data_3DF8 # _entry.id 3DF8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DF8 pdb_00003df8 10.2210/pdb3df8/pdb RCSB RCSB047964 ? ? WWPDB D_1000047964 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_entry_details 5 3 'Structure model' pdbx_modification_feature 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3DF8 _pdbx_database_status.recvd_initial_deposition_date 2008-06-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC89000 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Tesar, C.' 2 'Moy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The crystal structure of a possible HxlR family transcriptional factor from Thermoplasma volcanium GSS1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tan, K.' 1 ? primary 'Tesar, C.' 2 ? primary 'Moy, S.' 3 ? primary 'Joachimiak, A.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'possible HxlR family transcriptional factor' 12519.714 1 ? ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 3 water nat water 18.015 84 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)LRYGDTEICIDPSESVLHLLGKKYT(MSE)LIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGL VERRSGQITTYALTEKG(MSE)NVRNSL(MSE)PLLQYISVLDRNGD ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMLRYGDTEICIDPSESVLHLLGKKYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQI TTYALTEKGMNVRNSLMPLLQYISVLDRNGD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC89000 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 LEU n 1 6 ARG n 1 7 TYR n 1 8 GLY n 1 9 ASP n 1 10 THR n 1 11 GLU n 1 12 ILE n 1 13 CYS n 1 14 ILE n 1 15 ASP n 1 16 PRO n 1 17 SER n 1 18 GLU n 1 19 SER n 1 20 VAL n 1 21 LEU n 1 22 HIS n 1 23 LEU n 1 24 LEU n 1 25 GLY n 1 26 LYS n 1 27 LYS n 1 28 TYR n 1 29 THR n 1 30 MSE n 1 31 LEU n 1 32 ILE n 1 33 ILE n 1 34 SER n 1 35 VAL n 1 36 LEU n 1 37 GLY n 1 38 ASN n 1 39 GLY n 1 40 SER n 1 41 THR n 1 42 ARG n 1 43 GLN n 1 44 ASN n 1 45 PHE n 1 46 ASN n 1 47 ASP n 1 48 ILE n 1 49 ARG n 1 50 SER n 1 51 SER n 1 52 ILE n 1 53 PRO n 1 54 GLY n 1 55 ILE n 1 56 SER n 1 57 SER n 1 58 THR n 1 59 ILE n 1 60 LEU n 1 61 SER n 1 62 ARG n 1 63 ARG n 1 64 ILE n 1 65 LYS n 1 66 ASP n 1 67 LEU n 1 68 ILE n 1 69 ASP n 1 70 SER n 1 71 GLY n 1 72 LEU n 1 73 VAL n 1 74 GLU n 1 75 ARG n 1 76 ARG n 1 77 SER n 1 78 GLY n 1 79 GLN n 1 80 ILE n 1 81 THR n 1 82 THR n 1 83 TYR n 1 84 ALA n 1 85 LEU n 1 86 THR n 1 87 GLU n 1 88 LYS n 1 89 GLY n 1 90 MSE n 1 91 ASN n 1 92 VAL n 1 93 ARG n 1 94 ASN n 1 95 SER n 1 96 LEU n 1 97 MSE n 1 98 PRO n 1 99 LEU n 1 100 LEU n 1 101 GLN n 1 102 TYR n 1 103 ILE n 1 104 SER n 1 105 VAL n 1 106 LEU n 1 107 ASP n 1 108 ARG n 1 109 ASN n 1 110 GLY n 1 111 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TV1295, TVG1336486' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain GSS1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermoplasma volcanium' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 50339 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 -2 SER SER A . n A 1 2 ASN 2 -1 -1 ASN ASN A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 LEU 5 2 2 LEU LEU A . n A 1 6 ARG 6 3 3 ARG ARG A . n A 1 7 TYR 7 4 4 TYR TYR A . n A 1 8 GLY 8 5 5 GLY GLY A . n A 1 9 ASP 9 6 6 ASP ASP A . n A 1 10 THR 10 7 7 THR THR A . n A 1 11 GLU 11 8 8 GLU GLU A . n A 1 12 ILE 12 9 9 ILE ILE A . n A 1 13 CYS 13 10 10 CYS CYS A . n A 1 14 ILE 14 11 11 ILE ILE A . n A 1 15 ASP 15 12 12 ASP ASP A . n A 1 16 PRO 16 13 13 PRO PRO A . n A 1 17 SER 17 14 14 SER SER A . n A 1 18 GLU 18 15 15 GLU GLU A . n A 1 19 SER 19 16 16 SER SER A . n A 1 20 VAL 20 17 17 VAL VAL A . n A 1 21 LEU 21 18 18 LEU LEU A . n A 1 22 HIS 22 19 19 HIS HIS A . n A 1 23 LEU 23 20 20 LEU LEU A . n A 1 24 LEU 24 21 21 LEU LEU A . n A 1 25 GLY 25 22 22 GLY GLY A . n A 1 26 LYS 26 23 23 LYS LYS A . n A 1 27 LYS 27 24 24 LYS LYS A . n A 1 28 TYR 28 25 25 TYR TYR A . n A 1 29 THR 29 26 26 THR