HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-JUL-08 3DNP TITLE CRYSTAL STRUCTURE OF STRESS RESPONSE PROTEIN YHAX FROM BACILLUS TITLE 2 SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRESS RESPONSE PROTEIN YHAX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YHAX, BSU09830; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG19B KEYWDS STRESS RESPONSE PROTEIN YHAX, BACILLUS SUBTILIS, STRUCTURAL GENOMICS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, STRESS RESPONSE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,C.TESAR,R.JEDRZEJCZAK,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 5 30-OCT-24 3DNP 1 REMARK SEQADV LINK REVDAT 4 25-OCT-17 3DNP 1 REMARK REVDAT 3 13-JUL-11 3DNP 1 VERSN REVDAT 2 24-FEB-09 3DNP 1 VERSN REVDAT 1 29-JUL-08 3DNP 0 JRNL AUTH C.CHANG,C.TESAR,R.JEDRZEJCZAK,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF STRESS RESPONSE PROTEIN YHAX FROM JRNL TITL 2 BACILLUS SUBTILIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 29313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1491 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1972 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2161 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.501 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2367 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3235 ; 1.387 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 321 ; 5.892 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;37.539 ;25.278 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;14.073 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.829 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 373 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1783 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1129 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1624 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 204 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.251 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.111 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1506 ; 0.917 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2386 ; 1.431 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 966 ; 2.613 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 830 ; 3.720 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 39.1534 23.6437 63.8024 REMARK 3 T TENSOR REMARK 3 T11: -0.0181 T22: -0.0473 REMARK 3 T33: -0.0318 T12: -0.0052 REMARK 3 T13: 0.0062 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 1.5386 L22: 1.0686 REMARK 3 L33: 1.1870 L12: -0.6300 REMARK 3 L13: -0.7456 L23: 0.4974 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: 0.1508 S13: -0.0175 REMARK 3 S21: -0.1220 S22: -0.0920 S23: 0.1013 REMARK 3 S31: -0.0576 S32: -0.1289 S33: 0.0383 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 48.8828 24.1107 85.3048 REMARK 3 T TENSOR REMARK 3 T11: -0.0187 T22: -0.0386 REMARK 3 T33: -0.0468 T12: 0.0355 REMARK 3 T13: -0.0017 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.2062 L22: 2.1385 REMARK 3 L33: 1.6310 L12: -0.3760 REMARK 3 L13: 0.1242 L23: 0.5488 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.0466 S13: -0.0056 REMARK 3 S21: 0.1939 S22: 0.0643 S23: -0.2357 REMARK 3 S31: 0.2178 S32: 0.1587 S33: -0.0218 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 235 REMARK 3 ORIGIN FOR THE GROUP (A): 39.6282 10.7887 68.0160 REMARK 3 T TENSOR REMARK 3 T11: -0.0092 T22: -0.1133 REMARK 3 T33: 0.0147 T12: -0.0232 REMARK 3 T13: 0.0600 T23: -0.0559 REMARK 3 L TENSOR REMARK 3 L11: 1.3786 L22: 1.4451 REMARK 3 L33: 2.2965 L12: -0.0902 REMARK 3 L13: -0.1112 L23: 0.4870 