HEADER METAL BINDING PROTEIN 17-JUN-08 3DH8 TITLE STRUCTURE OF PSEUDOMONAS QUINOLONE SIGNAL RESPONSE PROTEIN PQSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN PA1000; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PSEUDOMONAS QUINOLONE SIGNAL RESPONSE PROTEIN, PQSE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: PA1000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS QUORUM SENSING, PSEUDOMONAS QUINOLONE SIGNAL, PQS, METAL-BETA- KEYWDS 2 LACTAMASE, IRON, PHOSPHODIESTERASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.YU,W.BLANKENFELDT REVDAT 5 01-NOV-23 3DH8 1 REMARK REVDAT 4 10-NOV-21 3DH8 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3DH8 1 VERSN REVDAT 2 10-NOV-09 3DH8 1 JRNL REVDAT 1 23-JUN-09 3DH8 0 JRNL AUTH S.YU,V.JENSEN,J.SEELIGER,I.FELDMANN,S.WEBER,E.SCHLEICHER, JRNL AUTH 2 S.HAUSSLER,W.BLANKENFELDT JRNL TITL STRUCTURE ELUCIDATION AND PRELIMINARY ASSESSMENT OF JRNL TITL 2 HYDROLASE ACTIVITY OF PQSE, THE PSEUDOMONAS QUINOLONE SIGNAL JRNL TITL 3 (PQS) RESPONSE PROTEIN. JRNL REF BIOCHEMISTRY V. 48 10298 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19788310 JRNL DOI 10.1021/BI900123J REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2071 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.1600 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2378 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.654 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2497 ; 0.027 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1716 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3403 ; 2.207 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4120 ; 1.139 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 6.306 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;34.109 ;22.480 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 411 ;14.552 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.973 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2821 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 540 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 513 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1878 ; 0.223 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1201 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1394 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 183 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.012 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.273 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.389 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.363 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1642 ; 1.931 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 612 ; 0.498 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2401 ; 2.275 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1099 ; 3.846 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 996 ; 5.390 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): -20.0979 -6.2855 -13.4450 REMARK 3 T TENSOR REMARK 3 T11: -0.0156 T22: -0.1287 REMARK 3 T33: -0.0892 T12: 0.0349 REMARK 3 T13: -0.0322 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.1171 L22: 1.1710 REMARK 3 L33: 1.4574 L12: -0.0532 REMARK 3 L13: -0.1650 L23: 0.1336 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: -0.1571 S13: 0.0141 REMARK 3 S21: 0.2273 S22: 0.0476 S23: -0.0041 REMARK 3 S31: -0.0628 S32: -0.0090 S33: 0.0071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, TLS REFINEMENT WAS USED THROUGHOUT (1 TLS BODY REMARK 3 INCLUDING ALL ATOMS), RESTRAINTS FOR BIS-PNPP WERE GENERATED REMARK 3 WITH PRODRG REMARK 4 REMARK 4 3DH8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000048035. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97881 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30110 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.37700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT OF REMARK 200 NATIVE STRUCTURE 2Q0I IN REFMAC5 REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2Q0I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 200MM MGCL2, 30% PEG 400, REMARK 280 5MM BIS-PNPP, PH 7.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.88000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.94000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.94000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.88000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 298 REMARK 465 PRO A 299 REMARK 465 LEU A 300 REMARK 465 ASP A 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 199 O HOH A 1130 2.06 REMARK 500 OE1 GLN A 152 O HOH A 1160 2.10 REMARK 500 OAD B4N A 1000 O HOH A 1218 2.12 REMARK 500 OD1 ASP A 12 O HOH A 1101 2.14 REMARK 500 O HOH A 1125 O HOH A 1174 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 206 CG GLU A 206 CD 0.102 REMARK 500 TRP A 250 CE2 TRP A 250 CZ2 -0.102 REMARK 500 ARG A 251 CG ARG A 251 CD -0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 19 CB - CG - OD1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP A 19 CB - CG - OD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 ASP A 168 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 197 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 197 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 246 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 246 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 247 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 5 35.31 -143.86 REMARK 500 GLU A 38 145.04 82.84 REMARK 500 CYS A 75 10.72 -147.39 REMARK 500 ASP A 196 -50.00 -128.07 REMARK 500 GLN A 296 40.25 -100.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 120 GLN A 121 -145.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 998 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 NE2 REMARK 620 2 HIS A 71 ND1 89.0 REMARK 620 3 HIS A 159 NE2 97.3 94.0 REMARK 620 4 ASP A 178 OD2 93.0 173.5 91.9 REMARK 620 5 B4N A1000 OAC 172.1 98.3 79.5 80.0 REMARK 620 6 HOH A1001 O 102.1 98.6 157.0 75.0 79.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 999 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 73 OD2 REMARK 620 2 HIS A 74 NE2 89.0 REMARK 620 3 ASP A 178 OD2 163.3 89.1 REMARK 620 4 HIS A 221 NE2 85.6 93.4 111.1 REMARK 620 5 B4N A1000 OAF 91.3 178.1 90.1 88.6 REMARK 620 6 HOH A1001 O 87.3 89.3 76.0 172.4 88.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B4N A 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q0I RELATED DB: PDB REMARK 900 RELATED ID: 2Q0J RELATED DB: PDB DBREF 3DH8 A 1 301 UNP P20581 Y1000_PSEAE 1 301 SEQADV 3DH8 SER A 900 UNP P20581 EXPRESSION TAG SEQADV 3DH8 HIS A 901 UNP P20581 EXPRESSION TAG SEQADV 3DH8 ALA A 182 UNP P20581 GLU 182 ENGINEERED MUTATION SEQRES 1 A 303 SER HIS MET LEU ARG LEU SER ALA PRO GLY GLN LEU ASP SEQRES 2 A 303 ASP ASP LEU CYS LEU LEU GLY ASP VAL GLN VAL PRO VAL SEQRES 3 A 303 PHE LEU LEU ARG LEU GLY GLU ALA SER TRP ALA LEU VAL SEQRES 4 A 303 GLU GLY GLY ILE SER ARG ASP ALA GLU LEU VAL TRP ALA SEQRES 5 A 303 ASP LEU CYS ARG TRP VAL ALA ASP PRO SER GLN VAL HIS SEQRES 6 A 303 TYR TRP LEU ILE THR HIS LYS HIS TYR ASP HIS CYS GLY SEQRES 7 A 303 LEU LEU PRO TYR LEU CYS PRO ARG LEU PRO ASN VAL GLN SEQRES 8 A 303 VAL LEU ALA SER GLU ARG THR CYS GLN ALA TRP LYS SER SEQRES 9 A 303 GLU SER ALA VAL ARG VAL VAL GLU ARG LEU ASN ARG