data_3DQD # _entry.id 3DQD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DQD pdb_00003dqd 10.2210/pdb3dqd/pdb RCSB RCSB048357 ? ? WWPDB D_1000048357 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2023-08-30 5 'Structure model' 1 4 2023-11-15 6 'Structure model' 1 5 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Data collection' 7 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_ref_seq_dif 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' pdbx_initial_refinement_model 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 6 'Structure model' pdbx_entry_details 10 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_chem_comp_atom.atom_id' 6 5 'Structure model' '_chem_comp_bond.atom_id_2' 7 6 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.entry_id 3DQD _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-07-09 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1HUY unspecified 'CRYSTAL STRUCTURE OF CITRINE, AN IMPROVED YELLOW VARIANT OF GREEN FLUORESCENT PROTEIN' PDB 1YFP unspecified 'CRYSTAL STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP, P21212 SPACE GROUP' PDB 2YFP unspecified 'CRYSTAL STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP, P212121 SPACE GROUP' PDB 1F0B unspecified 'CRYSTAL STRUCTURE OF THE GREEN FLUORESCENT PROTEIN (GFP) VARIANT YFP-H148Q' PDB 1F09 unspecified 'CRYSTAL STRUCTURE OF THE GREEN FLUORESCENT PROTEIN (GFP) VARIANT YFP-H148Q WITH TWO BOUND IODIDES' PDB 3DPW unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 1: Structure 1 in a Series of 26 High Pressure Structures ; PDB 3DPX unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 5000 Atmospheres: Structure 26 in a Series of 26 High Pressure Structures ; PDB 3DPZ unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 3: Structure 25 in a Series of 26 High Pressure Structures ; PDB 3DQ1 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 2: Structure 24 in a Series of 26 High Pressure Structures ; PDB 3DQ2 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 1: Structure 23 in a Series of 26 High Pressure Structures ; PDB 3DQ3 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 2500 Atmospheres: Structure 22 in a Series of 26 High Pressure Structures ; PDB 3DQ4 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 2000 Atmospheres Number 2: Structure 20 in a Series of 26 High Pressure Structures ; PDB 3DQ5 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1960 Atmospheres: Structure 19 in a Series of 26 High Pressure Structures ; PDB 3DQ6 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 2: Structure 18 in a Series of 26 High Pressure Structures ; PDB 3DQ7 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 1: Structure 17 in a Series of 26 High Pressure Structures ; PDB 3DQ8 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 2: Structure 16 in a Series of 26 High Pressure Structures ; PDB 3DQ9 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 1: Structure 15 in a Series of 26 High Pressure Structures ; PDB 3DQA unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 4: Structure 14 in a Series of 26 High Pressure Structures ; PDB 3DQC unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 3: Structure 13 in a Series of 26 High Pressure Structures ; PDB 3DQE unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 1: Structure 11 in a Series of 26 High Pressure Structures ; PDB 3DQF unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 6: Structure 10 in a Series of 26 High Pressure Structures ; PDB 3DQH unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 5: Structure 9 in a Series of 26 High Pressure Structures ; PDB 3DQI unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 4: Structure 8 in a Series of 26 High Pressure Structures ; PDB 3DQJ unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 3: Structure 7 in a Series of 26 High Pressure Structures ; PDB 3DQK unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 2: Structure 6 in a Series of 26 High Pressure Structures ; PDB 3DQL unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 1: Structure 5 in a Series of 26 High Pressure Structures ; PDB 3DQM unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 750 Atmospheres: Structure 4 in a Series of 26 High Pressure Structures ; PDB 3DQN unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 500 Atmospheres: Structure 3 in a Series of 26 High Pressure Structures ; PDB 3DQO unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 2: Structure 2 in a Series of 26 High Pressure Structures ; PDB 3DQU unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 2000 Atmospheres Number 1: Structure 20 in a Series of 26 High Pressure Structures ; # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Barstow, B.' 1 'Kim, C.U.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.' Proc.Natl.Acad.Sci.Usa 105 13362 13366 2008 PNASA6 US 0027-8424 0040 ? 18768811 10.1073/pnas.0802252105 1 'High-pressure cooling of protein crystals without cryoprotectants.' 'Acta Crystallogr.,Sect.D' 61 881 890 2005 ABCRE6 DK 0907-4449 0766 ? 15983410 10.1107/S090744490500836X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Barstow, B.' 1 ? primary 'Ando, N.' 2 ? primary 'Kim, C.U.' 3 ? primary 'Gruner, S.M.' 4 ? 1 'Kim, C.U.' 5 ? 1 'Kapfer, R.' 6 ? 1 'Gruner, S.M.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Green fluorescent protein' 27393.916 1 ? 'S65G, V68L, Q69M, S72A, T203Y' ? ? 2 water nat water 18.015 260 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GDDPMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTF(CR2)LMCFAR YPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIM ADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSYQSALSKDPNEKRDHMVLLEFVTAAGITLGM DELYK ; _entity_poly.pdbx_seq_one_letter_code_can ;GDDPMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFGYGLMCFARYP DHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMAD KQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSYQSALSKDPNEKRDHMVLLEFVTAAGITLGMDE LYK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASP n 1 3 ASP n 1 4 PRO n 1 5 MET n 1 6 VAL n 1 7 SER n 1 8 LYS n 1 9 GLY n 1 10 GLU n 1 11 GLU n 1 12 LEU n 1 13 PHE n 1 14 THR n 1 15 GLY n 1 16 VAL n 1 17 VAL n 1 18 PRO n 1 19 ILE n 1 20 LEU n 1 21 VAL n 1 22 GLU n 1 23 LEU n 1 24 ASP n 1 25 GLY n 1 26 ASP n 1 27 VAL n 1 28 ASN n 1 29 GLY n 1 30 HIS n 1 31 LYS n 1 32 PHE n 1 33 SER n 1 34 VAL n 1 35 SER n 1 36 GLY n 1 37 GLU n 1 38 GLY n 1 39 GLU n 1 40 GLY n 1 41 ASP n 1 42 ALA n 1 43 THR n 1 44 TYR