HEADER TRANSCRIPTION 09-JUN-08 3DEE TITLE CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TITLE 2 TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE REGULATORY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE FA 1090; SOURCE 3 ORGANISM_TAXID: 242231; SOURCE 4 ATCC: 700825; SOURCE 5 GENE: YP_208969.1, NGO1945; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE REGULATORY PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 01-FEB-23 3DEE 1 REMARK SEQADV REVDAT 7 24-JUL-19 3DEE 1 REMARK LINK REVDAT 6 25-OCT-17 3DEE 1 REMARK REVDAT 5 13-JUL-11 3DEE 1 VERSN REVDAT 4 10-NOV-10 3DEE 1 JRNL REVDAT 3 28-JUL-10 3DEE 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3DEE 1 VERSN REVDAT 1 05-AUG-08 3DEE 0 JRNL AUTH D.DAS,N.V.GRISHIN,A.KUMAR,D.CARLTON,C.BAKOLITSA,M.D.MILLER, JRNL AUTH 2 P.ABDUBEK,T.ASTAKHOVA,H.L.AXELROD,P.BURRA,C.CHEN,H.J.CHIU, JRNL AUTH 3 M.CHIU,T.CLAYTON,M.C.DELLER,L.DUAN,K.ELLROTT,D.ERNST, JRNL AUTH 4 C.L.FARR,J.FEUERHELM,A.GRZECHNIK,S.K.GRZECHNIK,J.C.GRANT, JRNL AUTH 5 G.W.HAN,L.JAROSZEWSKI,K.K.JIN,H.A.JOHNSON,H.E.KLOCK, JRNL AUTH 6 M.W.KNUTH,P.KOZBIAL,S.S.KRISHNA,D.MARCIANO,D.MCMULLAN, JRNL AUTH 7 A.T.MORSE,E.NIGOGHOSSIAN,A.NOPAKUN,L.OKACH,S.OOMMACHEN, JRNL AUTH 8 J.PAULSEN,C.PUCKETT,R.REYES,C.L.RIFE,N.SEFCOVIC,H.J.TIEN, JRNL AUTH 9 C.B.TRAME,H.VAN DEN BEDEM,D.WEEKES,T.WOOTEN,Q.XU, JRNL AUTH10 K.O.HODGSON,J.WOOLEY,M.A.ELSLIGER,A.M.DEACON,A.GODZIK, JRNL AUTH11 S.A.LESLEY,I.A.WILSON JRNL TITL THE STRUCTURE OF THE FIRST REPRESENTATIVE OF PFAM FAMILY JRNL TITL 2 PF09836 REVEALS A TWO-DOMAIN ORGANIZATION AND SUGGESTS JRNL TITL 3 INVOLVEMENT IN TRANSCRIPTIONAL REGULATION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1174 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944208 JRNL DOI 10.1107/S1744309109022672 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 NUMBER OF REFLECTIONS : 13555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 660 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1059 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1623 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 31.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.44000 REMARK 3 B22 (A**2) : 3.70000 REMARK 3 B33 (A**2) : -2.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.269 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1683 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1116 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2294 ; 1.535 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2718 ; 0.956 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 205 ; 3.139 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;32.706 ;24.578 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 277 ;11.499 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.332 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 251 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1878 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 355 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 381 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1120 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 840 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 784 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 76 ; 0.209 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.342 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 29 ; 0.213 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.206 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1137 ; 1.139 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 400 ; 0.238 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1637 ; 1.630 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 763 ; 0.920 