GLN SEQRES 10 A 303 LEU LEU ARG ALA GLU GLN ARG LEU PRO GLU ALA CYS ALA SEQRES 11 A 303 TRP ASP ALA LEU PRO VAL ARG ALA VAL ALA ASP GLY GLU SEQRES 12 A 303 TRP LEU GLU LEU GLY PRO ARG HIS ARG LEU GLN VAL ILE SEQRES 13 A 303 GLU ALA HIS GLY HIS SER ASP ASP HIS VAL VAL PHE TYR SEQRES 14 A 303 ASP VAL ARG ARG ARG ARG LEU PHE CYS GLY ASP ALA LEU SEQRES 15 A 303 GLY ALA PHE ASP GLU ALA GLU GLY VAL TRP ARG PRO LEU SEQRES 16 A 303 VAL PHE ASP ASP MET GLU ALA TYR LEU GLU SER LEU GLU SEQRES 17 A 303 ARG LEU GLN ARG LEU PRO THR LEU LEU GLN LEU ILE PRO SEQRES 18 A 303 GLY HIS GLY GLY LEU LEU ARG GLY ARG LEU ALA ALA ASP SEQRES 19 A 303 GLY ALA GLU SER ALA TYR THR GLU CYS LEU ARG LEU CYS SEQRES 20 A 303 ARG ARG LEU LEU TRP ARG GLN SER MET GLY GLU SER LEU SEQRES 21 A 303 ASP GLU LEU SER GLU GLU LEU HIS ARG ALA TRP GLY GLY SEQRES 22 A 303 GLN SER VAL ASP PHE LEU PRO GLY GLU LEU HIS LEU GLY SEQRES 23 A 303 SER MET ARG ARG MET LEU GLU ILE LEU SER ARG GLN ALA SEQRES 24 A 303 LEU PRO LEU ASP HET FE A 998 1 HET FE A 999 1 HET B4N A1000 23 HETNAM FE FE (III) ION HETNAM B4N BIS(4-NITROPHENYL) HYDROGEN PHOSPHATE FORMUL 2 FE 2(FE 3+) FORMUL 4 B4N C12 H9 N2 O8 P FORMUL 5 HOH *224(H2 O) HELIX 1 1 ILE A 41 ARG A 43 5 3 HELIX 2 2 ASP A 44 VAL A 56 1 13 HELIX 3 3 ASP A 58 SER A 60 5 3 HELIX 4 4 LEU A 77 CYS A 82 1 6 HELIX 5 5 PRO A 83 LEU A 85 5 3 HELIX 6 6 GLU A 94 LYS A 101 1 8 HELIX 7 7 SER A 102 GLN A 115 1 14 HELIX 8 8 ALA A 128 LEU A 132 5 5 HELIX 9 9 VAL A 169 ARG A 171 5 3 HELIX 10 10 ASP A 197 ARG A 210 1 14 HELIX 11 11 GLY A 227 ASP A 232 1 6 HELIX 12 12 ASP A 232 MET A 254 1 23 HELIX 13 13 SER A 257 GLY A 270 1 14 HELIX 14 14 PRO A 278 GLN A 296 1 19 SHEET 1 A 7 ARG A 3 LEU A 4 0 SHEET 2 A 7 LEU A 224 ARG A 226 -1 O LEU A 224 N LEU A 4 SHEET 3 A 7 GLN A 216 PRO A 219 -1 N LEU A 217 O LEU A 225 SHEET 4 A 7 ARG A 173 GLY A 177 1 N LEU A 174 O ILE A 218 SHEET 5 A 7 VAL A 164 ASP A 168 -1 N ASP A 168 O ARG A 173 SHEET 6 A 7 HIS A 149 GLU A 155 -1 N GLN A 152 O TYR A 167 SHEET 7 A 7 TRP A 142 GLY A 146 -1 N LEU A 143 O LEU A 151 SHEET 1 B 7 GLY A 8 ASP A 11 0 SHEET 2 B 7 LEU A 14 LEU A 17 -1 O LEU A 14 N LEU A 10 SHEET 3 B 7 VAL A 24 GLY A 30 -1 O VAL A 24 N LEU A 17 SHEET 4 B 7 SER A 33 VAL A 37 -1 O VAL A 37 N PHE A 25 SHEET 5 B 7 VAL A 62 LEU A 66 1 O HIS A 63 N TRP A 34 SHEET 6 B 7 GLN A 89 SER A 93 1 O LEU A 91 N TRP A 65 SHEET 7 B 7 VAL A 134 VAL A 137 1 O ARG A 135 N VAL A 90 SHEET 1 C 2 ALA A 182 ASP A 184 0 SHEET 2 C 2 VAL A 189 ARG A 191 -1 O VAL A 189 N ASP A 184 LINK NE2 HIS A 69 FE FE A 998 1555 1555 2.20 LINK ND1 HIS A 71 FE FE A 998 1555 1555 2.24 LINK OD2 ASP A 73 FE FE A 999 1555 1555 2.15 LINK NE2 HIS A 74 FE FE A 999 1555 1555 2.07 LINK NE2 HIS A 159 FE FE A 998 1555 1555 2.15 LINK OD2 ASP A 178 FE FE A 998 1555 1555 2.35 LINK OD2 ASP A 178 FE FE A 999 1555 1555 2.24 LINK NE2 HIS A 221 FE FE A 999 1555 1555 2.16 LINK FE FE A 998 OAC B4N A1000 1555 1555 2.47 LINK FE FE A 998 O HOH A1001 1555 1555 1.95 LINK FE FE A 999 OAF B4N A1000 1555 1555 2.03 LINK FE FE A 999 O HOH A1001 1555 1555 2.03 SITE 1 AC1 5 HIS A 69 HIS A 71 HIS A 159 ASP A 178 SITE 2 AC1 5 HOH A1001 SITE 1 AC2 5 ASP A 73 HIS A 74 ASP A 178 HIS A 221 SITE 2 AC2 5 HOH A1001 SITE 1 AC3 17 HIS A 71 TYR A 72 ASP A 73 HIS A 159 SITE 2 AC3 17 ASP A 178 ALA A 182 ARG A 191 LEU A 193 SITE 3 AC3 17 PHE A 195 HIS A 221 GLN A 272 LEU A 281 SITE 4 AC3 17 HIS A 282 SER A 285 ARG A 288 HOH A1001 SITE 5 AC3 17 HOH A1218 CRYST1 60.980 60.980 146.820 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016399 0.009468 0.000000 0.00000 SCALE2 0.000000 0.018936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006811 0.00000