THR A . n A 1 30 MSE 30 27 27 MSE MSE A . n A 1 31 LEU 31 28 28 LEU LEU A . n A 1 32 ILE 32 29 29 ILE ILE A . n A 1 33 ILE 33 30 30 ILE ILE A . n A 1 34 SER 34 31 31 SER SER A . n A 1 35 VAL 35 32 32 VAL VAL A . n A 1 36 LEU 36 33 33 LEU LEU A . n A 1 37 GLY 37 34 34 GLY GLY A . n A 1 38 ASN 38 35 35 ASN ASN A . n A 1 39 GLY 39 36 36 GLY GLY A . n A 1 40 SER 40 37 37 SER SER A . n A 1 41 THR 41 38 38 THR THR A . n A 1 42 ARG 42 39 39 ARG ARG A . n A 1 43 GLN 43 40 40 GLN GLN A . n A 1 44 ASN 44 41 41 ASN ASN A . n A 1 45 PHE 45 42 42 PHE PHE A . n A 1 46 ASN 46 43 43 ASN ASN A . n A 1 47 ASP 47 44 44 ASP ASP A . n A 1 48 ILE 48 45 45 ILE ILE A . n A 1 49 ARG 49 46 46 ARG ARG A . n A 1 50 SER 50 47 47 SER SER A . n A 1 51 SER 51 48 48 SER SER A . n A 1 52 ILE 52 49 49 ILE ILE A . n A 1 53 PRO 53 50 50 PRO PRO A . n A 1 54 GLY 54 51 51 GLY GLY A . n A 1 55 ILE 55 52 52 ILE ILE A . n A 1 56 SER 56 53 53 SER SER A . n A 1 57 SER 57 54 54 SER SER A . n A 1 58 THR 58 55 55 THR THR A . n A 1 59 ILE 59 56 56 ILE ILE A . n A 1 60 LEU 60 57 57 LEU LEU A . n A 1 61 SER 61 58 58 SER SER A . n A 1 62 ARG 62 59 59 ARG ARG A . n A 1 63 ARG 63 60 60 ARG ARG A . n A 1 64 ILE 64 61 61 ILE ILE A . n A 1 65 LYS 65 62 62 LYS LYS A . n A 1 66 ASP 66 63 63 ASP ASP A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 ILE 68 65 65 ILE ILE A . n A 1 69 ASP 69 66 66 ASP ASP A . n A 1 70 SER 70 67 67 SER SER A . n A 1 71 GLY 71 68 68 GLY GLY A . n A 1 72 LEU 72 69 69 LEU LEU A . n A 1 73 VAL 73 70 70 VAL VAL A . n A 1 74 GLU 74 71 71 GLU GLU A . n A 1 75 ARG 75 72 72 ARG ARG A . n A 1 76 ARG 76 73 73 ARG ARG A . n A 1 77 SER 77 74 74 SER SER A . n A 1 78 GLY 78 75 75 GLY GLY A . n A 1 79 GLN 79 76 76 GLN GLN A . n A 1 80 ILE 80 77 77 ILE ILE A . n A 1 81 THR 81 78 78 THR THR A . n A 1 82 THR 82 79 79 THR THR A . n A 1 83 TYR 83 80 80 TYR TYR A . n A 1 84 ALA 84 81 81 ALA ALA A . n A 1 85 LEU 85 82 82 LEU LEU A . n A 1 86 THR 86 83 83 THR THR A . n A 1 87 GLU 87 84 84 GLU GLU A . n A 1 88 LYS 88 85 85 LYS LYS A . n A 1 89 GLY 89 86 86 GLY GLY A . n A 1 90 MSE 90 87 87 MSE MSE A . n A 1 91 ASN 91 88 88 ASN ASN A . n A 1 92 VAL 92 89 89 VAL VAL A . n A 1 93 ARG 93 90 90 ARG ARG A . n A 1 94 ASN 94 91 91 ASN ASN A . n A 1 95 SER 95 92 92 SER SER A . n A 1 96 LEU 96 93 93 LEU LEU A . n A 1 97 MSE 97 94 94 MSE MSE A . n A 1 98 PRO 98 95 95 PRO PRO A . n A 1 99 LEU 99 96 96 LEU LEU A . n A 1 100 LEU 100 97 97 LEU LEU A . n A 1 101 GLN 101 98 98 GLN GLN A . n A 1 102 TYR 102 99 99 TYR TYR A . n A 1 103 ILE 103 100 100 ILE ILE A . n A 1 104 SER 104 101 101 SER SER A . n A 1 105 VAL 105 102 102 VAL VAL A . n A 1 106 LEU 106 103 103 LEU LEU A . n A 1 107 ASP 107 104 104 ASP ASP A . n A 1 108 ARG 108 105 105 ARG ARG A . n A 1 109 ASN 109 106 106 ASN ASN A . n A 1 110 GLY 110 107 ? ? ? A . n A 1 111 ASP 111 108 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 109 1 ACT ACT A . C 2 ACT 1 110 2 ACT ACT A . D 3 HOH 1 111 1 HOH HOH A . D 3 HOH 2 112 2 HOH HOH A . D 3 HOH 3 113 3 HOH HOH A . D 3 HOH 4 114 4 HOH HOH A . D 3 HOH 5 115 5 HOH HOH A . D 3 HOH 6 116 6 HOH HOH A . D 3 HOH 7 117 7 HOH HOH A . D 3 HOH 8 118 8 HOH HOH A . D 3 HOH 9 119 9 HOH HOH A . D 3 HOH 10 120 10 HOH HOH A . D 3 HOH 11 121 11 HOH HOH A . D 3 HOH 12 122 12 HOH HOH A . D 3 HOH 13 123 13 HOH HOH A . D 3 HOH 14 124 14 HOH HOH A . D 3 HOH 15 125 15 HOH HOH A . D 3 HOH 16 126 16 HOH HOH A . D 3 HOH 17 127 17 HOH HOH A . D 3 HOH 18 128 18 HOH HOH A . D 3 HOH 19 129 19 HOH HOH A . D 3 HOH 20 130 20 HOH HOH A . D 3 HOH 21 131 21 HOH HOH A . D 3 HOH 22 132 22 HOH HOH A . D 3 HOH 23 133 23 HOH HOH A . D 3 HOH 24 134 24 HOH HOH A . D 3 HOH 25 135 25 HOH HOH A . D 3 HOH 26 136 26 HOH HOH A . D 3 HOH 27 137 27 HOH HOH A . D 3 HOH 28 138 28 HOH HOH A . D 3 HOH 29 139 29 HOH HOH A . D 3 HOH 30 140 30 HOH HOH A . D 3 HOH 31 141 31 HOH HOH A . D 3 HOH 32 142 32 HOH HOH A . D 3 HOH 