HEADER TRANSFERASE 01-JUL-08 3DMG TITLE T. THERMOPHILUS 16S RRNA N2 G1207 METHYLTRANSFERASE (RSMC) IN COMPLEX TITLE 2 WITH ADOHCY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TTHA0533; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 (STAR); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS MONOMETHYLTRANSERASE, 16S RRNA METHYLTRANSFERASE, N2 G1207 KEYWDS 2 METHYLTRANSFERASE, S-ADENOSYL-L-HOMOCYSTEINE, TRANSLATION, KEYWDS 3 METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.DEMIRCI,S.T.GREGORY,A.E.DAHLBERG,G.JOGL REVDAT 6 21-FEB-24 3DMG 1 REMARK SEQADV REVDAT 5 13-JUL-11 3DMG 1 VERSN REVDAT 4 24-FEB-09 3DMG 1 VERSN REVDAT 3 07-OCT-08 3DMG 1 JRNL REVDAT 2 09-SEP-08 3DMG 1 JRNL REVDAT 1 29-JUL-08 3DMG 0 JRNL AUTH H.DEMIRCI,S.T.GREGORY,A.E.DAHLBERG,G.JOGL JRNL TITL CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 16 S RRNA JRNL TITL 2 METHYLTRANSFERASE RSMC IN COMPLEX WITH COFACTOR AND JRNL TITL 3 SUBSTRATE GUANOSINE. JRNL REF J.BIOL.CHEM. V. 283 26548 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18667428 JRNL DOI 10.1074/JBC.M804005200 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 58855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3143 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4186 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 233 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2833 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 716 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.607 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2986 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4063 ; 1.304 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 5.952 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;30.790 ;22.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 470 ;12.061 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2281 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1458 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2055 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 373 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.103 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1907 ; 0.664 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2969 ; 1.039 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1201 ; 1.861 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1094 ; 2.856 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 34.1000 51.2860 -2.0000 REMARK 3 T TENSOR REMARK 3 T11: -0.0497 T22: 0.0003 REMARK 3 T33: -0.0671 T12: -0.0105 REMARK 3 T13: -0.0086 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 1.0928 L22: 1.4588 REMARK 3 L33: 1.4019 L12: -0.0143 REMARK 3 L13: -0.3622 L23: 0.4375 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.2494 S13: -0.1401 REMARK 3 S21: 0.0203 S22: -0.0106 S23: 0.0321 REMARK 3 S31: 0.2589 S32: 0.0135 S33: 0.0275 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4650 61.9160 25.2770 REMARK 3 T TENSOR REMARK 3 T11: 0.0062 T22: -0.0651 REMARK 3 T33: -0.0754 T12: 0.0174 REMARK 3 T13: 0.0440 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.7839 L22: 1.0772 REMARK 3 L33: 2.6537 L12: 0.1739 REMARK 3 L13: -0.0732 L23: -0.4094 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: -0.1565 S13: -0.0108 REMARK 3 S21: 0.3333 S22: 0.0066 S23: 0.1095 REMARK 3 S31: -0.1416 S32: -0.1802 S33: 0.0190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. FOR STRUCTURE DETERMINATION, AUTHORS STATE THAT THEY REMARK 3 SOLVED THESE STRUCTURES BY USING AN ANOMALOUS DATA FROM ANOTHER REMARK 3 CRYSTAL. AUTHORS REFINED THESE DATASETS BY USING PREVIOUS MODEL REMARK 3 WITHOUT ANY MOLECULAR REPLACEMENT. REMARK 4 REMARK 4 3DMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 2008 