HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-JUL-08 3DNH TITLE THE CRYSTAL STRUCTURE OF THE PROTEIN ATU2129 (UNKNOWN FUNCTION) FROM TITLE 2 AGROBACTERIUM TUMEFACIENS STR. C58 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN ATU2129; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: STR. C58; SOURCE 5 GENE: AGR_C_3862, ATU2129; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS APC6114, PROTEIN ATU2129, AGROBACTERIUM TUMEFACIENS STR. C58, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,X.XU,H.ZHENG,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 3DNH 1 VERSN REVDAT 2 24-FEB-09 3DNH 1 VERSN REVDAT 1 02-SEP-08 3DNH 0 JRNL AUTH K.TAN,X.XU,H.ZHENG,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE PROTEIN ATU2129 (UNKNOWN JRNL TITL 2 FUNCTION) FROM AGROBACTERIUM TUMEFACIENS STR. C58 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 32787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1726 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2256 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3541 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.276 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3620 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4930 ; 1.647 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 465 ; 6.506 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;30.643 ;22.069 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 582 ;18.304 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.215 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 585 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2721 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1703 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2437 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 301 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.216 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.198 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2396 ; 0.820 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3746 ; 1.316 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1367 ; 2.216 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1182 ; 3.304 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2540 64.1680 7.5780 REMARK 3 T TENSOR REMARK 3 T11: 0.0370 T22: -0.1400 REMARK 3 T33: 0.2160 T12: -0.1448 REMARK 3 T13: -0.0589 T23: 0.1458 REMARK 3 L TENSOR REMARK 3 L11: 28.4896 L22: 8.7033 REMARK 3 L33: 11.8059 L12: 14.3047 REMARK 3 L13: -7.5364 L23: 0.0791 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: 0.7428 S13: 1.5365 REMARK 3 S21: -0.5207 S22: -0.4564 S23: -0.2678 REMARK 3 S31: -0.7177 S32: 0.3428 S33: 0.4989 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1290 49.2500 11.1080 REMARK 3 T TENSOR REMARK 3 T11: -0.1272 T22: -0.2490 REMARK 3 T33: -0.1912 T12: 0.0259 REMARK 3 T13: 0.0009 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 3.7654 L22: 2.1686 REMARK 3 L33: 2.9861 L12: 0.1481 REMARK 3 L13: 1.7443 L23: 0.7782 REMARK 3 S TENSOR REMARK 3 S11: -0.1097 S12: -0.1766 S13: 0.2561 REMARK 3 S21: -0.1215 S22: -0.0302 S23: -0.0004 REMARK 3 S31: -0.0599 S32: -0.0665 S33: 0.1399 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9530 39.1510 -7.9820 REMARK 3 T TENSOR REMARK 3 T11: -0.0507 T22: -0.2345 REMARK 