data_3DI5 # _entry.id 3DI5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DI5 pdb_00003di5 10.2210/pdb3di5/pdb RCSB RCSB048066 ? ? WWPDB D_1000048066 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 374604 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3DI5 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a DinB-like Protein (NP_980948.1) from BACILLUS CEREUS ATCC 10987 at 2.01 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3DI5 _cell.length_a 78.120 _cell.length_b 84.190 _cell.length_c 50.320 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DI5 _symmetry.Int_Tables_number 20 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DinB-like Protein' 19157.441 1 ? ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 water nat water 18.015 55 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)YQTIEGFLQSWTYETESTQK(MSE)LDVLTDESLSQEIAPGHWTLGRVAWHIVTAIPVILSGTGLKFEGETKDY PVPTSAKTIADGYRKVNTAFVEALQSEWTDKDLTTINDFFGRP(MSE)PNSIFL(MSE)TLINHQNHHRGQ(MSE)TVL (MSE)RQAGLTVPGVYGPAKEEWATAG(MSE)EAPK(MSE) ; _entity_poly.pdbx_seq_one_letter_code_can ;GMYQTIEGFLQSWTYETESTQKMLDVLTDESLSQEIAPGHWTLGRVAWHIVTAIPVILSGTGLKFEGETKDYPVPTSAKT IADGYRKVNTAFVEALQSEWTDKDLTTINDFFGRPMPNSIFLMTLINHQNHHRGQMTVLMRQAGLTVPGVYGPAKEEWAT AGMEAPKM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 374604 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 TYR n 1 4 GLN n 1 5 THR n 1 6 ILE n 1 7 GLU n 1 8 GLY n 1 9 PHE n 1 10 LEU n 1 11 GLN n 1 12 SER n 1 13 TRP n 1 14 THR n 1 15 TYR n 1 16 GLU n 1 17 THR n 1 18 GLU n 1 19 SER n 1 20 THR n 1 21 GLN n 1 22 LYS n 1 23 MSE n 1 24 LEU n 1 25 ASP n 1 26 VAL n 1 27 LEU n 1 28 THR n 1 29 ASP n 1 30 GLU n 1 31 SER n 1 32 LEU n 1 33 SER n 1 34 GLN n 1 35 GLU n 1 36 ILE n 1 37 ALA n 1 38 PRO n 1 39 GLY n 1 40 HIS n 1 41 TRP n 1 42 THR n 1 43 LEU n 1 44 GLY n 1 45 ARG n 1 46 VAL n 1 47 ALA n 1 48 TRP n 1 49 HIS n 1 50 ILE n 1 51 VAL n 1 52 THR n 1 53 ALA n 1 54 ILE n 1 55 PRO n 1 56 VAL n 1 57 ILE n 1 58 LEU n 1 59 SER n 1 60 GLY n 1 61 THR n 1 62 GLY n 1 63 LEU n 1 64 LYS n 1 65 PHE n 1 66 GLU n 1 67 GLY n 1 68 GLU n 1 69 THR n 1 70 LYS n 1 71 ASP n 1 72 TYR n 1 73 PRO n 1 74 VAL n 1 75 PRO n 1 76 THR n 1 77 SER n 1 78 ALA n 1 79 LYS n 1 80 THR n 1 81 ILE n 1 82 ALA n 1 83 ASP n 1 84 GLY n 1 85 TYR n 1 86 ARG n 1 87 LYS n 1 88 VAL n 1 89 ASN n 1 90 THR n 1 91 ALA n 1 92 PHE n 1 93 VAL n 1 94 GLU n 1 95 ALA n 1 96 LEU n 1 97 GLN n 1 98 SER n 1 99 GLU n 1 100 TRP n 1 101 THR n 1 102 ASP n 1 103 LYS n 1 104 ASP n 1 105 LEU n 1 106 THR n 1 107 THR n 1 108 ILE n 1 109 ASN n 1 110 ASP n 1 111 PHE n 1 112 PHE n 1 113 GLY n 1 114 ARG n 1 115 PRO n 1 116 MSE n 1 117 PRO n 1 118 ASN n 1 119 SER n 1 120 ILE n 1 121 PHE n 1 122 LEU n 1 123 MSE n 1 124 THR n 1 125 LEU n 1 126 ILE n 1 127 ASN n 1 128 HIS n 1 129 GLN n 1 130 ASN n 1 131 HIS n 1 132 HIS n 1 133 ARG n 1 134 GLY n 1 135 GLN n 1 136 MSE n 1 137 THR n 1 138 VAL n 1 139 LEU n 1 140 MSE n 1 141 ARG n 1 142 GLN n 1 143 ALA n 1 144 GLY n 1 145 LEU n 1 146 THR n 1 147 VAL n 1 148 PRO n 1 149 GLY n 1 150 VAL n 1 151 TYR n 1 152 GLY n 1 153 PRO n 1 154 ALA n 1 155 LYS n 1 156 GLU n 1 157 GLU n 1 158 TRP n 1 159 ALA n 1 160 THR n 1 161 ALA n 1 162 GLY n 1 163 MSE n 1 164 GLU n 1 165 ALA n 1 166 PRO n 1 167 LYS n 1 168 MSE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NP_980948.1, BCE_4655' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus ATCC 10987' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 222523 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 10987 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q72ZL3_BACC1 _struct_ref.pdbx_db_accession Q72ZL3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MYQTIEGFLQSWTYETESTQKMLDVLTDESLSQEIAPGHWTLGRVAWHIVTAIPVILSGTGLKFEGETKDYPVPTSAKTI ADGYRKVNTAFVEALQSEWTDKDLTTINDFFGRPMPNSIFLMTLINHQNHHRGQMTVLMRQAGLTVPGVYGPAKEEWATA GMEAPKM ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DI5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 168 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q72ZL3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 167 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 167 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3DI5 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q72ZL3 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3DI5 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.57 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;0.2M magnesium chloride, 30.5% polyethylene glycol 4000, 0.1M TRIS pH 8.57, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-04-10 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97916 1.0 3 0.97860 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97916,0.97860 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3DI5 _reflns.d_resolution_high 2.009 _reflns.d_resolution_low 28.630 _reflns.number_obs 11180 _reflns.pdbx_Rmerge_I_obs 0.034 _reflns.pdbx_netI_over_sigmaI 13.570 _reflns.percent_possible_obs 95.600 _reflns.B_iso_Wilson_estimate 35.693 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 3.93 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.00 2.07 3354 ? 1627 0.413 2.63 ? ? ? ? ? 77.60 1 1 2.07 2.15 4326 ? 2043 0.265 3.9 ? ? ? ? ? 97.30 2 1 2.15 2.25 4593 ? 2166 0.197 4.8 ? ? ? ? ? 98.30 3 1 2.25 2.37 4564 ? 2147 0.135 6.7 ? ? ? ? ? 96.70 4 1 2.37 2.52 4557 ? 2134 0.100 8.8 ? ? ? ? ? 98.00 5 1 2.52 2.71 4459 ? 2091 0.074 11.0 ? ? ? ? ? 98.50 6 1 2.71 2.99 4672 ? 2174 0.048 14.9 ? ? ? ? ? 98.00 7 1 2.99 3.42 4539 ? 2118 0.031 20.6 ? ? ? ? ? 98.80 8 1 3.42 4.30 4465 ? 2089 0.022 28.0 ? ? ? ? ? 97.00 9 1 4.30 28.63 4455 ? 2093 0.021 32.1 ? ? ? ? ? 95.70 10 1 # _refine.entry_id 3DI5 _refine.ls_d_res_high 2.009 _refine.ls_d_res_low 28.630 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.980 _refine.ls_number_reflns_obs 11168 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3.X-RAY FLUORESCENCE EXCITATION AND WAVELENGTH SCANS, ANOMALOUS DIFFERENCE FOURIERS AND COORDINATION GEOMETRY SUPPORT THE MODELING OF NI ION IN THE PUTATIVE ACTIVE SITE 4.THE DATA IS ANISOTROPIC ALONG THE B-DIRECTION. ; _refine.ls_R_factor_obs 0.231 _refine.ls_R_factor_R_work 0.229 _refine.ls_R_factor_R_free 0.266 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 534 _refine.B_iso_mean 33.148 _refine.aniso_B[1][1] -4.400 _refine.aniso_B[2][2] 5.290 _refine.aniso_B[3][3] -0.880 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.pdbx_overall_ESU_R 0.215 _refine.pdbx_overall_ESU_R_Free 0.185 _refine.overall_SU_ML 0.173 _refine.overall_SU_B 12.715 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1146 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 1202 _refine_hist.d_res_high 2.009 _refine_hist.d_res_low 28.630 