n 1 45 GLY n 1 46 LYS n 1 47 LEU n 1 48 THR n 1 49 LEU n 1 50 LYS n 1 51 PHE n 1 52 ILE n 1 53 CYS n 1 54 THR n 1 55 THR n 1 56 GLY n 1 57 LYS n 1 58 LEU n 1 59 PRO n 1 60 VAL n 1 61 PRO n 1 62 TRP n 1 63 PRO n 1 64 THR n 1 65 LEU n 1 66 VAL n 1 67 THR n 1 68 THR n 1 69 PHE n 1 70 CR2 n 1 71 LEU n 1 72 MET n 1 73 CYS n 1 74 PHE n 1 75 ALA n 1 76 ARG n 1 77 TYR n 1 78 PRO n 1 79 ASP n 1 80 HIS n 1 81 MET n 1 82 LYS n 1 83 GLN n 1 84 HIS n 1 85 ASP n 1 86 PHE n 1 87 PHE n 1 88 LYS n 1 89 SER n 1 90 ALA n 1 91 MET n 1 92 PRO n 1 93 GLU n 1 94 GLY n 1 95 TYR n 1 96 VAL n 1 97 GLN n 1 98 GLU n 1 99 ARG n 1 100 THR n 1 101 ILE n 1 102 PHE n 1 103 PHE n 1 104 LYS n 1 105 ASP n 1 106 ASP n 1 107 GLY n 1 108 ASN n 1 109 TYR n 1 110 LYS n 1 111 THR n 1 112 ARG n 1 113 ALA n 1 114 GLU n 1 115 VAL n 1 116 LYS n 1 117 PHE n 1 118 GLU n 1 119 GLY n 1 120 ASP n 1 121 THR n 1 122 LEU n 1 123 VAL n 1 124 ASN n 1 125 ARG n 1 126 ILE n 1 127 GLU n 1 128 LEU n 1 129 LYS n 1 130 GLY n 1 131 ILE n 1 132 ASP n 1 133 PHE n 1 134 LYS n 1 135 GLU n 1 136 ASP n 1 137 GLY n 1 138 ASN n 1 139 ILE n 1 140 LEU n 1 141 GLY n 1 142 HIS n 1 143 LYS n 1 144 LEU n 1 145 GLU n 1 146 TYR n 1 147 ASN n 1 148 TYR n 1 149 ASN n 1 150 SER n 1 151 HIS n 1 152 ASN n 1 153 VAL n 1 154 TYR n 1 155 ILE n 1 156 MET n 1 157 ALA n 1 158 ASP n 1 159 LYS n 1 160 GLN n 1 161 LYS n 1 162 ASN n 1 163 GLY n 1 164 ILE n 1 165 LYS n 1 166 VAL n 1 167 ASN n 1 168 PHE n 1 169 LYS n 1 170 ILE n 1 171 ARG n 1 172 HIS n 1 173 ASN n 1 174 ILE n 1 175 GLU n 1 176 ASP n 1 177 GLY n 1 178 SER n 1 179 VAL n 1 180 GLN n 1 181 LEU n 1 182 ALA n 1 183 ASP n 1 184 HIS n 1 185 TYR n 1 186 GLN n 1 187 GLN n 1 188 ASN n 1 189 THR n 1 190 PRO n 1 191 ILE n 1 192 GLY n 1 193 ASP n 1 194 GLY n 1 195 PRO n 1 196 VAL n 1 197 LEU n 1 198 LEU n 1 199 PRO n 1 200 ASP n 1 201 ASN n 1 202 HIS n 1 203 TYR n 1 204 LEU n 1 205 SER n 1 206 TYR n 1 207 GLN n 1 208 SER n 1 209 ALA n 1 210 LEU n 1 211 SER n 1 212 LYS n 1 213 ASP n 1 214 PRO n 1 215 ASN n 1 216 GLU n 1 217 LYS n 1 218 ARG n 1 219 ASP n 1 220 HIS n 1 221 MET n 1 222 VAL n 1 223 LEU n 1 224 LEU n 1 225 GLU n 1 226 PHE n 1 227 VAL n 1 228 THR n 1 229 ALA n 1 230 ALA n 1 231 GLY n 1 232 ILE n 1 233 THR n 1 234 LEU n 1 235 GLY n 1 236 MET n 1 237 ASP n 1 238 GLU n 1 239 LEU n 1 240 TYR n 1 241 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Jellyfish _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene GFP _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aequorea victoria' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6100 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CR2 'L-peptide linking' n '{(4Z)-2-(aminomethyl)-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid' 'CHROMOPHORE (GLY-TYR-GLY)' 'C13 H13 N3 O4' 275.260 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 ? ? ? A . n A 1 2 ASP 2 -3 ? ? ? A . n A 1 3 ASP 3 -2 -2 ASP ASP A . n A 1 4 PRO 4 -1 -1 PRO PRO A . n A 1 5 MET 5 0 0 MET MET A . n A 1 6 VAL 6 1 1 VAL VAL A . n A 1 7 SER 7 2 2 SER SER A . n A 1 8 LYS 8 3 3 LYS LYS A . n A 1 9 GLY 9 4 4 GLY GLY A . n A 1 10 GLU 10 5 5 GLU GLU A . n A 1 11 GLU 11 6 6 GLU GLU A . n A 1 12 LEU 12 7 7 LEU LEU A . n A 1 13 PHE 13 8 8 PHE PHE A . n A 1 14 THR 14 9 9 THR THR A . n A 1 15 GLY 15 10 10 GLY GLY A . n A 1 16 VAL 16 11 11 VAL VAL A . n A 1 17 VAL 17 12 12 VAL VAL A . n A 1 18 PRO 18 13 13 PRO PRO A . n A 1 19 ILE 19 14 14 ILE ILE A . n A 1 20 LEU 20 15 15 LEU LEU A . n A 1 21 VAL 21 16 16 VAL VAL A . n A 1 22 GLU 22 17 17 GLU GLU A . n A 1 23 LEU 23 18 18 LEU LEU A . n A 1 24 ASP 24 19 19 ASP ASP A . n A 1 25 GLY 25 20 20 GLY GLY A . n A 1 26 ASP 26 21 21 ASP ASP A . n A 1 27 VAL 27 22 22 VAL VAL A . n A 1 28 ASN 28 23 23 ASN ASN A . n A 1 29 GLY 29 24 24 GLY GLY A . n A 1 30 HIS 30 25 25 HIS HIS A . n A 1 31 LYS 31 26 26 LYS LYS A . n A 1 32 PHE 32 27 27 PHE PHE A . n A 1 33 SER 33 28 28 SER SER A . n A 1 34 VAL 34 29 29 VAL VAL A . n A 1 35 SER 35 30 30 SER SER A . n A 1 36 GLY 36 31 31 GLY GLY A . n A 1 37 GLU 37 32 32 GLU GLU A . n A 1 38 GLY 38 33 33 GLY GLY A . n A 1 39 GLU 39 34 34 GLU GLU A . n A 1 40 GLY 40 35 35 GLY GLY A . n A 1 41 ASP 41 36 36 ASP ASP A . n A 1 42 ALA 42 37 37 ALA ALA A . n A 1 43 THR 43 38 38 THR THR A . n A 1 44 TYR 44 39 39 TYR TYR A . n A 1 45 GLY 45 40 40 GLY GLY A . n A 1 46 LYS 46 41 41 LYS LYS A . n A 1 47 LEU 47 42 42 LEU LEU A . n A 1 48 THR 48 43 43 THR THR A . n A 1 49 LEU 49 44 44 LEU LEU A . n A 1 50 LYS 50 45 45 LYS LYS A . n A 1 51 PHE 51 46 46 PHE PHE A . n A 1 52 ILE 52 47 47 ILE ILE A . n A 1 53 CYS 53 48 48 CYS CYS A . n A 1 54 THR 54 49 49 THR THR A . n A 1 55 THR 55 50 50 THR THR A . n A 1 56 GLY 56 51 51 GLY GLY A . n A 1 57 LYS 57 52 52 LYS LYS A . n A 1 58 LEU 58 53 53 LEU LEU A . n A 1 59 PRO 59 54 54 PRO PRO A . n A 1 60 VAL 60 55 55 VAL VAL A . n A 1 61 PRO 61 56 56 PRO PRO A . n A 1 62 TRP 62 57 57 TRP TRP A . n A 1 63 PRO 63 58 58 PRO PRO A . n A 1 64 THR 64 59 59 THR THR A . n A 1 65 LEU 65 60 60 LEU LEU A . n A 1 66 VAL 66 61 61 VAL VAL A . n A 1 67 THR 67 62 62 THR THR A . n A 1 68 THR 68 63 63 THR THR A . n A 1 69 PHE 69 64 64 PHE PHE A . n A 1 70 CR2 70 66 66 CR2 CR2 A . n A 1 71 LEU 71 68 68 LEU LEU A . n A 1 72 MET 72 69 69 MET MET A . n A 1 73 CYS 73 70 70 CYS CYS A . n A 1 74 PHE 74 71 71 PHE PHE A . n A 1 75 ALA 75 72 72 ALA ALA A . n A 1 76 ARG 76 73 73 ARG ARG A . n A 1 77 TYR 77 74 74 TYR TYR A . n A 1 78 PRO 78 75 75 PRO PRO A . n A 1 79 ASP 79 76 76 ASP ASP A . n A 1 80 HIS 80 77 77 HIS HIS A . n A 1 81 MET 81 78 78 MET MET A . n A 1 82 LYS 82 79 79 LYS LYS A . n A 1 83 GLN 83 80 80 GLN GLN A . n A 1 84 HIS 84 81 81 HIS HIS A . n A 1 85 ASP 85 82 82 ASP ASP A . n A 1 86 PHE 86 83 83 PHE PHE A . n A 1 87 PHE 87 84 84 PHE PHE A . n A 1 88 LYS 88 85 85 LYS LYS A . n A 1 89 SER 89 86 86 SER SER A . n A 1 90 ALA 90 87 87 ALA ALA A . n A 1 91 MET 91 88 88 MET MET A . n A 1 92 PRO 92 89 89 PRO PRO A . n A 1 93 GLU 93 90 90 GLU GLU A . n A 1 94 GLY 94 91 91 GLY GLY A . n A 1 95 TYR 95 92 92 TYR TYR A . n A 1 96 VAL 96 93 93 VAL VAL A . n A 1 97 GLN 97 94 94 GLN GLN A . n A 1 98 GLU 98 95 95 GLU GLU A . n A 1 99 ARG 99 96 96 ARG ARG A . n A 1 100 THR 100 97 97 THR THR A . n A 1 101 ILE 101 98 98 ILE ILE A . n A 1 102 PHE 102 99 99 PHE PHE A . n A 1 103 PHE 103 100 100 PHE PHE A . n A 1 104 LYS 104 101 101 LYS LYS A . n A 1 105 ASP 105 102 102 ASP ASP A . n A 1 106 ASP 106 103 103 ASP ASP A . n A 1 107 GLY 107 104 104 GLY GLY A . n A 1 108 ASN 108 105 105 ASN ASN A . n A 1 109 TYR 109 106 106 TYR TYR A . n A 1 110 LYS 110 