HEADER TRANSFERASE 22-JUN-08 3DJA TITLE CRYSTAL STRUCTURE OF CPAF SOLVED WITH MAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CT_858; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 23-601; COMPND 5 SYNONYM: CPAF; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDIA TRACHOMATIS; SOURCE 3 ORGANISM_TAXID: 813; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS CPAF, MAD, ACTIVE, DIMER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.CHAI,Z.HUANG REVDAT 2 20-NOV-24 3DJA 1 LINK REVDAT 1 13-JAN-09 3DJA 0 JRNL AUTH Z.HUANG,Y.FENG,D.CHEN,X.WU,S.HUANG,X.WANG,X.XIAO,W.LI, JRNL AUTH 2 N.HUANG,L.GU,G.ZHONG,J.CHAI JRNL TITL STRUCTURAL BASIS FOR ACTIVATION AND INHIBITION OF THE JRNL TITL 2 SECRETED CHLAMYDIA PROTEASE CPAF JRNL REF CELL HOST MICROBE V. 4 529 2008 JRNL REFN ISSN 1931-3128 JRNL PMID 19064254 JRNL DOI 10.1016/J.CHOM.2008.10.005 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 42939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2184 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.32600 REMARK 3 B22 (A**2) : -2.32600 REMARK 3 B33 (A**2) : 4.65100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.501 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DJA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000048107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9641, 0.9792, 0.9793 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60232 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.72500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.75M LI2SO4, 0.1M NA HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.76000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.43500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.38000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.43500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 181.14000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.43500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.43500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.38000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.43500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.43500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 181.14000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 120.76000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 31 REMARK 465 GLU A 32 REMARK 465 LYS A 240 REMARK 465 SER A 241 REMARK 465 MET A 242 REMARK 465 ARG A 243 REMARK 465 SER A 244 REMARK 465 PHE A 245 REMARK 465 PHE A 246 REMARK 465 PRO A 247 REMARK 465 LYS A 248 REMARK 465 LYS A 249 REMARK 465 ASP A 250 REMARK 465 ASP A 251 REMARK 465 ALA A 252 REMARK 465 PHE A 253 REMARK 465 HIS A 254 REMARK 465 ARG A 255 REMARK 465 SER A 256 REMARK 