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1189 0.014 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 753 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1627 1.273 1.936 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1850 0.924 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 151 5.035 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 46 36.434 24.348 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 184 13.892 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 3 23.366 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 189 0.076 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1324 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 235 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 280 0.221 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 718 0.170 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 608 0.181 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 554 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 42 0.150 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 7 0.147 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 17 0.121 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 6 0.076 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 778 0.764 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 305 0.154 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1219 1.147 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 489 1.641 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 408 2.259 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.009 _refine_ls_shell.d_res_low 2.061 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 87.560 _refine_ls_shell.number_reflns_R_work 699 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.316 _refine_ls_shell.R_factor_R_free 0.356 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 33 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 732 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DI5 _struct.title 'Crystal structure of a dinb-like protein (bce_4655) from bacillus cereus atcc 10987 at 2.01 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, metal binding protein' _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.entry_id 3DI5 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ;AUTHORS STATE THAT THE RESULTS FROM SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 5 ? LEU A 27 ? THR A 4 LEU A 26 1 ? 23 HELX_P HELX_P2 2 GLU A 30 ? GLN A 34 ? GLU A 29 GLN A 33 5 ? 5 HELX_P HELX_P3 3 THR A 42 ? SER A 59 ? THR A 41 SER A 58 1 ? 18 HELX_P HELX_P4 4 GLY A 60 ? GLY A 62 ? GLY A 59 GLY A 61 5 ? 3 HELX_P HELX_P5 5 SER A 77 ? TRP A 100 ? SER A 76 TRP A 99 1 ? 24 HELX_P HELX_P6 6 THR A 101 ? THR A 106 ? THR A 100 THR A 105 5 ? 6 HELX_P HELX_P7 7 ASN A 118 ? ALA A 143 ? ASN A 117 ALA A 142 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A TYR 3 N ? ? A MSE 1 A TYR 2 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale2 covale both ? A LYS 22 C ? ? ? 1_555 A MSE 23 N ? ? A LYS 21 A MSE 22 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? A MSE 23 C ? ? ? 1_555 A LEU 24 N ? ? A MSE 22 A LEU 23 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale4 covale both ? A PRO 115 C ? ? ? 1_555 A MSE 116 N A ? A PRO 114 A MSE 115 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A PRO 115 C ? ? ? 