data_3DKN # _entry.id 3DKN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DKN pdb_00003dkn 10.2210/pdb3dkn/pdb RCSB RCSB048156 ? ? WWPDB D_1000048156 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-07-18 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_image_scans 2 3 'Structure model' em_software 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' em_3d_fitting_list 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_software.image_processing_id' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_em_3d_fitting_list.accession_code' 5 4 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 6 4 'Structure model' '_em_3d_fitting_list.source_name' 7 4 'Structure model' '_em_3d_fitting_list.type' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'Chirality errors in several Chain A residues' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3DKN _pdbx_database_status.recvd_initial_deposition_date 2008-06-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-1528 _pdbx_database_related.details 'Cryo-electron microscopy 3D reconstruction of native mammalian ribosome-channel complexes' _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Menetret, J.-F.' 1 'Akey, C.' 2 # _citation.id primary _citation.title 'Single copies of Sec61 and TRAP associate with a nontranslating mammalian ribosome.' _citation.journal_abbrev Structure _citation.journal_volume 16 _citation.page_first 1126 _citation.page_last 1137 _citation.year 2008 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18611385 _citation.pdbx_database_id_DOI 10.1016/j.str.2008.05.003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Menetret, J.F.' 1 ? primary 'Hegde, R.S.' 2 ? primary 'Aguiar, M.' 3 ? primary 'Gygi, S.P.' 4 ? primary 'Park, E.' 5 ? primary 'Rapoport, T.A.' 6 ? primary 'Akey, C.W.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat ;RNA (5'-R(P*CP*GP*UP*GP*CP*CP*AP*AP*GP*CP*UP*GP*CP*GP*AP*UP*AP*AP*GP*C)-3') ; 6421.896 1 ? ? ? 'helix 6' 2 polymer nat ;RNA (5'-R(P*AP*GP*CP*CP*GP*CP*AP*CP*GP*GP*AP*GP*GP*CP*GP*AP*A)-3') ; 5543.422 1 ? ? ? 'helix 7' 3 polymer nat 'RNA (32-MER)' 10289.115 1 ? ? ? 'helix 50' 4 polymer nat 'Preprotein translocase subunit secY' 46736.969 1 ? ? ? ? 5 polymer nat 'Preprotein translocase subunit secE' 7440.889 1 ? ? ? ? 6 polymer nat 'Preprotein translocase subunit secG' 3639.310 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 4 'Protein transport protein SEC61 subunit alpha homolog' 5 'Protein transport protein Sec61 gamma subunit homolog' 6 'Protein transport protein Sec61 subunit beta homolog' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CGUGCCAAGCUGCGAUAAGC CGUGCCAAGCUGCGAUAAGC D ? 2 polyribonucleotide no no AGCCGCACGGAGGCGAA AGCCGCACGGAGGCGAA E ? 3 polyribonucleotide no no GGGUUCCUCAGCACUGCUGAUCAGCUGAGGGU GGGUUCCUCAGCACUGCUGAUCAGCUGAGGGU F ? 4 'polypeptide(L)' no no ;KKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPAIFEFWQTITASRIGTLITLGIGPIVTA GIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIV SKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMI AMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTG VLLTVSIVYRMYEQLLREKVSELHPAIAKL ; ;KKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPAIFEFWQTITASRIGTLITLGIGPIVTA GIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIV SKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMI AMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTG VLLTVSIVYRMYEQLLREKVSELHPAIAKL ; A ? 5 'polypeptide(L)' no no TDFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGILK TDFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGILK B ? 6 'polypeptide(L)' no no ETFSKIRVKPEHVIGVTVAFVIIEAILTYGRF ETFSKIRVKPEHVIGVTVAFVIIEAILTYGRF C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 U n 1 4 G n 1 5 C n 1 6 C n 1 7 A n 1 8 A n 1 9 G n 1 10 C n 1 11 U n 1 12 G n 1 13 C n 1 14 G n 1 15 A n 1 16 U n 1 17 A n 1 18 A n 1 19 G n 1 20 C n 2 1 A n 2 2 G n 2 3 C n 2 4 C n 2 5 G n 2 6 C n 2 7 A n 2 8 C n 2 9 G n 2 10 G n 2 11 A n 2 12 G n 2 13 G n 2 14 C n 2 15 G n 2 16 A n 2 17 A n 3 1 G n 3 2 G n 3 3 G n 3 4 U n 3 5 U n 3 6 C n 3 7 C n 3 8 U n 3 9 C n 3 10 A n 3 11 G n 3 12 C n 3 13 A n 3 14 C n 3 15 U n 3 16 G n 3 17 C n 3 18 U n 3 19 G n 3 20 A n 3 21 U n 3 22 C n 3 23 A n 3 24 G n 3 25 C n 3 26 U n 3 27 G n 3 28 A n 3 29 G n 3 30 G n 3 31 G n 3 32 U n 4 1 LYS n 4 2 LYS n 4 3 LEU n 4 4 ILE n 4 5 PRO n 4 6 ILE n 4 7 LEU n 4 8 GLU n 4 9 LYS n 4 10 ILE n 4 11 PRO n 4 12 GLU n 4 13 VAL n 4 14 GLU n 4 15 LEU n 4 16 PRO n 4 17 VAL n 4 18 LYS n 4 19 GLU n 4 20 ILE n 4 21 THR n 4 22 PHE n 4 23 LYS n 4 24 GLU n 4 25 LYS n 4 26 LEU n 4 27 LYS n 4 28 TRP n 4 29 THR n 4 30 GLY n 4 31 ILE n 4 32 VAL n 4 33 LEU n 4 34 VAL n 4 35 LEU n 4 36 TYR n 4 37 PHE n 4 38 ILE n 4 39 MET n 4 40 GLY n 4 41 CYS n 4 42 ILE n 4 43 ASP n 4 44 VAL n 4 45 TYR n 4 46 THR n 4 47 ALA n 4 48 GLY n 4 49 ALA n 4 50 GLN n 4 51 ILE n 4 52 PRO n 4 53 ALA n 4 54 ILE n 4 55 PHE n 4 56 GLU n 4 57 PHE n 4 58 TRP n 4 59 GLN n 4 60 THR n 4 61 ILE n 4 62 THR n 4 63 ALA n 4 64 SER n 4 65 ARG n 4 66 ILE n 4 67 GLY n 4 68 THR n 4 69 LEU n 4 70 ILE n 4 71 THR n 4 72 LEU n 4 73 GLY n 4 74 ILE n 4 75 GLY n 4 76 PRO n 4 77 ILE n 4 78 VAL n 4 79 THR n 4 80 ALA n 4 81 GLY n 4 82 ILE n 4 83 ILE n 4 84 MET n 4 85 GLN n 4 86 LEU n 4 87 LEU n 4 88 VAL n 4 89 GLY n 4 90 SER n 4 91 GLY n 4 92 ILE n 4 93 ILE n 4 94 GLN n 4 95 MET n 4 96 ASP n 4 97 LEU n 4 98 SER n 4 99 ILE n 4 100 PRO n 4 101 GLU n 4 102 ASN n 4 103 ARG n 4 104 ALA n 4 105 LEU n 4 106 PHE n 4 107 GLN n 4 108 GLY n 4 109 CYS n 4 110 GLN n 4 111 LYS n 4 112 LEU n 4 113 LEU n 4 114 SER n 4 115 ILE n 4 116 ILE n 4 117 MET n 4 118 CYS n 4 119 PHE n 4 120 VAL n 4 121 GLU n 4 122 ALA n 4 123 VAL n 4 124 LEU n 4 125 PHE n 4 126 VAL n 4 127 GLY n 4 128 ALA n 4 129 GLY n 4 130 ALA n 4 131 PHE n 4 132 GLY n 4 133 ILE n 4 134 LEU n 4 135 THR n 4 136 PRO n 4 137 LEU n 4 138 LEU n 4 139 ALA n 4 140 PHE n 4 141 LEU n 4 142 VAL n 4 143 ILE n 4 144 ILE n 4 145 GLN n 4 146 ILE n 4 147 ALA n 4 148 PHE n 4 149 GLY n 4 150 SER n 4 151 ILE n 4 152 ILE n 4 153 LEU n 4 154 ILE n 4 155 TYR n 4 156 LEU n 4 157 ASP n 4 158 GLU n 4 159 ILE n 4 160 VAL n 4 161 SER n 4 162 LYS n 4 163 TYR n 4 164 GLY n 4 165 ILE n 4 166 GLY n 4 167 SER n 4 168 GLY n 4 169 ILE n 4 170 GLY n 4 171 LEU n 4 172 PHE n 4 173 ILE n 4 174 ALA n 4 175 ALA n 4 176 GLY n 4 177 VAL n 4 178 SER n 4 179 GLN n 4 180 THR n 4 181 ILE n 4 182 PHE n 4 183 VAL n 4 184 GLY n 4 185 ALA n 4 186 LEU n 4 187 GLY n 4 188 PRO n 4 189 GLU n 4 190 GLY n 4 191 TYR n 4 192 LEU n 4 193 TRP n 4 194 LYS n 4 195 PHE n 4 196 LEU n 4 197 ASN n 4 198 SER n 4 199 LEU n 4 200 ILE n 4 201 GLN n 4 202 GLY n 4 203 VAL n 4 204 PRO n 4 205 ASN n 4 206 ILE n 4 207 GLU n 4 208 TYR n 4 209 ILE n 4 210 ALA n 4 211 PRO n 4 212 ILE n 4 213 ILE n 4 214 GLY n 4 215 THR n 4 216 ILE n 4 217 ILE n 4 218 VAL n 4 219 PHE n 4 220 LEU n 4 221 MET n 4 222 VAL n 4 223 VAL n 4 224 TYR n 4 225 ALA n 4 226 GLU n 4 227 CYS n 4 228 MET n 4 229 ARG n 4 230 VAL n 4 231 GLU n 4 232 ILE n 4 233 PRO n 4 234 LEU n 4 235 ALA n 4 236 HIS n 4 237 GLY n 4 238 ARG n 4 239 ILE n 4 240 LYS n 4 241 GLY n 4 242 ALA n 4 243 VAL n 4 244 GLY n 4 245 LYS n 4 246 TYR n 4 247 PRO n 4 248 ILE n 4 249 LYS n 4 250 PHE n 4 251 VAL n 4 252 TYR n 4 253 VAL n 4 254 SER n 4 255 ASN n 4 256 ILE n 4 257 PRO n 4 258 VAL n 4 259 ILE n 4 260 LEU n 4 261 ALA n 4 262 ALA n 4 263 ALA n 4 264 LEU n 4 265 PHE n 4 266 ALA n 4 267 ASN n 4 268 ILE n 4 269 GLN n 4 270 LEU n 4 271 TRP n 4 272 GLY n 4 273 LEU n 4 274 ALA n 4 275 LEU n 4 276 TYR n 4 277 ARG n 4 278 MET n 4 279 GLY n 4 280 ILE n 4 281 PRO n 4 282 ILE n 4 283 LEU n 4 284 GLY n 4 285 HIS n 4 286 TYR n 4 287 GLU n 4 288 GLY n 4 289 GLY n 4 290 ARG n 4 291 ALA n 4 292 VAL n 4 293 ASP n 4 294 GLY n 4 295 ILE n 4 296 ALA n 4 297 TYR n 4 298 TYR n 4 299 LEU n 4 300 SER n 4 301 THR n 4 302 PRO n 4 303 TYR n 4 304 GLY n 4 305 LEU n 4 306 SER n 4 307 SER n 4 308 VAL n 4 309 ILE n 4 310 SER n 4 311 ASP n 4 312 PRO n 4 313 ILE n 4 314 HIS n 4 315 ALA n 4 316 ILE n 4 317 VAL n 4 318 TYR n 4 319 MET n 4 320 ILE n 4 321 ALA n 4 322 MET n 4 323 ILE n 4 324 ILE n 4 325 THR n 4 326 CYS n 4 327 VAL n 4 328 MET n 4 329 PHE n 4 330 