU SER LEU LEU GLY MODRES 3DDH MSE A 1 MET SELENOMETHIONINE MODRES 3DDH MSE A 52 MET SELENOMETHIONINE MODRES 3DDH MSE A 69 MET SELENOMETHIONINE MODRES 3DDH MSE A 99 MET SELENOMETHIONINE MODRES 3DDH MSE A 152 MET SELENOMETHIONINE MODRES 3DDH MSE A 176 MET SELENOMETHIONINE MODRES 3DDH MSE A 203 MET SELENOMETHIONINE MODRES 3DDH MSE B 1 MET SELENOMETHIONINE MODRES 3DDH MSE B 52 MET SELENOMETHIONINE MODRES 3DDH MSE B 69 MET SELENOMETHIONINE MODRES 3DDH MSE B 99 MET SELENOMETHIONINE MODRES 3DDH MSE B 152 MET SELENOMETHIONINE MODRES 3DDH MSE B 176 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 52 8 HET MSE A 69 8 HET MSE A 99 8 HET MSE A 152 8 HET MSE A 176 8 HET MSE A 203 8 HET MSE B 1 8 HET MSE B 52 8 HET MSE B 69 8 HET MSE B 99 8 HET MSE B 152 8 HET MSE B 176 8 HET MG A 232 1 HET CL A 233 1 HET MG A 234 1 HET GOL A 235 6 HET MG B 232 1 HET MG B 233 1 HET CL B 234 1 HET GOL B 235 6 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 3 MG 4(MG 2+) FORMUL 4 CL 2(CL 1-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 11 HOH *342(H2 O) HELIX 1 1 ASN A 19 LEU A 34 1 16 HELIX 2 2 LYS A 35 GLY A 38 5 4 HELIX 3 3 THR A 39 ASN A 54 1 16 HELIX 4 4 ASN A 54 GLY A 59 1 6 HELIX 5 5 GLY A 61 SER A 77 1 17 HELIX 6 6 ALA A 82 LEU A 97 1 16 HELIX 7 7 GLY A 106 GLY A 118 1 13 HELIX 8 8 ASP A 129 SER A 140 1 12 HELIX 9 9 LEU A 142 PHE A 146 5 5 HELIX 10 10 THR A 156 GLN A 168 1 13 HELIX 11 11 ALA A 170 SER A 172 5 3 HELIX 12 12 ILE A 185 GLY A 192 1 8 HELIX 13 13 ARG A 222 ASP A 224 5 3 HELIX 14 14 ASP A 225 LEU A 230 1 6 HELIX 15 15 ASN B 19 LEU B 34 1 16 HELIX 16 16 LYS B 35 GLY B 38 5 4 HELIX 17 17 THR B 39 ASN B 54 1 16 HELIX 18 18 ASN B 54 GLY B 59 1 6 HELIX 19 19 GLY B 61 SER B 77 1 17 HELIX 20 20 ALA B 82 LEU B 97 1 16 HELIX 21 21 GLY B 106 GLY B 118 1 13 HELIX 22 22 ASP B 129 GLY B 141 1 13 HELIX 23 23 LEU B 142 PHE B 146 5 5 HELIX 24 24 THR B 156 LEU B 167 1 12 HELIX 25 25 ALA B 170 SER B 172 5 3 HELIX 26 26 SER B 180 ILE B 185 1 6 HELIX 27 27 ILE B 185 GLY B 192 1 8 HELIX 28 28 ARG B 222 ASP B 224 5 3 HELIX 29 29 ASP B 225 GLY B 231 1 7 SHEET 1 A 6 HIS A 148 MSE A 152 0 SHEET 2 A 6 LYS A 121 LYS A 127 1 N VAL A 124 O GLU A 150 SHEET 3 A 6 VAL A 7 PHE A 10 1 N ILE A 8 O LYS A 121 SHEET 4 A 6 LEU A 174 GLY A 178 1 O LEU A 175 N ALA A 9 SHEET 5 A 6 TYR A 194 HIS A 197 1 O TYR A 194 N LEU A 174 SHEET 6 A 6 LEU A 217 GLN A 219 1 O LYS A 218 N GLY A 195 SHEET 1 B 6 HIS B 148 MSE B 152 0 SHEET 2 B 6 LYS B 121 LYS B 127 1 N VAL B 124 O GLU B 150 SHEET 3 B 6 VAL B 7 PHE B 10 1 N ILE B 8 O LYS B 121 SHEET 4 B 6 LEU B 174 GLY B 178 1 O LEU B 175 N ALA B 9 SHEET 