107 107 LYS LYS A . n A 1 111 THR 111 108 108 THR THR A . n A 1 112 ARG 112 109 109 ARG ARG A . n A 1 113 ALA 113 110 110 ALA ALA A . n A 1 114 GLU 114 111 111 GLU GLU A . n A 1 115 VAL 115 112 112 VAL VAL A . n A 1 116 LYS 116 113 113 LYS LYS A . n A 1 117 PHE 117 114 114 PHE PHE A . n A 1 118 GLU 118 115 115 GLU GLU A . n A 1 119 GLY 119 116 116 GLY GLY A . n A 1 120 ASP 120 117 117 ASP ASP A . n A 1 121 THR 121 118 118 THR THR A . n A 1 122 LEU 122 119 119 LEU LEU A . n A 1 123 VAL 123 120 120 VAL VAL A . n A 1 124 ASN 124 121 121 ASN ASN A . n A 1 125 ARG 125 122 122 ARG ARG A . n A 1 126 ILE 126 123 123 ILE ILE A . n A 1 127 GLU 127 124 124 GLU GLU A . n A 1 128 LEU 128 125 125 LEU LEU A . n A 1 129 LYS 129 126 126 LYS LYS A . n A 1 130 GLY 130 127 127 GLY GLY A . n A 1 131 ILE 131 128 128 ILE ILE A . n A 1 132 ASP 132 129 129 ASP ASP A . n A 1 133 PHE 133 130 130 PHE PHE A . n A 1 134 LYS 134 131 131 LYS LYS A . n A 1 135 GLU 135 132 132 GLU GLU A . n A 1 136 ASP 136 133 133 ASP ASP A . n A 1 137 GLY 137 134 134 GLY GLY A . n A 1 138 ASN 138 135 135 ASN ASN A . n A 1 139 ILE 139 136 136 ILE ILE A . n A 1 140 LEU 140 137 137 LEU LEU A . n A 1 141 GLY 141 138 138 GLY GLY A . n A 1 142 HIS 142 139 139 HIS HIS A . n A 1 143 LYS 143 140 140 LYS LYS A . n A 1 144 LEU 144 141 141 LEU LEU A . n A 1 145 GLU 145 142 142 GLU GLU A . n A 1 146 TYR 146 143 143 TYR TYR A . n A 1 147 ASN 147 144 144 ASN ASN A . n A 1 148 TYR 148 145 145 TYR TYR A . n A 1 149 ASN 149 146 146 ASN ASN A . n A 1 150 SER 150 147 147 SER SER A . n A 1 151 HIS 151 148 148 HIS HIS A . n A 1 152 ASN 152 149 149 ASN ASN A . n A 1 153 VAL 153 150 150 VAL VAL A . n A 1 154 TYR 154 151 151 TYR TYR A . n A 1 155 ILE 155 152 152 ILE ILE A . n A 1 156 MET 156 153 153 MET MET A . n A 1 157 ALA 157 154 154 ALA ALA A . n A 1 158 ASP 158 155 155 ASP ASP A . n A 1 159 LYS 159 156 156 LYS LYS A . n A 1 160 GLN 160 157 157 GLN GLN A . n A 1 161 LYS 161 158 158 LYS LYS A . n A 1 162 ASN 162 159 159 ASN ASN A . n A 1 163 GLY 163 160 160 GLY GLY A . n A 1 164 ILE 164 161 161 ILE ILE A . n A 1 165 LYS 165 162 162 LYS LYS A . n A 1 166 VAL 166 163 163 VAL VAL A . n A 1 167 ASN 167 164 164 ASN ASN A . n A 1 168 PHE 168 165 165 PHE PHE A . n A 1 169 LYS 169 166 166 LYS LYS A . n A 1 170 ILE 170 167 167 ILE ILE A . n A 1 171 ARG 171 168 168 ARG ARG A . n A 1 172 HIS 172 169 169 HIS HIS A . n A 1 173 ASN 173 170 170 ASN ASN A . n A 1 174 ILE 174 171 171 ILE ILE A . n A 1 175 GLU 175 172 172 GLU GLU A . n A 1 176 ASP 176 173 173 ASP ASP A . n A 1 177 GLY 177 174 174 GLY GLY A . n A 1 178 SER 178 175 175 SER SER A . n A 1 179 VAL 179 176 176 VAL VAL A . n A 1 180 GLN 180 177 177 GLN GLN A . n A 1 181 LEU 181 178 178 LEU LEU A . n A 1 182 ALA 182 179 179 ALA ALA A . n A 1 183 ASP 183 180 180 ASP ASP A . n A 1 184 HIS 184 181 181 HIS HIS A . n A 1 185 TYR 185 182 182 TYR TYR A . n A 1 186 GLN 186 183 183 GLN GLN A . n A 1 187 GLN 187 184 184 GLN GLN A . n A 1 188 ASN 188 185 185 ASN ASN A . n A 1 189 THR 189 186 186 THR THR A . n A 1 190 PRO 190 187 187 PRO PRO A . n A 1 191 ILE 191 188 188 ILE ILE A . n A 1 192 GLY 192 189 189 GLY GLY A . n A 1 193 ASP 193 190 190 ASP ASP A . n A 1 194 GLY 194 191 191 GLY GLY A . n A 1 195 PRO 195 192 192 PRO PRO A . n A 1 196 VAL 196 193 193 VAL VAL A . n A 1 197 LEU 197 194 194 LEU LEU A . n A 1 198 LEU 198 195 195 LEU LEU A . n A 1 199 PRO 199 196 196 PRO PRO A . n A 1 200 ASP 200 197 197 ASP ASP A . n A 1 201 ASN 201 198 198 ASN ASN A . n A 1 202 HIS 202 199 199 HIS HIS A . n A 1 203 TYR 203 200 200 TYR TYR A . n A 1 204 LEU 204 201 201 LEU LEU A . n A 1 205 SER 205 202 202 SER SER A . n A 1 206 TYR 206 203 203 TYR TYR A . n A 1 207 GLN 207 204 204 GLN GLN A . n A 1 208 SER 208 205 205 SER SER A . n A 1 209 ALA 209 206 206 ALA ALA A . n A 1 210 LEU 210 207 207 LEU LEU A . n A 1 211 SER 211 208 208 SER SER A . n A 1 212 LYS 212 209 209 LYS LYS A . n A 1 213 ASP 213 210 210 ASP ASP A . n A 1 214 PRO 214 211 211 PRO PRO A . n A 1 215 ASN 215 212 212 ASN ASN A . n A 1 216 GLU 216 213 213 GLU GLU A . n A 1 217 LYS 217 214 214 LYS LYS A . n A 1 218 ARG 218 215 215 ARG ARG A . n A 1 219 ASP 219 216 216 ASP ASP A . n A 1 220 HIS 220 217 217 HIS HIS A . n A 1 221 MET 221 218 218 MET MET A . n A 1 222 VAL 222 219 219 VAL VAL A . n A 1 223 LEU 223 220 220 LEU LEU A . n A 1 224 LEU 224 221 221 LEU LEU A . n A 1 225 GLU 225 222 222 GLU GLU A . n A 1 226 PHE 226 223 223 PHE PHE A . n A 1 227 VAL 227 224 224 VAL VAL A . n A 1 228 THR 228 225 225 THR THR A . n A 1 229 ALA 229 226 226 ALA ALA A . n A 1 230 ALA 230 227 227 ALA ALA A . n A 1 231 GLY 231 228 228 GLY GLY A . n A 1 232 ILE 232 229 229 ILE ILE A . n A 1 233 THR 233 230 230 THR THR A . n A 1 234 LEU 234 231 ? ? ? A . n A 1 235 GLY 235 232 ? ? ? A . n A 1 236 MET 236 233 ? ? ? A . n A 1 237 ASP 237 234 ? ? ? A . n A 1 238 GLU 238 235 ? ? ? A . n A 1 239 LEU 239 236 ? ? ? A . n A 1 240 TYR 240 237 ? ? ? A . n A 1 241 LYS 241 238 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 239 1 HOH HOH A . B 2 HOH 2 240 2 HOH HOH A . B 2 HOH 3 241 3 HOH HOH A . B 2 HOH 4 242 4 HOH HOH A . B 2 HOH 5 243 5 HOH HOH A . B 2 HOH 6 244 6 HOH HOH A . B 2 HOH 7 245 7 HOH HOH A . B 2 HOH 8 246 8 HOH HOH A . B 2 HOH 9 247 9 HOH HOH A . B 2 HOH 10 248 10 HOH HOH A . B 2 HOH 11 249 11 HOH HOH A . B 2 HOH 12 250 12 HOH HOH A . B 2 HOH 13 251 13 HOH HOH A . B 2 HOH 14 252 14 HOH HOH A . B 2 HOH 15 253 15 HOH HOH A . B 2 HOH 16 254 16 HOH HOH A . B 2 HOH 17 255 17 HOH HOH A . B 2 HOH 18 256 18 HOH HOH A . B 2 HOH 19 257 19 HOH HOH A . B 2 HOH 20 258 20 HOH HOH A . B 2 HOH 21 259 21 HOH HOH A . B 2 HOH 22 260 22 HOH HOH A . B 2 HOH 23 261 23 HOH HOH A . B 2 HOH 24 262 24 HOH HOH A . B 2 HOH 25 263 25 HOH HOH A . B 2 HOH 26 264 26 HOH HOH A . B 2 HOH 27 265 27 HOH HOH A . B 2 HOH 28 266 28 HOH HOH A . B 2 HOH 29 267 29 HOH HOH A . B 2 HOH 30 268 30 HOH HOH A . B 2 HOH 31 269 31 HOH HOH A . B 2 HOH 32 270 32 HOH HOH A . B 2 HOH 33 271 33 HOH HOH A . B 2 HOH 34 272 34 HOH HOH A . B 2 HOH 35 273 35 HOH HOH A . B 2 HOH 36 274 36 HOH HOH A . B 2 HOH 37 275 37 HOH HOH A . B 2 HOH 38 276 38 HOH HOH A . B 2 HOH 39 277 39 HOH HOH A . B 2 HOH 40 278 40 HOH HOH A . B 2 HOH 41 279 41 HOH HOH A . B 2 HOH 42 280 42 HOH HOH A . B 2 HOH 43 281 43 HOH HOH A . B 2 HOH 44 282 44 HOH HOH A . B 2 HOH 45 283 45 HOH HOH A . B 2 HOH 46 284 46 HOH HOH A . B 2 HOH 47 285 47 HOH HOH A . B 2 HOH 48 286 48 HOH HOH A . B 2 HOH 49 287 49 HOH HOH A . B 2 HOH 50 288 50 HOH HOH A . B 2 HOH 51 289 51 HOH HOH A . B 2 HOH 52 290 52 HOH