GLY n 4 331 ILE n 4 332 PHE n 4 333 TRP n 4 334 VAL n 4 335 GLU n 4 336 THR n 4 337 THR n 4 338 GLY n 4 339 LEU n 4 340 ASP n 4 341 PRO n 4 342 LYS n 4 343 SER n 4 344 MET n 4 345 ALA n 4 346 LYS n 4 347 ARG n 4 348 ILE n 4 349 GLY n 4 350 SER n 4 351 LEU n 4 352 GLY n 4 353 MET n 4 354 ALA n 4 355 ILE n 4 356 LYS n 4 357 GLY n 4 358 PHE n 4 359 ARG n 4 360 LYS n 4 361 SER n 4 362 ALA n 4 363 ILE n 4 364 GLU n 4 365 HIS n 4 366 ARG n 4 367 LEU n 4 368 LYS n 4 369 ARG n 4 370 TYR n 4 371 ILE n 4 372 PRO n 4 373 PRO n 4 374 LEU n 4 375 THR n 4 376 VAL n 4 377 MET n 4 378 SER n 4 379 SER n 4 380 ALA n 4 381 PHE n 4 382 VAL n 4 383 GLY n 4 384 PHE n 4 385 LEU n 4 386 ALA n 4 387 THR n 4 388 ILE n 4 389 ALA n 4 390 ASN n 4 391 PHE n 4 392 ILE n 4 393 GLY n 4 394 ALA n 4 395 LEU n 4 396 GLY n 4 397 GLY n 4 398 GLY n 4 399 THR n 4 400 GLY n 4 401 VAL n 4 402 LEU n 4 403 LEU n 4 404 THR n 4 405 VAL n 4 406 SER n 4 407 ILE n 4 408 VAL n 4 409 TYR n 4 410 ARG n 4 411 MET n 4 412 TYR n 4 413 GLU n 4 414 GLN n 4 415 LEU n 4 416 LEU n 4 417 ARG n 4 418 GLU n 4 419 LYS n 4 420 VAL n 4 421 SER n 4 422 GLU n 4 423 LEU n 4 424 HIS n 4 425 PRO n 4 426 ALA n 4 427 ILE n 4 428 ALA n 4 429 LYS n 4 430 LEU n 5 1 THR n 5 2 ASP n 5 3 PHE n 5 4 ASN n 5 5 GLN n 5 6 LYS n 5 7 ILE n 5 8 GLU n 5 9 GLN n 5 10 LEU n 5 11 LYS n 5 12 GLU n 5 13 PHE n 5 14 ILE n 5 15 GLU n 5 16 GLU n 5 17 CYS n 5 18 ARG n 5 19 ARG n 5 20 VAL n 5 21 TRP n 5 22 LEU n 5 23 VAL n 5 24 LEU n 5 25 LYS n 5 26 LYS n 5 27 PRO n 5 28 THR n 5 29 LYS n 5 30 ASP n 5 31 GLU n 5 32 TYR n 5 33 LEU n 5 34 ALA n 5 35 VAL n 5 36 ALA n 5 37 LYS n 5 38 VAL n 5 39 THR n 5 40 ALA n 5 41 LEU n 5 42 GLY n 5 43 ILE n 5 44 SER n 5 45 LEU n 5 46 LEU n 5 47 GLY n 5 48 ILE n 5 49 ILE n 5 50 GLY n 5 51 TYR n 5 52 ILE n 5 53 ILE n 5 54 HIS n 5 55 VAL n 5 56 PRO n 5 57 ALA n 5 58 THR n 5 59 TYR n 5 60 ILE n 5 61 LYS n 5 62 GLY n 5 63 ILE n 5 64 LEU n 5 65 LYS n 6 1 GLU n 6 2 THR n 6 3 PHE n 6 4 SER n 6 5 LYS n 6 6 ILE n 6 7 ARG n 6 8 VAL n 6 9 LYS n 6 10 PRO n 6 11 GLU n 6 12 HIS n 6 13 VAL n 6 14 ILE n 6 15 GLY n 6 16 VAL n 6 17 THR n 6 18 VAL n 6 19 ALA n 6 20 PHE n 6 21 VAL n 6 22 ILE n 6 23 ILE n 6 24 GLU n 6 25 ALA n 6 26 ILE n 6 27 LEU n 6 28 THR n 6 29 TYR n 6 30 GLY n 6 31 ARG n 6 32 PHE n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Canis lupus familiaris' 9615 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Canis lupus familiaris' 9615 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? ? 'Canis lupus familiaris' 9615 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample ? ? ? 'Canis lupus familiaris' 9615 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 5 1 sample ? ? ? 'Canis lupus familiaris' 9615 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 6 1 sample ? ? ? 'Canis lupus familiaris' 9615 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 53 53 C C D . n A 1 2 G 2 54 54 G G D . n A 1 3 U 3 55 55 U U D . n A 1 4 G 4 56 56 G G D . n A 1 5 C 5 57 57 C C D . n A 1 6 C 6 58 58 C C D . n A 1 7 A 7 59 59 A A D . n A 1 8 A 8 60 60 A A D . n A 1 9 G 9 61 61 G G D . n A 1 10 C 10 62 62 C C D . n A 1 11 U 11 63 63 U U D . n A 1 12 G 12 64 64 G G D . n A 1 13 C 13 65 65 C C D . n A 1 14 G 14 66 66 G G D . n A 1 15 A 15 67 67 A A D . n A 1 16 U 16 68 68 U U D . n A 1 17 A 17 69 69 A A D . n A 1 18 A 18 70 70 A A D . n A 1 19 G 19 71 71 G G D . n A 1 20 C 20 72 72 C C D . n B 2 1 A 1 80 80 A A E . n B 2 2 G 2 81 81 G G E . n B 2 3 C 3 82 82 C C E . n B 2 4 C 4 83 83 C C E . n B 2 5 G 5 84 84 G G E . n B 2 6 C 6 85 85 C C E . n B 2 7 A 7 86 86 A A E . n B 2 8 C 8 87 87 C C E . n B 2 9 G 9 88 88 G G E . n B 2 10 G 10 89 89 G G E . n B 2 11 A 11 90 90 A A E . n B 2 12 G 12 91 91 G G E . n B 2 13 G 13 92 92 G G E . n B 2 14 C 14 93 93 C C E . n B 2 15 G 15 94 94 G G E . n B 2 16 A 16 95 95 A A E . n B 2 17 A 17 96 96 A A E . n C 3 1 G 1 1415 1415 G G F . n C 3 2 G 2 1416 1416 G G F . n C 3 3 G 3 1417 1417 G G F . n C 3 4 U 4 1418 1418 U U F . n C 3 5 U 5 1419 1419 U U F . n C 3 6 C 6 1420 1420 C C F . n C 3 7 C 7 1421 1421 C C F . n C 3 8 U 8 1422 1422 U U F . n C 3 9 C 9 1423 1423 C C F . n C 3 10 A 10 1424 1424 A A F . n C 3 11 G 11 1425 1425 G G F . n C 3 12 C 12 1426 1426 C C F . n C 3 13 A 13 1427 1427 A A F . n C 3 14 C 14 1428 1428 C C F . n C 3 15 U 15 1429 1429 U U F . n C 3 16 G 16 1430 1430 G G F . n C 3 17 C 17 1431 1431 C C F . n C 3 18 U 18 1432 1432 U U F . n C 3 19 G 19 1433 1433 G G F . n C 3 20 A 20 1434 1434 A A F . n C 3 21 U 21 1435 1435 U U F . n C 3 22 C 22 1436 1436 C C F . n C 3 23 A 23 1437 1437 A A F . n C 3 24 G 24 1438 1438 G G F . n C 3 25 C 25 1439 1439 C C F . n C 3 26 U 26 1440 1440 U U F . n C 3 27 G 27 1441 1441 G G F . n C 3 28 A 28 1442 1442 A A F . n C 3 29 G 29 1443 1443 G G F . n C 3 30 G 30 1444 1444 G G F . n C 3 31 G 31 1445 1445 G G F . n C 3 32 U 32 1446 1446 U U F . n D 4 1 LYS 1 2 2 LYS LYS A . n D 4 2 LYS 2 3 3 LYS LYS A . n D 4 3 LEU 3 4 4 LEU LEU A . n D 4 4 ILE 4 5 5 ILE ILE A . n D 4 5 PRO 5 6 6 PRO PRO A . n D 4 6 ILE 6 7 7 ILE ILE A . n D 4 7 LEU 7 8 8 LEU LEU A . n D 4 8 GLU 8 9 9 GLU GLU A . n D 4 9 LYS 9 10 10 LYS LYS A . n D 4 10 ILE 10 11 11 ILE ILE A . n D 4 11 PRO 11 12 12 PRO PRO A . n D 4 12 GLU 12 13 13 GLU GLU A . n D 4 13 VAL 13 14 14 VAL VAL A . n D 4 14 GLU 14 15 15 GLU GLU A . n D 4 15 LEU 15 16 16 LEU LEU A . n D 4 16 PRO 16 17 17 PRO PRO A . n D 4 17 VAL 17 18 18 VAL VAL A . n D 4 18 LYS 18 19 19 LYS LYS A . n D 4 19 GLU 19 20 20 GLU GLU A . n D 4 20 ILE 20 21 21 ILE ILE A . n D 4 21 THR 21 22 22 THR THR A . n D 4 22 PHE 22 23 23 PHE PHE A . n D 4 23 LYS 23 24 24 LYS LYS A . n D 4 24 GLU 24 25 25 GLU GLU A . n D 4 25 LYS 25 26 26 LYS LYS A . n D 4 26 LEU 26 27 27 LEU LEU A . n D 4 27 LYS 27 28 28 LYS LYS A . n D 4 28 TRP 28 29 29 TRP TRP A . n D 4 29 THR 29 30 30 THR THR A . n D 4 30 GLY 30 31 31 GLY GLY A . n D 4 31 ILE 31 32 32 ILE ILE A . n D 4 32 VAL 32 33 33 VAL VAL A . n D 4 33 LEU 33 34 34 LEU LEU A . n D 4 34 VAL 34 35 35 VAL VAL A . n D 4 35 LEU 35 36 36 LEU LEU A . n D 4 36 TYR 36 37 37 TYR TYR A . n D 4 37 PHE 37 38 38 PHE PHE A . n D 4 38 ILE 38 39 39 ILE ILE A . n D 4 39 MET 39 40 40 MET MET A . n D 4 40 GLY 40 41 41 GLY GLY A . n D 4 41 CYS 41 42 42 CYS CYS A . n D 4 42 ILE 42 43 43 ILE ILE A . n D 4 43 ASP 43 44 44 ASP ASP A . n D 4 44 VAL 44 45 45 VAL VAL A . n D 4 45 TYR 45 46 46 TYR TYR A . n D 4 46 THR 46 47 47 THR THR A . n D 4 47 ALA 47 48 48 ALA ALA A . n D 4 48 GLY 48 49 49 GLY GLY A . n D 4 49 ALA 49 50 50 ALA ALA A . n D 4 50 GLN 50 51 51 GLN GLN A . n D 4 51 ILE 51 52 52 ILE ILE A . n D 4 52 PRO 52 53 53 PRO PRO A . n D 4 53 ALA 53 54 54 ALA ALA A . n D 4 54 ILE 54 55 55 ILE ILE A . n D 4 55 PHE 55 56 56 PHE PHE A . n D 4 56 GLU 56 57 57 GLU GLU A . n D 4 57 PHE 57 58 58 PHE PHE A . n D 4 58 TRP 58 59 59 TRP TRP A . n D 4 59 GLN 59 60 60 GLN GLN A . n D 4 60 THR 60 61 61 THR THR A . n D 4 61 ILE 61 62 62 ILE ILE A . n D 4 62 THR 62 63 63 THR THR A . n D 4 63 ALA 63 64 64 ALA ALA A . n D 4 64 SER 64 65 65 SER SER A . n D 4 65 ARG 65 66 66 ARG ARG A . n D 4 66 ILE 66 67 67 ILE ILE A . n D 4 67 GLY 67 68 68 GLY GLY A . n D 4 68 THR 68 69 69 THR THR A . n D 4 69 LEU 69 70 70 LEU LEU A . n D 4 70 ILE 70 71 71 ILE ILE A . n D 4 71 THR 71 72 72 THR THR A . n D 4 72 LEU 72 73 73 LEU LEU A . n D 4 73 GLY 73 74 74 GLY GLY A . n D 4 74 ILE 74 75 75 ILE ILE A . n D 4 75 GLY 75 76 76 GLY GLY A . n D 4 76 PRO 76 77 77 PRO PRO A . n D 4 77 ILE 77 78 78 ILE ILE A . n D 4 78 VAL 78 79 79 VAL VAL A . n D 4 79 THR 79 80 80 THR THR A . n D 4 80 ALA 80 81 81 ALA ALA A . n D 4 81 GLY 81 82 82 GLY GLY A . n D 4 82 ILE 82 83 83 ILE ILE A . n D 4 83 ILE 83 84 84 ILE ILE A . n D 4 84 MET 84 85 85 MET MET A . n D 4 85 GLN 85 86 86 GLN GLN A . n D 4 86 LEU 86 87 87 LEU LEU A . n D 4 87 LEU 87 88 88 LEU LEU A . n D 4 88 VAL 88 89 89 VAL VAL A . n D 4 89 GLY 89 90 90 GLY GLY A . n D 4 90 SER 90 91 91 SER SER A . n D 4 91 GLY 91 92 92 GLY GLY A . n D 4 92 ILE 92 93 93 ILE ILE A . n D 4 93 ILE 93 94 94 ILE ILE A . n D 4 94 GLN 94 95 95 GLN GLN A . n D 4 95 MET 95 96 96 MET MET A . n D 4 96 ASP 96 97 97 ASP ASP A . n D 4 97 LEU 97 98 98 LEU LEU A . n D 4 98 SER 98 99 99 SER SER A . n D 4 99 