33 143 33 HOH HOH A . D 3 HOH 34 144 34 HOH HOH A . D 3 HOH 35 145 35 HOH HOH A . D 3 HOH 36 146 36 HOH HOH A . D 3 HOH 37 147 37 HOH HOH A . D 3 HOH 38 148 38 HOH HOH A . D 3 HOH 39 149 39 HOH HOH A . D 3 HOH 40 150 40 HOH HOH A . D 3 HOH 41 151 41 HOH HOH A . D 3 HOH 42 152 42 HOH HOH A . D 3 HOH 43 153 43 HOH HOH A . D 3 HOH 44 154 44 HOH HOH A . D 3 HOH 45 155 45 HOH HOH A . D 3 HOH 46 156 46 HOH HOH A . D 3 HOH 47 157 47 HOH HOH A . D 3 HOH 48 158 48 HOH HOH A . D 3 HOH 49 159 49 HOH HOH A . D 3 HOH 50 160 50 HOH HOH A . D 3 HOH 51 161 51 HOH HOH A . D 3 HOH 52 162 52 HOH HOH A . D 3 HOH 53 163 53 HOH HOH A . D 3 HOH 54 164 54 HOH HOH A . D 3 HOH 55 165 55 HOH HOH A . D 3 HOH 56 166 56 HOH HOH A . D 3 HOH 57 167 57 HOH HOH A . D 3 HOH 58 168 58 HOH HOH A . D 3 HOH 59 169 59 HOH HOH A . D 3 HOH 60 170 60 HOH HOH A . D 3 HOH 61 171 61 HOH HOH A . D 3 HOH 62 172 62 HOH HOH A . D 3 HOH 63 173 63 HOH HOH A . D 3 HOH 64 174 64 HOH HOH A . D 3 HOH 65 175 65 HOH HOH A . D 3 HOH 66 176 66 HOH HOH A . D 3 HOH 67 177 67 HOH HOH A . D 3 HOH 68 178 68 HOH HOH A . D 3 HOH 69 179 69 HOH HOH A . D 3 HOH 70 180 70 HOH HOH A . D 3 HOH 71 181 71 HOH HOH A . D 3 HOH 72 182 72 HOH HOH A . D 3 HOH 73 183 73 HOH HOH A . D 3 HOH 74 184 74 HOH HOH A . D 3 HOH 75 185 75 HOH HOH A . D 3 HOH 76 186 76 HOH HOH A . D 3 HOH 77 187 77 HOH HOH A . D 3 HOH 78 188 78 HOH HOH A . D 3 HOH 79 189 79 HOH HOH A . D 3 HOH 80 190 80 HOH HOH A . D 3 HOH 81 191 81 HOH HOH A . D 3 HOH 82 192 82 HOH HOH A . D 3 HOH 83 193 83 HOH HOH A . D 3 HOH 84 194 84 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 SHELXD phasing . ? 5 MLPHARE phasing . ? 6 DM phasing . ? 7 RESOLVE phasing . ? 8 HKL-3000 phasing . ? 9 # _cell.entry_id 3DF8 _cell.length_a 65.739 _cell.length_b 54.755 _cell.length_c 40.687 _cell.angle_alpha 90.00 _cell.angle_beta 125.31 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DF8 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3DF8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_percent_sol 48.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_details ;0.2M Cacium Acetate, 0.1M MES 20%(w/v) PEG8000, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-03-08 _diffrn_detector.details Mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97931 # _reflns.entry_id 3DF8 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.65 _reflns.d_resolution_low 38.3 _reflns.number_all 13735 _reflns.number_obs 13735 _reflns.percent_possible_obs 97.3 _reflns.pdbx_Rmerge_I_obs 0.099 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 27.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.69 _reflns_shell.percent_possible_all 77.3 _reflns_shell.Rmerge_I_obs 0.477 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 2.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 734 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3DF8 _refine.ls_number_reflns_obs 13052 _refine.ls_number_reflns_all 13052 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.3 _refine.ls_d_res_high 1.65 _refine.ls_percent_reflns_obs 97.14 _refine.ls_R_factor_obs 0.17285 _refine.ls_R_factor_all 0.17285 _refine.ls_R_factor_R_work 0.17074 _refine.ls_R_factor_R_free 0.21064 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 681 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.B_iso_mean 32.435 _refine.aniso_B[1][1] -0.17 _refine.aniso_B[2][2] 0.16 _refine.aniso_B[3][3] -0.24 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.22 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.096 _refine.pdbx_overall_ESU_R_Free 0.099 _refine.overall_SU_ML 0.068 _refine.overall_SU_B 4.097 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 848 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 940 _refine_hist.d_res_high 1.65 _refine_hist.d_res_low 38.3 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 930 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.558 1.999 ? 