5 B 6 TYR B 194 HIS B 197 1 O TYR B 194 N LEU B 174 SHEET 6 B 6 LEU B 217 GLN B 219 1 O LYS B 218 N HIS B 197 LINK C ALA A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C GLU A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N ASN A 53 1555 1555 1.34 LINK C SER A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N VAL A 70 1555 1555 1.33 LINK C LYS A 98 N MSE A 99 1555 1555 1.33 LINK C MSE A 99 N PRO A 100 1555 1555 1.34 LINK C VAL A 151 N MSE A 152 1555 1555 1.31 LINK C MSE A 152 N SER A 153 1555 1555 1.34 LINK C LEU A 175 N MSE A 176 1555 1555 1.33 LINK C MSE A 176 N VAL A 177 1555 1555 1.32 LINK C VAL A 202 N MSE A 203 1555 1555 1.34 LINK C MSE A 203 N TRP A 204 1555 1555 1.34 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C GLU B 51 N MSE B 52 1555 1555 1.33 LINK C MSE B 52 N ASN B 53 1555 1555 1.33 LINK C SER B 68 N MSE B 69 1555 1555 1.32 LINK C MSE B 69 N VAL B 70 1555 1555 1.33 LINK C LYS B 98 N MSE B 99 1555 1555 1.33 LINK C MSE B 99 N PRO B 100 1555 1555 1.32 LINK C VAL B 151 N MSE B 152 1555 1555 1.32 LINK C MSE B 152 N SER B 153 1555 1555 1.33 LINK C LEU B 175 N MSE B 176 1555 1555 1.32 LINK C MSE B 176 N VAL B 177 1555 1555 1.33 LINK OD2 ASP A 11 MG MG A 232 1555 1555 1.90 LINK O ASP A 13 MG MG A 232 1555 1555 2.02 LINK OD1 ASP A 129 MG MG A 234 1555 1555 2.20 LINK OD1 ASN A 179 MG MG A 232 1555 1555 2.13 LINK OD2 ASP B 11 MG MG B 232 1555 1555 2.02 LINK O ASP B 13 MG MG B 232 1555 1555 2.05 LINK OD1 ASN B 179 MG MG B 232 1555 1555 2.01 LINK MG MG A 232 O HOH A 236 1555 1555 2.13 LINK MG MG A 232 O HOH A 247 1555 1555 2.19 LINK MG MG A 232 O HOH A 325 1555 1555 2.07 LINK MG MG B 232 O HOH B 449 1555 1555 1.98 LINK MG MG B 232 O HOH B 452 1555 1555 2.10 LINK MG MG B 232 O HOH B 444 1555 1555 2.15 LINK MG MG B 233 O HOH B 488 1555 1555 2.26 LINK MG MG B 233 O HOH B 489 1555 1555 2.31 LINK MG MG B 233 O HOH B 490 1555 1555 2.04 LINK MG MG B 233 O HOH A 354 1555 1555 2.09 LINK MG MG B 233 O HOH B 475 1555 1555 2.65 LINK OD2 ASP A 129 MG MG A 234 1555 1555 2.85 SITE 1 AC1 3 ASP A 11 ASP A 13 ASN A 179 SITE 1 AC2 3 ASP B 11 ASP B 13 ASN B 179 SITE 1 AC3 1 LYS B 158 SITE 1 AC4 3 ASP A 11 LYS A 127 LYS A 155 SITE 1 AC5 3 ASP B 11 LYS B 127 LYS B 155 SITE 1 AC6 6 TYR A 60 GLY A 61 LYS A 63 ALA A 64 SITE 2 AC6 6 ASP A 129 LYS B 63 SITE 1 AC7 5 GLU A 51 GLY A 59 TYR A 60 GLY A 61 SITE 2 AC7 5 PHE A 65 SITE 1 AC8 5 GLU B 51 GLY B 59 TYR B 60 GLY B 61 SITE 2 AC8 5 PHE B 65 CRYST1 36.119 104.222 121.212 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027686 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008250 0.00000