ILE 99 100 100 ILE ILE A . n D 4 100 PRO 100 101 101 PRO PRO A . n D 4 101 GLU 101 102 102 GLU GLU A . n D 4 102 ASN 102 103 103 ASN ASN A . n D 4 103 ARG 103 104 104 ARG ARG A . n D 4 104 ALA 104 105 105 ALA ALA A . n D 4 105 LEU 105 106 106 LEU LEU A . n D 4 106 PHE 106 107 107 PHE PHE A . n D 4 107 GLN 107 108 108 GLN GLN A . n D 4 108 GLY 108 109 109 GLY GLY A . n D 4 109 CYS 109 110 110 CYS CYS A . n D 4 110 GLN 110 111 111 GLN GLN A . n D 4 111 LYS 111 112 112 LYS LYS A . n D 4 112 LEU 112 113 113 LEU LEU A . n D 4 113 LEU 113 114 114 LEU LEU A . n D 4 114 SER 114 115 115 SER SER A . n D 4 115 ILE 115 116 116 ILE ILE A . n D 4 116 ILE 116 117 117 ILE ILE A . n D 4 117 MET 117 118 118 MET MET A . n D 4 118 CYS 118 119 119 CYS CYS A . n D 4 119 PHE 119 120 120 PHE PHE A . n D 4 120 VAL 120 121 121 VAL VAL A . n D 4 121 GLU 121 122 122 GLU GLU A . n D 4 122 ALA 122 123 123 ALA ALA A . n D 4 123 VAL 123 124 124 VAL VAL A . n D 4 124 LEU 124 125 125 LEU LEU A . n D 4 125 PHE 125 126 126 PHE PHE A . n D 4 126 VAL 126 127 127 VAL VAL A . n D 4 127 GLY 127 128 128 GLY GLY A . n D 4 128 ALA 128 129 129 ALA ALA A . n D 4 129 GLY 129 130 130 GLY GLY A . n D 4 130 ALA 130 131 131 ALA ALA A . n D 4 131 PHE 131 132 132 PHE PHE A . n D 4 132 GLY 132 133 133 GLY GLY A . n D 4 133 ILE 133 134 134 ILE ILE A . n D 4 134 LEU 134 135 135 LEU LEU A . n D 4 135 THR 135 136 136 THR THR A . n D 4 136 PRO 136 137 137 PRO PRO A . n D 4 137 LEU 137 138 138 LEU LEU A . n D 4 138 LEU 138 139 139 LEU LEU A . n D 4 139 ALA 139 140 140 ALA ALA A . n D 4 140 PHE 140 141 141 PHE PHE A . n D 4 141 LEU 141 142 142 LEU LEU A . n D 4 142 VAL 142 143 143 VAL VAL A . n D 4 143 ILE 143 144 144 ILE ILE A . n D 4 144 ILE 144 145 145 ILE ILE A . n D 4 145 GLN 145 146 146 GLN GLN A . n D 4 146 ILE 146 147 147 ILE ILE A . n D 4 147 ALA 147 148 148 ALA ALA A . n D 4 148 PHE 148 149 149 PHE PHE A . n D 4 149 GLY 149 150 150 GLY GLY A . n D 4 150 SER 150 151 151 SER SER A . n D 4 151 ILE 151 152 152 ILE ILE A . n D 4 152 ILE 152 153 153 ILE ILE A . n D 4 153 LEU 153 154 154 LEU LEU A . n D 4 154 ILE 154 155 155 ILE ILE A . n D 4 155 TYR 155 156 156 TYR TYR A . n D 4 156 LEU 156 157 157 LEU LEU A . n D 4 157 ASP 157 158 158 ASP ASP A . n D 4 158 GLU 158 159 159 GLU GLU A . n D 4 159 ILE 159 160 160 ILE ILE A . n D 4 160 VAL 160 161 161 VAL VAL A . n D 4 161 SER 161 162 162 SER SER A . n D 4 162 LYS 162 163 163 LYS LYS A . n D 4 163 TYR 163 164 164 TYR TYR A . n D 4 164 GLY 164 165 165 GLY GLY A . n D 4 165 ILE 165 166 166 ILE ILE A . n D 4 166 GLY 166 167 167 GLY GLY A . n D 4 167 SER 167 168 168 SER SER A . n D 4 168 GLY 168 169 169 GLY GLY A . n D 4 169 ILE 169 170 170 ILE ILE A . n D 4 170 GLY 170 171 171 GLY GLY A . n D 4 171 LEU 171 172 172 LEU LEU A . n D 4 172 PHE 172 173 173 PHE PHE A . n D 4 173 ILE 173 174 174 ILE ILE A . n D 4 174 ALA 174 175 175 ALA ALA A . n D 4 175 ALA 175 176 176 ALA ALA A . n D 4 176 GLY 176 177 177 GLY GLY A . n D 4 177 VAL 177 178 178 VAL VAL A . n D 4 178 SER 178 179 179 SER SER A . n D 4 179 GLN 179 180 180 GLN GLN A . n D 4 180 THR 180 181 181 THR THR A . n D 4 181 ILE 181 182 182 ILE ILE A . n D 4 182 PHE 182 183 183 PHE PHE A . n D 4 183 VAL 183 184 184 VAL VAL A . n D 4 184 GLY 184 185 185 GLY GLY A . n D 4 185 ALA 185 186 186 ALA ALA A . n D 4 186 LEU 186 187 187 LEU LEU A . n D 4 187 GLY 187 188 188 GLY GLY A . n D 4 188 PRO 188 189 189 PRO PRO A . n D 4 189 GLU 189 190 190 GLU GLU A . n D 4 190 GLY 190 191 191 GLY GLY A . n D 4 191 TYR 191 192 192 TYR TYR A . n D 4 192 LEU 192 193 193 LEU LEU A . n D 4 193 TRP 193 194 194 TRP TRP A . n D 4 194 LYS 194 195 195 LYS LYS A . n D 4 195 PHE 195 196 196 PHE PHE A . n D 4 196 LEU 196 197 197 LEU LEU A . n D 4 197 ASN 197 198 198 ASN ASN A . n D 4 198 SER 198 199 199 SER SER A . n D 4 199 LEU 199 200 200 LEU LEU A . n D 4 200 ILE 200 201 201 ILE ILE A . n D 4 201 GLN 201 202 202 GLN GLN A . n D 4 202 GLY 202 203 203 GLY GLY A . n D 4 203 VAL 203 204 204 VAL VAL A . n D 4 204 PRO 204 205 205 PRO PRO A . n D 4 205 ASN 205 206 206 ASN ASN A . n D 4 206 ILE 206 207 207 ILE ILE A . n D 4 207 GLU 207 208 208 GLU GLU A . n D 4 208 TYR 208 209 209 TYR TYR A . n D 4 209 ILE 209 210 210 ILE ILE A . n D 4 210 ALA 210 211 211 ALA ALA A . n D 4 211 PRO 211 212 212 PRO PRO A . n D 4 212 ILE 212 213 213 ILE ILE A . n D 4 213 ILE 213 214 214 ILE ILE A . n D 4 214 GLY 214 215 215 GLY GLY A . n D 4 215 THR 215 216 216 THR THR A . n D 4 216 ILE 216 217 217 ILE ILE A . n D 4 217 ILE 217 218 218 ILE ILE A . n D 4 218 VAL 218 219 219 VAL VAL A . n D 4 219 PHE 219 220 220 PHE PHE A . n D 4 220 LEU 220 221 221 LEU LEU A . n D 4 221 MET 221 222 222 MET MET A . n D 4 222 VAL 222 223 223 VAL VAL A . n D 4 223 VAL 223 224 224 VAL VAL A . n D 4 224 TYR 224 225 225 TYR TYR A . n D 4 225 ALA 225 226 226 ALA ALA A . n D 4 226 GLU 226 227 227 GLU GLU A . n D 4 227 CYS 227 228 228 CYS CYS A . n D 4 228 MET 228 229 229 MET MET A . n D 4 229 ARG 229 230 230 ARG ARG A . n D 4 230 VAL 230 231 231 VAL VAL A . n D 4 231 GLU 231 232 232 GLU GLU A . n D 4 232 ILE 232 233 233 ILE ILE A . n D 4 233 PRO 233 234 234 PRO PRO A . n D 4 234 LEU 234 235 235 LEU LEU A . n D 4 235 ALA 235 236 236 ALA ALA A . n D 4 236 HIS 236 237 237 HIS HIS A . n D 4 237 GLY 237 238 238 GLY GLY A . n D 4 238 ARG 238 239 239 ARG ARG A . n D 4 239 ILE 239 240 240 ILE ILE A . n D 4 240 LYS 240 241 241 LYS LYS A . n D 4 241 GLY 241 242 242 GLY GLY A . n D 4 242 ALA 242 243 243 ALA ALA A . n D 4 243 VAL 243 244 244 VAL VAL A . n D 4 244 GLY 244 245 245 GLY GLY A . n D 4 245 LYS 245 246 246 LYS LYS A . n D 4 246 TYR 246 247 247 TYR TYR A . n D 4 247 PRO 247 248 248 PRO PRO A . n D 4 248 ILE 248 249 249 ILE ILE A . n D 4 249 LYS 249 250 250 LYS LYS A . n D 4 250 PHE 250 251 251 PHE PHE A . n D 4 251 VAL 251 252 252 VAL VAL A . n D 4 252 TYR 252 253 253 TYR TYR A . n D 4 253 VAL 253 254 254 VAL VAL A . n D 4 254 SER 254 255 255 SER SER A . n D 4 255 ASN 255 256 256 ASN ASN A . n D 4 256 ILE 256 257 257 ILE ILE A . n D 4 257 PRO 257 258 258 PRO PRO A . n D 4 258 VAL 258 259 259 VAL VAL A . n D 4 259 ILE 259 260 260 ILE ILE A . n D 4 260 LEU 260 261 261 LEU LEU A . n D 4 261 ALA 261 262 262 ALA ALA A . n D 4 262 ALA 262 263 263 ALA ALA A . n D 4 263 ALA 263 264 264 ALA ALA A . n D 4 264 LEU 264 265 265 LEU LEU A . n D 4 265 PHE 265 266 266 PHE PHE A . n D 4 266 ALA 266 267 267 ALA ALA A . n D 4 267 ASN 267 268 268 ASN ASN A . n D 4 268 ILE 268 269 269 ILE ILE A . n D 4 269 GLN 269 270 270 GLN GLN A . n D 4 270 LEU 270 271 271 LEU LEU A . n D 4 271 TRP 271 272 272 TRP TRP A . n D 4 272 GLY 272 273 273 GLY GLY A . n D 4 273 LEU 273 274 274 LEU LEU A . n D 4 274 ALA 274 275 275 ALA ALA A . n D 4 275 LEU 275 276 276 LEU LEU A . n D 4 276 TYR 276 277 277 TYR TYR A . n D 4 277 ARG 277 278 278 ARG ARG A . n D 4 278 MET 278 279 279 MET MET A . n D 4 279 GLY 279 280 280 GLY GLY A . n D 4 280 ILE 280 281 281 ILE ILE A . n D 4 281 PRO 281 282 282 PRO PRO A . n D 4 282 ILE 282 283 283 ILE ILE A . n D 4 283 LEU 283 284 284 LEU LEU A . n D 4 284 GLY 284 285 285 GLY GLY A . n D 4 285 HIS 285 286 286 HIS HIS A . n D 4 286 TYR 286 287 287 TYR TYR A . n D 4 287 GLU 287 288 288 GLU GLU A . n D 4 288 GLY 288 289 289 GLY GLY A . n D 4 289 GLY 289 290 290 GLY GLY A . n D 4 290 ARG 290 291 291 ARG ARG A . n D 4 291 ALA 291 292 292 ALA ALA A . n D 4 292 VAL 292 293 293 VAL VAL A . n D 4 293 ASP 293 294 294 ASP ASP A . n D 4 294 GLY 294 295 295 GLY GLY A . n D 4 295 ILE 295 296 296 ILE ILE A . n D 4 296 ALA 296 297 297 ALA ALA A . n D 4 297 TYR 297 298 298 TYR TYR A . n D 4 298 TYR 298 299 299 TYR TYR A . n D 4 299 LEU 299 300 300 LEU LEU A . n D 4 300 SER 300 301 301 SER SER A . n D 4 301 THR 301 302 302 THR THR A . n D 4 302 PRO 302 303 303 PRO PRO A . n D 4 303 TYR 303 304 304 TYR TYR A . n D 4 304 GLY 304 305 305 GLY GLY A . n D 4 305 LEU 305 306 306 LEU LEU A . n D 4 306 SER 306 307 307 SER SER A . n D 4 307 SER 307 308 308 SER SER A . n D 4 308 VAL 308 309 309 VAL VAL A . n D 4 309 ILE 309 310 310 ILE ILE A . n D 4 310 SER 310 311 311 SER SER A . n D 4 311 ASP 311 312 312 ASP ASP A . n D 4 312 PRO 312 313 313 PRO PRO A . n D 4 313 ILE 313 314 314 ILE ILE A . n