3 T33: -0.2882 T12: -0.0079 REMARK 3 T13: 0.0545 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 4.1240 L22: 8.1112 REMARK 3 L33: 3.1417 L12: 2.7835 REMARK 3 L13: 1.2900 L23: 0.5163 REMARK 3 S TENSOR REMARK 3 S11: -0.2024 S12: 0.3231 S13: -0.2432 REMARK 3 S21: -0.4698 S22: 0.2178 S23: -0.0729 REMARK 3 S31: -0.1609 S32: 0.0187 S33: -0.0154 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3120 54.6930 32.8470 REMARK 3 T TENSOR REMARK 3 T11: -0.0282 T22: 0.2457 REMARK 3 T33: -0.0705 T12: 0.1145 REMARK 3 T13: 0.0472 T23: -0.1983 REMARK 3 L TENSOR REMARK 3 L11: 37.8558 L22: 16.6328 REMARK 3 L33: 17.2642 L12: -18.6598 REMARK 3 L13: -9.1251 L23: 2.8420 REMARK 3 S TENSOR REMARK 3 S11: -0.4951 S12: -2.6924 S13: 1.6929 REMARK 3 S21: 0.7782 S22: 1.0158 S23: -0.1672 REMARK 3 S31: -0.1435 S32: -0.5940 S33: -0.5206 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7920 44.7600 20.2160 REMARK 3 T TENSOR REMARK 3 T11: -0.1163 T22: -0.1007 REMARK 3 T33: -0.2415 T12: 0.0159 REMARK 3 T13: 0.0202 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: 3.0058 L22: 2.0174 REMARK 3 L33: 1.8676 L12: -0.8603 REMARK 3 L13: 0.3575 L23: 0.1076 REMARK 3 S TENSOR REMARK 3 S11: -0.1244 S12: -0.2938 S13: 0.1763 REMARK 3 S21: -0.0019 S22: 0.1073 S23: 0.0000 REMARK 3 S31: 0.1165 S32: 0.2753 S33: 0.0171 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 174 B 252 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5830 24.2440 26.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: -0.0589 REMARK 3 T33: -0.2359 T12: 0.1354 REMARK 3 T13: 0.0394 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 4.3898 L22: 5.7059 REMARK 3 L33: 5.2807 L12: -0.7591 REMARK 3 L13: -0.3351 L23: 1.4221 REMARK 3 S TENSOR REMARK 3 S11: -0.2154 S12: -0.3822 S13: -0.5043 REMARK 3 S21: 0.1678 S22: 0.3098 S23: 0.0542 REMARK 3 S31: 0.6375 S32: 0.3428 S33: -0.0944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-08. REMARK 100 THE RCSB ID CODE IS RCSB048256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929, 0.97942 REMARK 200 MONOCHROMATOR : SI CRYSTAL 111 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34554 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.60800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/RESOLVE/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 0.2M NA(OAC), 30% PEG REMARK 280 8K, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.41500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS EXPERIMENTALLY REMARK 300 UNKNOWN. THE CHAINS A AND B ARE PREDICTED TO FORM A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 LEU A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 13 REMARK 465 THR A 14 REMARK 465 LYS A 15 REMARK 465 ILE A 16 REMARK 465 GLU A 17 REMARK 465 PRO A 18 REMARK 465 SER A 19 REMARK 465 ALA A 20 REMARK 465 GLY A 21 REMARK 465 ALA A 22 REMARK 465 PRO A 23 REMARK 465 GLY A 157 REMARK 465 PRO A 158 REMARK 465 ALA A 159 REMARK 465 ARG A 160 REMARK 465 ASN A 161 REMARK 465 ALA A 162 REMARK 465 GLY A 255 REMARK 465 SER A 256 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 LEU B 2 REMARK 465 ASP B 3 REMARK 465 VAL B 4 REMARK 465 GLY B 13 REMARK 465 THR B 14 REMARK 465 LYS B 15 REMARK 465 ILE B 16 REMARK 465 GLU B 17 REMARK 465 PRO B 18 REMARK 465 SER B 19 REMARK 465 ALA B 20 REMARK 465 GLY B 157 REMARK 465 PRO B 158 REMARK 465 ALA B 159 REMARK 465 ARG B 160 REMARK 465 ASN B 161 REMARK 465 ALA B 162 REMARK 465 SER B 163 REMARK 465 LEU B 253 REMARK 465 LYS B 254 REMARK 465 GLY B 255 REMARK 465 SER B 256 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 SER A 163 OG REMARK 470 ASN B 164 CG OD1 REMARK 470 LEU B 252 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 140 150.02 -43.84 REMARK 500 THR A 209 156.80 -48.42 REMARK 500 SER B 226 -169.50 -105.