1272 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.501 5.000 ? 132 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.691 23.333 ? 39 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.834 15.000 ? 182 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.082 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.101 0.200 ? 153 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 695 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.219 0.200 ? 430 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.311 0.200 ? 652 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.139 0.200 ? 62 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.203 0.200 ? 73 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.121 0.200 ? 23 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.899 1.500 ? 609 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.364 2.000 ? 961 'X-RAY DIFFRACTION' ? r_scbond_it 2.284 3.000 ? 358 'X-RAY DIFFRACTION' ? r_scangle_it 3.580 4.500 ? 300 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.655 _refine_ls_shell.d_res_low 1.698 _refine_ls_shell.number_reflns_R_work 772 _refine_ls_shell.R_factor_R_work 0.274 _refine_ls_shell.percent_reflns_obs 76.58 _refine_ls_shell.R_factor_R_free 0.326 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 814 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3DF8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3DF8 _struct.title 'The crystal structure of a possible HxlR family transcriptional factor from Thermoplasma volcanium GSS1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DF8 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;APC89000, HxlR, transcriptional factor, structural genomics, PSI-2, midwest center for structural genomics, MCSG, Protein Structure Initiative, TRANSCRIPTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q978X0_THEVO _struct_ref.pdbx_db_accession Q978X0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLRYGDTEICIDPSESVLHLLGKKYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTY ALTEKGMNVRNSLMPLLQYISVLDRNGD ; _struct_ref.pdbx_align_begin 10 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DF8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 111 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q978X0 _struct_ref_seq.db_align_beg 10 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 117 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 108 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DF8 SER A 1 ? UNP Q978X0 ? ? 'expression tag' -2 1 1 3DF8 ASN A 2 ? UNP Q978X0 ? ? 'expression tag' -1 2 1 3DF8 ALA A 3 ? UNP Q978X0 ? ? 'expression tag' 0 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4010 ? 1 MORE -34 ? 1 'SSA (A^2)' 11000 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;authors state that the biological unit is experimentally unknown. The molecule is expected to form a dimer with its symmetry-related molecule (-x,1+y,-z). ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 20 ? LYS A 26 ? VAL A 17 LYS A 23 1 ? 7 HELX_P HELX_P2 2 TYR A 28 ? GLY A 37 ? TYR A 25 GLY A 34 1 ? 10 HELX_P HELX_P3 3 ASN A 44 ? SER A 51 ? ASN A 41 SER A 48 1 ? 8 HELX_P HELX_P4 4 SER A 56 ? SER A 70 ? SER A 53 SER A 67 1 ? 15 HELX_P HELX_P5 5 THR A 86 ? ASN A 109 ? THR A 83 ASN A 106 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A MSE 4 C ? ? ? 1_555 A LEU 5 N ? ? A MSE 1 A LEU 2 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A THR 29 C ? ? ? 1_555 A MSE 30 N ? ? A THR 26 A MSE 27 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? A MSE 30 C ? ? ? 1_555 A LEU 31 N ? ? A MSE 27 A LEU 28 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? A GLY 89 C ? ? ? 1_555 A MSE 90 N ? ? A GLY 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? A MSE 90 C ? ? ? 1_555 A ASN 91 N ? ? A MSE 87 A ASN 88 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale7 covale both ? A LEU 96 C ? ? ? 