D 4 314 HIS 314 315 315 HIS HIS A . n D 4 315 ALA 315 316 316 ALA ALA A . n D 4 316 ILE 316 317 317 ILE ILE A . n D 4 317 VAL 317 318 318 VAL VAL A . n D 4 318 TYR 318 319 319 TYR TYR A . n D 4 319 MET 319 320 320 MET MET A . n D 4 320 ILE 320 321 321 ILE ILE A . n D 4 321 ALA 321 322 322 ALA ALA A . n D 4 322 MET 322 323 323 MET MET A . n D 4 323 ILE 323 324 324 ILE ILE A . n D 4 324 ILE 324 325 325 ILE ILE A . n D 4 325 THR 325 326 326 THR THR A . n D 4 326 CYS 326 327 327 CYS CYS A . n D 4 327 VAL 327 328 328 VAL VAL A . n D 4 328 MET 328 329 329 MET MET A . n D 4 329 PHE 329 330 330 PHE PHE A . n D 4 330 GLY 330 331 331 GLY GLY A . n D 4 331 ILE 331 332 332 ILE ILE A . n D 4 332 PHE 332 333 333 PHE PHE A . n D 4 333 TRP 333 334 334 TRP TRP A . n D 4 334 VAL 334 335 335 VAL VAL A . n D 4 335 GLU 335 336 336 GLU GLU A . n D 4 336 THR 336 337 337 THR THR A . n D 4 337 THR 337 338 338 THR THR A . n D 4 338 GLY 338 339 339 GLY GLY A . n D 4 339 LEU 339 340 340 LEU LEU A . n D 4 340 ASP 340 341 341 ASP ASP A . n D 4 341 PRO 341 342 342 PRO PRO A . n D 4 342 LYS 342 343 343 LYS LYS A . n D 4 343 SER 343 344 344 SER SER A . n D 4 344 MET 344 345 345 MET MET A . n D 4 345 ALA 345 346 346 ALA ALA A . n D 4 346 LYS 346 347 347 LYS LYS A . n D 4 347 ARG 347 348 348 ARG ARG A . n D 4 348 ILE 348 349 349 ILE ILE A . n D 4 349 GLY 349 350 350 GLY GLY A . n D 4 350 SER 350 351 351 SER SER A . n D 4 351 LEU 351 352 352 LEU LEU A . n D 4 352 GLY 352 353 353 GLY GLY A . n D 4 353 MET 353 354 354 MET MET A . n D 4 354 ALA 354 355 355 ALA ALA A . n D 4 355 ILE 355 356 356 ILE ILE A . n D 4 356 LYS 356 357 357 LYS LYS A . n D 4 357 GLY 357 358 358 GLY GLY A . n D 4 358 PHE 358 359 359 PHE PHE A . n D 4 359 ARG 359 360 360 ARG ARG A . n D 4 360 LYS 360 361 361 LYS LYS A . n D 4 361 SER 361 362 362 SER SER A . n D 4 362 ALA 362 363 363 ALA ALA A . n D 4 363 ILE 363 364 364 ILE ILE A . n D 4 364 GLU 364 365 365 GLU GLU A . n D 4 365 HIS 365 366 366 HIS HIS A . n D 4 366 ARG 366 367 367 ARG ARG A . n D 4 367 LEU 367 368 368 LEU LEU A . n D 4 368 LYS 368 369 369 LYS LYS A . n D 4 369 ARG 369 370 370 ARG ARG A . n D 4 370 TYR 370 371 371 TYR TYR A . n D 4 371 ILE 371 372 372 ILE ILE A . n D 4 372 PRO 372 373 373 PRO PRO A . n D 4 373 PRO 373 374 374 PRO PRO A . n D 4 374 LEU 374 375 375 LEU LEU A . n D 4 375 THR 375 376 376 THR THR A . n D 4 376 VAL 376 377 377 VAL VAL A . n D 4 377 MET 377 378 378 MET MET A . n D 4 378 SER 378 379 379 SER SER A . n D 4 379 SER 379 380 380 SER SER A . n D 4 380 ALA 380 381 381 ALA ALA A . n D 4 381 PHE 381 382 382 PHE PHE A . n D 4 382 VAL 382 383 383 VAL VAL A . n D 4 383 GLY 383 384 384 GLY GLY A . n D 4 384 PHE 384 385 385 PHE PHE A . n D 4 385 LEU 385 386 386 LEU LEU A . n D 4 386 ALA 386 387 387 ALA ALA A . n D 4 387 THR 387 388 388 THR THR A . n D 4 388 ILE 388 389 389 ILE ILE A . n D 4 389 ALA 389 390 390 ALA ALA A . n D 4 390 ASN 390 391 391 ASN ASN A . n D 4 391 PHE 391 392 392 PHE PHE A . n D 4 392 ILE 392 393 393 ILE ILE A . n D 4 393 GLY 393 394 394 GLY GLY A . n D 4 394 ALA 394 395 395 ALA ALA A . n D 4 395 LEU 395 396 396 LEU LEU A . n D 4 396 GLY 396 397 397 GLY GLY A . n D 4 397 GLY 397 398 398 GLY GLY A . n D 4 398 GLY 398 399 399 GLY GLY A . n D 4 399 THR 399 400 400 THR THR A . n D 4 400 GLY 400 401 401 GLY GLY A . n D 4 401 VAL 401 402 402 VAL VAL A . n D 4 402 LEU 402 403 403 LEU LEU A . n D 4 403 LEU 403 404 404 LEU LEU A . n D 4 404 THR 404 405 405 THR THR A . n D 4 405 VAL 405 406 406 VAL VAL A . n D 4 406 SER 406 407 407 SER SER A . n D 4 407 ILE 407 408 408 ILE ILE A . n D 4 408 VAL 408 409 409 VAL VAL A . n D 4 409 TYR 409 410 410 TYR TYR A . n D 4 410 ARG 410 411 411 ARG ARG A . n D 4 411 MET 411 412 412 MET MET A . n D 4 412 TYR 412 413 413 TYR TYR A . n D 4 413 GLU 413 414 414 GLU GLU A . n D 4 414 GLN 414 415 415 GLN GLN A . n D 4 415 LEU 415 416 416 LEU LEU A . n D 4 416 LEU 416 417 417 LEU LEU A . n D 4 417 ARG 417 418 418 ARG ARG A . n D 4 418 GLU 418 419 419 GLU GLU A . n D 4 419 LYS 419 420 420 LYS LYS A . n D 4 420 VAL 420 421 421 VAL VAL A . n D 4 421 SER 421 422 422 SER SER A . n D 4 422 GLU 422 423 423 GLU GLU A . n D 4 423 LEU 423 424 424 LEU LEU A . n D 4 424 HIS 424 425 425 HIS HIS A . n D 4 425 PRO 425 426 426 PRO PRO A . n D 4 426 ALA 426 427 427 ALA ALA A . n D 4 427 ILE 427 428 428 ILE ILE A . n D 4 428 ALA 428 429 429 ALA ALA A . n D 4 429 LYS 429 430 430 LYS LYS A . n D 4 430 LEU 430 431 431 LEU LEU A . n E 5 1 THR 1 2 2 THR THR B . n E 5 2 ASP 2 3 3 ASP ASP B . n E 5 3 PHE 3 4 4 PHE PHE B . n E 5 4 ASN 4 5 5 ASN ASN B . n E 5 5 GLN 5 6 6 GLN GLN B . n E 5 6 LYS 6 7 7 LYS LYS B . n E 5 7 ILE 7 8 8 ILE ILE B . n E 5 8 GLU 8 9 9 GLU GLU B . n E 5 9 GLN 9 10 10 GLN GLN B . n E 5 10 LEU 10 11 11 LEU LEU B . n E 5 11 LYS 11 12 12 LYS LYS B . n E 5 12 GLU 12 13 13 GLU GLU B . n E 5 13 PHE 13 14 14 PHE PHE B . n E 5 14 ILE 14 15 15 ILE ILE B . n E 5 15 GLU 15 16 16 GLU GLU B . n E 5 16 GLU 16 17 17 GLU GLU B . n E 5 17 CYS 17 18 18 CYS CYS B . n E 5 18 ARG 18 19 19 ARG ARG B . n E 5 19 ARG 19 20 20 ARG ARG B . n E 5 20 VAL 20 21 21 VAL VAL B . n E 5 21 TRP 21 22 22 TRP TRP B . n E 5 22 LEU 22 23 23 LEU LEU B . n E 5 23 VAL 23 24 24 VAL VAL B . n E 5 24 LEU 24 25 25 LEU LEU B . n E 5 25 LYS 25 26 26 LYS LYS B . n E 5 26 LYS 26 27 27 LYS LYS B . n E 5 27 PRO 27 28 28 PRO PRO B . n E 5 28 THR 28 29 29 THR THR B . n E 5 29 LYS 29 30 30 LYS LYS B . n E 5 30 ASP 30 31 31 ASP ASP B . n E 5 31 GLU 31 32 32 GLU GLU B . n E 5 32 TYR 32 33 33 TYR TYR B . n E 5 33 LEU 33 34 34 LEU LEU B . n E 5 34 ALA 34 35 35 ALA ALA B . n E 5 35 VAL 35 36 36 VAL VAL B . n E 5 36 ALA 36 37 37 ALA ALA B . n E 5 37 LYS 37 38 38 LYS LYS B . n E 5 38 VAL 38 39 39 VAL VAL B . n E 5 39 THR 39 40 40 THR THR B . n E 5 40 ALA 40 41 41 ALA ALA B . n E 5 41 LEU 41 42 42 LEU LEU B . n E 5 42 GLY 42 43 43 GLY GLY B . n E 5 43 ILE 43 44 44 ILE ILE B . n E 5 44 SER 44 45 45 SER SER B . n E 5 45 LEU 45 46 46 LEU LEU B . n E 5 46 LEU 46 47 47 LEU LEU B . n E 5 47 GLY 47 48 48 GLY GLY B . n E 5 48 ILE 48 49 49 ILE ILE B . n E 5 49 ILE 49 50 50 ILE ILE B . n E 5 50 GLY 50 51 51 GLY GLY B . n E 5 51 TYR 51 52 52 TYR TYR B . n E 5 52 ILE 52 53 53 ILE ILE B . n E 5 53 ILE 53 54 54 ILE ILE B . n E 5 54 HIS 54 55 55 HIS HIS B . n E 5 55 VAL 55 56 56 VAL VAL B . n E 5 56 PRO 56 57 57 PRO PRO B . n E 5 57 ALA 57 58 58 ALA ALA B . n E 5 58 THR 58 59 59 THR THR B . n E 5 59 TYR 59 60 60 TYR TYR B . n E 5 60 ILE 60 61 61 ILE ILE B . n E 5 61 LYS 61 62 62 LYS LYS B . n E 5 62 GLY 62 63 63 GLY GLY B . n E 5 63 ILE 63 64 64 ILE ILE B . n E 5 64 LEU 64 65 65 LEU LEU B . n E 5 65 LYS 65 66 66 LYS LYS B . n F 6 1 GLU 1 21 21 GLU GLU C . n F 6 2 THR 2 22 22 THR THR C . n F 6 3 PHE 3 23 23 PHE PHE C . n F 6 4 SER 4 24 24 SER SER C . n F 6 5 LYS 5 25 25 LYS LYS C . n F 6 6 ILE 6 26 26 ILE ILE C . n F 6 7 ARG 7 27 27 ARG ARG C . n F 6 8 VAL 8 28 28 VAL VAL C . n F 6 9 LYS 9 29 29 LYS LYS C . n F 6 10 PRO 10 30 30 PRO PRO C . n F 6 11 GLU 11 31 31 GLU GLU C . n F 6 12 HIS 12 32 32 HIS HIS C . n F 6 13 VAL 13 33 33 VAL VAL C . n F 6 14 ILE 14 34 34 ILE ILE C . n F 6 15 GLY 15 35 35 GLY GLY C . n F 6 16 VAL 16 36 36 VAL VAL C . n F 6 17 THR 17 37 37 THR THR C . n F 6 18 VAL 18 38 38 VAL VAL C . n F 6 19 ALA 19 39 39 ALA ALA C . n F 6 20 PHE 20 40 40 PHE PHE C . n F 6 21 VAL 21 41 41 VAL VAL C . n F 6 22 ILE 22 42 42 ILE ILE C . n F 6 23 ILE 23 43 43 ILE ILE C . n F 6 24 GLU 24 44 44 GLU GLU C . n F 6 25 ALA 25 45 45 ALA ALA C . n F 6 26 ILE 26 46 46 ILE ILE C . n F 6 27 LEU 27 47 47 LEU LEU C . n F 6 28 THR 28 48 48 THR THR C . n F 6 29 TYR 29 49 49 TYR TYR C . n F 6 30 GLY 30 50 50 GLY GLY C . n F 6 31 ARG 31 51 51 ARG ARG C . n F 6 32 PHE 32 52 52 PHE PHE C . n # _cell.entry_id 3DKN _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DKN _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3DKN _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4072 _refine_hist.pdbx_number_atoms_nucleic_acid 1482 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 5554 _refine_hist.d_res_high . _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 3DKN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3DKN _struct.title 'Sec61 in the Canine ribosome-channel complex from the endoplasmic reticulum' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DKN _struct_keywords.pdbx_keywords 'protein transport/RNA' _struct_keywords.text 'Ribosome-channel complex, co-translational translocation, endoplasmic reticulum, protein transport-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3DKN 3DKN 1 53 CGUGCCAAGCUGCGAUAAGC ? 