465 SER A 257 REMARK 465 SER A 258 REMARK 465 LEU A 259 REMARK 465 PHE A 260 REMARK 465 TYR A 261 REMARK 465 SER A 262 REMARK 465 PRO A 263 REMARK 465 MET A 264 REMARK 465 VAL A 265 REMARK 465 PRO A 266 REMARK 465 HIS A 267 REMARK 465 PHE A 268 REMARK 465 TRP A 269 REMARK 465 ALA A 270 REMARK 465 GLU A 271 REMARK 465 LEU A 272 REMARK 465 ARG A 273 REMARK 465 ASN A 274 REMARK 465 HIS A 275 REMARK 465 TYR A 276 REMARK 465 ALA A 277 REMARK 465 THR A 278 REMARK 465 SER A 279 REMARK 465 GLY A 280 REMARK 465 LEU A 281 REMARK 465 LYS A 282 REMARK 465 SER A 283 REMARK 465 ALA A 604 REMARK 465 GLU A 605 REMARK 465 ASP A 606 REMARK 465 GLY A 607 REMARK 465 SER A 608 REMARK 465 PHE A 609 REMARK 465 GLY B 31 REMARK 465 GLU B 32 REMARK 465 LYS B 240 REMARK 465 SER B 241 REMARK 465 MET B 242 REMARK 465 ARG B 243 REMARK 465 SER B 244 REMARK 465 PHE B 245 REMARK 465 PHE B 246 REMARK 465 PRO B 247 REMARK 465 LYS B 248 REMARK 465 LYS B 249 REMARK 465 ASP B 250 REMARK 465 ASP B 251 REMARK 465 ALA B 252 REMARK 465 PHE B 253 REMARK 465 HIS B 254 REMARK 465 ARG B 255 REMARK 465 SER B 256 REMARK 465 SER B 257 REMARK 465 SER B 258 REMARK 465 LEU B 259 REMARK 465 PHE B 260 REMARK 465 TYR B 261 REMARK 465 SER B 262 REMARK 465 PRO B 263 REMARK 465 MET B 264 REMARK 465 VAL B 265 REMARK 465 PRO B 266 REMARK 465 HIS B 267 REMARK 465 PHE B 268 REMARK 465 TRP B 269 REMARK 465 ALA B 270 REMARK 465 GLU B 271 REMARK 465 LEU B 272 REMARK 465 ARG B 273 REMARK 465 ASN B 274 REMARK 465 HIS B 275 REMARK 465 TYR B 276 REMARK 465 ALA B 277 REMARK 465 THR B 278 REMARK 465 SER B 279 REMARK 465 GLY B 280 REMARK 465 LEU B 281 REMARK 465 LYS B 282 REMARK 465 SER B 283 REMARK 465 ALA B 604 REMARK 465 GLU B 605 REMARK 465 ASP B 606 REMARK 465 GLY B 607 REMARK 465 SER B 608 REMARK 465 PHE B 609 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 143 NH2 ARG A 204 7465 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 598 N - CA - C ANGL. DEV. = -22.7 DEGREES REMARK 500 THR B 600 N - CA - C ANGL. DEV. = -22.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 56 21.72 -63.04 REMARK 500 ASN A 84 76.32 34.96 REMARK 500 MSE A 136 55.58 -91.16 REMARK 500 ASN A 167 53.53 -113.06 REMARK 500 PRO A 299 109.24 -49.12 REMARK 500 TRP A 302 151.08 175.48 REMARK 500 GLU A 303 137.55 -173.94 REMARK 500 GLU A 305 3.54 47.47 REMARK 500 SER A 314 -161.95 -107.70 REMARK 500 VAL A 315 164.04 173.65 REMARK 500 TRP A 335 -42.26 -26.43 REMARK 500 ASN A 419 52.30 -97.98 REMARK 500 ASP A 432 -6.03 65.32 REMARK 500 LEU A 465 64.37 -169.91 REMARK 500 SER A 466 161.72 -33.80 REMARK 500 PHE A 474 97.64 -63.33 REMARK 500 PRO A 479 144.89 -36.57 REMARK 500 SER A 499 -100.99 43.75 REMARK 500 ARG A 520 136.70 -32.59 REMARK 500 