1_555 A MSE 97 N ? ? A LEU 93 A MSE 94 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale8 covale both ? A MSE 97 C ? ? ? 1_555 A PRO 98 N ? ? A MSE 94 A PRO 95 1_555 ? ? ? ? ? ? ? 1.350 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 4 ? . . . . MSE A 1 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 30 ? . . . . MSE A 27 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 90 ? . . . . MSE A 87 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE A 97 ? . . . . MSE A 94 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 3 ? TYR A 7 ? ALA A 0 TYR A 4 A 2 THR A 10 ? ILE A 14 ? THR A 7 ILE A 11 B 1 VAL A 73 ? SER A 77 ? VAL A 70 SER A 74 B 2 THR A 81 ? LEU A 85 ? THR A 78 LEU A 82 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 3 ? N ALA A 0 O ILE A 14 ? O ILE A 11 B 1 2 N ARG A 76 ? N ARG A 73 O THR A 82 ? O THR A 79 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACT 109 ? 8 'BINDING SITE FOR RESIDUE ACT A 109' AC2 Software A ACT 110 ? 5 'BINDING SITE FOR RESIDUE ACT A 110' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ARG A 6 ? ARG A 3 . ? 1_555 ? 2 AC1 8 TYR A 7 ? TYR A 4 . ? 1_555 ? 3 AC1 8 GLY A 8 ? GLY A 5 . ? 1_555 ? 4 AC1 8 ARG A 49 ? ARG A 46 . ? 3_556 ? 5 AC1 8 SER A 57 ? SER A 54 . ? 3_556 ? 6 AC1 8 ARG A 93 ? ARG A 90 . ? 2_555 ? 7 AC1 8 HOH D . ? HOH A 123 . ? 2_555 ? 8 AC1 8 HOH D . ? HOH A 135 . ? 2_555 ? 9 AC2 5 PRO A 16 ? PRO A 13 . ? 2_555 ? 10 AC2 5 HIS A 22 ? HIS A 19 . ? 2_555 ? 11 AC2 5 LYS A 27 ? LYS A 24 . ? 1_555 ? 12 AC2 5 TYR A 28 ? TYR A 25 . ? 1_555 ? 13 AC2 5 HOH D . ? HOH A 111 . ? 1_555 ? # _pdbx_entry_details.entry_id 3DF8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TYR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 25 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 83.00 _pdbx_validate_torsion.psi -15.88 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 30 A MSE 27 ? MET SELENOMETHIONINE 3 A MSE 90 A MSE 87 ? MET SELENOMETHIONINE 4 A MSE 97 A MSE 94 ? MET SELENOMETHIONINE # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 126 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -5.7100 31.2610 13.4870 -0.0725 0.0303 -0.0350 0.0280 0.0180 -0.0772 5.7414 13.8057 3.4148 4.0066 -0.6978 -0.2150 -0.1352 -0.5517 -0.0415 -0.1088 -0.2244 0.6863 0.1841 -0.7738 0.3596 'X-RAY DIFFRACTION' 2 ? refined -5.4890 21.7750 0.1490 -0.0971 -0.1479 -0.0746 -0.0022 -0.0182 0.0075 10.7530 14.6649 43.3278 -10.0755 -21.3842 17.9902 -0.0992 -0.4542 -0.1824 0.3021 0.2777 -0.0835 1.1139 0.4128 -0.1784 'X-RAY DIFFRACTION' 3 ? refined -3.4000 26.9290 -10.7630 -0.1880 -0.1812 -0.1200 0.0014 0.0392 -0.0183 6.3656 7.0633 11.9411 -0.7623 4.2726 -3.9258 -0.1236 0.2838 0.0059 0.0211 -0.0909 -0.1511 -0.0995 0.3050 0.2145 'X-RAY DIFFRACTION' 4 ? refined -10.5870 23.2120 -15.2180 -0.1374 -0.1706 -0.1198 0.0065 0.0340 -0.0199 4.3192 1.5111 2.9130 -0.3605 1.9496 0.7414 0.0567 0.3783 -0.0905 -0.0644 -0.0319 -0.0887 0.1705 0.1098 -0.0248 'X-RAY DIFFRACTION' 5 ? refined 2.1060 33.6910 -5.2010 -0.0918 -0.1705 -0.0852 -0.0214 0.0044 0.0445 11.9315 1.4824 2.4062 -0.0319 2.0035 -0.0643 -0.0689 0.3761 0.4447 -0.0389 -0.1701 -0.0754 -0.2254 0.3240 0.2390 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A -2 A 1 A 15 A 18 ? 'X-RAY DIFFRACTION' ? 2 2 A 16 A 19 A 24 A 27 ? 'X-RAY DIFFRACTION' ? 3 3 A 25 A 28 A 35 A 38 ? 'X-RAY DIFFRACTION' ? 4 4 A 36 A 39 A 83 A 86 ? 'X-RAY DIFFRACTION' ? 