2 PDB 3DKN 3DKN 2 80 AGCCGCACGGAGGCGAA ? 3 PDB 3DKN 3DKN 3 1415 GGGUUCCUCAGCACUGCUGAUCAGCUGAGGGU ? 4 PDB 3DKN 3DKN 4 2 ;KKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPAIFEFWQTITASRIGTLITLGIGPIVTA GIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIV SKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMI AMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTG VLLTVSIVYRMYEQLLREKVSELHPAIAKL ; ? 5 PDB 3DKN 3DKN 5 2 TDFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGILK ? 6 PDB 3DKN 3DKN 6 21 ETFSKIRVKPEHVIGVTVAFVIIEAILTYGRF ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DKN D 1 ? 20 ? 3DKN 53 ? 72 ? 53 72 2 2 3DKN E 1 ? 17 ? 3DKN 80 ? 96 ? 80 96 3 3 3DKN F 1 ? 32 ? 3DKN 1415 ? 1446 ? 1415 1446 4 4 3DKN A 1 ? 430 ? 3DKN 2 ? 431 ? 2 431 5 5 3DKN B 1 ? 65 ? 3DKN 2 ? 66 ? 2 66 6 6 3DKN C 1 ? 32 ? 3DKN 21 ? 52 ? 21 52 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU D 3 ? ILE D 10 ? LEU A 4 ILE A 11 1 ? 8 HELX_P HELX_P2 2 THR D 21 ? ILE D 42 ? THR A 22 ILE A 43 1 ? 22 HELX_P HELX_P3 3 TRP D 58 ? ALA D 63 ? TRP A 59 ALA A 64 1 ? 6 HELX_P HELX_P4 4 ILE D 74 ? VAL D 88 ? ILE A 75 VAL A 89 1 ? 15 HELX_P HELX_P5 5 ILE D 99 ? ALA D 128 ? ILE A 100 ALA A 129 1 ? 30 HELX_P HELX_P6 6 THR D 135 ? GLY D 164 ? THR A 136 GLY A 165 1 ? 30 HELX_P HELX_P7 7 SER D 167 ? GLY D 187 ? SER A 168 GLY A 188 1 ? 21 HELX_P HELX_P8 8 GLY D 190 ? GLY D 202 ? GLY A 191 GLY A 203 1 ? 13 HELX_P HELX_P9 9 ASN D 205 ? MET D 228 ? ASN A 206 MET A 229 1 ? 24 HELX_P HELX_P10 10 VAL D 251 ? VAL D 253 ? VAL A 252 VAL A 254 5 ? 3 HELX_P HELX_P11 11 SER D 254 ? LEU D 275 ? SER A 255 LEU A 276 1 ? 22 HELX_P HELX_P12 12 ASP D 293 ? LEU D 299 ? ASP A 294 LEU A 300 1 ? 7 HELX_P HELX_P13 13 ASP D 311 ? PHE D 332 ? ASP A 312 PHE A 333 1 ? 22 HELX_P HELX_P14 14 PRO D 341 ? ILE D 348 ? PRO A 342 ILE A 349 1 ? 8 HELX_P HELX_P15 15 ALA D 362 ? TYR D 370 ? ALA A 363 TYR A 371 1 ? 9 HELX_P HELX_P16 16 THR D 375 ? GLY D 393 ? THR A 376 GLY A 394 1 ? 19 HELX_P HELX_P17 17 GLY D 397 ? GLU D 422 ? GLY A 398 GLU A 423 1 ? 26 HELX_P HELX_P18 18 THR E 1 ? TRP E 21 ? THR B 2 TRP B 22 1 ? 21 HELX_P HELX_P19 19 THR E 28 ? LEU E 64 ? THR B 29 LEU B 65 1 ? 37 HELX_P HELX_P20 20 PRO F 10 ? THR F 28 ? PRO C 30 THR C 48 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 14 N1 ? ? D C 53 D G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 14 O6 ? ? D C 53 D G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 14 N2 ? ? D C 53 D G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 13 N3 ? ? D G 54 D C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 13 O2 ? ? D G 54 D C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 13 N4 ? ? D G 54 D C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 2 N2 ? ? ? 1_555 A A 17 N3 ? ? D G 54 D A 69 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog8 hydrog ? ? A U 3 N3 ? ? ? 1_555 A G 12 O6 ? ? D U 55 D G 64 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A U 3 O2 ? ? ? 1_555 A G 12 N1 ? ? D U 55 D G 64 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 10 N4 ? ? D G 56 D C 62 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog11 hydrog ? ? A G 4 N1 ? ? ? 1_555 B G 5 O6 ? ? D G 56 E G 84 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A G 4 N2 ? ? ? 1_555 B G 5 N7 ? ? D G 56 E G 84 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 10 N1 ? ? D C 57 E G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 10 O6 ? ? D C 57 E G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 10 N2 ? ? D C 57 E G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 9 N1 ? ? D C 58 E G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 9 O6 ? ? D C 58 E G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 9 N2 ? ? D C 58 E G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 7 N3 ? ? ? 1_555 A A 8 N6 ? ? D A 59 D A 60 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog20 hydrog ? ? A A 7 N1 ? ? ? 1_555 B C 6 N4 ? ? D A 59 E C 85 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog21 hydrog ? ? A A 8 N1 ? ? ? 1_555 B A 7 N6 ? ? D A 60 E A 86 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog22 hydrog ? ? A A 8 N6 ? ? ? 1_555 B A 7 N1 ? ? D A 60 E A 86 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog23 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 6 N3 ? ? D G 61 E C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 6 O2 ? ? D G 61 E C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 6 N4 ? ? D G 61 E C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 5 N1 ? ? D C 62 E G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 5 O6 ? ? D C 62 E G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 5 N2 ? ? D C 62 E G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 18 N7 ? ? D U 63 D A 70 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog30 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 18 N6 ? ? D U 63 D A 70 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog31 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 15 N1 ? ? D G 66 D A 67 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog32 hydrog ? ? B A 1 N3 ? ? ? 1_555 B G 15 N2 ? ? E A 80 E G 94 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog33 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 14 N3 ? ? E G 81 E C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 14 O2 ? ? E G 81 E C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 14 N4 ? ? E G 81 E C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 13 N1 ? ? E C 82 E G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 13 O6 ? ? E C 82 E G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 13 N2 ? ? E C 82 E G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B C 4 N3 ? ? ? 1_555 B G 12 N1 ? ? E C 83 E G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B C 4 N4 ? ? ? 1_555 B G 12 O6 ? ? E C 83 E G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B C 4 O2 ? ? ? 1_555 B G 12 N2 ? ? E C 83 E G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C U 4 N3 ? ? ? 1_555 C U 32 O4 ? ? F U 1418 F U 1446 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog43 hydrog ? ? C C 6 N3 ? ? ? 1_555 C G 30 N1 ? ? F C 1420 F G 1444 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C C 6 N4 ? ? ? 1_555 C G 30 O6 ? ? F C 1420 F G 1444 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C C 6 O2 ? ? ? 1_555 C G 30 N2 ? ? F C 1420 F G 1444 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C C 7 N3 ? ? ? 1_555 C G 29 N1 ? ? F C 1421 F G 1443 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C C 7 N4 ? ? ? 1_555 C G 29 O6 ? ? F C 1421 F G 1443 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 7 O2 ? ? ? 1_555 C G 29 N2 ? ? F C 1421 F G 1443 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C U 8 N3 ? ? ? 1_555 C A 28 N1 ? ? F U 1422 F A 1442 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C U 8 O4 ? ? ? 1_555 C A 28 N6 ? ? F U 1422 F A 1442 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C C 9 N3 ? ? ? 1_555 C G 27 N1 ? ? F C 1423 F G 1441 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C C 9 N4 ? ? ? 1_555 C G 27 O6 ? ? F C 1423 F G 1441 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C C 9 O2 ? ? ? 1_555 C G 27 N2 ? ? F C 1423 F G 1441 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C A 10 N1 ? ? ? 1_555 C U 26 N3 ? ? F A 1424 F U 1440 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C A 10 N6 ? ? ? 1_555 C U 26 O4 ? ? F A 1424 F U 1440 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C G 11 N1 ? ? ? 1_555 C C 25 N3 ? ? F G 1425 F C 1439 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C G 11 N2 ? ? ? 1_555 C C 25 O2 ? ? F G 1425 F C 1439 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C G 11 O6 ? ? ? 