PHE A 533 141.25 -174.96 REMARK 500 LYS A 540 -60.06 -98.02 REMARK 500 ASN A 559 -49.02 71.59 REMARK 500 TYR A 577 57.40 -115.64 REMARK 500 LYS A 578 45.47 10.45 REMARK 500 ASN A 596 -77.60 -80.59 REMARK 500 ASN A 597 -3.14 -54.35 REMARK 500 ASP A 598 77.15 67.94 REMARK 500 THR A 600 74.62 25.95 REMARK 500 ILE A 602 -128.49 -81.85 REMARK 500 PRO B 56 0.17 -65.44 REMARK 500 LEU B 68 -70.43 -66.68 REMARK 500 GLU B 83 -92.92 -63.88 REMARK 500 ASN B 84 78.86 -108.76 REMARK 500 GLU B 114 108.82 -54.57 REMARK 500 LEU B 118 98.16 178.66 REMARK 500 PRO B 119 70.02 -55.73 REMARK 500 ASP B 134 147.85 -174.00 REMARK 500 THR B 137 -140.81 -127.17 REMARK 500 SER B 139 113.29 -17.65 REMARK 500 GLU B 141 -59.10 -14.28 REMARK 500 VAL B 156 -63.76 -17.14 REMARK 500 SER B 166 -17.56 -42.50 REMARK 500 ASN B 167 31.76 -141.99 REMARK 500 PRO B 194 -176.41 -67.87 REMARK 500 ARG B 204 153.55 -45.23 REMARK 500 GLU B 211 103.48 -166.02 REMARK 500 THR B 290 -70.33 -72.20 REMARK 500 PRO B 299 96.46 -51.75 REMARK 500 ASP B 317 -154.03 -89.01 REMARK 500 SER B 334 48.40 -100.91 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DOR RELATED DB: PDB REMARK 900 MATURE CPAF REMARK 900 RELATED ID: 3DPM RELATED DB: PDB REMARK 900 STRUCTURE OF MATURE CPAF COMPLEXED WITH LACTACYSTIN REMARK 900 RELATED ID: 3DPN RELATED DB: PDB REMARK 900 CPAF S499A MUTANT DBREF 3DJA A 31 609 UNP O84866 Y858_CHLTR 23 601 DBREF 3DJA B 31 609 UNP O84866 Y858_CHLTR 23 601 SEQRES 1 A 579 GLY GLU SER LEU VAL CYS LYS ASN ALA LEU GLN ASP LEU SEQRES 2 A 579 SER PHE LEU GLU HIS LEU LEU GLN VAL LYS TYR ALA PRO SEQRES 3 A 579 LYS THR TRP LYS GLU GLN TYR LEU GLY TRP ASP LEU VAL SEQRES 4 A 579 GLN SER SER VAL SER ALA GLN GLN LYS LEU ARG THR GLN SEQRES 5 A 579 GLU ASN PRO SER THR SER PHE CYS GLN GLN VAL LEU ALA SEQRES 6 A 579 ASP PHE ILE GLY GLY LEU ASN ASP PHE HIS ALA GLY VAL SEQRES 7 A 579 THR PHE PHE ALA ILE GLU SER ALA TYR LEU PRO TYR THR SEQRES 8 A 579 VAL GLN LYS SER SER ASP GLY ARG PHE TYR PHE VAL ASP SEQRES 9 A 579 ILE MSE THR PHE SER SER GLU ILE ARG VAL GLY ASP GLU SEQRES 10 A 579 LEU LEU GLU VAL ASP GLY ALA PRO VAL GLN ASP VAL LEU SEQRES 11 A 579 ALA THR LEU TYR GLY SER ASN HIS LYS GLY THR ALA ALA SEQRES 12 A 579 GLU GLU SER ALA ALA LEU ARG THR LEU PHE SER ARG MSE SEQRES 13 A 579 ALA SER LEU GLY HIS LYS VAL PRO SER GLY ARG THR THR SEQRES 14 A 579 LEU LYS ILE ARG ARG PRO PHE GLY THR THR ARG GLU VAL SEQRES 15 A 579 ARG VAL LYS TRP ARG TYR VAL PRO GLU GLY VAL GLY ASP SEQRES 16 A 579 LEU ALA THR ILE ALA PRO SER ILE ARG ALA PRO GLN LEU SEQRES 17 A 579 GLN LYS SER MET ARG SER PHE PHE PRO LYS LYS ASP ASP SEQRES 18 A 579 ALA PHE HIS ARG SER SER SER LEU PHE TYR SER PRO MET SEQRES 19 A 579 VAL PRO HIS PHE TRP ALA GLU LEU ARG