1_555 A MSE 116 N B ? A PRO 114 A MSE 115 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? A MSE 116 C A ? ? 1_555 A PRO 117 N ? ? A MSE 115 A PRO 116 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale7 covale both ? A MSE 116 C B ? ? 1_555 A PRO 117 N ? ? A MSE 115 A PRO 116 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale8 covale both ? A LEU 122 C ? ? ? 1_555 A MSE 123 N ? ? A LEU 121 A MSE 122 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale9 covale both ? A MSE 123 C ? ? ? 1_555 A THR 124 N ? ? A MSE 122 A THR 123 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? A GLN 135 C ? ? ? 1_555 A MSE 136 N ? ? A GLN 134 A MSE 135 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale11 covale both ? A MSE 136 C ? ? ? 1_555 A THR 137 N ? ? A MSE 135 A THR 136 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale12 covale both ? A LEU 139 C ? ? ? 1_555 A MSE 140 N ? ? A LEU 138 A MSE 139 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale13 covale both ? A MSE 140 C ? ? ? 1_555 A ARG 141 N ? ? A MSE 139 A ARG 140 1_555 ? ? ? ? ? ? ? 1.326 ? ? metalc1 metalc ? ? A HIS 49 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 48 A NI 168 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc2 metalc ? ? A HIS 128 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 127 A NI 168 1_555 ? ? ? ? ? ? ? 2.366 ? ? metalc3 metalc ? ? A HIS 132 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 131 A NI 168 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc4 metalc ? ? B NI . NI ? ? ? 1_555 C HOH . O ? ? A NI 168 A HOH 171 1_555 ? ? ? ? ? ? ? 2.362 ? ? metalc5 metalc ? ? B NI . NI ? ? ? 1_555 C HOH . O ? ? A NI 168 A HOH 175 1_555 ? ? ? ? ? ? ? 2.403 ? ? metalc6 metalc ? ? B NI . NI ? ? ? 1_555 C HOH . O ? ? A NI 168 A HOH 185 1_555 ? ? ? ? ? ? ? 2.275 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 72 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 71 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 73 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 72 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.35 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 108 ? PHE A 111 ? ILE A 107 PHE A 110 A 2 ARG A 114 ? PRO A 117 ? ARG A 113 PRO A 116 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id PHE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 111 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 110 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ARG _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 114 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ARG _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 113 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NI _struct_site.pdbx_auth_seq_id 168 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE NI A 168' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 49 ? HIS A 48 . ? 1_555 ? 2 AC1 6 HIS A 128 ? HIS A 127 . ? 1_555 ? 3 AC1 6 HIS A 132 ? HIS A 131 . ? 1_555 ? 4 AC1 6 HOH C . ? HOH A 171 . ? 1_555 ? 5 AC1 6 HOH C . ? HOH A 175 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 185 . ? 