1_555 C C 25 N4 ? ? F G 1425 F C 1439 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C C 12 N3 ? ? ? 1_555 C A 23 N6 ? ? F C 1426 F A 1437 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog60 hydrog ? ? C C 12 N4 ? ? ? 1_555 C A 23 N7 ? ? F C 1426 F A 1437 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog61 hydrog ? ? C C 14 N4 ? ? ? 1_555 C C 25 O2 ? ? F C 1428 F C 1439 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog62 hydrog ? ? C U 15 N3 ? ? ? 1_555 C A 23 N1 ? ? F U 1429 F A 1437 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C U 15 O4 ? ? ? 1_555 C A 23 N6 ? ? F U 1429 F A 1437 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 16 N1 ? ? ? 1_555 C C 22 N3 ? ? F G 1430 F C 1436 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 16 N2 ? ? ? 1_555 C C 22 O2 ? ? F G 1430 F C 1436 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C G 16 O6 ? ? ? 1_555 C C 22 N4 ? ? F G 1430 F C 1436 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 232 D . ? ILE 233 A PRO 233 D ? PRO 234 A 1 -0.42 2 HIS 236 D . ? HIS 237 A GLY 237 D ? GLY 238 A 1 -0.21 3 GLY 237 D . ? GLY 238 A ARG 238 D ? ARG 239 A 1 0.32 4 ARG 238 D . ? ARG 239 A ILE 239 D ? ILE 240 A 1 -0.52 5 LYS 240 D . ? LYS 241 A GLY 241 D ? GLY 242 A 1 0.14 6 LYS 245 D . ? LYS 246 A TYR 246 D ? TYR 247 A 1 0.01 7 GLU 335 D . ? GLU 336 A THR 336 D ? THR 337 A 1 -0.05 8 ILE 355 D . ? ILE 356 A LYS 356 D ? LYS 357 A 1 -0.20 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLY _pdbx_validate_close_contact.auth_seq_id_1 245 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 LYS _pdbx_validate_close_contact.auth_seq_id_2 246 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.71 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A TYR 247 ? ? N A PRO 248 ? ? CD A PRO 248 ? ? 114.56 128.40 -13.84 2.10 Y 2 1 C A THR 302 ? ? N A PRO 303 ? ? CA A PRO 303 ? ? 130.06 119.30 10.76 1.50 Y 3 1 C A ASP 341 ? ? N A PRO 342 ? ? CD A PRO 342 ? ? 110.25 128.40 -18.15 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 4 ? ? -64.80 28.87 2 1 PRO A 12 ? ? -47.07 165.20 3 1 THR A 47 ? ? -162.16 115.98 4 1 ALA A 50 ? ? -57.61 -4.04 5 1 PRO A 53 ? ? -63.54 78.28 6 1 ALA A 54 ? ? 52.64 -133.93 7 1 PHE A 58 ? ? -172.17 -31.67 8 1 GLN A 60 ? ? -44.13 -74.67 9 1 THR A 61 ? ? -26.58 -90.64 10 1 ALA A 64 ? ? 18.13 69.46 11 1 SER A 65 ? ? -133.83 -99.34 12 1 ARG A 66 ? ? 142.81 110.32 13 1 LEU A 70 ? ? -57.96 -0.98 14 1 THR A 72 ? ? -48.79 -16.03 15 1 LEU A 88 ? ? -69.68 -79.48 16 1 VAL A 89 ? ? -47.90 -1.38 17 1 SER A 91 ? ? -79.99 29.07 18 1 ILE A 93 ? ? -31.26 -33.50 19 1 GLN A 95 ? ? -32.26 128.85 20 1 SER A 99 ? ? -2.48 -68.30 21 1 GLU A 102 ? ? -70.22 -82.34 22 1 GLN A 108 ? ? -66.55 -85.74 23 1 LEU A 135 ? ? -86.50 43.28 24 1 THR A 136 ? ? -60.67 95.22 25 1 PRO A 137 ? ? -29.37 -39.33 26 1 ILE A 145 ? ? -46.23 -76.01 27 1 ILE A 147 ? ? -38.03 -77.68 28 1 TYR A 164 ? ? -143.48 -7.85 29 1 ILE A 170 ? ? -40.09 -74.59 30 1 LEU A 172 ? ? -51.79 -80.75 31 1 PHE A 173 ? ? -23.15 -55.46 32 1 PRO A 189 ? ? -56.56 -81.03 33 1 GLU A 190 ? ? -74.33 29.75 34 1 LYS A 195 ? ? -39.50 -32.22 35 1 PRO A 205 ? ? -23.52 103.30 36 1 ALA A 211 ? ? -41.71 -75.18 37 1 MET A 229 ? ? -18.47 132.43 38 1 VAL A 231 ? ? -89.73 -140.33 39 1 GLU A 232 ? ? -173.98 144.22 40 1 ILE A 233 ? ? -35.86 159.89 41 1 PRO A 234 ? ? 110.95 -8.54 42 1 LEU A 235 ? ? 174.75 -39.86 43 1 ALA A 236 ? ? 133.94 -71.61 44 1 HIS A 237 ? ? -17.34 80.92 45 1 ARG A 239 ? ? -144.15 33.98 46 1 ILE A 240 ? ? 124.69 -55.53 47 1 LYS A 241 ? ? 135.96 -137.46 48 1 ALA A 243 ? ? -67.87 -119.38 49 1 VAL A 244 ? ? 29.31 -124.18 50 1 LYS A 246 ? ? -29.77 -151.36 51 1 TYR A 247 ? ? 125.02 113.48 52 1 PRO A 248 ? ? -132.88 -115.56 53 1 ILE A 249 ? ? 139.31 91.76 54 1 LYS A 250 ? ? -32.78 162.25 55 1 PHE A 251 ? ? -158.66 -114.85 56 1 TYR A 253 ? ? -59.20 1.22 57 1 SER A 255 ? ? -83.39 48.41 58 1 ASN A 256 ? ? -81.45 -79.04 59 1 TYR A 277 ? ? -137.96 -69.81 60 1 ARG A 278 ? ? -79.93 29.63 61 1 MET A 279 ? ? -158.75 36.35 62 1 PRO A 282 ? ? -68.62 58.04 63 1 TYR A 287 ? ? -75.20 -90.55 64 1 GLU A 288 ? ? 66.73 126.01 65 1 ASP A 294 ? ? 173.59 152.89 66 1 TYR A 304 ? ? -57.41 -171.98 67 1 LEU A 306 ? ? -130.33 -67.24 68 1 SER A 311 ? ? -54.56 35.62 69 1 ASP A 312 ? ? -177.26 42.02 70 1 PRO A 313 ? ? -26.16 -67.50 71 1 THR A 337 ? ? 161.28 -117.96 72 1 THR A 338 ? ? -170.37 62.60 73 1 LEU A 340 ? ? 21.70 97.42 74 1 PRO A 342 ? ? -99.62 -61.15 75 1 LYS A 343 ? ? -37.76 -92.23 76 1 MET A 345 ? ? -34.07 -81.30 77 1 LYS A 347 ? ? -25.89 -57.04 78 1 ARG A 348 ? ? -77.85 -76.85 79 1 ILE A 349 ? ? 14.92 -128.23 80 1 SER A 351 ? ? -170.14 -109.13 81 1 LEU A 352 ? ? 16.89 50.02 82 1 MET A 354 ? ? 157.59 148.54 83 1 ILE A 356 ? ? 167.99 24.84 84 1 PHE A 359 ? ? -173.10 -139.36 85 1 LYS A 361 ? ? 172.25 -161.52 86 1 SER A 362 ? ? -48.99 -179.73 87 1 ALA A 363 ? ? 71.29 -47.12 88 1 TYR A 371 ? ? -84.11 32.75 89 1 LEU A 375 ? ? -60.90 -119.23 90 1 THR A 376 ? ? 19.16 -82.76 91 1 SER A 379 ? ? -26.27 -54.99 92 1 PHE A 382 ? ? -62.37 -73.84 93 1 VAL A 383 ? ? -31.72 -71.43 94 1 LEU A 424 ? ? -125.43 -68.30 95 1 PRO A 426 ? ? -64.37 70.81 96 1 ALA A 427 ? ? -171.42 -60.55 97 1 ILE A 428 ? ? -60.69 55.78 98 1 LYS A 430 ? ? -149.26 -4.86 99 1 ARG B 19 ? ? -60.99 -78.65 100 1 ARG B 20 ? ? -37.62 -25.58 101 1 TRP B 22 ? ? -79.00 -145.39 102 1 VAL B 24 ? ? -135.32 -52.84 103 1 LEU B 25 ? ? -13.15 134.42 104 1 LYS B 30 ? ? -22.23 -42.79 105 1 ASP B 31 ? ? -62.59 -72.35 106 1 VAL B 36 ? ? -57.03 -78.60 107 1 ALA B 37 ? ? -35.05 -24.27 108 1 HIS B 55 ? ? -54.82 -86.68 109 1 VAL B 56 ? ? -17.09 -67.85 110 1 ILE B 61 ? ? -79.29 -72.02 111 1 LYS B 62 ? ? -36.72 -36.92 112 1 THR C 48 ? ? -96.63 -72.37 113 1 TYR C 49 ? ? -66.23 -179.46 114 1 ARG C 51 ? ? -31.29 135.35 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CB ? A ILE 233 ? 'WRONG HAND' . 2 1 CA ? A PRO 234 ? 'WRONG HAND' . 3 1 CA ? A LEU 235 ? 'WRONG HAND' . 4 1 CA ? A ALA 236 ? 'WRONG HAND' . 5 1 CA ? A HIS 237 ? 'WRONG HAND' . 6 1 CA ? A ILE 240 ? 'WRONG HAND' . 7 1 CA ? A LYS 241 ? 'WRONG HAND' . 8 1 CA ? A TYR 247 ? 'WRONG HAND' . 9 1 CA ? A ILE 249 ? 'WRONG HAND' . 10 1 CA ? A PHE 251 ? 'WRONG HAND' . 11 1 CA ? A THR 337 ? 'WRONG HAND' . 12 1 CA ? A ALA 355 ? 'WRONG HAND' . 13 1 CA ? A ARG 360 ? 'WRONG HAND' . 14 1 CA ? A LYS 361 ? 'WRONG HAND' . 15 1 CA ? A SER 362 ? 'WRONG HAND' . # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G F 1417 ? ? 0.068 'SIDE CHAIN' 2 1 G F 1430 ? ? 0.058 'SIDE CHAIN' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 3DKN _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details 'METHOD--Rigid body, then local flexible fitting' _em_3d_fitting.method ? # loop_ _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.details _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.chain_id _em_3d_fitting_list.chain_residue_range _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_3d_fitting_list.accession_code 1 1 1RHZ ? ? 1 ? ? ? PDB 'experimental model' 1RHZ 1 2 1S72 ? ? 2 ? ? ? PDB 'experimental model' 1S72 # _em_3d_reconstruction.entry_id 3DKN _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 79000 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'projection matching with EMAN' _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size 2.73 _em_3d_reconstruction.resolution 8.7 _em_3d_reconstruction.magnification_calibration 'vermiculite crystals' _em_3d_reconstruction.details '8.7 angstrom resolution for the 80S ribosome, 11.1 angstrom resolution for the Sec61 region of the channel density' _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '30mM Hepes 50mM KAc, 10mM Mg acetate and 1.5% digitonin.' _em_buffer.pH 7.5 _em_buffer.details '30mM Hepes 50mM KAc, 10mM Mg acetate and 1.5% digitonin.' # loop_ _em_entity_assembly.id _em_entity_assembly.name _em_entity_assembly.type _em_entity_assembly.parent_id _em_entity_assembly.synonym _em_entity_assembly.details _em_entity_assembly.oligomeric_details 1 'Ribosome-channel complexes' RIBOSOME 0 ? ? ? 2 'Sec61 channel' ? 1 ? ? ? 3 'large subunit' ? 