ASN HIS TYR ALA SEQRES 20 A 579 THR SER GLY LEU LYS SER GLY TYR ASN ILE GLY SER THR SEQRES 21 A 579 ASP GLY PHE LEU PRO VAL ILE GLY PRO VAL ILE TRP GLU SEQRES 22 A 579 SER GLU GLY LEU PHE ARG ALA TYR ILE SER SER VAL THR SEQRES 23 A 579 ASP GLY ASP GLY LYS SER HIS LYS VAL GLY PHE LEU ARG SEQRES 24 A 579 ILE PRO THR TYR SER TRP GLN ASP MSE GLU ASP PHE ASP SEQRES 25 A 579 PRO SER GLY PRO PRO PRO TRP GLU GLU PHE ALA LYS ILE SEQRES 26 A 579 ILE GLN VAL PHE SER SER ASN THR GLU ALA LEU ILE ILE SEQRES 27 A 579 ASP GLN THR ASN ASN PRO GLY GLY SER VAL LEU TYR LEU SEQRES 28 A 579 TYR ALA LEU LEU SER MSE LEU THR ASP ARG PRO LEU GLU SEQRES 29 A 579 LEU PRO LYS HIS ARG MSE ILE LEU THR GLN ASP GLU VAL SEQRES 30 A 579 VAL ASP ALA LEU ASP TRP LEU THR LEU LEU GLU ASN VAL SEQRES 31 A 579 ASP THR ASN VAL GLU SER ARG LEU ALA LEU GLY ASP ASN SEQRES 32 A 579 MSE GLU GLY TYR THR VAL ASP LEU GLN VAL ALA GLU TYR SEQRES 33 A 579 LEU LYS SER PHE GLY ARG GLN VAL LEU ASN CYS TRP SER SEQRES 34 A 579 LYS GLY ASP ILE GLU LEU SER THR PRO ILE PRO LEU PHE SEQRES 35 A 579 GLY PHE GLU LYS ILE HIS PRO HIS PRO ARG VAL GLN TYR SEQRES 36 A 579 SER LYS PRO ILE CYS VAL LEU ILE ASN GLU GLN ASP PHE SEQRES 37 A 579 SER CYS ALA ASP PHE PHE PRO VAL VAL LEU LYS ASP ASN SEQRES 38 A 579 ASP ARG ALA LEU ILE VAL GLY THR ARG THR ALA GLY ALA SEQRES 39 A 579 GLY GLY PHE VAL PHE ASN VAL GLN PHE PRO ASN ARG THR SEQRES 40 A 579 GLY ILE LYS THR CYS SER LEU THR GLY SER LEU ALA VAL SEQRES 41 A 579 ARG GLU HIS GLY ALA PHE ILE GLU ASN ILE GLY VAL GLU SEQRES 42 A 579 PRO HIS ILE ASP LEU PRO PHE THR ALA ASN ASP ILE ARG SEQRES 43 A 579 TYR LYS GLY TYR SER GLU TYR LEU ASP LYS VAL LYS LYS SEQRES 44 A 579 LEU VAL CYS GLN LEU ILE ASN ASN ASP GLY THR ILE ILE SEQRES 45 A 579 LEU ALA GLU ASP GLY SER PHE SEQRES 1 B 579 GLY GLU SER LEU VAL CYS LYS ASN ALA LEU GLN ASP LEU SEQRES 2 B 579 SER PHE LEU GLU HIS LEU LEU GLN VAL LYS TYR ALA PRO SEQRES 3 B 579 LYS THR TRP LYS GLU GLN TYR LEU GLY TRP ASP LEU VAL SEQRES 4 B 579 GLN SER SER VAL SER ALA GLN GLN LYS LEU ARG THR GLN SEQRES 5 B 579 GLU ASN PRO SER THR SER PHE CYS GLN GLN VAL LEU ALA SEQRES 6 B 579 ASP PHE ILE GLY GLY LEU ASN ASP PHE HIS ALA GLY VAL SEQRES 7 B 579 THR PHE PHE ALA ILE GLU SER ALA TYR LEU PRO TYR THR SEQRES 8 B 579 VAL GLN LYS SER SER ASP GLY ARG PHE TYR PHE VAL ASP SEQRES 9 B 579 ILE MSE THR PHE SER SER GLU ILE ARG VAL GLY ASP GLU SEQRES 10 B 579 LEU LEU GLU VAL ASP GLY ALA PRO VAL GLN ASP VAL LEU SEQRES 11 B 579 ALA THR LEU TYR GLY SER ASN HIS LYS GLY THR ALA ALA SEQRES 12 B 579 GLU GLU SER ALA ALA LEU ARG THR LEU PHE SER ARG MSE SEQRES 13 B 579 ALA SER LEU GLY HIS LYS VAL PRO SER GLY ARG THR THR SEQRES 14 B 579 LEU LYS ILE ARG ARG PRO PHE GLY THR THR ARG GLU