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : MONOCHROMATOR SYSTEM CONSISTING REMARK 200 OF A HORIZONTALLY DEFLECTING AND REMARK 200 FOCUSING CRYSTAL PRECEDED BY A REMARK 200 VERTICALLY FOCUSING MIRROR. REMARK 200 DISTANCE FROM MONOCHROMATOR TO REMARK 200 SAMPLE IS VARIABLE BETWEEN 2.5 REMARK 200 AND 4.5 M. DISTANCE FROM THE REMARK 200 MONOCHROMATOR TO SOURCE IS ~10.5 REMARK 200 M. REMARK 200 OPTICS : SLITS: VARIABLE VERTICAL AND REMARK 200 HORIZONTAL SLITS. MONOCHROMATOR: REMARK 200 MONOCHROMATOR SYSTEM CONSISTING REMARK 200 OF A HORIZONTALLY DEFLECTING AND REMARK 200 FOCUSING CRYSTAL PRECEDED BY A REMARK 200 VERTICALLY FOCUSING MIRROR. REMARK 200 DISTANCE FROM MONOCHROMATOR TO REMARK 200 SAMPLE IS VARIABLE BETWEEN 2.5 REMARK 200 AND 4.5 M. DISTANCE FROM THE REMARK 200 MONOCHROMATOR TO SOURCE IS ~10.5 REMARK 200 M. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58855 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5) 1.5 M LITHIUM REMARK 280 SULFATE MONOHYDRATE, MICROBATCH TECHNIQUE UNDER OIL, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.48400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.46500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.99750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.46500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.48400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.99750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 374 REMARK 465 ARG A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 HIS A 379 REMARK 465 HIS A 380 REMARK 465 HIS A 381 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 79 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 281 CD CE NZ REMARK 470 ARG A 373 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB PHE A 79 O HOH A 930 1.76 REMARK 500 NH1 ARG A 90 O HOH A 690 2.06 REMARK 500 O HOH A 507 O HOH A 1002 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 53 63.09 -154.08 REMARK 500 VAL A 289 -123.30 49.77 REMARK 500 ALA A 363 -103.62 -145.16 REMARK 500 ALA A 363 -104.47 -145.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 382 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 385 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 386 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 387 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 388 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DMF RELATED DB: PDB REMARK 900 T. THERMOPHILUS 16S RRNA N2 G1207 METHYLTRANSFERASE (RSMC) IN REMARK 900 COMPLEX WITH ADOMET REMARK 900 RELATED ID: 3DMH RELATED DB: PDB REMARK 900 T. THERMOPHILUS 16S RRNA N2 G1207 METHYLTRANSFERASE (RSMC) IN REMARK 900 COMPLEX WITH ADOMET AND GUANOSINE DBREF 3DMG A 1 375 UNP Q5SKW0 Q5SKW0_THET8 1 375 SEQADV 3DMG HIS A 376 UNP Q5SKW0 EXPRESSION TAG SEQADV 3DMG HIS A 377 UNP Q5SKW0 EXPRESSION TAG SEQADV 3DMG HIS A 378 UNP Q5SKW0 EXPRESSION TAG SEQADV 3DMG HIS A 379 UNP Q5SKW0 EXPRESSION TAG SEQADV 3DMG HIS A 380 UNP Q5SKW0 EXPRESSION TAG SEQADV 3DMG HIS A 381 UNP Q5SKW0 EXPRESSION TAG SEQRES 1 A 381 MET SER LEU THR ARG GLU ALA TYR HIS ARG LEU THR PRO SEQRES 2 A 381 LEU PRO HIS PRO GLY GLY ARG LEU PHE ILE LYS PRO GLY SEQRES 3 A 381 ALA ARG GLY TYR ARG ASP PRO VAL HIS ASP LEU LEU GLN SEQRES 4 A 381 LYS THR VAL GLU PRO PHE GLY GLU ARG ALA LEU ASP LEU SEQRES 5 A 381 ASN PRO GLY VAL GLY TRP GLY SER LEU PRO LEU GLU GLY SEQRES 6 A 381 ARG MET ALA VAL GLU ARG LEU GLU THR SER ARG ALA ALA SEQRES 7 A 381 PHE ARG CYS LEU THR ALA SER GLY LEU GLN ALA ARG LEU SEQRES 8 A 381 ALA LEU PRO TRP GLU ALA ALA ALA GLY ALA TYR ASP LEU SEQRES 9 A 381 VAL VAL LEU ALA LEU PRO ALA GLY ARG GLY THR ALA TYR SEQRES 10 A 381 VAL GLN ALA SER LEU VAL ALA ALA ALA ARG ALA LEU ARG SEQRES 11 A 381 MET GLY GLY ARG LEU TYR LEU ALA GLY ASP LYS ASN LYS SEQRES 12 A 381 GLY PHE GLU ARG TYR PHE LYS GLU ALA ARG ALA LEU LEU SEQRES 13 A 381 GLY TYR GLY VAL VAL VAL ARG ARG GLU GLY PRO TYR ARG SEQRES 14 A 381 VAL ALA LEU LEU GLU LYS GLU LYS GLU ALA PRO PRO LEU SEQRES 15 A 381 PRO SER LEU TRP ARG ALA PHE SER ALA ARG ILE LEU GLY SEQRES 16 A 381 ALA GLU TYR THR PHE HIS HIS LEU PRO GLY VAL PHE SER SEQRES 17 A 381 ALA GLY LYS VAL ASP PRO ALA SER LEU LEU LEU LEU GLU SEQRES 18 A 381 ALA LEU GLN GLU ARG LEU GLY PRO GLU GLY VAL ARG GLY SEQRES 19 A 381 ARG GLN VAL LEU ASP LEU GLY ALA GLY TYR GLY ALA LEU SEQRES 20 A 381 THR LEU PRO LEU ALA ARG MET GLY ALA GLU VAL VAL GLY SEQRES 21 A 381 VAL GLU ASP ASP LEU ALA SER VAL LEU SER LEU GLN LYS SEQRES 22 A 381 GLY LEU GLU ALA ASN ALA LEU LYS ALA GLN ALA LEU HIS SEQRES 23 A 381 SER ASP VAL ASP GLU ALA LEU THR GLU GLU ALA ARG PHE SEQRES 24 A 381 ASP ILE ILE VAL THR ASN PRO PRO PHE HIS VAL GLY GLY SEQRES 25 A 381 ALA VAL ILE LEU ASP VAL ALA GLN ALA PHE VAL ASN VAL SEQRES 26 A 381 ALA ALA ALA ARG LEU ARG PRO GLY GLY VAL PHE PHE LEU SEQRES 27 A 381 VAL SER ASN PRO PHE LEU LYS TYR GLU PRO LEU LEU GLU SEQRES 28 A 381 GLU LYS PHE GLY ALA PHE GLN THR LEU LYS VAL ALA GLU SEQRES 29 A 381 TYR LYS VAL LEU PHE ALA GLU LYS ARG GLY ARG HIS HIS SEQRES 30 A 381 HIS HIS HIS HIS HET SO4 A 382 5 HET SO4 A 383 5 HET SO4 A 384 5 HET SO4 A 385 5 HET SO4 A 386 5 HET SO4 A 387 5 HET SAH A 388 26 HETNAM SO4 SULFATE ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 SAH C14 H20 N6 O5 S FORMUL 9 HOH *716(H2 O) HELIX 1 1 THR A 4 ARG A 10 1 7 HELIX 2 2 ASP A 32 LYS A 40 1 9 HELIX 3 3 SER A 60 GLU A 64 5 5 HELIX 4 4 SER A 75 SER A 85 1 11 HELIX 5 5 LEU A 93 ALA A 97 5 5 HELIX 6 6 PRO A 110 ARG A 113 5 4 HELIX 7 7 GLY A 114 ALA A 128 1 15 HELIX 8 8 GLY A 144 GLY A 157 1 14 HELIX 9 9 ASP A 213 GLY A 228 1 16 HELIX 10 10 LEU A 247 MET A 254 1 8 HELIX 11 11 ASP A 264 ASN A 278 1 15 HELIX 12 12 LEU A 316 ARG A 329 1 14 HELIX 13 13 LYS A 345 GLY A 355 1 11 SHEET 1 A 2 THR A 12 HIS A 16 0 SHEET 2 A 2 GLY A 19 ILE A 23 -1 O LEU A 21 N LEU A 14 SHEET 1 B 7 ARG A 90 LEU A 91 0 SHEET 2 B 7 ALA A 68 GLU A 73 1 N ARG A 71 O ARG A 90 SHEET 3 B 7 ARG A 48 ASP A 51 1 N ALA A 49 O ALA A 68 SHEET 4 B 7 TYR A 102 ALA A 108 1 O VAL A 106 N LEU A 50 SHEET 5 B 7 LEU A 129 ASP A 140 1 O TYR A 136 N VAL A 105 SHEET 6 B 7 TYR A 168 GLU A 174 -1 O ALA A 171 N LEU A 137 SHEET 7 B 7 GLY A 159 GLU A 165 -1 N VAL A 160 O LEU A 172 SHEET 1 C 2 ARG A 187 ILE A 193 0 SHEET 2 C 2 ALA A 196 HIS A 202 -1 O ALA A 196 N ILE A 193 SHEET 1 D 7 GLN A 283 HIS A 286 0 SHEET 2 D 7 GLU A 257 GLU A 262 1 N GLY A 260 O GLN A 283 SHEET 3 D 7 GLN A 236 LEU A 240 1 N VAL A 237 O VAL A 259 SHEET 4 D 7 PHE A 299 THR A 304 1 O VAL A 303 N LEU A 238 SHEET 5 D 7 LEU A 330 SER A 340 1 O PHE A 337 N ILE A 302 SHEET 6 D 7 LYS A 366 GLU A 371 -1 O LEU A 368 N LEU A 338 SHEET 7 D 7 GLN A 358 VAL A 362 -1 N GLN A 358 O PHE A 369 SITE 1 AC1 9 ARG A 28 ASN A 53 PRO A 110 ALA A 111 SITE 2 AC1 9 GLY A 112 ARG A 113 HOH A 445 HOH A 482 SITE 3 AC1 9 HOH A 883 SITE 1 AC2 6 THR A 4 ARG A 5 ASN A 324 LYS A 353 SITE 2 AC2 6 HOH A 519 HOH A 668 SITE 1 AC3 5 SER A 184 LEU A 185 TRP A 186 HOH A 554 SITE 2 AC3 5 HOH A1041 SITE 1 AC4 3 LYS A 177 ARG A 192 GLY A 195 SITE 1 AC5 5 ARG A 164 LEU A 360 LYS A 361 HOH A 486 SITE 2 AC5 5 HOH A 526 SITE 1 AC6 3 ARG A 331 HOH A 651 HOH A 997 SITE 1 AC7 21 TYR A 8 PHE A 207 SER A 216 GLY A 241 SITE 2 AC7 21 ALA A 242 GLY A 243 ALA A 246 GLU A 262 SITE 3 AC7 21 ASP A 263 SER A 287 ASP A 288 ASN A 305 SITE 4 AC7 21 HOH A 407 HOH A 422 HOH A 428 HOH A 436 SITE 5 AC7 21 HOH A 437 HOH A 448 HOH A 453 HOH A 493 SITE 6 AC7 21 HOH A 863 CRYST1 50.968 87.995 94.930 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019620 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010534 0.00000