1 ? ? ? # _em_imaging.entry_id 3DKN _em_imaging.id 1 _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.date 2001-07-27 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.specimen_id 1 _em_imaging.temperature 93 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 3000 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2 _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification 51000 _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.citation_id ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'continuous thin carbon on 400 mesh copper grids' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 3DKN _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'Home-made plunger' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.specimen_id 1 _em_vitrification.temp ? _em_vitrification.time_resolved_state ? _em_vitrification.chamber_temperature ? # _em_experiment.entry_id 3DKN _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 3DKN _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 ILE N N N N 268 ILE CA C N S 269 ILE C C N N 270 ILE O O N N 271 ILE CB C N S 272 ILE CG1 C N N 273 ILE CG2 C N N 274 ILE CD1 C N N 275 ILE OXT O N N 276 ILE H H N N 277 ILE H2 H N N 278 ILE HA H N N 279 ILE HB H N N 280 ILE HG12 H N N 281 ILE HG13 H N N 282 ILE HG21 H N N 283 ILE HG22 H N N 284 ILE HG23 H N N 285 ILE HD11 H N N 286 ILE HD12 H N N 287 ILE HD13 H N N 288 ILE HXT H N N 289 LEU N N N N 290 LEU CA C N S 291 LEU C C N N 292 LEU O O N N 293 LEU CB C N N 294 LEU CG C N N 295 LEU CD1 C N N 296 LEU CD2 C N N 297 LEU OXT O N N 298 LEU H H N N 299 LEU H2 H N N 300 LEU HA H N N 301 LEU HB2 H N N 302 LEU HB3 H N N 303 LEU HG H N N 304 LEU HD11 H N N 305 LEU HD12 H N N 306 LEU HD13 H N N 307 LEU HD21 H N N 308 LEU HD22 H N N 309 LEU HD23 H N N 310 LEU HXT H N N 311 LYS N N N N 312 LYS CA C N S 313 LYS C C N N 314 LYS O O N N 315 LYS CB C N N 316 LYS CG C N N 317 LYS CD C N N 318 LYS CE C N N 319 LYS NZ N N N 320 LYS OXT O N N 321 LYS H H N N 322 LYS H2 H N N 323 LYS HA H N N 324 LYS HB2 H N N 325 LYS HB3 H N N 326 LYS HG2 H N N 327 LYS HG3 H N N 328 LYS HD2 H N N 329 LYS HD3 H N N 330 LYS HE2 H N N 331 LYS HE3 H N N 332 LYS HZ1 H N N 333 LYS HZ2 H N N 334 LYS HZ3 H N N 335 LYS HXT H N N 336 MET N N N N 337 MET CA C N S 338 MET C C N N 339 MET O O N N 340 MET CB C N N 341 MET CG C N N 342 MET SD S N N 343 MET CE C N N 344 MET OXT O N N 345 MET H H N N 346 MET H2 H N N 347 MET HA H N N 348 MET HB2 H N N 349 MET HB3 H N N 350 MET HG2 H N N 351 MET HG3 H N N 352 MET HE1 H N N 353 MET HE2 H N N 354 MET HE3 H N N 355 MET HXT H N N 356 PHE N N N N 357 PHE CA C N S 358 PHE C C N N 359 PHE O O N N 360 PHE CB C N N 361 PHE CG C Y N 362 PHE CD1 C Y N 363 PHE CD2 C Y N 364 PHE CE1 C Y N 365 PHE CE2 C Y N 366 PHE CZ C Y N 367 PHE OXT O N N 368 PHE H H N N 369 PHE H2 H N N 370 PHE HA H N N 371 PHE HB2 H N N 372 PHE HB3 H N N 373 PHE HD1 H N N 374 PHE HD2 H N N 375 PHE HE1 H N N 376 PHE HE2 H N N 377 PHE HZ H N N 378 PHE HXT H N N 379 PRO N N N N 380 PRO CA C N S 381 PRO C C N N 382 PRO O O N N 383 PRO CB C N N 384 PRO CG C N N 385 PRO CD C N N 386 PRO OXT O N N 387 PRO H H N N 388 PRO HA H N N 389 PRO HB2 H N N 390 PRO HB3 H N N 391 PRO HG2 H N N 392 PRO HG3 H N N 393 PRO HD2 H N N 394 PRO HD3 H N N 395 PRO HXT H N N 396 SER N N N N 397 SER CA C N S 398 SER C C N N 399 SER O O N N 400 SER CB C N N 401 SER OG O N N 402 SER OXT O N N 403 SER H H N N 404 SER H2 H N N 405 SER HA H N N 406 SER HB2 H N N 407 SER HB3 H N N 408 SER HG H N N 409 SER HXT H N N 410 THR N N N N 411 THR CA C N S 412 THR C C N N 413 THR O O N N 414 THR CB C N R 415 THR OG1 O N N 416 THR CG2 C N N 417 THR OXT O N N 418 THR H H N N 419 THR H2 H N N 420 THR HA H N N 421 THR HB H N N 422 THR HG1 H N N 423 THR HG21 H N N 424 THR HG22 H N N 425 THR HG23 H N N 426 THR HXT H N N 427 TRP N N N N 428 TRP CA C N S 429 TRP C C N N 430 TRP O O N N 431 TRP CB C N N 432 TRP CG C Y N 433 TRP CD1 C Y N 434 TRP CD2 C Y N 435 TRP NE1 N Y N 436 TRP CE2 C Y N 437 TRP CE3 C Y N 438 TRP CZ2 C Y N 439 TRP CZ3 C Y N 440 TRP CH2 C Y N 441 TRP OXT O N N 442 TRP H H N N 443 TRP H2 H N N 444 TRP HA H N N 445 TRP HB2 H N N 446 TRP HB3 H N N 447 TRP HD1 H N N 448 TRP HE1 H N N 449 TRP HE3 H N N 450 TRP HZ2 H N N 451 TRP HZ3 H N N 452 TRP HH2 H N N 453 TRP HXT H N N 454 TYR N N N N 455 TYR CA C N S 456 TYR C C N N 457 TYR O O N N 458 TYR CB C N N 459 TYR CG C Y N 460 TYR CD1 C Y N 461 TYR CD2 C Y N 462 TYR CE1 C Y N 463 TYR CE2 C Y N 464 TYR CZ C Y N 465 TYR OH O N N 466 TYR OXT O N N 467 TYR H H N N 468 TYR H2 H N N 469 TYR HA H N N 470 TYR HB2 H N N 471 TYR HB3 H N N 472 TYR HD1 H N N 473 TYR HD2 H N N 474 TYR HE1 H N N 475 TYR HE2 H N N 476 TYR HH H N N 477 TYR HXT H N N 478 U OP3 O N N 479 U P P N N 480 U OP1 O N N 481 U OP2 O N N 482 U "O5'" O N N 483 U "C5'" C N N 484 U "C4'" C N R 485 U "O4'" O N N 486 U "C3'" C N S 487 U "O3'" O N N 488 U "C2'" C N R 489 U "O2'" O N N 490 U "C1'" C N R 491 U N1 N N N 492 U C2 C N N 493 U O2 O N N 494 U N3 N N N 495 U C4 C N N 496 U O4 O N N 497 U C5 C N N 498 U C6 C N N 499 U HOP3 H N N 500 U HOP2 H N N 501 U "H5'" H N N 502 U "H5''" H N N 503 U "H4'" H N N 504 U "H3'" H N N 505 U "HO3'" H N N 506 U "H2'" H N N 507 U "HO2'" H N N 508 U "H1'" H N N 509 U H3 H N N 510 U H5 H N N 511 U H6 H N N 512 VAL N N N N 513 VAL CA C N S 514 VAL C C N N 515 VAL O O N N 516 VAL CB C N N 517 VAL CG1 C N N 518 VAL CG2 C N N 519 VAL OXT O N N 520 VAL H H N N 521 VAL H2 H N N 522 VAL HA H N N 523 VAL HB H N N 524 VAL HG11 H N N 525 VAL HG12 H N N 526 VAL HG13 H N N 527 VAL HG21 H N N 528 VAL HG22 H N N 529 VAL HG23 H N N 530 VAL HXT H N N 531 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 ILE N CA sing N N 265 ILE N H sing N N 266 ILE N H2 sing N N 267 ILE CA C sing N N 268 ILE CA CB sing N N 269 ILE CA HA sing N N 270 ILE C O doub N N 271 ILE C OXT sing N N 272 ILE CB CG1 sing N N 273 ILE CB CG2 sing N N 274 ILE CB HB sing N N 275 ILE CG1 CD1 sing N N 276 ILE CG1 HG12 sing N N 277 ILE CG1 HG13 sing N N 278 ILE CG2 HG21 sing N N 279 ILE CG2 HG22 sing N N 280 ILE CG2 HG23 sing N N 281 ILE CD1 HD11 sing N N 282 ILE CD1 HD12 sing N N 283 ILE CD1 HD13 sing N N 284 ILE OXT HXT sing N N 285 LEU N CA sing N N 286 LEU N H sing N N 287 LEU N H2 sing N N 288 LEU CA C sing N N 289 LEU CA CB sing N N 290 LEU CA HA sing N N 291 LEU C O doub N N 292 LEU C OXT sing N N 293 LEU CB CG sing N N 294 LEU CB HB2 sing N N 295 LEU CB HB3 sing N N 296 LEU CG CD1 sing N N 297 LEU CG CD2 sing N N 298 LEU CG HG sing N N 299 LEU CD1 HD11 sing N N 300 LEU CD1 HD12 sing N N 301 LEU CD1 HD13 sing N N 302 LEU CD2 HD21 sing N N 303 LEU CD2 HD22 sing N N 304 LEU CD2 HD23 sing N N 305 LEU OXT HXT sing N N 306 LYS N CA sing N N 307 LYS N H sing N N 308 LYS N H2 sing N N 309 LYS CA C sing N N 310 LYS CA CB sing N N 311 LYS CA HA sing N N 312 LYS C O doub N N 313 LYS C OXT sing N N 314 LYS CB CG sing N N 315 LYS CB HB2 sing N N 316 LYS CB HB3 sing N N 317 LYS CG CD sing N N 318 LYS CG HG2 sing N N 319 LYS CG HG3 sing N N 320 LYS CD CE sing N N 321 LYS CD HD2 sing N N 322 LYS CD HD3 sing N N 323 LYS CE NZ sing N N 324 LYS CE HE2 sing N N 325 LYS CE HE3 sing N N 326 LYS NZ HZ1 sing N N 327 LYS NZ HZ2 sing N N 328 LYS NZ HZ3 sing N N 329 LYS OXT HXT sing N N 330 MET N CA sing N N 331 MET N H sing N N 332 MET N H2 sing N N 333 MET CA C sing N N 334 MET CA CB sing N N 335 MET CA HA sing N N 336 MET C O doub N N 337 MET C OXT sing N N 338 MET CB CG sing N N 339 MET CB HB2 sing N N 340 MET CB HB3 sing N N 341 MET CG SD sing N N 342 MET CG HG2 sing N N 343 MET CG HG3 sing N N 344 MET SD CE sing N N 345 MET CE HE1 sing N N 346 MET CE HE2 sing N N 347 MET CE HE3 sing N N 348 MET OXT HXT sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TRP N CA sing N N 419 TRP N H sing N N 420 TRP N H2 sing N N 421 TRP CA C sing N N 422 TRP CA CB sing N N 423 TRP CA HA sing N N 424 TRP C O doub N N 425 TRP C OXT sing N N 426 TRP CB CG sing N N 427 TRP CB HB2 sing N N 428 TRP CB HB3 sing N N 429 TRP CG CD1 doub Y N 430 TRP CG CD2 sing Y N 431 TRP CD1 NE1 sing Y N 432 TRP CD1 HD1 sing N N 433 TRP CD2 CE2 doub Y N 434 TRP CD2 CE3 sing Y N 435 TRP NE1 CE2 sing Y N 436 TRP NE1 HE1 sing N N 437 TRP CE2 CZ2 sing Y N 438 TRP CE3 CZ3 doub Y N 439 TRP CE3 HE3 sing N N 440 TRP CZ2 CH2 doub Y N 441 TRP CZ2 HZ2 sing N N 442 TRP CZ3 CH2 sing Y N 443 TRP CZ3 HZ3 sing N N 444 TRP CH2 HH2 sing N N 445 TRP OXT HXT sing N N 446 TYR N CA sing N N 447 TYR N H sing N N 448 TYR N H2 sing N N 449 TYR CA C sing N N 450 TYR CA CB sing N N 451 TYR CA HA sing N N 452 TYR C O doub N N 453 TYR C OXT sing N N 454 TYR CB CG sing N N 455 TYR CB HB2 sing N N 456 TYR CB HB3 sing N N 457 TYR CG CD1 doub Y N 458 TYR CG CD2 sing Y N 459 TYR CD1 CE1 sing Y N 460 TYR CD1 HD1 sing N N 461 TYR CD2 CE2 doub Y N 462 TYR CD2 HD2 sing N N 463 TYR CE1 CZ doub Y N 464 TYR CE1 HE1 sing N N 465 TYR CE2 CZ sing Y N 466 TYR CE2 HE2 sing N N 467 TYR CZ OH sing N N 468 TYR OH HH sing N N 469 TYR OXT HXT sing N N 470 U OP3 P sing N N 471 U OP3 HOP3 sing N N 472 U P OP1 doub N N 473 U P OP2 sing N N 474 U P "O5'" sing N N 475 U OP2 HOP2 sing N N 476 U "O5'" "C5'" sing N N 477 U "C5'" "C4'" sing N N 478 U "C5'" "H5'" sing N N 479 U "C5'" "H5''" sing N N 480 U "C4'" "O4'" sing N N 481 U "C4'" "C3'" sing N N 482 U "C4'" "H4'" sing N N 483 U "O4'" "C1'" sing N N 484 U "C3'" "O3'" sing N N 485 U "C3'" "C2'" sing N N 486 U "C3'" "H3'" sing N N 487 U "O3'" "HO3'" sing N N 488 U "C2'" "O2'" sing N N 489 U "C2'" "C1'" sing N N 490 U "C2'" "H2'" sing N N 491 U "O2'" "HO2'" sing N N 492 U "C1'" N1 sing N N 493 U "C1'" "H1'" sing N N 494 U N1 C2 sing N N 495 U N1 C6 sing N N 496 U C2 O2 doub N N 497 U C2 N3 sing N N 498 U N3 C4 sing N N 499 U N3 H3 sing N N 500 U C4 O4 doub N N 501 U C4 C5 sing N N 502 U C5 C6 doub N N 503 U C5 H5 sing N N 504 U C6 H6 sing N N 505 VAL N CA sing N N 506 VAL N H sing N N 507 VAL N H2 sing N N 508 VAL CA C sing N N 509 VAL CA CB sing N N 510 VAL CA HA sing N N 511 VAL C O doub N N 512 VAL C OXT sing N N 513 VAL CB CG1 sing N N 514 VAL CB CG2 sing N N 515 VAL CB HB sing N N 516 VAL CG1 HG11 sing N N 517 VAL CG1 HG12 sing N N 518 VAL CG1 HG13 sing N N 519 VAL CG2 HG21 sing N N 520 VAL CG2 HG22 sing N N 521 VAL CG2 HG23 sing N N 522 VAL OXT HXT sing N N 523 # _em_ctf_correction.id 1 _em_ctf_correction.details 'per micrograph' _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.avg_electron_dose_per_image 15 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 Coot ? 'MODEL FITTING' ? ? 2 'UCSF Chimera' ? 'MODEL FITTING' ? ? 3 EMAN ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3DKN 'double helix' 3DKN 'a-form double helix' 3DKN 'hairpin loop' 3DKN 'mismatched base pair' 3DKN 'internal loop' 3DKN 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 14 1_555 0.148 -0.146 0.364 -3.858 -5.838 -3.113 1 D_C53:G66_D D 53 ? D 66 ? 19 1 1 A G 2 1_555 A C 13 1_555 -0.209 -0.150 0.123 -8.333 -29.015 2.226 2 D_G54:C65_D D 54 ? D 65 ? 19 1 1 A U 3 1_555 A G 12 1_555 2.206 -0.539 0.401 -11.665 -20.197 2.185 3 D_U55:G64_D D 55 ? D 64 ? 28 1 1 A A 18 1_555 A U 11 1_555 0.676 -3.817 0.344 -3.525 19.729 66.351 4 D_A70:U63_D D 70 ? D 63 ? 23 3 1 B G 5 1_555 A C 10 1_555 -0.352 -0.115 -0.418 -8.894 -14.072 4.920 5 E_G84:C62_D E 84 ? D 62 ? 19 1 1 B C 6 1_555 A G 9 1_555 0.115 -0.141 0.182 -2.635 -11.253 -2.227 6 E_C85:G61_D E 85 ? D 61 ? 19 1 1 B A 7 1_555 A A 8 1_555 1.615 0.832 0.325 -20.807 -4.137 -174.318 7 E_A86:A60_D E 86 ? D 60 ? 1 2 1 A C 5 1_555 B G 10 1_555 -0.348 -0.119 0.453 -8.871 -3.402 1.077 8 D_C57:G89_E D 57 ? E 89 ? 19 1 1 A C 6 1_555 B G 9 1_555 0.188 -0.110 0.142 8.522 -0.188 5.226 9 D_C58:G88_E D 58 ? E 88 ? 19 1 1 B A 1 1_555 B G 15 1_555 2.217 6.720 -1.937 46.286 -10.346 146.343 10 E_A80:G94_E E 80 ? E 94 ? ? 6 1 B G 2 1_555 B C 14 1_555 -0.306 -0.206 -0.153 -4.898 -3.803 1.774 11 E_G81:C93_E E 81 ? E 93 ? 19 1 1 B C 3 1_555 B G 13 1_555 -0.069 -0.064 -0.062 1.259 -3.503 0.284 12 E_C82:G92_E E 82 ? E 92 ? 19 1 1 B C 4 1_555 B G 12 1_555 0.177 0.013 -0.312 12.499 7.704 2.957 13 E_C83:G91_E E 83 ? E 91 ? 19 1 1 C U 4 1_555 C U 32 1_555 -0.461 1.350 0.357 -31.065 -8.641 -134.715 14 F_U1418:U1446_F F 1418 ? F 1446 ? ? ? 1 C C 6 1_555 C G 30 1_555 -0.201 -0.103 0.025 10.406 -9.397 -5.262 15 F_C1420:G1444_F F 1420 ? F 1444 ? 19 1 1 C C 7 1_555 C G 29 1_555 -0.059 -0.104 0.224 2.847 -16.221 -1.305 16 F_C1421:G1443_F F 1421 ? F 1443 ? 19 1 1 C U 8 1_555 C A 28 1_555 -0.071 -0.021 0.184 -0.749 -12.004 -1.887 17 F_U1422:A1442_F F 1422 ? F 1442 ? 20 1 1 C C 9 1_555 C G 27 1_555 0.128 -0.072 -0.214 4.722 -10.608 3.172 18 F_C1423:G1441_F F 1423 ? F 1441 ? 19 1 1 C A 10 1_555 C U 26 1_555 -0.026 0.059 -0.105 -2.337 -17.044 5.506 19 F_A1424:U1440_F F 1424 ? F 1440 ? 20 1 1 C G 11 1_555 C C 25 1_555 -0.142 -0.030 -0.086 -14.818 -24.336 -1.806 20 F_G1425:C1439_F F 1425 ? F 1439 ? 19 1 1 C A 23 1_555 C U 15 1_555 -0.133 -0.120 0.034 -2.885 -23.283 6.146 21 F_A1437:U1429_F F 1437 ? F 1429 ? 20 1 1 C C 22 1_555 C G 16 1_555 0.153 -0.118 -0.014 -6.670 -4.192 -1.298 22 F_C1436:G1430_F F 1436 ? F 1430 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 14 1_555 A G 2 1_555 A C 13 1_555 0.946 -1.634 3.191 5.483 11.724 30.528 -4.676 -0.816 2.537 21.114 -9.875 33.099 1 DD_C53G54:C65G66_DD D 53 ? D 66 ? D 54 ? D 65 ? 1 A G 2 1_555 A C 13 1_555 A U 3 1_555 A G 12 1_555 -0.293 -0.868 3.313 0.145 3.242 46.714 -1.363 0.380 3.249 4.083 -0.183 46.821 2 DD_G54U55:G64C65_DD D 54 ? D 65 ? D 55 ? D 64 ? 1 A U 3 1_555 A G 12 1_555 A A 18 1_555 A U 11 1_555 -0.277 -3.210 1.354 -164.746 -7.748 140.275 -1.595 -0.102 1.419 -3.895 82.816 174.892 3 DD_U55A70:U63G64_DD D 55 ? D 64 ? D 70 ? D 63 ? 1 A A 18 1_555 A U 11 1_555 B G 5 1_555 A C 10 1_555 0.486 -4.403 -2.686 133.217 -107.192 179.801 -2.203 -0.245 -2.680 -53.596 -66.609 179.984 4 DE_A70G84:C62U63_DD D 70 ? D 63 ? E 84 ? D 62 ? 1 B G 5 1_555 A C 10 1_555 B C 6 1_555 A G 9 1_555 -0.654 -1.712 3.139 -3.463 -0.188 35.477 -2.771 0.580 3.196 -0.308 5.667 35.640 5 EE_G84C85:G61C62_DD E 84 ? D 62 ? E 85 ? D 61 ? 1 B C 6 1_555 A G 9 1_555 B A 7 1_555 A A 8 1_555 3.348 -0.650 -1.423 -86.765 -146.856 -108.167 0.060 1.833 -0.484 74.197 -43.837 -174.474 6 EE_C85A86:A60G61_DD E 85 ? D 61 ? E 86 ? D 60 ? 1 A C 5 1_555 B G 10 1_555 A C 6 1_555 B G 9 1_555 0.511 -0.999 2.828 4.114 6.162 30.111 -2.874 -0.285 2.622 11.640 -7.771 30.989 7 DD_C57C58:G88G89_EE D 57 ? E 89 ? D 58 ? E 88 ? 1 B A 1 1_555 B G 15 1_555 B G 2 1_555 B C 14 1_555 -2.198 -3.020 2.778 83.724 -123.443 94.581 -0.624 1.735 2.916 -65.001 -44.086 159.218 8 EE_A80G81:C93G94_EE E 80 ? E 94 ? E 81 ? E 93 ? 1 B G 2 1_555 B C 14 1_555 B C 3 1_555 B G 13 1_555 0.217 -2.252 3.184 0.606 -0.050 30.641 -4.251 -0.293 3.191 -0.095 -1.146 30.647 9 EE_G81C82:G92C93_EE E 81 ? E 93 ? E 82 ? E 92 ? 1 B C 3 1_555 B G 13 1_555 B C 4 1_555 B G 12 1_555 -0.438 -2.280 3.176 -0.189 -1.889 26.055 -4.533 0.918 3.333 -4.183 0.419 26.123 10 EE_C82C83:G91G92_EE E 82 ? E 92 ? E 83 ? E 91 ? 1 C C 6 1_555 C G 30 1_555 C C 7 1_555 C G 29 1_555 -0.631 -1.942 3.396 -4.224 2.951 37.511 -3.383 0.416 3.289 4.562 6.530 37.850 11 FF_C1420C1421:G1443G1444_FF F 1420 ? F 1444 ? F 1421 ? F 1443 ? 1 C C 7 1_555 C G 29 1_555 C U 8 1_555 C A 28 1_555 -0.526 -1.647 3.304 -3.590 7.327 30.456 -4.348 0.325 2.881 13.641 6.684 31.505 12 FF_C1421U1422:A1442G1443_FF F 1421 ? F 1443 ? F 1422 ? F 1442 ? 1 C U 8 1_555 C A 28 1_555 C C 9 1_555 C G 27 1_555 0.002 -1.126 3.158 0.929 3.271 31.482 -2.636 0.158 3.027 6.007 -1.705 31.660 13 FF_U1422C1423:G1441A1442_FF F 1422 ? F 1442 ? F 1423 ? F 1441 ? 1 C C 9 1_555 C G 27 1_555 C A 10 1_555 C U 26 1_555 0.147 -1.476 3.331 -1.376 15.184 31.503 -4.579 -0.438 2.383 26.136 2.368 34.914 14 FF_C1423A1424:U1440G1441_FF F 1423 ? F 1441 ? F 1424 ? F 1440 ? 1 C A 10 1_555 C U 26 1_555 C G 11 1_555 C C 25 1_555 0.508 -1.893 3.439 3.450 14.250 32.589 -5.047 -0.357 2.463 23.941 -5.795 35.653 15 FF_A1424G1425:C1439U1440_FF F 1424 ? F 1440 ? F 1425 ? F 1439 ? 1 C G 11 1_555 C C 25 1_555 C A 23 1_555 C U 15 1_555 0.631 -5.521 -1.359 -90.862 -142.083 -42.211 1.072 1.404 -4.511 74.096 -47.384 -169.416 16 FF_G1425A1437:U1429C1439_FF F 1425 ? F 1439 ? F 1437 ? F 1429 ? 1 C A 23 1_555 C U 15 1_555 C C 22 1_555 C G 16 1_555 0.142 1.607 -3.082 1.607 -17.267 -24.878 -5.871 0.012 -1.649 35.146 3.270 -30.247 17 FF_A1437C1436:G1430U1429_FF F 1437 ? F 1429 ? F 1436 ? F 1430 ? # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code 1 'experimental model' PDB 1RHZ 2 'experimental model' PDB 1S72 # _atom_sites.entry_id 3DKN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_