VAL SEQRES 15 B 579 ARG VAL LYS TRP ARG TYR VAL PRO GLU GLY VAL GLY ASP SEQRES 16 B 579 LEU ALA THR ILE ALA PRO SER ILE ARG ALA PRO GLN LEU SEQRES 17 B 579 GLN LYS SER MET ARG SER PHE PHE PRO LYS LYS ASP ASP SEQRES 18 B 579 ALA PHE HIS ARG SER SER SER LEU PHE TYR SER PRO MET SEQRES 19 B 579 VAL PRO HIS PHE TRP ALA GLU LEU ARG ASN HIS TYR ALA SEQRES 20 B 579 THR SER GLY LEU LYS SER GLY TYR ASN ILE GLY SER THR SEQRES 21 B 579 ASP GLY PHE LEU PRO VAL ILE GLY PRO VAL ILE TRP GLU SEQRES 22 B 579 SER GLU GLY LEU PHE ARG ALA TYR ILE SER SER VAL THR SEQRES 23 B 579 ASP GLY ASP GLY LYS SER HIS LYS VAL GLY PHE LEU ARG SEQRES 24 B 579 ILE PRO THR TYR SER TRP GLN ASP MSE GLU ASP PHE ASP SEQRES 25 B 579 PRO SER GLY PRO PRO PRO TRP GLU GLU PHE ALA LYS ILE SEQRES 26 B 579 ILE GLN VAL PHE SER SER ASN THR GLU ALA LEU ILE ILE SEQRES 27 B 579 ASP GLN THR ASN ASN PRO GLY GLY SER VAL LEU TYR LEU SEQRES 28 B 579 TYR ALA LEU LEU SER MSE LEU THR ASP ARG PRO LEU GLU SEQRES 29 B 579 LEU PRO LYS HIS ARG MSE ILE LEU THR GLN ASP GLU VAL SEQRES 30 B 579 VAL ASP ALA LEU ASP TRP LEU THR LEU LEU GLU ASN VAL SEQRES 31 B 579 ASP THR ASN VAL GLU SER ARG LEU ALA LEU GLY ASP ASN SEQRES 32 B 579 MSE GLU GLY TYR THR VAL ASP LEU GLN VAL ALA GLU TYR SEQRES 33 B 579 LEU LYS SER PHE GLY ARG GLN VAL LEU ASN CYS TRP SER SEQRES 34 B 579 LYS GLY ASP ILE GLU LEU SER THR PRO ILE PRO LEU PHE SEQRES 35 B 579 GLY PHE GLU LYS ILE HIS PRO HIS PRO ARG VAL GLN TYR SEQRES 36 B 579 SER LYS PRO ILE CYS VAL LEU ILE ASN GLU GLN ASP PHE SEQRES 37 B 579 SER CYS ALA ASP PHE PHE PRO VAL VAL LEU LYS ASP ASN SEQRES 38 B 579 ASP ARG ALA LEU ILE VAL GLY THR ARG THR ALA GLY ALA SEQRES 39 B 579 GLY GLY PHE VAL PHE ASN VAL GLN PHE PRO ASN ARG THR SEQRES 40 B 579 GLY ILE LYS THR CYS SER LEU THR GLY SER LEU ALA VAL SEQRES 41 B 579 ARG GLU HIS GLY ALA PHE ILE GLU ASN ILE GLY VAL GLU SEQRES 42 B 579 PRO HIS ILE ASP LEU PRO PHE THR ALA ASN ASP ILE ARG SEQRES 43 B 579 TYR LYS GLY TYR SER GLU TYR LEU ASP LYS VAL LYS LYS SEQRES 44 B 579 LEU VAL CYS GLN LEU ILE ASN ASN ASP GLY THR ILE ILE SEQRES 45 B 579 LEU ALA GLU ASP GLY SER PHE MODRES 3DJA MSE A 136 MET SELENOMETHIONINE MODRES 3DJA MSE A 186 MET SELENOMETHIONINE MODRES 3DJA MSE A 338 MET SELENOMETHIONINE MODRES 3DJA MSE A 387 MET SELENOMETHIONINE MODRES 3DJA MSE A 400 MET SELENOMETHIONINE MODRES 3DJA MSE A 434 MET SELENOMETHIONINE MODRES 3DJA MSE B 136 MET SELENOMETHIONINE MODRES 3DJA MSE B 186 MET SELENOMETHIONINE MODRES 3DJA MSE B 338 MET SELENOMETHIONINE MODRES 3DJA MSE B 387 MET SELENOMETHIONINE MODRES 3DJA MSE B 400 MET SELENOMETHIONINE MODRES 3DJA MSE B 434 MET SELENOMETHIONINE HET MSE A 136 8 HET MSE A 186 8 HET MSE A 338 8 HET MSE A 387 8 HET MSE A 400 8 HET MSE A 434 8 HET