REMARK 3 S TENSOR REMARK 3 S11: -0.0894 S12: 0.0409 S13: -0.2534 REMARK 3 S21: 0.1822 S22: -0.0423 S23: 0.1533 REMARK 3 S31: 0.2642 S32: -0.0262 S33: 0.1317 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 236 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 49.3582 11.2803 55.6968 REMARK 3 T TENSOR REMARK 3 T11: -0.0121 T22: -0.0435 REMARK 3 T33: -0.0015 T12: -0.0051 REMARK 3 T13: 0.0335 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 2.2884 L22: 2.2345 REMARK 3 L33: 1.5051 L12: -0.7959 REMARK 3 L13: -0.5131 L23: 0.9911 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: 0.2154 S13: -0.2218 REMARK 3 S21: -0.1084 S22: -0.1045 S23: 0.1755 REMARK 3 S31: 0.0136 S32: -0.0927 S33: 0.0964 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DNP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29455 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.89400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MGCL2, 0.1 M HEPES PH 7.5, 30% REMARK 280 PEGMME 550, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.74250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.96950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.96950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.11375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.96950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.96950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.37125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.96950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.96950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.11375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.96950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.96950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.37125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.74250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 161.48500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLY A 278 REMARK 465 PHE A 279 REMARK 465 LEU A 280 REMARK 465 ASP A 281 REMARK 465 LYS A 282 REMARK 465 PHE A 283 REMARK 465 HIS A 284 REMARK 465 MSE A 285 REMARK 465 LYS A 286 REMARK 465 ARG A 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 LYS A 277 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 399 O HOH A 539 2.07 REMARK 500 NH2 ARG A 185 OD1 ASP A 188 2.14 REMARK 500 CD2 TYR A 161 O HOH A 397 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 10 -71.29 -88.14 REMARK 500 ALA A 13 -75.38 -140.08 REMARK 500 ASP A 60 58.61 39.41 REMARK 500 TYR A 136 70.51 -156.22 REMARK 500 HIS A 223 -12.37 -147.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 467 O REMARK 620 2 HOH A 468 O 94.4 REMARK 620 3 HOH A 469 O 90.0 75.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC60081.2 RELATED DB: TARGETDB DBREF 3DNP A 1 287 UNP O07539 YHAX_BACSU 1 287 SEQADV 3DNP SER A -2 UNP O07539 EXPRESSION TAG SEQADV 3DNP ASN A -1 UNP O07539 EXPRESSION TAG SEQADV 3DNP ALA A 0 UNP O07539 EXPRESSION TAG SEQRES 1 A 290 SER ASN ALA MSE SER LYS GLN LEU LEU ALA LEU ASN ILE SEQRES 2 A 290 ASP GLY ALA LEU LEU ARG SER ASN GLY LYS ILE HIS GLN SEQRES 3 A 290 ALA THR LYS ASP ALA ILE GLU TYR VAL LYS LYS LYS GLY SEQRES 4 A 290 ILE TYR VAL THR LEU VAL THR ASN ARG HIS PHE ARG SER SEQRES 5 A 290 ALA GLN LYS ILE ALA LYS SER LEU LYS LEU ASP ALA LYS SEQRES 6 A 290 LEU ILE THR HIS SER GLY ALA TYR ILE ALA GLU LYS ILE SEQRES 7 A 290 ASP ALA PRO PHE PHE GLU LYS ARG ILE SER ASP ASP HIS SEQRES 8 A 290 THR PHE ASN ILE VAL GLN VAL LEU GLU SER TYR GLN CYS SEQRES 9 A 290 ASN ILE ARG LEU LEU HIS GLU LYS TYR SER ILE GLY ASN SEQRES 10 A 290 LYS LYS LYS VAL ASN SER ASN LEU LEU GLY LYS ALA LEU SEQRES 11 A 