1_555 ? # _atom_sites.entry_id 3DI5 _atom_sites.fract_transf_matrix[1][1] 0.012801 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011878 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019873 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NI O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 TYR 3 2 2 TYR TYR A . n A 1 4 GLN 4 3 3 GLN GLN A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 ILE 6 5 5 ILE ILE A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 GLY 8 7 7 GLY GLY A . n A 1 9 PHE 9 8 8 PHE PHE A . n A 1 10 LEU 10 9 9 LEU LEU A . n A 1 11 GLN 11 10 10 GLN GLN A . n A 1 12 SER 12 11 11 SER SER A . n A 1 13 TRP 13 12 12 TRP TRP A . n A 1 14 THR 14 13 13 THR THR A . n A 1 15 TYR 15 14 14 TYR TYR A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 THR 17 16 16 THR THR A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 SER 19 18 18 SER SER A . n A 1 20 THR 20 19 19 THR THR A . n A 1 21 GLN 21 20 20 GLN GLN A . n A 1 22 LYS 22 21 21 LYS LYS A . n A 1 23 MSE 23 22 22 MSE MSE A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 ASP 25 24 24 ASP ASP A . n A 1 26 VAL 26 25 25 VAL VAL A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 THR 28 27 27 THR THR A . n A 1 29 ASP 29 28 28 ASP ASP A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 SER 31 30 30 SER SER A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 SER 33 32 32 SER SER A . n A 1 34 GLN 34 33 33 GLN GLN A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 PRO 38 37 37 PRO PRO A . n A 1 39 GLY 39 38 38 GLY GLY A . n A 1 40 HIS 40 39 39 HIS HIS A . n A 1 41 TRP 41 40 40 TRP TRP A . n A 1 42 THR 42 41 41 THR THR A . n A 1 43 LEU 43 42 42 LEU LEU A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 ARG 45 44 44 ARG ARG A . n A 1 46 VAL 46 45 45 VAL VAL A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 TRP 48 47 47 TRP TRP A . n A 1 49 HIS 49 48 48 HIS HIS A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 VAL 51 50 50 VAL VAL A . n A 1 52 THR 52 51 51 THR THR A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 ILE 54 53 53 ILE ILE A . n A 1 55 PRO 55 54 54 PRO PRO A . n A 1 56 VAL 56 55 55 VAL VAL A . n A 1 57 ILE 57 56 56 ILE ILE A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 SER 59 58 58 SER SER A . n A 1 60 GLY 60 59 59 GLY GLY A . n A 1 61 THR 61 60 60 THR THR A . n A 1 62 GLY 62 61 61 GLY GLY A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 LYS 64 63 63 LYS LYS A . n A 1 65 PHE 65 64 64 PHE PHE A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 GLY 67 66 66 GLY GLY A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 THR 69 68 68 THR THR A . n A 1 70 LYS 70 69 69 LYS LYS A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 TYR 72 71 71 TYR TYR A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 VAL 74 73 73 VAL VAL A . n A 1 75 PRO 75 74 74 PRO PRO A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 SER 77 76 76 SER SER A . n A 1 78 ALA 78 77 77 ALA ALA A . n A 1 79 LYS 79 78 78 LYS LYS A . n A 1 80 THR 80 79 79 THR THR A . n A 1 81 ILE 81 80 80 ILE ILE A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 TYR 85 84 84 TYR TYR A . n A 1 86 ARG 86 85 85 ARG ARG A . n A 1 87 LYS 87 86 86 LYS LYS A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 ASN 89 88 88 ASN ASN A . n A 1 90 THR 90 89 89 THR THR A . n A 1 91 ALA 91 90 90 ALA ALA A . n A 1 92 PHE 92 91 91 PHE PHE A . n A 1 93 VAL 93 92 92 VAL VAL A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 ALA 95 94 94 ALA ALA A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 GLN 97 96 96 GLN GLN A . n A 1 98 SER 98 97 97 SER SER