5 5 A 84 A 87 A 106 A 109 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 107 ? A GLY 110 2 1 Y 1 A ASP 108 ? A ASP 111 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 CYS N N N N 81 CYS CA C N R 82 CYS C C N N 83 CYS O O N N 84 CYS CB C N N 85 CYS SG S N N 86 CYS OXT O N N 87 CYS H H N N 88 CYS H2 H N N 89 CYS HA H N N 90 CYS HB2 H N N 91 CYS HB3 H N N 92 CYS HG H N N 93 CYS HXT H N N 94 GLN N N N N 95 GLN CA C N S 96 GLN C C N N 97 GLN O O N N 98 GLN CB C N N 99 GLN CG C N N 100 GLN CD C N N 101 GLN OE1 O N N 102 GLN NE2 N N N 103 GLN OXT O N N 104 GLN H H N N 105 GLN H2 H N N 106 GLN HA H N N 107 GLN HB2 H N N 108 GLN HB3 H N N 109 GLN HG2 H N N 110 GLN HG3 H N N 111 GLN HE21 H N N 112 GLN HE22 H N N 113 GLN HXT H N N 114 GLU N N N N 115 GLU CA C N S 116 GLU C C N N 117 GLU O O N N 118 GLU CB C N N 119 GLU CG C N N 120 GLU CD C N N 121 GLU OE1 O N N 122 GLU OE2 O N N 123 GLU OXT O N N 124 GLU H H N N 125 GLU H2 H N N 126 GLU HA H N N 127 GLU HB2 H N N 128 GLU HB3 H N N 129 GLU HG2 H N N 130 GLU HG3 H N N 131 GLU HE2 H N N 132 GLU HXT H N N 133 GLY N N N N 134 GLY CA C N N 135 GLY C C N N 136 GLY O O N N 137 GLY OXT O N N 138 GLY H H N N 139 GLY H2 H N N 140 GLY HA2 H N N 141 GLY HA3 H N N 142 GLY HXT H N N 143 HIS N N N N 144 HIS CA C N S 145 HIS C C N N 146 HIS O O N N 147 HIS CB C N N 148 HIS CG C Y N 149 HIS ND1 N Y N 150 HIS CD2 C Y N 151 HIS CE1 C Y N 152 HIS NE2 N Y N 153 HIS OXT O N N 154 HIS H H N N 155 HIS H2 H N N 156 HIS HA H N N 157 HIS HB2 H N N 158 HIS HB3 H N N 159 HIS HD1 H N N 160 HIS HD2 H N N 161 HIS HE1 H N N 162 HIS HE2 H N N 163 HIS HXT H N N 164 HOH O O N N 165 HOH H1 H N N 166 HOH H2 H N N 167 ILE N N N N 168 ILE CA C N S 169 ILE C C N N 170 ILE O O N N 171 ILE CB C N S 172 ILE CG1 C N N 173 ILE CG2 C N N 174 ILE CD1 C N N 175 ILE OXT O N N 176 ILE H H N N 177 ILE H2 H N N 178 ILE HA H N N 179 ILE HB H N N 180 ILE HG12 H N N 181 ILE HG13 H N N 182 ILE HG21 H N N 183 ILE HG22 H N N 184 ILE HG23 H N N 185 ILE HD11 H N N 186 ILE HD12 H N N 187 ILE HD13 H N N 188 ILE HXT H N N 189 LEU N N N N 190 LEU CA C N S 191 LEU C C N N 192 LEU O O N N 193 LEU CB C N N 194 LEU CG C N N 195 LEU CD1 C N N 196 LEU CD2 C N N 197 LEU OXT O N N 198 LEU H H N N 199 LEU H2 H N N 200 LEU HA H N N 201 LEU HB2 H N N 202 LEU HB3 H N N 203 LEU HG H N N 204 LEU HD11 H N N 205 LEU HD12 H N N 206 LEU HD13 H N N 207 LEU HD21 H N N 208 LEU HD22 H N N 209 LEU HD23 H N N 210 LEU HXT H N N 211 LYS N N N N 212 LYS CA C N S 213 LYS C C N N 214 LYS O O N N 215 LYS CB C N N 216 LYS CG C N N 217 LYS CD C N N 218 LYS CE C N N 219 LYS NZ N N N 220 LYS OXT O N N 221 LYS H H N N 222 LYS H2 H N N 223 LYS HA H N N 224 LYS HB2 H N N 225 LYS HB3 H N N 226 LYS HG2 H N N 227 LYS HG3 H N N 228 LYS HD2 H N N 229 LYS HD3 H N N 230 LYS HE2 H N N 231 LYS HE3 H N N 232 LYS HZ1 H N N 233 LYS HZ2 H N N 234 LYS HZ3 H N N 235 LYS HXT H N N 236 MSE N N N N 237 MSE CA C N S 238 MSE C C N N 239 MSE O O N N 240 MSE OXT O N N 241 MSE CB C N N 242 MSE CG C N N 243 MSE SE SE N N 244 MSE CE C N N 245 MSE H H N N 246 MSE H2 H N N 247 MSE HA H N N 248 MSE HXT H N N 249 MSE HB2 H N N 250 MSE HB3 H N N 251 MSE HG2 H N N 252 MSE HG3 H N N 253 MSE HE1 H N N 254 MSE HE2 H N N 255 MSE HE3 H N N 256 PHE N N N N 257 PHE CA C N S 258 PHE C C N N 259 PHE O O N N 260 PHE CB C N N 261 PHE CG C Y N 262 PHE CD1 C Y N 263 PHE CD2 C Y N 264 PHE CE1 C Y N 265 PHE CE2 C Y N 266 PHE CZ C Y N 267 PHE OXT O N N 268 PHE H H N N 269 PHE H2 H N N 270 PHE HA H N N 271 PHE HB2 H N N 272 PHE HB3 H N N 273 PHE HD1 H N N 274 PHE HD2 H N N 275 PHE HE1 H N N 276 PHE HE2 H N N 277 PHE HZ H N N 278 PHE HXT H N N 279 PRO N N N N 280 PRO CA C N S 281 PRO C C N N 282 PRO O O N N 283 PRO CB C N N 284 PRO CG C N N 285 PRO CD C N N 286 PRO OXT O N N 287 PRO H H N N 288 PRO HA H N N 289 PRO HB2 H N N 290 PRO HB3 H N N 291 PRO HG2 H N N 292 PRO HG3 H N N 293 PRO HD2 H N N 294 PRO HD3 H N N 295 PRO HXT H N N 296 SER N N N N 297 SER CA C N S 298 SER C C N N 299 SER O O N N 300 SER CB C N N 301 SER OG O N N 302 SER OXT O N N 303 SER H H N N 304 SER H2 H N N 305 SER HA H N N 306 SER HB2 H N N 307 SER HB3 H N N 308 SER HG H N N 309 SER HXT H N N 310 THR N N N N 311 THR CA C N S 312 THR C C N N 313 THR O O N N 314 THR CB C N R 315 THR OG1 O N N 316 THR CG2 C N N 317 THR OXT O N N 318 THR H