HOH A . B 2 HOH 53 291 53 HOH HOH A . B 2 HOH 54 292 54 HOH HOH A . B 2 HOH 55 293 55 HOH HOH A . B 2 HOH 56 294 56 HOH HOH A . B 2 HOH 57 295 57 HOH HOH A . B 2 HOH 58 296 58 HOH HOH A . B 2 HOH 59 297 59 HOH HOH A . B 2 HOH 60 298 60 HOH HOH A . B 2 HOH 61 299 61 HOH HOH A . B 2 HOH 62 300 62 HOH HOH A . B 2 HOH 63 301 63 HOH HOH A . B 2 HOH 64 302 64 HOH HOH A . B 2 HOH 65 303 65 HOH HOH A . B 2 HOH 66 304 66 HOH HOH A . B 2 HOH 67 305 67 HOH HOH A . B 2 HOH 68 306 68 HOH HOH A . B 2 HOH 69 307 69 HOH HOH A . B 2 HOH 70 308 70 HOH HOH A . B 2 HOH 71 309 71 HOH HOH A . B 2 HOH 72 310 72 HOH HOH A . B 2 HOH 73 311 73 HOH HOH A . B 2 HOH 74 312 74 HOH HOH A . B 2 HOH 75 313 75 HOH HOH A . B 2 HOH 76 314 76 HOH HOH A . B 2 HOH 77 315 77 HOH HOH A . B 2 HOH 78 316 78 HOH HOH A . B 2 HOH 79 317 79 HOH HOH A . B 2 HOH 80 318 80 HOH HOH A . B 2 HOH 81 319 81 HOH HOH A . B 2 HOH 82 320 82 HOH HOH A . B 2 HOH 83 321 83 HOH HOH A . B 2 HOH 84 322 84 HOH HOH A . B 2 HOH 85 323 85 HOH HOH A . B 2 HOH 86 324 86 HOH HOH A . B 2 HOH 87 325 87 HOH HOH A . B 2 HOH 88 326 88 HOH HOH A . B 2 HOH 89 327 89 HOH HOH A . B 2 HOH 90 328 90 HOH HOH A . B 2 HOH 91 329 91 HOH HOH A . B 2 HOH 92 330 92 HOH HOH A . B 2 HOH 93 331 93 HOH HOH A . B 2 HOH 94 332 94 HOH HOH A . B 2 HOH 95 333 95 HOH HOH A . B 2 HOH 96 334 96 HOH HOH A . B 2 HOH 97 335 97 HOH HOH A . B 2 HOH 98 336 98 HOH HOH A . B 2 HOH 99 337 99 HOH HOH A . B 2 HOH 100 338 100 HOH HOH A . B 2 HOH 101 339 101 HOH HOH A . B 2 HOH 102 340 102 HOH HOH A . B 2 HOH 103 341 103 HOH HOH A . B 2 HOH 104 342 104 HOH HOH A . B 2 HOH 105 343 105 HOH HOH A . B 2 HOH 106 344 106 HOH HOH A . B 2 HOH 107 345 107 HOH HOH A . B 2 HOH 108 346 108 HOH HOH A . B 2 HOH 109 347 109 HOH HOH A . B 2 HOH 110 348 110 HOH HOH A . B 2 HOH 111 349 111 HOH HOH A . B 2 HOH 112 350 112 HOH HOH A . B 2 HOH 113 351 113 HOH HOH A . B 2 HOH 114 352 114 HOH HOH A . B 2 HOH 115 353 115 HOH HOH A . B 2 HOH 116 354 116 HOH HOH A . B 2 HOH 117 355 117 HOH HOH A . B 2 HOH 118 356 118 HOH HOH A . B 2 HOH 119 357 119 HOH HOH A . B 2 HOH 120 358 120 HOH HOH A . B 2 HOH 121 359 121 HOH HOH A . B 2 HOH 122 360 122 HOH HOH A . B 2 HOH 123 361 123 HOH HOH A . B 2 HOH 124 362 124 HOH HOH A . B 2 HOH 125 363 125 HOH HOH A . B 2 HOH 126 364 126 HOH HOH A . B 2 HOH 127 365 127 HOH HOH A . B 2 HOH 128 366 128 HOH HOH A . B 2 HOH 129 367 129 HOH HOH A . B 2 HOH 130 368 130 HOH HOH A . B 2 HOH 131 369 131 HOH HOH A . B 2 HOH 132 370 132 HOH HOH A . B 2 HOH 133 371 133 HOH HOH A . B 2 HOH 134 372 134 HOH HOH A . B 2 HOH 135 373 135 HOH HOH A . B 2 HOH 136 374 136 HOH HOH A . B 2 HOH 137 375 137 HOH HOH A . B 2 HOH 138 376 138 HOH HOH A . B 2 HOH 139 377 139 HOH HOH A . B 2 HOH 140 378 140 HOH HOH A . B 2 HOH 141 379 141 HOH HOH A . B 2 HOH 142 380 142 HOH HOH A . B 2 HOH 143 381 143 HOH HOH A . B 2 HOH 144 382 144 HOH HOH A . B 2 HOH 145 383 145 HOH HOH A . B 2 HOH 146 384 146 HOH HOH A . B 2 HOH 147 385 147 HOH HOH A . B 2 HOH 148 386 148 HOH HOH A . B 2 HOH 149 387 149 HOH HOH A . B 2 HOH 150 388 150 HOH HOH A . B 2 HOH 151 389 151 HOH HOH A . B 2 HOH 152 390 152 HOH HOH A . B 2 HOH 153 391 153 HOH HOH A . B 2 HOH 154 392 154 HOH HOH A . B 2 HOH 155 393 155 HOH HOH A . B 2 HOH 156 394 156 HOH HOH A . B 2 HOH 157 395 157 HOH HOH A . B 2 HOH 158 396 158 HOH HOH A . B 2 HOH 159 397 159 HOH HOH A . B 2 HOH 160 398 160 HOH HOH A . B 2 HOH 161 399 161 HOH HOH A . B 2 HOH 162 400 162 HOH HOH A . B 2 HOH 163 401 163 HOH HOH A . B 2 HOH 164 402 164 HOH HOH A . B 2 HOH 165 403 165 HOH HOH A . B 2 HOH 166 404 166 HOH HOH A . B 2 HOH 167 405 167 HOH HOH A . B 2 HOH 168 406 168 HOH HOH A . B 2 HOH 169 407 169 HOH HOH A . B 2 HOH 170 408 170 HOH HOH A . B 2 HOH 171 409 171 HOH HOH A . B 2 HOH 172 410 172 HOH HOH A . B 2 HOH 173 411 173 HOH HOH A . B 2 HOH 174 412 174 HOH HOH A . B 2 HOH 175 413 175 HOH HOH A . B 2 HOH 176 414 176 HOH HOH A . B 2 HOH 177 415 177 HOH HOH A . B 2 HOH 178 416 178 HOH HOH A . B 2 HOH 179 417 179 HOH HOH A . B 2 HOH 180 418 180 HOH HOH A . B 2 HOH 181 419 181 HOH HOH A . B 2 HOH 182 420 182 HOH HOH A . B 2 HOH 183 421 183 HOH HOH A . B 2 HOH 184 422 184 HOH HOH A . B 2 HOH 185 423 185 HOH HOH A . B 2 HOH 186 424 186 HOH HOH A . B 2 HOH 187 425 187 HOH HOH A . B 2 HOH 188 426 188 HOH HOH A . B 2 HOH 189 427 189 HOH HOH A . B 2 HOH 190 428 190 HOH HOH A . B 2 HOH 191 429 191 HOH HOH A . B 2 HOH 192 430 192 HOH HOH A . B 2 HOH 193 431 193 HOH HOH A . B 2 HOH 194 432 194 HOH HOH A . B 2 HOH 195 433 195 HOH HOH A . B 2 HOH 196 434 196 HOH HOH A . B 2 HOH 197 435 197 HOH HOH A . B 2 HOH 198 436 198 HOH HOH A . B 2 HOH 199 437 199 HOH HOH A . B 2 HOH 200 438 200 HOH HOH A . B 2 HOH 201 439 201 HOH HOH A . B 2 HOH 202 440 202 HOH HOH A . B 2 HOH 203 441 203 HOH HOH A . B 2 HOH 204 442 204 HOH HOH A . B 2 HOH 205 443 205 HOH HOH A . B 2 HOH 206 444 206 HOH HOH A . B 2 HOH 207 445 207 HOH HOH A . B 2 HOH 208 446 208 HOH HOH A . B 2 HOH 209 447 209 HOH HOH A . B 2 HOH 210 448 210 HOH HOH A . B 2 HOH 211 449 211 HOH HOH A . B 2 HOH 212 450 212 HOH HOH A . B 2 HOH 213 451 213 HOH HOH A . B 2 HOH 214 452 214 HOH HOH A . B 2 HOH 215 453 215 HOH HOH A . B 2 HOH 216 454 216 HOH HOH A . B 2 HOH 217 455 217 HOH HOH A . B 2 HOH 218 456 218 HOH HOH A . B 2 HOH 219 457 219 HOH HOH A . B 2 HOH 220 458 220 HOH HOH A . B 2 HOH 221 459 221 HOH HOH A . B 2 HOH 222 460 222 HOH HOH A . B 2 HOH 223 461 223 HOH HOH A . B 2 HOH 224 462 224 HOH HOH A . B 2 HOH 225 463 225 HOH HOH A . B 2 HOH 226 464 226 HOH HOH A . B 2 HOH 227 465 227 HOH HOH A . B 2 HOH 228 466 228 HOH HOH A . B 2 HOH 229 467 229 HOH HOH A . B 2 HOH 230 468 230 HOH HOH A . B 2 HOH 231 469 231 HOH HOH A . B 2 HOH 232 470 232 HOH HOH A . B 2 HOH 233 471 233 HOH HOH A . B 2 HOH 234 472 234 HOH HOH A . B 2 HOH 235 473 235 HOH HOH A . B 2 HOH 236 474 236 HOH HOH A . B 2 HOH 237 475 237 HOH HOH A . B 2 HOH 238 476 238 HOH HOH A . B 2 HOH 239 477 239 HOH HOH A . B 2 HOH 240 478 240 HOH HOH A . B 2 HOH 241 479 241 HOH HOH A . B 2 HOH 242 480 242 HOH HOH A . B 2 HOH 243 481 243 HOH HOH A . B 2 HOH 244 482 244 HOH HOH A . B 2 HOH 245 483 245 HOH HOH A . B 2 HOH 246 484 246 HOH HOH A . B 2 HOH 247 485 247 HOH HOH A . B 2 HOH 248 486 248 HOH HOH A . B 2 HOH 249 487 249 HOH HOH A . B 2 HOH 250 488 250 HOH HOH A . B 2 HOH 251 489 251 HOH HOH A . B 2 HOH 252 490 252 HOH HOH A . B 2 HOH 253 491 253 HOH HOH A . B 2 HOH 254 492 254 HOH HOH A . B 2 HOH 255 493 255 HOH HOH A . B 2 HOH 256 494 256 HOH HOH A . B 2 HOH 257 495 257 HOH HOH A . B 2 HOH 258 496 258 HOH HOH A . B 2 HOH 259 497 259 HOH HOH A . B 2 HOH 260 498 260 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA 3.2.25 21/9/2006 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 1 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 2 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 5 DPS . ? ? ? ? 