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 119 21.0 L L OUTSIDE RANGE REMARK 500 VAL B 48 23.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 401 DISTANCE = 5.73 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6114 RELATED DB: TARGETDB DBREF 3DNH A 1 254 UNP A9CI98 A9CI98_AGRT5 1 254 DBREF 3DNH B 1 254 UNP A9CI98 A9CI98_AGRT5 1 254 SEQADV 3DNH GLY A -1 UNP A9CI98 EXPRESSION TAG SEQADV 3DNH HIS A 0 UNP A9CI98 EXPRESSION TAG SEQADV 3DNH GLY A 255 UNP A9CI98 EXPRESSION TAG SEQADV 3DNH SER A 256 UNP A9CI98 EXPRESSION TAG SEQADV 3DNH GLY B -1 UNP A9CI98 EXPRESSION TAG SEQADV 3DNH HIS B 0 UNP A9CI98 EXPRESSION TAG SEQADV 3DNH GLY B 255 UNP A9CI98 EXPRESSION TAG SEQADV 3DNH SER B 256 UNP A9CI98 EXPRESSION TAG SEQRES 1 A 258 GLY HIS MSE LEU ASP VAL ALA PRO PRO VAL ILE THR PRO SEQRES 2 A 258 ARG GLY THR LYS ILE GLU PRO SER ALA GLY ALA PRO PHE SEQRES 3 A 258 GLU ALA VAL ARG VAL ALA ARG ASP VAL LEU HIS THR SER SEQRES 4 A 258 ARG THR ALA ALA LEU ALA THR LEU ASP PRO VAL SER GLY SEQRES 5 A 258 TYR PRO TYR THR THR ALA THR ASN ILE GLY ILE GLU PRO SEQRES 6 A 258 ASP GLY THR PRO PHE PHE PHE ALA ALA GLY LEU THR LEU SEQRES 7 A 258 HIS ALA ARG ASN MSE GLU THR ASP ALA ARG ILE SER VAL SEQRES 8 A 258 THR LEU ALA PRO PHE GLY LYS GLY ASP ALA LEU THR LEU SEQRES 9 A 258 PRO ARG LEU THR LEU VAL GLY ARG ALA ASP ARG ILE GLY SEQRES 10 A 258 PRO ASP GLU VAL PRO LEU ALA ILE ALA ARG TYR ILE ALA SEQRES 11 A 258 ARG TYR PRO LYS ALA LYS LEU TYR LEU SER LEU PRO ASP SEQRES 12 A 258 THR ARG LEU TYR ARG LEU ARG THR GLU GLY VAL GLN ILE SEQRES 13 A 258 ASN GLY GLY PRO ALA ARG ASN ALA SER ASN ILE THR PRO SEQRES 14 A 258 ALA ASP LEU ARG THR ASP LEU SER GLY ALA GLU GLU LEU SEQRES 15 A 258 MSE ALA ALA ALA GLU SER GLU ALA THR ARG LEU ASN ALA SEQRES 16 A 258 ILE LYS GLY GLU ALA SER ARG LEU ALA VAL LEU ALA GLY SEQRES 17 A 258 ALA LYS THR GLY ARG TRP LYS ILE THR SER ILE ASP PRO SEQRES 18 A 258 ASP GLY ILE ASP LEU ALA SER ALA SER ASP LEU ALA ARG SEQRES 19 A 258 LEU TRP PHE ALA GLU ARG VAL GLU THR LEU LYS GLN PHE SEQRES 20 A 258 GLU LYS ALA LEU ALA GLN LEU LEU LYS GLY SER SEQRES 1 B 258 GLY HIS MSE LEU ASP VAL ALA PRO PRO VAL ILE THR PRO SEQRES 2 B 258 ARG GLY THR LYS ILE GLU PRO SER ALA GLY ALA PRO PHE SEQRES 3 B 258 GLU ALA VAL ARG VAL ALA ARG ASP VAL LEU HIS THR SER SEQRES 4 B 258 ARG THR ALA ALA LEU ALA THR LEU ASP PRO VAL SER GLY SEQRES 5 B 258 TYR PRO TYR THR THR ALA THR ASN ILE GLY ILE GLU PRO SEQRES 6 B 258 ASP GLY THR PRO PHE PHE PHE ALA ALA GLY LEU THR LEU SEQRES 7 B 258 HIS ALA ARG ASN MSE GLU THR ASP ALA ARG ILE SER VAL SEQRES 8 B 258 THR LEU ALA PRO PHE GLY LYS GLY ASP ALA LEU THR LEU SEQRES 9 B 258 PRO ARG LEU THR LEU VAL GLY ARG ALA ASP ARG ILE GLY SEQRES 10 B 258 PRO ASP GLU VAL PRO LEU ALA ILE ALA ARG TYR ILE ALA SEQRES 11 B 258 ARG TYR PRO LYS ALA LYS