H N N 319 THR H2 H N N 320 THR HA H N N 321 THR HB H N N 322 THR HG1 H N N 323 THR HG21 H N N 324 THR HG22 H N N 325 THR HG23 H N N 326 THR HXT H N N 327 TYR N N N N 328 TYR CA C N S 329 TYR C C N N 330 TYR O O N N 331 TYR CB C N N 332 TYR CG C Y N 333 TYR CD1 C Y N 334 TYR CD2 C Y N 335 TYR CE1 C Y N 336 TYR CE2 C Y N 337 TYR CZ C Y N 338 TYR OH O N N 339 TYR OXT O N N 340 TYR H H N N 341 TYR H2 H N N 342 TYR HA H N N 343 TYR HB2 H N N 344 TYR HB3 H N N 345 TYR HD1 H N N 346 TYR HD2 H N N 347 TYR HE1 H N N 348 TYR HE2 H N N 349 TYR HH H N N 350 TYR HXT H N N 351 VAL N N N N 352 VAL CA C N S 353 VAL C C N N 354 VAL O O N N 355 VAL CB C N N 356 VAL CG1 C N N 357 VAL CG2 C N N 358 VAL OXT O N N 359 VAL H H N N 360 VAL H2 H N N 361 VAL HA H N N 362 VAL HB H N N 363 VAL HG11 H N N 364 VAL HG12 H N N 365 VAL HG13 H N N 366 VAL HG21 H N N 367 VAL HG22 H N N 368 VAL HG23 H N N 369 VAL HXT H N N 370 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 CYS N CA sing N N 76 CYS N H sing N N 77 CYS N H2 sing N N 78 CYS CA C sing N N 79 CYS CA CB sing N N 80 CYS CA HA sing N N 81 CYS C O doub N N 82 CYS C OXT sing N N 83 CYS CB SG sing N N 84 CYS CB HB2 sing N N 85 CYS CB HB3 sing N N 86 CYS SG HG sing N N 87 CYS OXT HXT sing N N 88 GLN N CA sing N N 89 GLN N H sing N N 90 GLN N H2 sing N N 91 GLN CA C sing N N 92 GLN CA CB sing N N 93 GLN CA HA sing N N 94 GLN C O doub N N 95 GLN C OXT sing N N 96 GLN CB CG sing N N 97 GLN CB HB2 sing N N 98 GLN CB HB3 sing N N 99 GLN CG CD sing N N 100 GLN CG HG2 sing N N 101 GLN CG HG3 sing N N 102 GLN CD OE1 doub N N 103 GLN CD NE2 sing N N 104 GLN NE2 HE21 sing N N 105 GLN NE2 HE22 sing N N 106 GLN OXT HXT sing N N 107 GLU N CA sing N N 108 GLU N H sing N N 109 GLU N H2 sing N N 110 GLU CA C sing N N 111 GLU CA CB sing N N 112 GLU CA HA sing N N 113 GLU C O doub N N 114 GLU C OXT sing N N 115 GLU CB CG sing N N 116 GLU CB HB2 sing N N 117 GLU CB HB3 sing N N 118 GLU CG CD sing N N 119 GLU CG HG2 sing N N 120 GLU CG HG3 sing N N 121 GLU CD OE1 doub N N 122 GLU CD OE2 sing N N 123 GLU OE2 HE2 sing N N 124 GLU OXT HXT sing N N 125 GLY N CA sing N N 126 GLY N H sing N N 127 GLY N H2 sing N N 128 GLY CA C sing N N 129 GLY CA HA2 sing N N 130 GLY CA HA3 sing N N 131 GLY C O doub N N 132 GLY C OXT sing N N 133 GLY OXT HXT sing N N 134 HIS N CA sing N N 135 HIS N H sing N N 136 HIS N H2 sing N N 137 HIS CA C sing N N 138 HIS CA CB sing N N 139 HIS CA HA sing N N 140 HIS C O doub N N 141 HIS C OXT sing N N 142 HIS CB CG sing N N 143 HIS CB HB2 sing N N 144 HIS CB HB3 sing N N 145 HIS CG ND1 sing Y N 146 HIS CG CD2 doub Y N 147 HIS ND1 CE1 doub Y N 148 HIS ND1 HD1 sing N N 149 HIS CD2 NE2 sing Y N 150 HIS CD2 HD2 sing N N 151 HIS CE1 NE2 sing Y N 152 HIS CE1 HE1 sing N N 153 HIS NE2 HE2 sing N N 154 HIS OXT HXT sing N N 155 HOH O H1 sing N N 156 HOH O H2 sing N N 157 ILE N CA sing N N 158 ILE N H sing N N 159 ILE N H2 sing N N 160 ILE CA C sing N N 161 ILE CA CB sing N N 162 ILE CA HA sing N N 163 ILE C O doub N N 164 ILE C OXT sing N N 165 ILE CB CG1 sing N N 166 ILE CB CG2 sing N N 167 ILE CB HB sing N N 168 ILE CG1 CD1 sing N N 169 ILE CG1 HG12 sing N N 170 ILE CG1 HG13 sing N N 171 ILE CG2 HG21 sing N N 172 ILE CG2 HG22 sing N N 173 ILE CG2 HG23 sing N N 174 ILE CD1 HD11 sing N N 175 ILE CD1 HD12 sing N N 176 ILE CD1 HD13 sing N N 177 ILE OXT HXT sing N N 178 LEU N CA sing N N 179 LEU N H sing N N 180 LEU N H2 sing N N 181 LEU CA C sing N N 182 LEU CA CB sing N N 183 LEU CA HA sing N N 184 LEU C O doub N N 185 LEU C OXT sing N N 186 LEU CB CG sing N N 187 LEU CB HB2 sing N N 188 LEU CB HB3 sing N N 189 LEU CG CD1 sing N N 190 LEU CG CD2 sing N N 191 LEU CG HG sing N N 192 LEU CD1 HD11 sing N N 193 LEU CD1 HD12 sing N N 194 LEU CD1 HD13 sing N N 195 LEU CD2 HD21 sing N N 196 LEU CD2 HD22 sing N N 197 LEU CD2 HD23 sing N N 198 LEU OXT HXT sing N N 199 LYS N CA sing N N 200 LYS N H