MSE B 136 8 HET MSE B 186 8 HET MSE B 338 8 HET MSE B 387 8 HET MSE B 400 8 HET MSE B 434 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) HELIX 1 1 SER A 33 LYS A 53 1 21 HELIX 2 2 PRO A 56 GLY A 65 1 10 HELIX 3 3 ASP A 67 GLN A 82 1 16 HELIX 4 4 SER A 86 GLY A 100 1 15 HELIX 5 5 VAL A 156 THR A 162 1 7 HELIX 6 6 THR A 171 LEU A 182 1 12 HELIX 7 7 SER A 188 GLY A 190 5 3 HELIX 8 8 ASP A 225 ALA A 230 1 6 HELIX 9 9 PRO A 231 ILE A 233 5 3 HELIX 10 10 SER A 334 MSE A 338 5 5 HELIX 11 11 PRO A 347 THR A 363 1 17 HELIX 12 12 SER A 377 MSE A 387 1 11 HELIX 13 13 THR A 403 LEU A 417 1 15 HELIX 14 14 THR A 422 GLY A 431 1 10 HELIX 15 15 ASP A 440 LYS A 460 1 21 HELIX 16 16 PRO A 470 PHE A 474 5 5 HELIX 17 17 SER A 499 ASN A 511 1 13 HELIX 18 18 THR A 571 TYR A 577 1 7 HELIX 19 19 TYR A 580 ASN A 597 1 18 HELIX 20 20 SER B 33 LYS B 53 1 21 HELIX 21 21 PRO B 56 GLY B 65 1 10 HELIX 22 22 ASP B 67 THR B 81 1 15 HELIX 23 23 SER B 86 GLY B 100 1 15 HELIX 24 24 VAL B 156 THR B 162 1 7 HELIX 25 25 THR B 171 LEU B 182 1 12 HELIX 26 26 ASP B 225 ALA B 230 1 6 HELIX 27 27 PRO B 231 ILE B 233 5 3 HELIX 28 28 SER B 334 MSE B 338 5 5 HELIX 29 29 PRO B 347 THR B 363 1 17 HELIX 30 30 SER B 377 SER B 386 1 10 HELIX 31 31 THR B 403 GLU B 418 1 16 HELIX 32 32 THR B 422 GLY B 431 1 10 HELIX 33 33 ASP B 440 GLY B 461 1 22 HELIX 34 34 PRO B 470 PHE B 474 5 5 HELIX 35 35 SER B 499 ASN B 511 1 13 HELIX 36 36 THR B 571 TYR B 577 1 7 HELIX 37 37 TYR B 580 ASN B 596 1 17 SHEET 1 A 3 GLY A 107 PHE A 110 0 SHEET 2 A 3 ILE A 539 THR A 545 -1 O LYS A 540 N THR A 109 SHEET 3 A 3 VAL A 528 VAL A 531 -1 N PHE A 529 O LEU A 544 SHEET 1 B 3 SER A 184 MSE A 186 0 SHEET 2 B 3 SER A 115 TYR A 117 -1 N ALA A 116 O ARG A 185 SHEET 3 B 3 ARG A 217 VAL A 219 -1 O ARG A 217 N TYR A 117 SHEET 1 C 4 TYR A 120 LYS A 124 0 SHEET 2 C 4 PHE A 130 ILE A 135 -1 O ASP A 134 N THR A 121 SHEET 3 C 4 GLU A 147 VAL A 151 -1 O LEU A 148 N PHE A 130 SHEET 4 C 4 ALA A 154 PRO A 155 -1 O ALA A 154 N VAL A 151 SHEET 1 D 5 TYR A 120 LYS A 124 0 SHEET 2 D 5 PHE A 130 ILE A 135 -1 O ASP A 134 N THR A 121 SHEET 3 D 5 GLU A 147 VAL A 151 -1 O LEU A 148 N PHE A 130 SHEET 4 D 5 ARG A 197 ARG A 203 -1 O LYS A 201 N LEU A 149 SHEET 5 D 5 THR A 209 LYS A 215 -1 O VAL A 214 N THR A 198 SHEET 1 E 7 TRP A 302 GLU A 303 0 SHEET 2 E 7 ARG A 309 SER A 313 -1 O ILE A 312 N TRP A 302 SHEET 3 E 7 VAL A 325 ARG A 329 -1 O VAL A 325 N SER A 313 SHEET 4 E 7 ALA A 365 ASP A 369 1 O ILE A 367 N LEU A 328 SHEET 5 E 7 ILE A 489 ILE A 493 1 O CYS A 490 N ILE A 368 SHEET 6 E 7 ALA A 514 GLY A 518 1 O VAL A 517 N VAL A 491 SHEET 7 E 7 ILE A 566 ASP A 567 1 O ILE A 566 N GLY A 518 SHEET 1 F 2 LEU A 393 GLU A 394 0 SHEET 2 F 2 LYS A 476 ILE A 477 -1 O ILE A 477 N LEU A 393 SHEET 1 G 2 LYS A 397 MSE A 400 0 SHEET 2 G 2 SER A 547 VAL A 550 -1 O VAL A 550 N LYS A 397 SHEET 1 H 2 ASN A 433 MSE A 434 0 SHEET 2 H 2 TYR A 437 THR A 438 -1 O TYR A 437 N MSE A 434 SHEET 1 I 3 GLY B 107 PHE B 110 0 SHEET 2 I 3 ILE B 539 THR B 545 -1 O SER B 543 N GLY B 107 SHEET 3 I 3 VAL B 528 VAL B 531 -1 N VAL B 531 O CYS B 542 SHEET 1 J 3 ARG B 185 MSE B 186 0 SHEET 2 J 3 SER B 115 TYR B 117 -1 N ALA B 116 O ARG B 185 SHEET 3 J 3 ARG B 217 VAL B 219 -1 O ARG B 217 N TYR B 117 SHEET 1 K 2 TYR B 120 GLN B 123 0 SHEET 2 K 2 TYR B 131 ILE B 135 -1 O TYR B 131 N GLN B 123 SHEET 1 L 4 ALA B 154 PRO B 155 0 SHEET 2 L 4 GLU B 147 VAL B 151 -1 N VAL B 151 O ALA B 154 SHEET 3 L 4 ARG B 197 ARG B 203 -1 O LYS B 201 N LEU B 149 SHEET 4 L 4 VAL B 212 LYS B 215 -1 O VAL B 214 N THR B 198 SHEET 1 M 7 VAL B 300 GLU B 303 0 SHEET 2 M 7 ALA B 310 THR B 316 -1 O ILE B 312 N TRP B 302 SHEET 3 M 7 SER B 322 ARG B 329 -1 O VAL B 325 N SER B 313 SHEET 4 M 7 ALA B 365 ASP B 369 1 O ILE B 367 N GLY B 326 SHEET 5 M 7 ILE B 489 ILE B 493 1 O CYS B 490 N LEU B 366 SHEET 6 M 7 LEU B 515 GLY B 518 1 O LEU B 515 N VAL B 491 SHEET 7 M 7 ILE B 566 ASP B 567 1 O ILE B 566 N GLY B 518 SHEET 1 N 2 LEU B 393 GLU B 394 0 SHEET 2 N 2 LYS B 476 ILE B 477 -1 O ILE B 477 N LEU B 393 SHEET 1 O 2 LYS B 397 MSE B 400 0 SHEET 2 O 2 SER B 547 VAL B 550 -1 O VAL B 550 N LYS B 397 SHEET 1 P 2 ASN B 433 MSE B 434 0 SHEET 2 P 2 TYR B 437 THR B 438 -1 O TYR B 437 N MSE B 434 LINK C ILE A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N THR A 137 1555 1555 1.32 LINK C ARG A 185 N MSE A 186 1555 1555 1.33 LINK C MSE A 186 N ALA A 187 1555 1555 1.33 LINK C ASP A 337 N MSE A 338 1555 1555 1.32 LINK C MSE A 338 N GLU A 339 1555 1555 1.33 LINK C SER A 386 N MSE A 387 1555 1555 1.33 LINK C MSE A 387 N LEU A 388 1555 1555 1.33 LINK C ARG A 399 N MSE A 400 1555 1555 1.33 LINK C MSE A 400 N ILE A 401 1555 1555 1.33 LINK C ASN A 433 N MSE A 434 1555 1555 1.33 LINK C MSE A 434 N GLU A 435 1555 1555 1.33 LINK C ILE B 135 N MSE B 136 1555 1555 1.33 LINK C MSE B 136 N THR B 137 1555 1555 1.33 LINK C ARG B 185 N MSE B 186 1555 1555 1.33 LINK C MSE B 186 N ALA B 187 1555 1555 1.33 LINK C ASP B 337 N MSE B 338 1555 1555 1.33 LINK C MSE B 338 N GLU B 339 1555 1555 1.33 LINK C SER B 386 N MSE B 387 1555 1555 1.33 LINK C MSE B 387 N LEU B 388 1555 1555 1.33 LINK C ARG B 399 N MSE B 400 1555 1555 1.33 LINK C MSE B 400 N ILE B 401 1555 1555 1.34 LINK C ASN B 433 N MSE B 434 1555 1555 1.33 LINK C MSE B 434 N GLU B 435 1555 1555 1.33 CRYST1 124.870 124.870 241.520 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008008 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004140 0.00000