'data reduction' ? ? ? 6 # _cell.entry_id 3DQD _cell.length_a 51.193 _cell.length_b 62.977 _cell.length_c 71.128 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DQD _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3DQD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_percent_sol 41.23 _exptl_crystal.description ;Crystal structure of the Yellow Fluorescent Protein Citrine frozen at 1250 atmospheres. Structure 12 of 26 in a series of high pressure structures. Crystal was high pressure cryo-cooled at 1250 atmospheres in helium gas. Crystal temperature was maintained below 100 K prior to data collection at ambient pressure and 100 K. High pressure cryo-cooling procedure is described in secondary citation 1 (Kim et al., Acta Cryst. D61:881-890). Structure referred to as citrine1250_2 in primary citation (Barstow et al.). ; _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2005-11-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) DOUBLE CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F2' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 3DQD _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.72 _reflns.d_resolution_high 1.40 _reflns.number_obs 27256 _reflns.number_all ? _reflns.percent_possible_obs 59.3 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_Rsym_value 0.064 _reflns.pdbx_netI_over_sigmaI 10.300 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.600 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 100.00 _reflns_shell.Rmerge_I_obs 0.303 _reflns_shell.pdbx_Rsym_value 0.303 _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 4.70 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3DQD _refine.ls_number_reflns_obs 25884 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 59.31 _refine.ls_R_factor_obs 0.21605 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21271 _refine.ls_R_factor_R_free 0.28004 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1355 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.00 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.919 _refine.B_iso_mean 27.484 _refine.aniso_B[1][1] -0.06 _refine.aniso_B[2][2] -0.09 _refine.aniso_B[3][3] 0.15 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. This structure is refined slightly differently from the corresponding structure used for analysis in the primary citation (Barstow et al.). However, analysis of the deformation motion of the chromophore under pressure in this sequence of deposited structures produces an identical deformation trend. For copies of the structures as used in the analysis in the primary citation please contact the authors. ; _refine.pdbx_starting_model 'PDB ENTRY 1HUY WITH RESIDUE 80 MUTATED TO GLUTAMINE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.125 _refine.pdbx_overall_ESU_R_Free 0.136 _refine.overall_SU_ML 0.102 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.711 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1850 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 260 _refine_hist.number_atoms_total 2110 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.025 0.022 ? 1896 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.251 1.966 ? 2559 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.212 5.000 ? 228 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.629 25.109 ? 92 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.993 15.000 ? 324 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.143 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.150 0.200 ? 272 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1451 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.262 0.200 ? 974 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.306 0.200 ? 1218 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.186 0.200 ? 206 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.215 0.200 ? 44 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.214 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.812 1.500 ? 1171 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.116 2.000 ? 1841 'X-RAY DIFFRACTION' ? r_scbond_it 3.856 3.000 ? 816 'X-RAY DIFFRACTION' ? r_scangle_it 5.592 4.500 ? 718 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.400 _refine_ls_shell.d_res_low 1.436 _refine_ls_shell.number_reflns_R_work 1 _refine_ls_shell.R_factor_R_work 0.552 _refine_ls_shell.percent_reflns_obs 0.06 _refine_ls_shell.R_factor_R_free 0.789 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 1 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DQD _struct.title ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 2: Structure 12 in a Series of 26 High Pressure Structures ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DQD _struct_keywords.text ;Yellow Fluorescent Protein, beta barrel, chromophore, fluorescent protein, high pressure, Luminescence, Photoprotein, LUMINESCENT PROTEIN ; _struct_keywords.pdbx_keywords 'LUMINESCENT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GFP_AEQVI _struct_ref.pdbx_db_accession P42212 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQH DFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGI KVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITHGMDELYK ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DQD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 241 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P42212 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 238 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 238 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DQD GLY A 1 ? UNP P42212 ? ? 'expression tag' -4 1 1 3DQD ASP A 2 ? UNP P42212 ? ? 'expression tag' -3 2 1 3DQD ASP A 3 ? UNP P42212 ? ? 'expression tag' -2 3 1 3DQD PRO A 4 ? UNP P42212 ? ? 'expression tag' -1 4 1 3DQD MET A 5 ? UNP P42212 ? ? 'expression tag' 0 5 1 3DQD VAL A 6 ? UNP P42212 ? ? 'expression tag' 1 6 1 3DQD CR2 A 70 ? UNP P42212 SER 65 chromophore 66 7 1 3DQD CR2 A 70 ? UNP P42212 TYR 66 chromophore 66 8 1 3DQD CR2 A 70 ? UNP P42212 GLY 67 chromophore 66 9 1 3DQD LEU A 71 ? UNP P42212 VAL 68 'engineered mutation' 68 10 1 3DQD MET A 72 ? UNP P42212 GLN 69 'engineered mutation' 69 11 1 3DQD ALA A 75 ? UNP P42212 SER 72 'engineered mutation' 72 12 1 3DQD TYR A 206 ? UNP P42212 THR 203 'engineered mutation' 203 13 1 3DQD LEU A 234 ? UNP P42212 HIS 231 'engineered mutation' 231 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 3 ? THR A 14 ? ASP A -2 THR A 9 1 ? 