290 ILE HIS PRO SER ASP PRO ILE PHE TYR PRO VAL GLN PHE SEQRES 12 A 290 VAL GLU SER LEU SER ASP LEU LEU MSE ASP GLU PRO VAL SEQRES 13 A 290 SER ALA PRO VAL ILE GLU VAL TYR THR GLU HIS ASP ILE SEQRES 14 A 290 GLN HIS ASP ILE THR GLU THR ILE THR LYS ALA PHE PRO SEQRES 15 A 290 ALA VAL ASP VAL ILE ARG VAL ASN ASP GLU LYS LEU ASN SEQRES 16 A 290 ILE VAL PRO LYS GLY VAL SER LYS GLU ALA GLY LEU ALA SEQRES 17 A 290 LEU VAL ALA SER GLU LEU GLY LEU SER MSE ASP ASP VAL SEQRES 18 A 290 VAL ALA ILE GLY HIS GLN TYR ASP ASP LEU PRO MSE ILE SEQRES 19 A 290 GLU LEU ALA GLY LEU GLY VAL ALA MSE GLY ASN ALA VAL SEQRES 20 A 290 PRO GLU ILE LYS ARG LYS ALA ASP TRP VAL THR ARG SER SEQRES 21 A 290 ASN ASP GLU GLN GLY VAL ALA TYR MSE MSE LYS GLU TYR SEQRES 22 A 290 PHE ARG MSE GLN GLN ARG LYS GLY PHE LEU ASP LYS PHE SEQRES 23 A 290 HIS MSE LYS ARG MODRES 3DNP MSE A 149 MET SELENOMETHIONINE MODRES 3DNP MSE A 215 MET SELENOMETHIONINE MODRES 3DNP MSE A 230 MET SELENOMETHIONINE MODRES 3DNP MSE A 240 MET SELENOMETHIONINE MODRES 3DNP MSE A 266 MET SELENOMETHIONINE MODRES 3DNP MSE A 267 MET SELENOMETHIONINE MODRES 3DNP MSE A 273 MET SELENOMETHIONINE HET MSE A 149 8 HET MSE A 215 8 HET MSE A 230 8 HET MSE A 240 8 HET MSE A 266 13 HET MSE A 267 8 HET MSE A 273 8 HET MG A 301 1 HET EDO A 302 4 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *249(H2 O) HELIX 1 1 HIS A 22 LYS A 35 1 14 HELIX 2 2 HIS A 46 LEU A 57 1 12 HELIX 3 3 HIS A 66 GLY A 68 5 3 HELIX 4 4 SER A 85 SER A 98 1 14 HELIX 5 5 SER A 120 ALA A 126 1 7 HELIX 6 6 SER A 143 GLU A 151 1 9 HELIX 7 7 GLU A 163 ASP A 165 5 3 HELIX 8 8 ILE A 166 PHE A 178 1 13 HELIX 9 9 SER A 199 LEU A 211 1 13 HELIX 10 10 SER A 214 ASP A 216 5 3 HELIX 11 11 GLN A 224 ASP A 226 5 3 HELIX 12 12 ASP A 227 ALA A 234 1 8 HELIX 13 13 VAL A 244 ALA A 251 1 8 HELIX 14 14 GLN A 261 LYS A 277 1 17 SHEET 1 A 5 TYR A 38 LEU A 41 0 SHEET 2 A 5 LEU A 5 LEU A 8 1 N LEU A 6 O TYR A 38 SHEET 3 A 5 VAL A 218 GLY A 222 1 O VAL A 219 N ALA A 7 SHEET 4 A 5 LEU A 236 ALA A 239 1 O VAL A 238 N ALA A 220 SHEET 5 A 5 TRP A 253 VAL A 254 1 O TRP A 253 N ALA A 239 SHEET 1 B 3 LEU A 63 THR A 65 0 SHEET 2 B 3 TYR A 70 ALA A 72 -1 O ALA A 72 N LEU A 63 SHEET 3 B 3 PHE A 80 GLU A 81 -1 O PHE A 80 N ILE A 71 SHEET 1 C 6 VAL A 138 PHE A 140 0 SHEET 2 C 6 SER A 111 GLY A 113 1 N GLY A 113 O GLN A 139 SHEET 3 C 6 ASN A 102 LEU A 106 -1 N LEU A 105 O ILE A 112 SHEET 4 C 6 VAL A 157 TYR A 161 -1 O GLU A 159 N ARG A 104 SHEET 5 C 6 LYS A 190 PRO A 195 -1 O ILE A 193 N ILE A 158 SHEET 6 C 6 VAL A 181 ASN A 187 -1 N ILE A 184 O ASN A 192 LINK C LEU A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N ASP A 150 1555 1555 1.33 LINK C SER A 214 N MSE A 215 1555 1555 1.33 LINK C MSE A 215 N AASP A 216 1555 1555 1.34 LINK C MSE A 215 N BASP A 216 1555 1555 1.34 LINK C PRO A 229 N MSE A 230 1555 1555 1.34 LINK C MSE A 230 N ILE A 231 1555 1555 1.33 LINK C ALA A 239 N MSE A 240 1555 1555 1.34 LINK C MSE A 240 N GLY A 241 1555 1555 1.33 LINK C TYR A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N LYS A 268 1555 1555 1.33 LINK C ARG A 272 N MSE A 273 1555 1555 1.33 LINK C MSE A 273 N GLN A 274 1555 1555 1.33 LINK MG MG A 301 O HOH A 467 1555 1555 2.02 LINK MG MG A 301 O HOH A 468 1555 1555 2.08 LINK MG MG A 301 O HOH A 469 1555 1555 2.08 SITE 1 AC1 3 HOH A 467 HOH A 468 HOH A 469 SITE 1 AC2 8 ASN A 9 ILE A 10 ASP A 11 THR A 43 SITE 2 AC2 8 ASN A 44 LYS A 200 HOH A 396 HOH A 473 CRYST1 63.939 63.939 161.485 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015640 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015640 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006193 0.00000