sing N N 201 LYS N H2 sing N N 202 LYS CA C sing N N 203 LYS CA CB sing N N 204 LYS CA HA sing N N 205 LYS C O doub N N 206 LYS C OXT sing N N 207 LYS CB CG sing N N 208 LYS CB HB2 sing N N 209 LYS CB HB3 sing N N 210 LYS CG CD sing N N 211 LYS CG HG2 sing N N 212 LYS CG HG3 sing N N 213 LYS CD CE sing N N 214 LYS CD HD2 sing N N 215 LYS CD HD3 sing N N 216 LYS CE NZ sing N N 217 LYS CE HE2 sing N N 218 LYS CE HE3 sing N N 219 LYS NZ HZ1 sing N N 220 LYS NZ HZ2 sing N N 221 LYS NZ HZ3 sing N N 222 LYS OXT HXT sing N N 223 MSE N CA sing N N 224 MSE N H sing N N 225 MSE N H2 sing N N 226 MSE CA C sing N N 227 MSE CA CB sing N N 228 MSE CA HA sing N N 229 MSE C O doub N N 230 MSE C OXT sing N N 231 MSE OXT HXT sing N N 232 MSE CB CG sing N N 233 MSE CB HB2 sing N N 234 MSE CB HB3 sing N N 235 MSE CG SE sing N N 236 MSE CG HG2 sing N N 237 MSE CG HG3 sing N N 238 MSE SE CE sing N N 239 MSE CE HE1 sing N N 240 MSE CE HE2 sing N N 241 MSE CE HE3 sing N N 242 PHE N CA sing N N 243 PHE N H sing N N 244 PHE N H2 sing N N 245 PHE CA C sing N N 246 PHE CA CB sing N N 247 PHE CA HA sing N N 248 PHE C O doub N N 249 PHE C OXT sing N N 250 PHE CB CG sing N N 251 PHE CB HB2 sing N N 252 PHE CB HB3 sing N N 253 PHE CG CD1 doub Y N 254 PHE CG CD2 sing Y N 255 PHE CD1 CE1 sing Y N 256 PHE CD1 HD1 sing N N 257 PHE CD2 CE2 doub Y N 258 PHE CD2 HD2 sing N N 259 PHE CE1 CZ doub Y N 260 PHE CE1 HE1 sing N N 261 PHE CE2 CZ sing Y N 262 PHE CE2 HE2 sing N N 263 PHE CZ HZ sing N N 264 PHE OXT HXT sing N N 265 PRO N CA sing N N 266 PRO N CD sing N N 267 PRO N H sing N N 268 PRO CA C sing N N 269 PRO CA CB sing N N 270 PRO CA HA sing N N 271 PRO C O doub N N 272 PRO C OXT sing N N 273 PRO CB CG sing N N 274 PRO CB HB2 sing N N 275 PRO CB HB3 sing N N 276 PRO CG CD sing N N 277 PRO CG HG2 sing N N 278 PRO CG HG3 sing N N 279 PRO CD HD2 sing N N 280 PRO CD HD3 sing N N 281 PRO OXT HXT sing N N 282 SER N CA sing N N 283 SER N H sing N N 284 SER N H2 sing N N 285 SER CA C sing N N 286 SER CA CB sing N N 287 SER CA HA sing N N 288 SER C O doub N N 289 SER C OXT sing N N 290 SER CB OG sing N N 291 SER CB HB2 sing N N 292 SER CB HB3 sing N N 293 SER OG HG sing N N 294 SER OXT HXT sing N N 295 THR N CA sing N N 296 THR N H sing N N 297 THR N H2 sing N N 298 THR CA C sing N N 299 THR CA CB sing N N 300 THR CA HA sing N N 301 THR C O doub N N 302 THR C OXT sing N N 303 THR CB OG1 sing N N 304 THR CB CG2 sing N N 305 THR CB HB sing N N 306 THR OG1 HG1 sing N N 307 THR CG2 HG21 sing N N 308 THR CG2 HG22 sing N N 309 THR CG2 HG23 sing N N 310 THR OXT HXT sing N N 311 TYR N CA sing N N 312 TYR N H sing N N 313 TYR N H2 sing N N 314 TYR CA C sing N N 315 TYR CA CB sing N N 316 TYR CA HA sing N N 317 TYR C O doub N N 318 TYR C OXT sing N N 319 TYR CB CG sing N N 320 TYR CB HB2 sing N N 321 TYR CB HB3 sing N N 322 TYR CG CD1 doub Y N 323 TYR CG CD2 sing Y N 324 TYR CD1 CE1 sing Y N 325 TYR CD1 HD1 sing N N 326 TYR CD2 CE2 doub Y N 327 TYR CD2 HD2 sing N N 328 TYR CE1 CZ doub Y N 329 TYR CE1 HE1 sing N N 330 TYR CE2 CZ sing Y N 331 TYR CE2 HE2 sing N N 332 TYR CZ OH sing N N 333 TYR OH HH sing N N 334 TYR OXT HXT sing N N 335 VAL N CA sing N N 336 VAL N H sing N N 337 VAL N H2 sing N N 338 VAL CA C sing N N 339 VAL CA CB sing N N 340 VAL CA HA sing N N 341 VAL C O doub N N 342 VAL C OXT sing N N 343 VAL CB CG1 sing N N 344 VAL CB CG2 sing N N 345 VAL CB HB sing N N 346 VAL CG1 HG11 sing N N 347 VAL CG1 HG12 sing N N 348 VAL CG1 HG13 sing N N 349 VAL CG2 HG21 sing N N 350 VAL CG2 HG22 sing N N 351 VAL CG2 HG23 sing N N 352 VAL OXT HXT sing N N 353 # _atom_sites.entry_id 3DF8 _atom_sites.fract_transf_matrix[1][1] 0.015212 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010774 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018263 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030118 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_