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 654 ; 1.325 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3437 7.9975 20.7420 REMARK 3 T TENSOR REMARK 3 T11: -0.0590 T22: -0.1308 REMARK 3 T33: -0.0578 T12: 0.0324 REMARK 3 T13: -0.0092 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.4483 L22: 0.4741 REMARK 3 L33: 2.1115 L12: 1.1081 REMARK 3 L13: -1.7031 L23: -0.6458 REMARK 3 S TENSOR REMARK 3 S11: 0.1603 S12: 0.1961 S13: 0.0827 REMARK 3 S21: 0.0924 S22: 0.0184 S23: 0.0412 REMARK 3 S31: -0.0377 S32: 0.1443 S33: -0.1787 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. CHLORIDE AND IMIDAZOLE WERE MODELED BASED REMARK 3 ON CRYSTALLIZATION CONDITIONS. REMARK 3 5. THERE IS UNMODELED ELECTRON DENSITY NEAR RESIDUE A169, WHICH REMARK 3 COULD BE PART OF THE MISSING N-TERMINUS. REMARK 3 6. REFLECTIONS IN THE FOLLOWING RESOLUTION RANGES CORRESPONDING TO REMARK 3 ICE RINGS WERE OMITTED DURING INTEGRATION OF THE DIFFRACTION DATA: REMARK 3 3.97-3.82 A, 3.72-3.61 A, 3.50-3.39 A, 2.69-2.64 A AND 2.26-2.24 REMARK 3 A. REMARK 3 IN ADDITION, 14 UNUSUALLY STRONG REFLECTIONS WERE ALSO OMITTED REMARK 3 FROM THE DATA USED FOR FINAL REFINEMENT. REMARK 3 7. THE NOMINAL RESOLUTION IS 2.25 A WITH 2563 OBSERVED REFLECTIONS REMARK 3 BETWEEN 2.25-2.10 (88.8% COMPLETE FOR THIS SHELL) INCLUDED REMARK 3 IN THE REFINEMENT. REMARK 4 REMARK 4 3DEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.36 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97929 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 77.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : 0.47500 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 8.2% ETHANOL, REMARK 280 0.1M IMIDAZOLE PH 8.36, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.26100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.93950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.26100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.93950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE PROTOMER MAY FORM A DIMER BASED ON REMARK 300 CRYSTAL PACKING ANALYSIS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -37.59047 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 77.75963 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 GLN A 8 REMARK 465 TYR A 9 REMARK 465 GLN A 10 REMARK 465 HIS A 11 REMARK 465 ARG A 12 REMARK 465 PHE A 13 REMARK 465 SER A 14 REMARK 465 GLN A 15 REMARK 465 ALA A 16 REMARK 465 ILE A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 GLY A 20 REMARK 465 GLU A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 ASP A 24 REMARK 465 GLY A 25 REMARK 465 LEU A 26 REMARK 465 PRO A 27 REMARK 465 GLN A 28 REMARK 465 ASP A 29 REMARK 465 ARG A 30 REMARK 465 ALA A 231 REMARK 465 ILE A 232 REMARK 465 SER A 233 REMARK 465 GLU A 234 REMARK 465 ASN A 235 REMARK 465 MSE A 236 REMARK 465 GLU A 237 REMARK 465 GLY A 238 REMARK 465 ASN A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 SER A 242 REMARK 465 GLN A 243 REMARK 465 ASN A 244 REMARK 465 HIS A 245 REMARK 465 LEU A 246 REMARK 465 SER A 247 REMARK 465 ALA A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 36 CZ NH1 NH2 REMARK 470 ARG A 54 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 60 CD CE NZ REMARK 470 ARG A 71 NE CZ NH1 NH2 REMARK 470 GLN A 117 CD OE1 NE2 REMARK 470 ASP A 120 CG OD1 OD2 REMARK 470 LYS A 204 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 50 52.29 -113.73 REMARK 500 HIS A 149 -88.44 -123.80 REMARK 500 ASP A 150 35.11 -145.68 REMARK 500 ALA A 154 121.98 -170.20 REMARK 500 ALA A 188 137.98 -39.