12 HELX_P HELX_P2 2 ALA A 42 ? TYR A 44 ? ALA A 37 TYR A 39 5 ? 3 HELX_P HELX_P3 3 PRO A 61 ? VAL A 66 ? PRO A 56 VAL A 61 5 ? 6 HELX_P HELX_P4 4 LEU A 71 ? ALA A 75 ? LEU A 68 ALA A 72 5 ? 5 HELX_P HELX_P5 5 PRO A 78 ? HIS A 84 ? PRO A 75 HIS A 81 5 ? 7 HELX_P HELX_P6 6 ASP A 85 ? ALA A 90 ? ASP A 82 ALA A 87 1 ? 6 HELX_P HELX_P7 7 LYS A 159 ? ASN A 162 ? LYS A 156 ASN A 159 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PHE 69 C ? ? ? 1_555 A CR2 70 N1 ? ? A PHE 64 A CR2 66 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A CR2 70 C3 ? ? ? 1_555 A LEU 71 N ? ? A CR2 66 A LEU 68 1_555 ? ? ? ? ? ? ? 1.301 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CR2 _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 70 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id . _pdbx_modification_feature.modified_residue_label_asym_id . _pdbx_modification_feature.modified_residue_label_seq_id . _pdbx_modification_feature.modified_residue_label_alt_id . _pdbx_modification_feature.auth_comp_id CR2 _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 66 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id . _pdbx_modification_feature.modified_residue_auth_asym_id . _pdbx_modification_feature.modified_residue_auth_seq_id . _pdbx_modification_feature.modified_residue_PDB_ins_code . _pdbx_modification_feature.modified_residue_symmetry . _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id 'GLY, TYR, GLY' _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id CR2 _pdbx_modification_feature.type None _pdbx_modification_feature.category Chromophore/chromophore-like # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id MET _struct_mon_prot_cis.label_seq_id 91 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id MET _struct_mon_prot_cis.auth_seq_id 88 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 92 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 89 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.04 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 12 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel A 11 12 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 17 ? VAL A 27 ? VAL A 12 VAL A 22 A 2 HIS A 30 ? ASP A 41 ? HIS A 25 ASP A 36 A 3 LYS A 46 ? CYS A 53 ? LYS A 41 CYS A 48 A 4 HIS A 220 ? ALA A 230 ? HIS A 217 ALA A 227 A 5 HIS A 202 ? SER A 211 ? HIS A 199 SER A 208 A 6 HIS A 151 ? ASP A 158 ? HIS A 148 ASP A 155 A 7 GLY A 163 ? ASN A 173 ? GLY A 160 ASN A 170 A 8 VAL A 179 ? PRO A 190 ? VAL A 176 PRO A 187 A 9 TYR A 95 ? PHE A 103 ? TYR A 92 PHE A 100 A 10 ASN A 108 ? GLU A 118 ? ASN A 105 GLU A 115 A 11 THR A 121 ? ILE A 131 ? THR A 118 ILE A 128 A 12 VAL A 17 ? VAL A 27 ? VAL A 12 VAL A 22 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 25 ? N GLY A 20 O PHE A 32 ? O PHE A 27 A 2 3 N SER A 35 ? N SER A 30 O ILE A 52 ? O ILE A 47 A 3 4 N PHE A 51 ? N PHE A 46 O MET A 221 ? O MET A 218 A 4 5 O VAL A 222 ? O VAL A 219 N SER A 211 ? N SER A 208 A 5 6 O HIS A 202 ? O HIS A 199 N ILE A 155 ? N ILE A 152 A 6 7 N MET A 156 ? N MET A 153 O LYS A 165 ? O LYS A 162 A 7 8 N PHE A 168 ? N PHE A 165 O HIS A 184 ? O HIS A 181 A 8 9 O GLN A 187 ? O GLN A 184 N GLU A 98 ? N GLU A 95 A 9 10 N TYR A 95 ? N TYR A 92 O VAL A 115 ? O VAL A 112 A 10 11 N LYS A 116 ? N LYS A 113 O VAL A 123 ? O VAL A 120 A 11 12 O ILE A 126 ? O ILE A 123 N GLU A 22 ? N GLU A 17 # _pdbx_entry_details.entry_id 3DQD _pdbx_entry_details.sequence_details ;RESIDUE SER 65 HAS BEEN MUTATED TO GLY 65. RESIDUES GLY 65, TYR 66 AND GLY 67 CONSTITUTE THE CHROMOPHORE CR2 66. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 19 ? ? CG A ASP 19 ? ? OD1 A ASP 19 ? ? 125.24 118.30 6.94 0.90 N 2 1 CB A ASP 82 ? ? CG A ASP 82 ? ? OD2 A ASP 82 ? ? 112.41 118.30 -5.89 0.90 N 3 1 CA A LEU 178 ? ? CB A LEU 178 ? ? CG A LEU 178 ? ? 99.85 115.30 -15.45 2.30 N 4 1 CB A LEU 178 ? ? CG A LEU 178 ? ? CD1 A LEU 178 ? ? 126.05 111.00 15.05 1.70 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ILE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 136 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -91.48 _pdbx_validate_torsion.psi -66.42 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CR2 70 A CR2 66 ? GLY ? 2 A CR2 70 A CR2 66 ? TYR ? 3 A CR2 70 A CR2 66 ? GLY ? # _pdbx_phasing_MR.entry_id 3DQD _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.980 _pdbx_phasing_MR.d_res_low_rotation 35.560 _pdbx_phasing_MR.d_res_high_translation 1.980 _pdbx_phasing_MR.d_res_low_translation 35.560 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -4 ? A GLY 1 2 1 Y 1 A ASP -3 ? A ASP 2 3 1 Y 1 A LEU 231 ? A LEU 234 4 1 Y 1 A GLY 232 ? A GLY 235 5 1 Y 1 A MET 233 ? A MET 236 6 1 Y 1 A ASP 234 ? A ASP 237 7 1 Y 1 A GLU 235 ? A GLU 238 8 1 Y 1 A LEU 236 ? A LEU 239 9 1 Y 1 A TYR 237 ? A TYR 240 10 1 Y 1 A LYS 238 ? A LYS 241 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CR2 N1 N N N 74 CR2 CA1 C N N 75 CR2 C1 C N N 76 CR2 N2 N N N 77 CR2 N3 N N N 78 CR2 C2 C N N 79 CR2 O2 O N N 80 CR2 CA2 C N N 81 CR2 CA3 C N N 82 CR2 C3 C N N 83 CR2 O3 O N N 84 CR2 CB2 C N N 85 CR2 CG2 C Y N 86 CR2 CD1 C Y N 87 CR2 CD2 C Y N 88 CR2 CE1 C Y N 89 CR2 CE2 C Y N 90 CR2 CZ C Y N 91 CR2 OH O N N 92 CR2 OXT O N N 93 CR2 H H N N 94 CR2 H2 H N N 95 CR2 HA1 H N N 96 CR2 HA12 H N N 97 CR2 HA31 H N N 98 CR2 HA32 H N N 99 CR2 HB2 H N N 100 CR2 HD1 H N N 101 CR2 HD2 H N N 102 CR2 HE1 H N N 103 CR2 HE2 H N N 104 CR2 HOH H N N 105 CR2 HXT H N N 106 CYS N N N N 107 CYS CA C N R 108 CYS C C N N 109 CYS O O N N 110 CYS CB C N N 111 CYS SG S N N 112 CYS OXT O N N 113 CYS H H N N 114 CYS H2 H N N 115 CYS HA H N N 116 CYS HB2 H N N 117 CYS HB3 H N N 118 CYS HG H N N 119 CYS HXT H N N 120 GLN N N N N 121 GLN CA C N S 122 GLN C C N N 123 GLN O O N N 124 GLN CB C N N 125 GLN CG C N N 126 GLN CD C N N 127 GLN OE1 O N N 128 GLN NE2 N N N 129 GLN OXT O N N 130 GLN H H N N 131 GLN H2 H N N 132 GLN HA H N N 133 GLN HB2 H N N 134 GLN HB3 H N N 135 GLN HG2 H N N 136 GLN HG3 H N N 137 GLN HE21 H N N 138 GLN HE22 H N N 139 GLN HXT H N N 140 GLU N N N N 141 GLU CA C N S 142 GLU C C N N 143 GLU O O N N 144 GLU CB C N N 145 GLU CG C N N 146 GLU CD C N N 147 GLU OE1 O N N 148 GLU OE2 O N N 149 GLU OXT O N N 150 GLU H H N N 151 GLU H2 H N N 152 GLU HA H N N 153 GLU HB2 H N N 154 GLU HB3 H N N 155 GLU HG2 H N N 156 GLU HG3 H N N 157 GLU HE2 H N