A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 TRP 100 99 99 TRP TRP A . n A 1 101 THR 101 100 100 THR THR A . n A 1 102 ASP 102 101 101 ASP ASP A . n A 1 103 LYS 103 102 102 LYS LYS A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 THR 106 105 105 THR THR A . n A 1 107 THR 107 106 106 THR THR A . n A 1 108 ILE 108 107 107 ILE ILE A . n A 1 109 ASN 109 108 108 ASN ASN A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 PHE 111 110 110 PHE PHE A . n A 1 112 PHE 112 111 111 PHE PHE A . n A 1 113 GLY 113 112 112 GLY GLY A . n A 1 114 ARG 114 113 113 ARG ARG A . n A 1 115 PRO 115 114 114 PRO PRO A . n A 1 116 MSE 116 115 115 MSE MSE A . n A 1 117 PRO 117 116 116 PRO PRO A . n A 1 118 ASN 118 117 117 ASN ASN A . n A 1 119 SER 119 118 118 SER SER A . n A 1 120 ILE 120 119 119 ILE ILE A . n A 1 121 PHE 121 120 120 PHE PHE A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 MSE 123 122 122 MSE MSE A . n A 1 124 THR 124 123 123 THR THR A . n A 1 125 LEU 125 124 124 LEU LEU A . n A 1 126 ILE 126 125 125 ILE ILE A . n A 1 127 ASN 127 126 126 ASN ASN A . n A 1 128 HIS 128 127 127 HIS HIS A . n A 1 129 GLN 129 128 128 GLN GLN A . n A 1 130 ASN 130 129 129 ASN ASN A . n A 1 131 HIS 131 130 130 HIS HIS A . n A 1 132 HIS 132 131 131 HIS HIS A . n A 1 133 ARG 133 132 132 ARG ARG A . n A 1 134 GLY 134 133 133 GLY GLY A . n A 1 135 GLN 135 134 134 GLN GLN A . n A 1 136 MSE 136 135 135 MSE MSE A . n A 1 137 THR 137 136 136 THR THR A . n A 1 138 VAL 138 137 137 VAL VAL A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 MSE 140 139 139 MSE MSE A . n A 1 141 ARG 141 140 140 ARG ARG A . n A 1 142 GLN 142 141 141 GLN GLN A . n A 1 143 ALA 143 142 142 ALA ALA A . n A 1 144 GLY 144 143 143 GLY GLY A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 THR 146 145 145 THR THR A . n A 1 147 VAL 147 146 146 VAL VAL A . n A 1 148 PRO 148 147 147 PRO PRO A . n A 1 149 GLY 149 148 148 GLY GLY A . n A 1 150 VAL 150 149 149 VAL VAL A . n A 1 151 TYR 151 150 150 TYR TYR A . n A 1 152 GLY 152 151 ? ? ? A . n A 1 153 PRO 153 152 ? ? ? A . n A 1 154 ALA 154 153 ? ? ? A . n A 1 155 LYS 155 154 ? ? ? A . n A 1 156 GLU 156 155 ? ? ? A . n A 1 157 GLU 157 156 ? ? ? A . n A 1 158 TRP 158 157 ? ? ? A . n A 1 159 ALA 159 158 ? ? ? A . n A 1 160 THR 160 159 ? ? ? A . n A 1 161 ALA 161 160 ? ? ? A . n A 1 162 GLY 162 161 ? ? ? A . n A 1 163 MSE 163 162 ? ? ? A . n A 1 164 GLU 164 163 ? ? ? A . n A 1 165 ALA 165 164 ? ? ? A . n A 1 166 PRO 166 165 ? ? ? A . n A 1 167 LYS 167 166 ? ? ? A . n A 1 168 MSE 168 167 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 168 1 NI NI A . C 3 HOH 1 169 2 HOH HOH A . C 3 HOH 2 170 3 HOH HOH A . C 3 HOH 3 171 4 HOH HOH A . C 3 HOH 4 172 5 HOH HOH A . C 3 HOH 5 173 6 HOH HOH A . C 3 HOH 6 174 7 HOH HOH A . C 3 HOH 7 175 8 HOH HOH A . C 3 HOH 8 176 9 HOH HOH A . C 3 HOH 9 177 10 HOH HOH A . C 3 HOH 10 178 11 HOH HOH A . C 3 HOH 11 179 12 HOH HOH A . C 3 HOH 12 180 13 HOH HOH A . C 3 HOH 13 181 14 HOH HOH A . C 3 HOH 14 182 15 HOH HOH A . C 3 HOH 15 183 16 HOH HOH A . C 3 HOH 16 184 17 HOH HOH A . C 3 HOH 17 185 18 HOH HOH A . C 3 HOH 18 186 19 HOH HOH A . C 3 HOH 19 187 20 HOH HOH A . C 3 HOH 20 188 21 HOH HOH A . C 3 HOH 21 189 22 HOH HOH A . C 3 HOH 22 190 23 HOH HOH A . C 3 HOH 23 191 24 HOH HOH A . C 3 HOH 24 192 25 HOH HOH A . C 3 HOH 25 193 26 HOH HOH A . C 3 HOH 26 194 27 HOH HOH A . C 3 HOH 27 195 28 HOH HOH A . C 3 HOH 28 196 29 HOH HOH A . C 3 HOH 29 197 30 HOH HOH A . C 3 HOH 30 198 31 HOH HOH A . C 3 HOH 31 199 32 HOH HOH A . C 3 HOH 32 200 33 HOH HOH A . C 3 HOH 33 201 34 HOH HOH A . C 3 HOH 34 202 35 HOH HOH A . C 3 HOH 35 203 36 HOH HOH A . C 3 HOH 36 204 37 HOH HOH A . C 3 HOH 37 205 38 HOH HOH A . C 3 HOH 38 206 39 HOH HOH A . C 3 HOH 39 207 40 HOH HOH A . C 3 HOH 40 208 41 HOH HOH A . C 3 HOH 41 209 42 HOH HOH A . C 3 HOH 42 210 43 HOH HOH A . C 3 HOH 43 211 44 HOH HOH A . C 3 HOH 44 212 45 HOH HOH A . C 3 HOH 45 213 46 HOH HOH A . C 3 HOH 46 214 47 HOH HOH A . C 3 HOH 47 215 48 HOH HOH A . C 3 HOH 48 216 49 HOH HOH A . C 3 HOH 49 217 50 HOH HOH A . C 3 HOH 50 218 51 HOH HOH A . C 3 HOH 51 219 52 HOH HOH A . C 3 HOH 52 220 53 HOH HOH A . C 3 HOH 53 221 54 HOH HOH A . C 3 HOH 54 222 55 HOH HOH A . C 3 HOH 55 223 56 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 23 A MSE 22 ? MET SELENOMETHIONINE 3 A MSE 116 A MSE 115 ? MET SELENOMETHIONINE 4 A MSE 123 A MSE 122 ? MET SELENOMETHIONINE 5 A MSE 136 A MSE 135 ? MET SELENOMETHIONINE 6 A MSE 140 A MSE 139 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 169 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 49 ? A HIS 48 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 NE2 ? A HIS 128 ? A HIS 127 ? 1_555 83.7 ? 2 NE2 ? A HIS 49 ? A HIS 48 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 NE2 ? A HIS 132 ? A HIS 131 ? 1_555 86.5 ? 3 NE2 ? A HIS 128 ? A HIS 127 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 NE2 ? A HIS 132 ? A HIS 131 ? 1_555 88.7 ? 4 NE2 ? A HIS 49 ? A HIS 48 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 O ? C HOH . ? A HOH 171 ? 1_555 87.7 ? 5 NE2 ? A HIS 128 ? A HIS 127 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 O ? C HOH . ? A HOH 171 ? 1_555 87.5 ? 6 NE2 ? A HIS 132 ? A HIS 131 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 O ? C HOH . ? A HOH 171 ? 1_555 173.4 ? 7 NE2 ? A HIS 49 ? A HIS 48 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 O ? C HOH . ? A HOH 175 ? 1_555 85.9 ? 8 NE2 ? A HIS 128 ? A HIS 127 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 O ? C HOH . ? A HOH 175 ? 1_555 168.6 ? 9 NE2 ? A HIS 132 ? A HIS 131 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 O ? C HOH . ? A HOH 175 ? 1_555 95.5 ? 10 O ? C HOH . ? A HOH 171 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 O ? C HOH . ? A HOH 175 ? 1_555 87.3 ? 11 NE2 ? A HIS 49 ? A HIS 48 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 O ? C HOH . ? A HOH 185 ? 1_555 173.2 ? 12 NE2 ? A HIS 128 ? A HIS 127 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 O ? C HOH . ? A HOH 185 ? 1_555 99.5 ? 13 NE2 ? A HIS 132 ? A HIS 131 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 O ? C HOH . ? A HOH 185 ? 1_555 99.4 ? 14 O ? C HOH . ? A HOH 171 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 O ? C HOH . ? A HOH 185 ? 1_555 86.5 ? 15 O ? C HOH . ? A HOH 175 ? 1_555 NI ? B NI . ? A NI 168 ? 1_555 O ? C HOH . ? A HOH 185 ? 1_555 90.