LEU TYR LEU SER LEU PRO ASP SEQRES 12 B 258 THR ARG LEU TYR ARG LEU ARG THR GLU GLY VAL GLN ILE SEQRES 13 B 258 ASN GLY GLY PRO ALA ARG ASN ALA SER ASN ILE THR PRO SEQRES 14 B 258 ALA ASP LEU ARG THR ASP LEU SER GLY ALA GLU GLU LEU SEQRES 15 B 258 MSE ALA ALA ALA GLU SER GLU ALA THR ARG LEU ASN ALA SEQRES 16 B 258 ILE LYS GLY GLU ALA SER ARG LEU ALA VAL LEU ALA GLY SEQRES 17 B 258 ALA LYS THR GLY ARG TRP LYS ILE THR SER ILE ASP PRO SEQRES 18 B 258 ASP GLY ILE ASP LEU ALA SER ALA SER ASP LEU ALA ARG SEQRES 19 B 258 LEU TRP PHE ALA GLU ARG VAL GLU THR LEU LYS GLN PHE SEQRES 20 B 258 GLU LYS ALA LEU ALA GLN LEU LEU LYS GLY SER MODRES 3DNH MSE A 81 MET SELENOMETHIONINE MODRES 3DNH MSE A 181 MET SELENOMETHIONINE MODRES 3DNH MSE B 81 MET SELENOMETHIONINE MODRES 3DNH MSE B 181 MET SELENOMETHIONINE HET MSE A 81 8 HET MSE A 181 8 HET MSE B 81 8 HET MSE B 181 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *289(H2 O) HELIX 1 1 GLU A 25 SER A 37 1 13 HELIX 2 2 THR A 75 ASP A 84 1 10 HELIX 3 3 PRO A 93 GLY A 97 5 5 HELIX 4 4 ASP A 98 LEU A 102 5 5 HELIX 5 5 GLY A 115 ASP A 117 5 3 HELIX 6 6 GLU A 118 TYR A 130 1 13 HELIX 7 7 LYS A 132 LEU A 137 1 6 HELIX 8 8 THR A 166 ARG A 171 1 6 HELIX 9 9 ALA A 177 ALA A 193 1 17 HELIX 10 10 GLY A 196 ALA A 205 1 10 HELIX 11 11 THR A 241 LEU A 253 1 13 HELIX 12 12 PRO B 23 SER B 37 1 15 HELIX 13 13 THR B 75 ASP B 84 1 10 HELIX 14 14 ASP B 98 LEU B 102 5 5 HELIX 15 15 GLY B 115 ASP B 117 5 3 HELIX 16 16 GLU B 118 TYR B 130 1 13 HELIX 17 17 PRO B 131 TYR B 136 5 6 HELIX 18 18 PRO B 167 ARG B 171 5 5 HELIX 19 19 ALA B 177 ALA B 193 1 17 HELIX 20 20 GLY B 196 ALA B 205 1 10 HELIX 21 21 THR B 241 LEU B 252 1 12 SHEET 1 A 7 PRO A 52 ASN A 58 0 SHEET 2 A 7 THR A 39 LEU A 45 -1 N THR A 44 O TYR A 53 SHEET 3 A 7 ARG A 86 LEU A 91 -1 O SER A 88 N ALA A 43 SHEET 4 A 7 ARG A 104 ARG A 113 -1 O LEU A 105 N LEU A 91 SHEET 5 A 7 THR A 142 ASN A 155 -1 O GLU A 150 N VAL A 108 SHEET 6 A 7 PRO A 67 ALA A 72 -1 N PHE A 69 O TYR A 145 SHEET 7 A 7 GLY A 60 ILE A 61 -1 N GLY A 60 O PHE A 68 SHEET 1 B 3 LYS A 213 ASP A 218 0 SHEET 2 B 3 GLY A 221 ALA A 225 -1 O ASP A 223 N SER A 216 SHEET 3 B 3 LEU A 230 TRP A 234 -1 O ALA A 231 N LEU A 224 SHEET 1 C 7 PRO B 52 ASN B 58 0 SHEET 2 C 7 THR B 39 LEU B 45 -1 N ALA B 40 O THR B 57 SHEET 3 C 7 ARG B 86 LEU B 91 -1 O SER B 88 N ALA B 43 SHEET 4 C 7 ARG B 104 ARG B 113 -1 O GLY B 109 N ILE B 87 SHEET 5 C 7 THR B 142 ASN B 155 -1 O GLU B 150 N VAL B 108 SHEET 6 C 7 PRO B 67 ALA B 72 -1 N PRO B 67 O LEU B 147 SHEET 7 C 7 GLY B 60 ILE B 61 -1 N GLY B 60 O PHE B 68 SHEET 1 D 3 LYS B 213 ASP B 218 0 SHEET 2 D 3 GLY B 221 ALA B 225 -1 O ALA B 225 N LYS B 213 SHEET 3 D 3 LEU B 230 TRP B 234 -1 O LEU B 233 N ILE B 222 LINK C ASN A 80 N MSE A 81 1555 1555 1.33 LINK C MSE A 81 N GLU A 82 1555 1555 1.34 LINK C LEU A 180 N MSE A 181 1555 1555 1.33 LINK C MSE A 181 N ALA A 182 1555 1555 1.34 LINK C ASN B 80 N MSE B 81 1555 1555 1.33 LINK C MSE B 81 N GLU B 82 1555 1555 1.33 LINK C LEU B 180 N MSE B 181 1555 1555 1.32 LINK C MSE B 181 N ALA B 182 1555 1555 1.33 CRYST1 53.651 66.830 69.967 90.00 108.19 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018639 0.000000 0.006126 0.00000 SCALE2 0.000000 0.014963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015045 0.00000