N 158 GLU HXT H N N 159 GLY N N N N 160 GLY CA C N N 161 GLY C C N N 162 GLY O O N N 163 GLY OXT O N N 164 GLY H H N N 165 GLY H2 H N N 166 GLY HA2 H N N 167 GLY HA3 H N N 168 GLY HXT H N N 169 HIS N N N N 170 HIS CA C N S 171 HIS C C N N 172 HIS O O N N 173 HIS CB C N N 174 HIS CG C Y N 175 HIS ND1 N Y N 176 HIS CD2 C Y N 177 HIS CE1 C Y N 178 HIS NE2 N Y N 179 HIS OXT O N N 180 HIS H H N N 181 HIS H2 H N N 182 HIS HA H N N 183 HIS HB2 H N N 184 HIS HB3 H N N 185 HIS HD1 H N N 186 HIS HD2 H N N 187 HIS HE1 H N N 188 HIS HE2 H N N 189 HIS HXT H N N 190 HOH O O N N 191 HOH H1 H N N 192 HOH H2 H N N 193 ILE N N N N 194 ILE CA C N S 195 ILE C C N N 196 ILE O O N N 197 ILE CB C N S 198 ILE CG1 C N N 199 ILE CG2 C N N 200 ILE CD1 C N N 201 ILE OXT O N N 202 ILE H H N N 203 ILE H2 H N N 204 ILE HA H N N 205 ILE HB H N N 206 ILE HG12 H N N 207 ILE HG13 H N N 208 ILE HG21 H N N 209 ILE HG22 H N N 210 ILE HG23 H N N 211 ILE HD11 H N N 212 ILE HD12 H N N 213 ILE HD13 H N N 214 ILE HXT H N N 215 LEU N N N N 216 LEU CA C N S 217 LEU C C N N 218 LEU O O N N 219 LEU CB C N N 220 LEU CG C N N 221 LEU CD1 C N N 222 LEU CD2 C N N 223 LEU OXT O N N 224 LEU H H N N 225 LEU H2 H N N 226 LEU HA H N N 227 LEU HB2 H N N 228 LEU HB3 H N N 229 LEU HG H N N 230 LEU HD11 H N N 231 LEU HD12 H N N 232 LEU HD13 H N N 233 LEU HD21 H N N 234 LEU HD22 H N N 235 LEU HD23 H N N 236 LEU HXT H N N 237 LYS N N N N 238 LYS CA C N S 239 LYS C C N N 240 LYS O O N N 241 LYS CB C N N 242 LYS CG C N N 243 LYS CD C N N 244 LYS CE C N N 245 LYS NZ N N N 246 LYS OXT O N N 247 LYS H H N N 248 LYS H2 H N N 249 LYS HA H N N 250 LYS HB2 H N N 251 LYS HB3 H N N 252 LYS HG2 H N N 253 LYS HG3 H N N 254 LYS HD2 H N N 255 LYS HD3 H N N 256 LYS HE2 H N N 257 LYS HE3 H N N 258 LYS HZ1 H N N 259 LYS HZ2 H N N 260 LYS HZ3 H N N 261 LYS HXT H N N 262 MET N N N N 263 MET CA C N S 264 MET C C N N 265 MET O O N N 266 MET CB C N N 267 MET CG C N N 268 MET SD S N N 269 MET CE C N N 270 MET OXT O N N 271 MET H H N N 272 MET H2 H N N 273 MET HA H N N 274 MET HB2 H N N 275 MET HB3 H N N 276 MET HG2 H N N 277 MET HG3 H N N 278 MET HE1 H N N 279 MET HE2 H N N 280 MET HE3 H N N 281 MET HXT H N N 282 PHE N N N N 283 PHE CA C N S 284 PHE C C N N 285 PHE O O N N 286 PHE CB C N N 287 PHE CG C Y N 288 PHE CD1 C Y N 289 PHE CD2 C Y N 290 PHE CE1 C Y N 291 PHE CE2 C Y N 292 PHE CZ C Y N 293 PHE OXT O N N 294 PHE H H N N 295 PHE H2 H N N 296 PHE HA H N N 297 PHE HB2 H N N 298 PHE HB3 H N N 299 PHE HD1 H N N 300 PHE HD2 H N N 301 PHE HE1 H N N 302 PHE HE2 H N N 303 PHE HZ H N N 304 PHE HXT H N N 305 PRO N N N N 306 PRO CA C N S 307 PRO C C N N 308 PRO O O N N 309 PRO CB C N N 310 PRO CG C N N 311 PRO CD C N N 312 PRO OXT O N N 313 PRO H H N N 314 PRO HA H N N 315 PRO HB2 H N N 316 PRO HB3 H N N 317 PRO HG2 H N N 318 PRO HG3 H N N 319 PRO HD2 H N N 320 PRO HD3 H N N 321 PRO HXT H N N 322 SER N N N N 323 SER CA C N S 324 SER C C N N 325 SER O O N N 326 SER CB C N N 327 SER OG O N N 328 SER OXT O N N 329 SER H H N N 330 SER H2 H N N 331 SER HA H N N 332 SER HB2 H N N 333 SER HB3 H N N 334 SER HG H N N 335 SER HXT H N N 336 THR N N N N 337 THR CA C N S 338 THR C C N N 339 THR O O N N 340 THR CB C N R 341 THR OG1 O N N 342 THR CG2 C N N 343 THR OXT O N N 344 THR H H N N 345 THR H2 H N N 346 THR HA H N N 347 THR HB H N N 348 THR HG1 H N N 349 THR HG21 H N N 350 THR HG22 H N N 351 THR HG23 H N N 352 THR HXT H N N 353 TRP N N N N 354 TRP CA C N S 355 TRP C C N N 356 TRP O O N N 357 TRP CB C N N 358 TRP CG C Y N 359 TRP CD1 C Y N 360 TRP CD2 C Y N 361 TRP NE1 N Y N 362 TRP CE2 C Y N 363 TRP CE3 C Y N 364 TRP CZ2 C Y N 365 TRP CZ3 C Y N 366 TRP CH2 C Y N 367 TRP OXT O N N 368 TRP H H N N 369 TRP H2 H N N 370 TRP HA H N N 371 TRP HB2 H N N 372 TRP HB3 H N N 373 TRP HD1 H N N 374 TRP HE1 H N N 375 TRP HE3 H N N 376 TRP HZ2 H N N 377 TRP HZ3 H N N 378 TRP HH2 H N N 379 TRP HXT H N N 380 TYR N N N N 381 TYR CA C N S 382 TYR C C N N 383 TYR O O N N 384 TYR CB C N N 385 TYR CG C Y N 386 TYR CD1 C Y N 387 TYR CD2 C Y N 388 TYR CE1 C Y N 389 TYR CE2 C Y N 390 TYR CZ C Y N 391 TYR OH O N N 392 TYR OXT O N N 393 TYR H H N N 394 TYR H2 H N N 395 TYR HA H N N 396 TYR HB2 H N N 397 TYR HB3 H N N 398 TYR HD1 H N N 399 TYR HD2 H N N 400 TYR HE1 H N N 401 TYR HE2 H N N 402 TYR HH H N N 403 TYR HXT H N N 404 VAL N N N N 405 VAL CA C N S 406 VAL C C N N 407 VAL O O N N 408 VAL CB C N N 409 VAL CG1 C N N 410 VAL CG2 C N N 411 VAL OXT O N N 412 VAL H H N N 413 VAL H2 H N N 414 VAL HA H N N 415 VAL HB H N N 416 VAL HG11 H N N 417 VAL HG12 H N N 418 VAL HG13 H N N 419 VAL HG21 H N N 420 VAL HG22 H N N 421 VAL HG23 H N N 422 VAL HXT H N N 423 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CR2 O3 C3 doub N N 70 CR2 CA3 C3 sing N N 71 CR2 CA3 N3 sing N N 72 CR2 C3 OXT sing N N 73 CR2 N1 CA1 sing N N 74 CR2 O2 C2 doub N N 75 CR2 N3 C2 sing N N 76 CR2 N3 C1 sing N N 77 CR2 C2 CA2 sing N N 78 CR2 CA1 C1 sing N N 79 CR2 C1 N2 doub N N 80 CR2 CA2 N2 sing N N 81 CR2 CA2 CB2 doub N Z 82 CR2 CB2 CG2 sing N N 83 CR2 CG2 CD2 doub Y N 84 CR2 CG2 CD1 sing Y N 85 CR2 CD2 CE2 sing Y N 86 CR2 CD1 CE1 doub Y N 87 CR2 CE2 CZ doub Y N 88 CR2 CE1 CZ sing Y N 89 CR2 CZ OH sing N N 90 CR2 N1 H sing N N 91 CR2 N1 H2 sing N N 92 CR2 CA1 HA1 sing N N 93 CR2 CA1 HA12 sing N N 94 CR2 CA3 HA31 sing N N 95 CR2 CA3 HA32 sing N N 96 CR2 CB2 HB2 sing N N 97 CR2 CD1 HD1 sing N N 98 CR2 CD2 HD2 sing N N 99 CR2 CE1 HE1 sing N N 100 CR2 CE2 HE2 sing N N 101 CR2 OH HOH sing N N 102 CR2 OXT HXT sing N N 103 CYS N CA sing N N 104 CYS N H sing N N 105 CYS N H2 sing N N 106 CYS CA C sing N N 107 CYS CA CB sing N N 108 CYS CA HA sing N N 109 CYS C O doub N N 110 CYS C OXT sing N N 111 CYS CB SG sing N N 112 CYS CB HB2 sing N N 113 CYS CB HB3 sing N N 114 CYS SG HG sing N N 115 CYS OXT HXT sing N N 116 GLN N CA sing N N 117 GLN N H sing N N 118 GLN N H2 sing N N 119 GLN CA C sing N N 120 GLN CA CB sing N N 121 GLN CA HA sing N N 122 GLN C O doub N N 123 GLN C OXT sing N N 124 GLN CB CG sing N N 125 GLN CB HB2 sing N N 126 GLN CB HB3 sing N N 127 GLN CG CD sing N N 128 GLN CG HG2 sing N N 129 GLN CG HG3 sing N N 130 GLN CD OE1 doub N N 131 GLN CD NE2 sing N N 132 GLN NE2 HE21 sing N N 133 GLN NE2 HE22 sing N N 134 GLN OXT HXT sing N N 135 GLU N CA sing N N 136 GLU N H sing N N 137 GLU N H2 sing N N 138 GLU CA C sing N N 139 GLU CA CB sing N N 140 GLU CA HA sing N N 141 GLU C O doub N N 142 GLU C OXT sing N N 143 GLU CB CG sing N N 144 GLU CB HB2 sing N N 145 GLU CB HB3 sing N N 146 GLU CG CD sing N N 147 GLU CG HG2 sing N N 148 GLU CG HG3 sing N