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 22.8597 _pdbx_refine_tls.origin_y 10.4516 _pdbx_refine_tls.origin_z 20.6285 _pdbx_refine_tls.T[1][1] -0.0434 _pdbx_refine_tls.T[2][2] -0.1881 _pdbx_refine_tls.T[3][3] -0.0932 _pdbx_refine_tls.T[1][2] 0.0047 _pdbx_refine_tls.T[1][3] 0.0057 _pdbx_refine_tls.T[2][3] -0.0786 _pdbx_refine_tls.L[1][1] 6.3896 _pdbx_refine_tls.L[2][2] 1.5532 _pdbx_refine_tls.L[3][3] 1.6438 _pdbx_refine_tls.L[1][2] 0.5926 _pdbx_refine_tls.L[1][3] 1.8195 _pdbx_refine_tls.L[2][3] -0.2248 _pdbx_refine_tls.S[1][1] 0.0178 _pdbx_refine_tls.S[2][2] -0.1043 _pdbx_refine_tls.S[3][3] 0.0865 _pdbx_refine_tls.S[1][2] -0.4297 _pdbx_refine_tls.S[1][3] 0.3764 _pdbx_refine_tls.S[2][3] 0.1939 _pdbx_refine_tls.S[2][1] 0.0133 _pdbx_refine_tls.S[3][1] -0.0313 _pdbx_refine_tls.S[3][2] 0.0527 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 8 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 151 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 7 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 150 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3DI5 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PHE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 111 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 35.95 _pdbx_validate_torsion.psi 55.51 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MSE 1 ? CG ? A MSE 2 CG 2 1 Y 1 A MSE 1 ? SE ? A MSE 2 SE 3 1 Y 1 A MSE 1 ? CE ? A MSE 2 CE 4 1 Y 1 A GLN 3 ? CG ? A GLN 4 CG 5 1 Y 1 A GLN 3 ? CD ? A GLN 4 CD 6 1 Y 1 A GLN 3 ? OE1 ? A GLN 4 OE1 7 1 Y 1 A GLN 3 ? NE2 ? A GLN 4 NE2 8 1 Y 1 A GLN 10 ? CG ? A GLN 11 CG 9 1 Y 1 A GLN 10 ? CD ? A GLN 11 CD 10 1 Y 1 A GLN 10 ? OE1 ? A GLN 11 OE1 11 1 Y 1 A GLN 10 ? NE2 ? A GLN 11 NE2 12 1 Y 1 A SER 11 ? OG ? A SER 12 OG 13 1 Y 1 A GLU 17 ? OE1 ? A GLU 18 OE1 14 1 Y 1 A GLU 17 ? OE2 ? A GLU 18 OE2 15 1 Y 1 A GLU 29 ? CD ? A GLU 30 CD 16 1 Y 1 A GLU 29 ? OE1 ? A GLU 30 OE1 17 1 Y 1 A GLU 29 ? OE2 ? A GLU 30 OE2 18 1 Y 1 A GLU 34 ? CG ? A GLU 35 CG 19 1 Y 1 A GLU 34 ? CD ? A GLU 35 CD 20 1 Y 1 A GLU 34 ? OE1 ? A GLU 35 OE1 21 1 Y 1 A GLU 34 ? OE2 ? A GLU 35 OE2 22 1 Y 1 A LYS 63 ? CD ? A LYS 64 CD 23 1 Y 1 A LYS 63 ? CE ? A LYS 64 CE 24 1 Y 1 A LYS 63 ? NZ ? A LYS 64 NZ 25 1 Y 1 A GLU 65 ? CD ? A GLU 66 CD 26 1 Y 1 A GLU 65 ? OE1 ? A GLU 66 OE1 27 1 Y 1 A GLU 65 ? OE2 ? A GLU 66 OE2 28 1 Y 1 A LYS 69 ? CG ? A LYS 70 CG 29 1 Y 1 A LYS 69 ? CD ? A LYS 70 CD 30 1 Y 1 A LYS 69 ? CE ? A LYS 70 CE 31 1 Y 1 A LYS 69 ? NZ ? A LYS 70 NZ 32 1 Y 1 A LYS 86 ? CE ? A LYS 87 CE 33 1 Y 1 A LYS 86 ? NZ ? A LYS 87 NZ 34 1 Y 1 A GLU 98 ? OE1 ? A GLU 99 OE1 35 1 Y 1 A GLU 98 ? OE2 ? A GLU 99 OE2 36 1 Y 1 A ARG 113 ? NE ? A ARG 114 NE 37 1 Y 1 A ARG 113 ? CZ ? A ARG 114 CZ 38 1 Y 1 A ARG 113 ? NH1 ? A ARG 114 NH1 39 1 Y 1 A ARG 113 ? NH2 ? A ARG 114 NH2 40 1 Y 1 A ARG 140 ? NE ? A ARG 141 NE 41 1 Y 1 A ARG 140 ? CZ ? A ARG 141 CZ 42 1 Y 1 A ARG 140 ? NH1 ? A ARG 141 NH1 43 1 Y 1 A ARG 140 ? NH2 ? A ARG 141 NH2 44 1 Y 1 A THR 145 ? OG1 ? A THR 146 OG1 45 1 Y 1 A THR 145 ? CG2 ? A THR 146 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLY 151 ? A GLY 152 3 1 Y 1 A PRO 152 ? A PRO 153 4 1 Y 1 A ALA 153 ? A ALA 154 5 1 Y 1 A LYS 154 ? A LYS 155 6 1 Y 1 A GLU 155 ? A GLU 156 7 1 Y 1 A GLU 156 ? A GLU 157 8 1 Y 1 A TRP 157 ? A TRP 158 9 1 Y 1 A ALA 158 ? A ALA 159 10 1 Y 1 A THR 159 ? A THR 160 11 1 Y 1 A ALA 160 ? A ALA 161 12 1 Y 1 A GLY 161 ? A GLY 162 13 1 Y 1 A MSE 162 ? A MSE 163 14 1 Y 1 A GLU 163 ? A GLU 164 15 1 Y 1 A ALA 164 ? A ALA 165 16 1 Y 1 A PRO 165 ? A PRO 166 17 1 Y 1 A LYS 166 ? A LYS 167 18 1 Y 1 A MSE 167 ? A MSE 168 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #