HEADER LIGASE 25-JUN-08 3DKM TITLE CRYSTAL STRUCTURE OF THE HECTD1 CPH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE HECTD1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CPH DOMAIN, UNP RESIDUES 1271-1343; COMPND 5 SYNONYM: HECT DOMAIN-CONTAINING PROTEIN 1, E3 LIGASE FOR INHIBIN COMPND 6 RECEPTOR, EULIR; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HECTD1, KIAA1131; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS UBL CONJUGATION, UBL CONJUGATION PATHWAY, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC;, ANK REPEAT, LIGASE, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,L.QIU,Y.LI,C.BOUNTRA,M.WOLKSTROM,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 4 30-AUG-23 3DKM 1 SEQADV REVDAT 3 25-OCT-17 3DKM 1 REMARK REVDAT 2 24-FEB-09 3DKM 1 VERSN REVDAT 1 19-AUG-08 3DKM 0 JRNL AUTH J.R.WALKER,L.QIU,Y.LI,C.BOUNTRA,M.WOLKSTROM,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON JRNL TITL CRYSTAL STRUCTURE OF THE CPH DOMAIN OF THE E3 JRNL TITL 2 UBIQUITIN-PROTEIN LIGASE HECTD1. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 10154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 510 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.1600 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.1860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : 1.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.204 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 641 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 869 ; 1.620 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 80 ; 6.472 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 32 ;22.520 ;24.062 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 97 ;11.656 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 6.960 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 81 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 516 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 269 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 432 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 75 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.158 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 397 ; 1.519 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 614 ; 1.913 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 295 ; 2.287 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 255 ; 2.881 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1264 A 1269 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8211 -0.9880 41.8299 REMARK 3 T TENSOR REMARK 3 T11: -0.0077 T22: 0.1129 REMARK 3 T33: -0.0085 T12: 0.0151 REMARK 3 T13: -0.0489 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 25.6668 L22: 15.9408 REMARK 3 L33: 5.0137 L12: 5.0758 REMARK 3 L13: -4.4810 L23: 1.4541 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: -1.7666 S13: -0.0501 REMARK 3 S21: 0.8025 S22: -0.1269 S23: -1.5753 REMARK 3 S31: 0.1195 S32: 1.1013 S33: 0.0937 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1270 A 1276 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0227 5.2664 43.3614 REMARK 3 T TENSOR REMARK 3 T11: -0.0404 T22: -0.0569 REMARK 3 T33: -0.1037 T12: 0.0114 REMARK 3 T13: -0.0325 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 3.2089 L22: 21.7142 REMARK 3 L33: 6.5966 L12: -6.9514 REMARK 3 L13: -0.1314 L23: -3.1236 REMARK 3 S TENSOR REMARK 3 S11: -0.2975 S12: -0.2630 S13: 0.2805 REMARK 3 S21: 0.8582 S22: 0.0897 S23: -0.7736 REMARK 3 S31: -0.0152 S32: 0.4374 S33: 0.2079 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1277 A 1289 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6945 10.3829 31.7681 REMARK 3 T TENSOR REMARK 3 T11: -0.1145 T22: -0.1180 REMARK 3 T33: -0.1446 T12: 0.0077 REMARK 3 T13: -0.0126 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.4834 L22: 3.3701 REMARK 3 L33: 4.9708 L12: -1.1450 REMARK 3 L13: -2.2291 L23: 2.8464 REMARK 3 S TENSOR REMARK 3 S11: -0.0423 S12: -0.0473 S13: -0.0372 REMARK 3 S21: 0.0232 S22: 0.0606 S23: 0.0135 REMARK 3 S31: 0.0764 S32: 0.0613 S33: -0.0183 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1290 A 1301 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5455 14.2906 24.2269 REMARK 3 T TENSOR REMARK 3 T11: -0.0947 T22: -0.0859 REMARK 3 T33: -0.1239 T12: 0.0083 REMARK 3 T13: -0.0030 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 3.6720 L22: 3.4993 REMARK 3 L33: 0.7070 L12: 1.5813 REMARK 3 L13: -0.8220 L23: -1.0595 REMARK 3 S TENSOR REMARK 3 S11: -0.1203 S12: 0.2082 S13: 0.3055 REMARK 3 S21: -0.2833 S22: 0.1328 S23: 0.2375 REMARK 3 S31: 0.0164 S32: -0.0232 S33: -0.0124 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1302 A 1310 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6987 8.4972 38.4891 REMARK 3 T TENSOR REMARK 3 T11: -0.1100 T22: -0.0662 REMARK 3 T33: -0.1041 T12: -0.0030 REMARK 3 T13: 0.0016 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.7308 L22: 25.0775 REMARK 3 L33: 1.3267 L12: 2.7640 REMARK 3 L13: -1.4949 L23: -1.5298 REMARK 3 S TENSOR REMARK 3 S11: -0.0444 S12: -0.1777 S13: -0.0258 REMARK 3 S21: 0.6672 S22: 0.0410 S23: 0.8033 REMARK 3 S31: 0.0247 S32: -0.0213 S33: 0.0034 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1311 A 1335 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9376 8.3418 31.4040 REMARK 3 T TENSOR REMARK 3 T11: -0.1125 T22: -0.1132 REMARK 3 T33: -0.1609 T12: -0.0044 REMARK 3 T13: -0.0002 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.8350 L22: 5.8505 REMARK 3 L33: 1.1516 L12: -0.4532 REMARK 3 L13: -0.0351 L23: -0.4713 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: -0.0256 S13: -0.0141 REMARK 3 S21: -0.0410 S22: 0.0217 S23: 0.0904 REMARK 3 S31: -0.0217 S32: 0.0258 S33: -0.0249 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1336 A 1342 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4693 15.7756 39.9677 REMARK 3 T TENSOR REMARK 3 T11: -0.0395 T22: 0.0804 REMARK 3 T33: -0.0726 T12: -0.0020 REMARK 3 T13: -0.0228 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 12.4503 L22: 10.8192 REMARK 3 L33: 9.2169 L12: -1.0514 REMARK 3 L13: -6.9888 L23: 8.1271 REMARK 3 S TENSOR REMARK 3 S11: 0.0862 S12: -1.4248 S13: 0.2574 REMARK 3 S21: 0.9082 S22: 0.3803 S23: -0.5987 REMARK 3 S31: 0.5282 S32: 1.3686 S33: -0.4665 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS, ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 3DKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000048155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10709 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 40.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.15600 REMARK 200 FOR SHELL : 11.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2DK3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 5000, 0.1 M BIS-TRIS, PH REMARK 280 6.50, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.85500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.55050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.78200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 25.55050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.85500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.78200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1255 REMARK 465 HIS A 1256 REMARK 465 HIS A 1257 REMARK 465 HIS A 1258 REMARK 465 HIS A 1259 REMARK 465 HIS A 1260 REMARK 465 HIS A 1261 REMARK 465 SER A 1262 REMARK 465 SER A 1263 REMARK 465 ASP A 1343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1265 NE CZ NH1 NH2 REMARK 470 ASP A1341 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A1264 N GLY A1264 CA 0.213 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1291 -135.04 54.02 REMARK 500 ASP A1292 31.43 -98.03 REMARK 500 GLU A1329 13.01 55.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 3DKM A 1273 1343 UNP Q9ULT8 HECD1_HUMAN 1273 1343 SEQADV 3DKM MET A 1255 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM HIS A 1256 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM HIS A 1257 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM HIS A 1258 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM HIS A 1259 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM HIS A 1260 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM HIS A 1261 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM SER A 1262 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM SER A 1263 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM GLY A 1264 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM ARG A 1265 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM GLU A 1266 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM ASN A 1267 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM LEU A 1268 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM TYR A 1269 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM PHE A 1270 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM GLN A 1271 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM GLY A 1272 UNP Q9ULT8 EXPRESSION TAG SEQADV 3DKM THR A 1283 UNP Q9ULT8 ILE 1283 VARIANT SEQRES 1 A 89 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 89 LEU TYR PHE GLN GLY LEU LYS TYR MET VAL PRO GLY ALA SEQRES 3 A 89 ARG VAL THR ARG GLY LEU ASP TRP LYS TRP ARG ASP GLN SEQRES 4 A 89 ASP GLY SER PRO GLN GLY GLU GLY THR VAL THR GLY GLU SEQRES 5 A 89 LEU HIS ASN GLY TRP ILE ASP VAL THR TRP ASP ALA GLY SEQRES 6 A 89 GLY SER ASN SER TYR ARG MET GLY ALA GLU GLY LYS PHE SEQRES 7 A 89 ASP LEU LYS LEU ALA PRO GLY TYR ASP PRO ASP FORMUL 2 HOH *117(H2 O) HELIX 1 1 ASN A 1267 MET A 1276 1 10 HELIX 2 2 GLY A 1327 LYS A 1331 5 5 SHEET 1 A 5 SER A1321 ARG A1325 0 SHEET 2 A 5 TRP A1311 TRP A1316 -1 N VAL A1314 O ASN A1322 SHEET 3 A 5 GLY A1301 VAL A1303 -1 N THR A1302 O THR A1315 SHEET 4 A 5 ARG A1281 ARG A1284 -1 N VAL A1282 O GLY A1301 SHEET 5 A 5 LEU A1334 LEU A1336 -1 O LYS A1335 N THR A1283 CRYST1 33.710 45.564 51.101 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029665 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019569 0.00000