N 149 GLU CD OE1 doub N N 150 GLU CD OE2 sing N N 151 GLU OE2 HE2 sing N N 152 GLU OXT HXT sing N N 153 GLY N CA sing N N 154 GLY N H sing N N 155 GLY N H2 sing N N 156 GLY CA C sing N N 157 GLY CA HA2 sing N N 158 GLY CA HA3 sing N N 159 GLY C O doub N N 160 GLY C OXT sing N N 161 GLY OXT HXT sing N N 162 HIS N CA sing N N 163 HIS N H sing N N 164 HIS N H2 sing N N 165 HIS CA C sing N N 166 HIS CA CB sing N N 167 HIS CA HA sing N N 168 HIS C O doub N N 169 HIS C OXT sing N N 170 HIS CB CG sing N N 171 HIS CB HB2 sing N N 172 HIS CB HB3 sing N N 173 HIS CG ND1 sing Y N 174 HIS CG CD2 doub Y N 175 HIS ND1 CE1 doub Y N 176 HIS ND1 HD1 sing N N 177 HIS CD2 NE2 sing Y N 178 HIS CD2 HD2 sing N N 179 HIS CE1 NE2 sing Y N 180 HIS CE1 HE1 sing N N 181 HIS NE2 HE2 sing N N 182 HIS OXT HXT sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 ILE N CA sing N N 186 ILE N H sing N N 187 ILE N H2 sing N N 188 ILE CA C sing N N 189 ILE CA CB sing N N 190 ILE CA HA sing N N 191 ILE C O doub N N 192 ILE C OXT sing N N 193 ILE CB CG1 sing N N 194 ILE CB CG2 sing N N 195 ILE CB HB sing N N 196 ILE CG1 CD1 sing N N 197 ILE CG1 HG12 sing N N 198 ILE CG1 HG13 sing N N 199 ILE CG2 HG21 sing N N 200 ILE CG2 HG22 sing N N 201 ILE CG2 HG23 sing N N 202 ILE CD1 HD11 sing N N 203 ILE CD1 HD12 sing N N 204 ILE CD1 HD13 sing N N 205 ILE OXT HXT sing N N 206 LEU N CA sing N N 207 LEU N H sing N N 208 LEU N H2 sing N N 209 LEU CA C sing N N 210 LEU CA CB sing N N 211 LEU CA HA sing N N 212 LEU C O doub N N 213 LEU C OXT sing N N 214 LEU CB CG sing N N 215 LEU CB HB2 sing N N 216 LEU CB HB3 sing N N 217 LEU CG CD1 sing N N 218 LEU CG CD2 sing N N 219 LEU CG HG sing N N 220 LEU CD1 HD11 sing N N 221 LEU CD1 HD12 sing N N 222 LEU CD1 HD13 sing N N 223 LEU CD2 HD21 sing N N 224 LEU CD2 HD22 sing N N 225 LEU CD2 HD23 sing N N 226 LEU OXT HXT sing N N 227 LYS N CA sing N N 228 LYS N H sing N N 229 LYS N H2 sing N N 230 LYS CA C sing N N 231 LYS CA CB sing N N 232 LYS CA HA sing N N 233 LYS C O doub N N 234 LYS C OXT sing N N 235 LYS CB CG sing N N 236 LYS CB HB2 sing N N 237 LYS CB HB3 sing N N 238 LYS CG CD sing N N 239 LYS CG HG2 sing N N 240 LYS CG HG3 sing N N 241 LYS CD CE sing N N 242 LYS CD HD2 sing N N 243 LYS CD HD3 sing N N 244 LYS CE NZ sing N N 245 LYS CE HE2 sing N N 246 LYS CE HE3 sing N N 247 LYS NZ HZ1 sing N N 248 LYS NZ HZ2 sing N N 249 LYS NZ HZ3 sing N N 250 LYS OXT HXT sing N N 251 MET N CA sing N N 252 MET N H sing N N 253 MET N H2 sing N N 254 MET CA C sing N N 255 MET CA CB sing N N 256 MET CA HA sing N N 257 MET C O doub N N 258 MET C OXT sing N N 259 MET CB CG sing N N 260 MET CB HB2 sing N N 261 MET CB HB3 sing N N 262 MET CG SD sing N N 263 MET CG HG2 sing N N 264 MET CG HG3 sing N N 265 MET SD CE sing N N 266 MET CE HE1 sing N N 267 MET CE HE2 sing N N 268 MET CE HE3 sing N N 269 MET OXT HXT sing N N 270 PHE N CA sing N N 271 PHE N H sing N N 272 PHE N H2 sing N N 273 PHE CA C sing N N 274 PHE CA CB sing N N 275 PHE CA HA sing N N 276 PHE C O doub N N 277 PHE C OXT sing N N 278 PHE CB CG sing N N 279 PHE CB HB2 sing N N 280 PHE CB HB3 sing N N 281 PHE CG CD1 doub Y N 282 PHE CG CD2 sing Y N 283 PHE CD1 CE1 sing Y N 284 PHE CD1 HD1 sing N N 285 PHE CD2 CE2 doub Y N 286 PHE CD2 HD2 sing N N 287 PHE CE1 CZ doub Y N 288 PHE CE1 HE1 sing N N 289 PHE CE2 CZ sing Y N 290 PHE CE2 HE2 sing N N 291 PHE CZ HZ sing N N 292 PHE OXT HXT sing N N 293 PRO N CA sing N N 294 PRO N CD sing N N 295 PRO N H sing N N 296 PRO CA C sing N N 297 PRO CA CB sing N N 298 PRO CA HA sing N N 299 PRO C O doub N N 300 PRO C OXT sing N N 301 PRO CB CG sing N N 302 PRO CB HB2 sing N N 303 PRO CB HB3 sing N N 304 PRO CG CD sing N N 305 PRO CG HG2 sing N N 306 PRO CG HG3 sing N N 307 PRO CD HD2 sing N N 308 PRO CD HD3 sing N N 309 PRO OXT HXT sing N N 310 SER N CA sing N N 311 SER N H sing N N 312 SER N H2 sing N N 313 SER CA C sing N N 314 SER CA CB sing N N 315 SER CA HA sing N N 316 SER C O doub N N 317 SER C OXT sing N N 318 SER CB OG sing N N 319 SER CB HB2 sing N N 320 SER CB HB3 sing N N 321 SER OG HG sing N N 322 SER OXT HXT sing N N 323 THR N CA sing N N 324 THR N H sing N N 325 THR N H2 sing N N 326 THR CA C sing N N 327 THR CA CB sing N N 328 THR CA HA sing N N 329 THR C O doub N N 330 THR C OXT sing N N 331 THR CB OG1 sing N N 332 THR CB CG2 sing N N 333 THR CB HB sing N N 334 THR OG1 HG1 sing N N 335 THR CG2 HG21 sing N N 336 THR CG2 HG22 sing N N 337 THR CG2 HG23 sing N N 338 THR OXT HXT sing N N 339 TRP N CA sing N N 340 TRP N H sing N N 341 TRP N H2 sing N N 342 TRP CA C sing N N 343 TRP CA CB sing N N 344 TRP CA HA sing N N 345 TRP C O doub N N 346 TRP C OXT sing N N 347 TRP CB CG sing N N 348 TRP CB HB2 sing N N 349 TRP CB HB3 sing N N 350 TRP CG CD1 doub Y N 351 TRP CG CD2 sing Y N 352 TRP CD1 NE1 sing Y N 353 TRP CD1 HD1 sing N N 354 TRP CD2 CE2 doub Y N 355 TRP CD2 CE3 sing Y N 356 TRP NE1 CE2 sing Y N 357 TRP NE1 HE1 sing N N 358 TRP CE2 CZ2 sing Y N 359 TRP CE3 CZ3 doub Y N 360 TRP CE3 HE3 sing N N 361 TRP CZ2 CH2 doub Y N 362 TRP CZ2 HZ2 sing N N 363 TRP CZ3 CH2 sing Y N 364 TRP CZ3 HZ3 sing N N 365 TRP CH2 HH2 sing N N 366 TRP OXT HXT sing N N 367 TYR N CA sing N N 368 TYR N H sing N N 369 TYR N H2 sing N N 370 TYR CA C sing N N 371 TYR CA CB sing N N 372 TYR CA HA sing N N 373 TYR C O doub N N 374 TYR C OXT sing N N 375 TYR CB CG sing N N 376 TYR CB HB2 sing N N 377 TYR CB HB3 sing N N 378 TYR CG CD1 doub Y N 379 TYR CG CD2 sing Y N 380 TYR CD1 CE1 sing Y N 381 TYR CD1 HD1 sing N N 382 TYR CD2 CE2 doub Y N 383 TYR CD2 HD2 sing N N 384 TYR CE1 CZ doub Y N 385 TYR CE1 HE1 sing N N 386 TYR CE2 CZ sing Y N 387 TYR CE2 HE2 sing N N 388 TYR CZ OH sing N N 389 TYR OH HH sing N N 390 TYR OXT HXT sing N N 391 VAL N CA sing N N 392 VAL N H sing N N 393 VAL N H2 sing N N 394 VAL CA C sing N N 395 VAL CA CB sing N N 396 VAL CA HA sing N N 397 VAL C O doub N N 398 VAL C OXT sing N N 399 VAL CB CG1 sing N N 400 VAL CB CG2 sing N N 401 VAL CB HB sing N N 402 VAL CG1 HG11 sing N N 403 VAL CG1 HG12 sing N N 404 VAL CG1 HG13 sing N N 405 VAL CG2 HG21 sing N N 406 VAL CG2 HG22 sing N N 407 VAL CG2 HG23 sing N N 408 VAL OXT HXT sing N N 409 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1HUY _pdbx_initial_refinement_model.details 'PDB ENTRY 1HUY WITH RESIDUE 80 MUTATED TO GLUTAMINE' # _atom_sites.entry_id 3DQD _atom_sites.fract_transf_matrix[1][1] 0.019534 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015879 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014059 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_