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 251 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 389948 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DNA SEQUENCING REMARK 999 OF THE CLONED CONSTRUCT SHOWS A LEUCINE AT POSITION 94 INSTEAD OF A REMARK 999 PROLINE. THE LEUCINE AT POSITION 94 IS SUPPORTED BY THE ELECTRON REMARK 999 DENSITY. DBREF 3DEE A 1 248 UNP Q5F5I0 Q5F5I0_NEIG1 1 248 SEQADV 3DEE GLY A 0 UNP Q5F5I0 EXPRESSION TAG SEQADV 3DEE LEU A 94 UNP Q5F5I0 PRO 94 SEE REMARK 999 SEQRES 1 A 249 GLY MET GLN PRO GLU THR SER ALA GLN TYR GLN HIS ARG SEQRES 2 A 249 PHE SER GLN ALA ILE ARG GLY GLY GLU ALA ALA ASP GLY SEQRES 3 A 249 LEU PRO GLN ASP ARG LEU ASN VAL TYR ILE ARG LEU ILE SEQRES 4 A 249 ARG ASN ASN ILE HIS SER PHE ILE ASP ARG CYS TYR THR SEQRES 5 A 249 GLU THR ARG GLN TYR PHE ASP SER LYS GLU TRP SER ARG SEQRES 6 A 249 LEU LYS GLU GLY PHE VAL ARG ASP ALA ARG ALA GLN THR SEQRES 7 A 249 PRO TYR PHE GLN GLU ILE PRO GLY GLU PHE LEU GLN TYR SEQRES 8 A 249 CYS GLN SER LEU PRO LEU SER ASP GLY ILE LEU ALA LEU SEQRES 9 A 249 MSE ASP PHE GLU TYR THR GLN LEU LEU ALA GLU VAL ALA SEQRES 10 A 249 GLN ILE PRO ASP ILE PRO ASP ILE HIS TYR SER ASN ASP SEQRES 11 A 249 SER LYS TYR THR PRO SER PRO ALA ALA PHE ILE ARG GLN SEQRES 12 A 249 TYR ARG TYR ASP VAL THR HIS ASP LEU GLN GLU ALA GLU SEQRES 13 A 249 THR ALA LEU LEU ILE TRP ARG ASN ALA GLU ASP ASP VAL SEQRES 14 A 249 MSE TYR GLN THR LEU ASP GLY PHE ASP MSE MSE LEU LEU SEQRES 15 A 249 GLU ILE MSE GLY SER SER ALA LEU SER PHE ASP THR LEU SEQRES 16 A 249 ALA GLN THR LEU VAL GLU PHE MSE PRO LYS ALA ASP ASN SEQRES 17 A 249 TRP LYS ASN ILE LEU LEU GLY LYS TRP SER GLY TRP ILE SEQRES 18 A 249 GLU GLN ARG ILE ILE ILE PRO SER LEU SER ALA ILE SER SEQRES 19 A 249 GLU ASN MSE GLU GLY ASN SER PRO SER GLN ASN HIS LEU SEQRES 20 A 249 SER ALA MODRES 3DEE MSE A 104 MET SELENOMETHIONINE MODRES 3DEE MSE A 169 MET SELENOMETHIONINE MODRES 3DEE MSE A 178 MET SELENOMETHIONINE MODRES 3DEE MSE A 179 MET SELENOMETHIONINE MODRES 3DEE MSE A 184 MET SELENOMETHIONINE MODRES 3DEE MSE A 202 MET SELENOMETHIONINE HET MSE A 104 8 HET MSE A 169 8 HET MSE A 178 8 HET MSE A 179 8 HET MSE A 184 8 HET MSE A 202 8 HET CL A 249 1 HET CL A 250 1 HET IMD A 251 5 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM IMD IMIDAZOLE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 CL 2(CL 1-) FORMUL 4 IMD C3 H5 N2 1+ FORMUL 5 HOH *95(H2 O) HELIX 1 1 ASN A 32 TYR A 50 1 19 HELIX 2 2 GLU A 52 PHE A 57 5 6 HELIX 3 3 ASP A 58 ASP A 72 1 15 HELIX 4 4 ALA A 73 THR A 77 5 5 HELIX 5 5 TYR A 79 GLN A 81 5 3 HELIX 6 6 GLU A 82 LEU A 94 1 13 HELIX 7 7 SER A 97 ALA A 116 1 20 HELIX 8 8 ASP A 174 SER A 187 1 14 HELIX 9 9 SER A 190 VAL A 199 1 10 HELIX 10 10 GLU A 200 MSE A 202 5 3 HELIX 11 11 ASP A 206 GLN A 222 1 17 SHEET 1 A 2 TYR A 132 PRO A 134 0 SHEET 2 A 2 ILE A 225 PRO A 227 -1 O ILE A 226 N THR A 133 SHEET 1 B 3 PHE A 139 TYR A 145 0 SHEET 2 B 3 GLU A 153 ARG A 162 -1 O THR A 156 N TYR A 143 SHEET 3 B 3 VAL A 168 THR A 172 -1 O MSE A 169 N TRP A 161 LINK C LEU A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N ASP A 105 1555 1555 1.32 LINK C VAL A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N TYR A 170 1555 1555 1.33 LINK C ASP A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N MSE A 179 1555 1555 1.32 LINK C MSE A 179 N LEU A 180 1555 1555 1.32 LINK C ILE A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N GLY A 185 1555 1555 1.33 LINK C PHE A 201 N MSE A 202 1555 1555 1.33 LINK C MSE A 202 N PRO A 203 1555 1555 1.34 CISPEP 1 LEU A 94 PRO A 95 0 -5.93 SITE 1 AC1 5 ASN A 32 GLU A 114 ARG A 162 ASP A 166 SITE 2 AC1 5 HOH A 324 CRYST1 106.522 31.879 86.369 90.00 115.80 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009388 0.000000 0.004539 0.00000 SCALE2 0.000000 0.031368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012860 0.00000